RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2343
(396 letters)
>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 107
Score = 66.6 bits (162), Expect = 2e-14
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 113 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHY 172
Y+ G +LHS ++ P+ + VLVVG +S D+ + ++ + + G
Sbjct: 9 EYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD 68
Query: 173 YP 174
Sbjct: 69 IQ 70
>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 235
Score = 59.0 bits (141), Expect = 1e-10
Identities = 30/236 (12%), Positives = 70/236 (29%), Gaps = 65/236 (27%)
Query: 108 VARYPNYSGY--FSGEILHSMDY-KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH 164
V + PN+ G F+G + H+ ++ P +RV V+G G+SG ++ + + +++
Sbjct: 1 VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV 60
Query: 165 STRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKP-- 222
R + P +EE+ + G +
Sbjct: 61 FQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELV 120
Query: 223 -------------------------------------------------DHPLDAAHPIM 233
+ + +P
Sbjct: 121 ETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFG 180
Query: 234 NSQILYHIGHGDILPKD----------DIKNLNGNIVHFVDDTHIEVDTIIYATGY 279
+++ I + ++ +D I+ + V + E+D+++ ATG+
Sbjct: 181 TKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRT-SEREYELDSLVLATGF 235
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 335
Score = 55.0 bits (131), Expect = 4e-09
Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 30/179 (16%)
Query: 17 RVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 76
+Y L +P D +P+ + +Y R YA+ + T+V++
Sbjct: 81 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLD 138
Query: 77 LEQYEDIWEVELSNGKKKK------YDFIAVCNGAQRVARYPNYSGY------------- 117
+E+ + W V K +D +++CNG V
Sbjct: 139 IEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPET 198
Query: 118 --------FSGEILHSMDYKSPDQI-RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
H P + VV S A A S ++ ++
Sbjct: 199 KLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSK 257
Score = 25.8 bits (55), Expect = 9.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 135 RNKRVLVVGAGNSGCDIA 152
+++ ++GAG SG A
Sbjct: 3 TIRKIAIIGAGPSGLVTA 20
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 51.8 bits (123), Expect = 4e-08
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 11/119 (9%)
Query: 2 ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP----NHSMMLDYLRS 57
D+GGVW YP + + +L Y+
Sbjct: 39 AGDVGGVWYW-----NRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINF 93
Query: 58 YAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY 114
A KFD+ + F+T V + + W V+ ++G + + ++ + +G A
Sbjct: 94 VADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGAL 152
>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 162
Score = 43.7 bits (102), Expect = 7e-06
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 17/174 (9%)
Query: 108 VARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
V R P G ++L +D +V ++G G G D A+ S E +
Sbjct: 1 VPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIA 60
Query: 168 RGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLD 227
F + + Q G + +Q+ + KP L
Sbjct: 61 G-------FCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIV------MLQRKASKPGQGLG 107
Query: 228 AAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTH---IEVDTIIYATG 278
++ L G ++P + ++ + +H V + + VD ++ G
Sbjct: 108 KTTGWIHRTTLLSRG-VKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG 160
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 39.3 bits (90), Expect = 5e-04
Identities = 30/211 (14%), Positives = 53/211 (25%), Gaps = 16/211 (7%)
Query: 136 NKRVLVVGAGNSGCDIAVDASHH---------SEKVYHSTRRGYHYYPKFIDGKPTPQWM 186
R+ VVG SG A+ S + G P ++
Sbjct: 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQP------ELVHYL 57
Query: 187 LQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDI 246
L+ G + S + ++ V L G D+ + + H
Sbjct: 58 LEQGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSK 117
Query: 247 LPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAP 306
++ + F D T E + +I A G + + I
Sbjct: 118 CLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIETVDRMVHGRVLLIGD 177
Query: 307 RNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 337
+ A D L F ++
Sbjct: 178 AAVTPRPHAA-AGGAKASDDARTLAEVFTKN 207
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 35.1 bits (79), Expect = 0.006
Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 4/147 (2%)
Query: 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 195
N V++VG G +G ++A + P + + +
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 196 KEETMAYIKQVFKLA-GFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKN 254
AY Q +L G + L + +++ G ++P ++ +
Sbjct: 63 LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122
Query: 255 ---LNGNIVHFVDDTHIEVDTIIYATG 278
L + +++ D +I A G
Sbjct: 123 AAGLQVDNGIVINEHMQTSDPLIMAVG 149
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 35.3 bits (80), Expect = 0.007
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEK--VYHSTRRGYHYYPKFIDGKPTPQWMLQLG 190
+ N R+ +VG+G + A+ A+ K ++ + +
Sbjct: 2 ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFP 61
Query: 191 NKFSSKEETMAYIKQVFKL 209
E T + KQ +
Sbjct: 62 EGILGVELTDKFRKQSERF 80
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 35.5 bits (81), Expect = 0.008
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 4/145 (2%)
Query: 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST--RRGYHYYPKFIDG 179
I + D ++ K + + G GN+G +A S + +G Y P ++
Sbjct: 18 IREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNA 77
Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
+W + G+ T +++ +L +++ +A + I+
Sbjct: 78 DEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAK--IVA 135
Query: 240 HIGHGDILPKDDIKNLNGNIVHFVD 264
+ +G + P+ D I+ D
Sbjct: 136 EVANGPVTPEADEILFEKGILQIPD 160
>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain
3 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 153
Score = 34.0 bits (77), Expect = 0.011
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 127 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQW 185
SP V+V+GAG++ D A A + +V+ R+G+ + +
Sbjct: 36 ACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKE 95
Query: 186 MLQLGNKFSSKEE 198
F S +
Sbjct: 96 EKCEFLPFLSPRK 108
>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
middle domain {Methylophilus methylotrophus, w3a1
[TaxId: 17]}
Length = 233
Score = 34.4 bits (77), Expect = 0.017
Identities = 13/144 (9%), Positives = 37/144 (25%), Gaps = 5/144 (3%)
Query: 42 YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAV 101
+ ++ SY + + + + + + + + D + +
Sbjct: 86 GHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVII 145
Query: 102 CNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK 161
GA + S + + L+ A +G +A + + +
Sbjct: 146 ATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQ 205
Query: 162 VYHSTRRGYHYYPKFIDGKPTPQW 185
+ +R G P
Sbjct: 206 IAIPYKR-----ETIAWGTPHMPG 224
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase,
BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 121
Score = 32.0 bits (72), Expect = 0.034
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 223 DHPLDAAHPIMNSQILY--HIGHG-DILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATG 278
+ A P + + H G D+ + + +V D T I D ++ G
Sbjct: 63 PRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 121
>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 122
Score = 32.0 bits (72), Expect = 0.040
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 109 ARYPNYSGYFSGEILHSMDYKSPDQIRN-----KRVLVVGAGNSGCDIAVDASHHSEKVY 163
AR P G +L D+I+ +++G G G ++A + + V
Sbjct: 2 AREPQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVK 59
Query: 164 HSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 193
R + + G KF
Sbjct: 60 LIHRGAMFLGLDEELSNMIKDMLEETGVKF 89
Score = 28.5 bits (63), Expect = 0.57
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 9/120 (7%)
Query: 159 SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYG 218
E + R + + + +G F E + + +
Sbjct: 10 KEYLLTL--RTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF 67
Query: 219 LKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATG 278
L LD M +L G ++ N V + IE I A G
Sbjct: 68 L-----GLDEELSNMIKDMLEETGV-KFFLNSELLEANEEGV-LTNSGFIEGKVKICAIG 120
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 32.0 bits (72), Expect = 0.052
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF 193
+ +K VLVVGAG G +A + R Y + LG +
Sbjct: 22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR---------DLGGEA 72
Query: 194 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD--- 250
+E + ++ + + + + D +A + I P+D
Sbjct: 73 VRFDELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA--NPRDVEE 130
Query: 251 DIKNLNGNIVHFVDD 265
++N+ V +DD
Sbjct: 131 GVENIEDVEVRTIDD 145
>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli
[TaxId: 562]}
Length = 126
Score = 31.6 bits (71), Expect = 0.058
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS 194
RN++V V+G GN+ + A+ S+ + +V+ RR + + +L +K
Sbjct: 26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF--------RAEKILIKRLMDKVE 77
Query: 195 SKEETMAYIKQVFKLAGFDGVDYGLKKPD 223
+ + + + ++ G G++ D
Sbjct: 78 NGNIILHTNRTLEEVTGDQMGVTGVRLRD 106
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 31.3 bits (70), Expect = 0.084
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 22 LHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE 81
L + T+V + ++ ++ V N V ++
Sbjct: 56 LGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM--PNAIVQSVGVSS 113
Query: 82 DIWEVELSNGKKKKYDFIAVCNG 104
++L +G+K + D I G
Sbjct: 114 GKLLIKLKDGRKVETDHIVAAVG 136
Score = 29.0 bits (64), Expect = 0.57
Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPKDDIKNLN 256
E + + + G + + +K + + N + G ++P ++++
Sbjct: 51 ELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVG 110
Query: 257 GN----IVHFVDDTHIEVDTIIYATG 278
+ ++ D +E D I+ A G
Sbjct: 111 VSSGKLLIKLKDGRKVETDHIVAAVG 136
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
subunit F (AhpF), C-terminal domains {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 31.6 bits (70), Expect = 0.094
Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 7/157 (4%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKV------YHSTRRGYHYYPKFIDGKPTPQWMLQLGNK 192
VL+VG+G +G A+ ++ + + +I T L K
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63
Query: 193 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDI 252
E + I G A S I+ +
Sbjct: 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123
Query: 253 KNLNGNIVHFVDDTHIE-VDTIIYATGYNRHFPFIDK 288
+ + D E ++A G P+
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQI 160
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 30.0 bits (67), Expect = 0.11
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
+ K V+++G G +G R
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTR 37
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 31.3 bits (70), Expect = 0.13
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 135 RNKRVLVVGAGNSGCDIAVDAS 156
++ ++L++G+G +G AV A+
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAA 25
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 31.0 bits (69), Expect = 0.13
Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 5/110 (4%)
Query: 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 197
++ V+G G G +V R Y + + + ++
Sbjct: 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVE---TDGSIFNESLTANDP 58
Query: 198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL 247
+ +A + V +K L PI+ +G + L
Sbjct: 59 DFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIH--NGMGTIEEL 106
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 196
Score = 30.9 bits (68), Expect = 0.17
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 135 RNKRVLVVGAGNSGCDIAVDAS---HHSEKVYHSTRRGYHYYPKFIDGKPTPQWM 186
+ ++ ++GAG + A + + ++ I P +
Sbjct: 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV 57
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis
[TaxId: 1423]}
Length = 171
Score = 30.5 bits (68), Expect = 0.18
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 56 RSYAKKFDVYNHSIFNTEVINLEQYE---DIWEVELSNGKKKKYDFIAVCNGAQRVARYP 112
+ Y ++++T++I+L ++ E E S K + V V P
Sbjct: 13 HGRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSP 72
Query: 113 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGA--GNSGCDIAVDA 155
Y SG + +++D+ S +Q + K V ++ G G A++
Sbjct: 73 EYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGKGGINALNN 117
>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial
p450 systems {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 30.6 bits (68), Expect = 0.25
Identities = 24/186 (12%), Positives = 51/186 (27%), Gaps = 43/186 (23%)
Query: 137 KRVLVVGAGNSGCDI-------------------AVDASHHS--EKVYHSTRRGYH---Y 172
+++G GN D+ A+ A S + V+ RRG +
Sbjct: 40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAF 99
Query: 173 YPKFID--GKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAH 230
K + + + F ++ + + K + +KP A
Sbjct: 100 TIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARR 159
Query: 231 PIMN--SQILYHIGHGDILPKDDIKNLNGNIVHFV---------------DDTHIEVDTI 273
+ + + +LP D + G + D + +
Sbjct: 160 ASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLV 219
Query: 274 IYATGY 279
+ + GY
Sbjct: 220 LSSIGY 225
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein
MoeB {Escherichia coli [TaxId: 562]}
Length = 247
Score = 30.7 bits (68), Expect = 0.26
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA 152
IL D+ + +++ RVL+VG G GC +
Sbjct: 16 ILRGFDFDGQEALKDSRVLIVGLGGLGCAAS 46
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase,
middle domain {Escherichia coli [TaxId: 562]}
Length = 179
Score = 29.8 bits (66), Expect = 0.38
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 196
K + VVGAG +G A++A+ + D + + K
Sbjct: 44 KNLAVVGAGPAGLAFAINAAAR------------GHQVTLFDAHSEIGGQFNIAKQIPGK 91
Query: 197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN 256
EE ++ ++ GV K +H + A + + G + + +
Sbjct: 92 EEFYETLRYYRRMIEVTGVTL---KLNHTVTADQLQAFDETILASGIPNRALAQPLIDS- 147
Query: 257 GNIVHFVD--DTHIEVD 271
G VH + D +E+D
Sbjct: 148 GKTVHLIGGCDVAMELD 164
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale
cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 30.2 bits (67), Expect = 0.41
Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 13/174 (7%)
Query: 128 YKSPDQIRNKRVLVVGAGNSGCDIAVDAS----------HHSEKVYHSTRRGYHYYPKFI 177
V+VVGAG++G A + S S G + I
Sbjct: 25 MTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMI 84
Query: 178 DGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI 237
KP ++ ++G + ++ + + + L +P+ L A + +
Sbjct: 85 VRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTS--TIMSKLLARPNVKLFNAVAAEDLIV 142
Query: 238 LYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKL 291
+ G ++ + N + +D +E ++ + G++ F ++L
Sbjct: 143 KGNRVGG-VVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRL 195
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 29.7 bits (65), Expect = 0.51
Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 1/96 (1%)
Query: 9 WNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHS 68
+ + + VP+ P
Sbjct: 108 AKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKV 167
Query: 69 IFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG 104
+ +T V + + D ++E +NG D + V G
Sbjct: 168 LTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMG 202
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 29.8 bits (66), Expect = 0.58
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 135 RNKRVLVVGAGNSGCDIAVDASHHSEKV 162
++K++L+VGAG SG I + +V
Sbjct: 1 KSKKILIVGAGFSGAVIGRQLAEKGHQV 28
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 29.3 bits (65), Expect = 0.68
Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 19/134 (14%)
Query: 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH-STRRGYHYYPKFIDGKPTPQWMLQLG 190
D + K V + G GN A + K S GY Y P+ I
Sbjct: 32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGIT------------ 79
Query: 191 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPI-MNSQILYHIGHGDILPK 249
EE + Y+ ++ DY K P I+ + +
Sbjct: 80 -----TEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDL 134
Query: 250 DDIKNLNGNIVHFV 263
+ K + N V +
Sbjct: 135 EQAKKIVANNVKYY 148
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 28.6 bits (63), Expect = 0.70
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 133 QIRNKRVLVVGAGNSG 148
Q+++KR+L++G G G
Sbjct: 10 QLKDKRILLIGGGEVG 25
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M
oxidoreductase/carboxylase {Xanthobacter sp., py2
[TaxId: 35809]}
Length = 121
Score = 28.4 bits (62), Expect = 0.73
Identities = 14/107 (13%), Positives = 27/107 (25%), Gaps = 13/107 (12%)
Query: 116 GYFSGE-ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA-------VDASHHSEKVYHSTR 167
G F ++ +DY+ V+VVG + +
Sbjct: 6 GVFDHATLVEELDYEPG-----STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI 60
Query: 168 RGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG 214
+ +D + G+ + EE Q +G
Sbjct: 61 KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNG 107
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 117
Score = 28.2 bits (62), Expect = 0.73
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 118 FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI 177
FS IL S + ++ K ++V+G G G ++ ++ KV
Sbjct: 5 FSNRILDSTGALNLGEV-PKSLVVIGGGYIGIELGTAYANFGTKVTILEG--AGEILSGF 61
Query: 178 DGKPTPQWMLQL 189
+ + +L
Sbjct: 62 EKQMAAIIKKRL 73
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 29.3 bits (65), Expect = 0.90
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 134 IRNKRVLVVGAGNSGCDIA 152
+ +VLV+GAG GC++
Sbjct: 35 LDTCKVLVIGAGGLGCELL 53
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 28.8 bits (63), Expect = 1.0
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKV 162
GE+++++D P R + +G G +G + +
Sbjct: 29 GEVIYNVDENDP---REYDAIFIGGGAAGRFGSAYLRAMGGRQ 68
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 28.8 bits (63), Expect = 1.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKV 162
V+++G+G +G AV A KV
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKV 49
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 28.8 bits (64), Expect = 1.2
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 134 IRNKRVLVVGAGNSGCDIA 152
+ + V ++ A +G +I
Sbjct: 23 LESAHVCLINATATGTEIL 41
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 28.5 bits (62), Expect = 1.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 136 NKRVLVVGAGNSGCDIAVDASHHSEKV 162
KRV+V+G+G G A+ + V
Sbjct: 6 QKRVVVLGSGVIGLSSALILARKGYSV 32
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 28.7 bits (64), Expect = 1.4
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 105 AQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLV 141
++V + EIL + ++S +++ + L+
Sbjct: 710 PEKVVNLFTFLAEEVREILAGLGFRSLNEVIGRTDLL 746
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 123
Score = 27.5 bits (60), Expect = 1.4
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI--DGKPTPQWMLQLGNK 192
V+V+G+G G + A + +KV + M
Sbjct: 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 88
Query: 193 F 193
Sbjct: 89 I 89
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 28.0 bits (61), Expect = 1.4
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPT 182
+K V+G GN G A + + V G
Sbjct: 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAII 47
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 27.4 bits (60), Expect = 1.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 133 QIRNKRVLVVGAGNSGCDIA 152
Q+R++ L+VG G+ A
Sbjct: 9 QLRDRDCLIVGGGDVAERKA 28
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 126
Score = 27.5 bits (61), Expect = 1.5
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 12/77 (15%)
Query: 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPK-FIDGKPTPQWMLQLGNKF 193
R + +VG G G +A G + + F D P G
Sbjct: 2 RKWGLCIVGMGRLGSALA-----------DYPGFGESFELRGFFDVDPEKVGRPVRGGVI 50
Query: 194 SSKEETMAYIKQVFKLA 210
+ + ++A
Sbjct: 51 EHVDLLPQRVPGRIEIA 67
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
[TaxId: 6239]}
Length = 395
Score = 28.6 bits (63), Expect = 1.5
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 23 HLISPKFNTQVPDYPMPD-NYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE 81
H I + + + P +P + ML++ +Y ++ + + +L Q
Sbjct: 286 HFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFLNYLREQGNTRENELYKKSEDLVQET 345
Query: 82 DIW 84
+
Sbjct: 346 LPF 348
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 28.5 bits (62), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKV 162
V+VVG+G +G A+ A+ KV
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKV 42
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 28.4 bits (62), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKV 162
VLVVGAG++G + ++ A V
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANV 45
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 27.8 bits (60), Expect = 1.8
Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 5/141 (3%)
Query: 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE 197
+V++VG G G ++A S E V + YY K + ++ + S +
Sbjct: 2 KVVIVGNGPGGFELAKQLSQTYE-VTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG 257
++ +D + + ++ +L L + +
Sbjct: 61 WYRKRGIEIRLAEEAKLIDR--GRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGR 118
Query: 258 NIVHFVDDTHIEVDTIIYATG 278
+DD +YA G
Sbjct: 119 G--ILIDDNFRTSAKDVYAIG 137
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 28.3 bits (61), Expect = 2.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKV 162
KRV V+GAG SG A H V
Sbjct: 2 KRVAVIGAGVSGLAAAYKLKIHGLNV 27
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 28.2 bits (61), Expect = 2.1
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKV 162
E L K V++VGAG +G A + +V
Sbjct: 14 EEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQV 56
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 27.8 bits (61), Expect = 2.1
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 117 YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYP 174
+G + + + V V G GN G A+ S + V S RG Y P
Sbjct: 16 VCAGLAMDVLG----IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNP 71
Query: 175 KFIDGKPTPQWM 186
+ D + ++
Sbjct: 72 EGFDVEELIRYK 83
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 27.5 bits (59), Expect = 2.1
Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 138 RVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS 195
+V+V+G+ + G + + + ++ + + + L L K
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS-------AGMQLYLEGKVKD 54
Query: 196 KEETMAYIKQVFKLAGFD 213
+ + G +
Sbjct: 55 VNSVRYMTGEKMESRGVN 72
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 27.8 bits (60), Expect = 2.2
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query: 138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 171
R++++GAG G ++A RG++
Sbjct: 3 RIVIIGAGIVGTNLA----------DELVTRGWN 26
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 28.0 bits (61), Expect = 2.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEK 161
P ++ +L++G G SGC A +A++ ++
Sbjct: 16 PTEVVETDILIIGGGFSGCGAAYEAAYWAKL 46
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 27.4 bits (59), Expect = 2.4
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKV 162
V+V+GAG + + +
Sbjct: 4 APVVVLGAGLASVSFVAELRQAGYQG 29
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 27.5 bits (60), Expect = 2.5
Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 19/159 (11%)
Query: 139 VLVVGAGNSGCDIAVDASHH---------SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 189
+++GAG +G A + +K+ + F + + TP L
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ 66
Query: 190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH---GDI 246
F L G+ Y K+ ++L I
Sbjct: 67 NPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI 126
Query: 247 LPKDDIKNL-------NGNIVHFVDDTHIEVDTIIYATG 278
L + ++ + V V+ T + +I ATG
Sbjct: 127 LLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG 165
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli
[TaxId: 562]}
Length = 116
Score = 26.6 bits (58), Expect = 2.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 248 PKDDIKNLNGNI-VHFVDDTHIEVDTIIYATG 278
PK +KN +G++ + D VD +I+A G
Sbjct: 85 PKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 27.1 bits (59), Expect = 2.9
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHY 172
+ +V G+G G +A+ S +V
Sbjct: 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEV 43
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 27.2 bits (59), Expect = 3.1
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 8/116 (6%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVY------HSTRRGYHYYPKFIDGKPTPQWMLQLG 190
K+ V+GAG G IA ++ + H +G K + G+ M
Sbjct: 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAK 64
Query: 191 NKFSSKEETMAYIKQVFKLAG--FDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG 244
F + V K L + +
Sbjct: 65 MAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTS 120
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 27.3 bits (59), Expect = 3.2
Identities = 21/161 (13%), Positives = 48/161 (29%), Gaps = 20/161 (12%)
Query: 139 VLVVGAGNSGCDIAVDASHH---------SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQL 189
V+V+G G SG A+ A+ K+ + P + + +
Sbjct: 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64
Query: 190 G-----NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG 244
+ I F+ G + + + A ++++ + G
Sbjct: 65 PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLG 124
Query: 245 DILPK----DDIKNLNGNIVHFV--DDTHIEVDTIIYATGY 279
+ + I+ NG + +E + ++ A G
Sbjct: 125 VKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGG 165
>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 216
Score = 27.1 bits (59), Expect = 3.4
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHS 165
R +V+G GN D+A + + +
Sbjct: 39 GARAVVIGNGNVALDVARILLTDPDVLART 68
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 27.4 bits (59), Expect = 3.4
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKV 162
LV+G G +G AV
Sbjct: 8 SLVIGGGLAGLRAAVATQQKGLST 31
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium
falciparum [TaxId: 5833]}
Length = 117
Score = 26.3 bits (57), Expect = 3.4
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 171
K++ +VG+G ++ Y R
Sbjct: 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI 57
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 177
Score = 26.9 bits (58), Expect = 3.4
Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG-YHYYPKFIDGKPTPQWM 186
++++K +++ GAG + +A + + + + + K I K ++
Sbjct: 15 RVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFG 69
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia
fasciculata [TaxId: 5656]}
Length = 117
Score = 26.3 bits (57), Expect = 3.6
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 259 IVHFVDDTHIEVDTIIYATG 278
V F + D ++ A G
Sbjct: 97 HVVFESGAEADYDVVMLAIG 116
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 26.5 bits (58), Expect = 3.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 129 KSPDQIRNKRVLVVGAGNSGCDIA 152
+ + N ++ VVG G G A
Sbjct: 13 EEEATVPNNKITVVGVGQVGMACA 36
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 27.2 bits (59), Expect = 4.0
Identities = 24/180 (13%), Positives = 47/180 (26%), Gaps = 29/180 (16%)
Query: 128 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML 187
+K D+ V++VGAG+SG A Y + I+ P
Sbjct: 42 FKDLDKFAVSDVIIVGAGSSGLSAA----------YVIAKNRPDLKVCIIESSVAPGGGS 91
Query: 188 QLGNKFSSKEETMAYIKQVFKLAGFD--------GVDYGLKKPDHPLDAAHPIMNSQILY 239
LG + S + V + L + N ++
Sbjct: 92 WLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFN 151
Query: 240 HIGHGDILPKDDIKNLNGNIVHFV-----------DDTHIEVDTIIYATGYNRHFPFIDK 288
D++ + + + V ++ + I A N + +
Sbjct: 152 ATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQ 211
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 26.7 bits (58), Expect = 4.3
Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN 191
I K V + G GN G A KV + Y K +G G
Sbjct: 27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRK--EGLNVELIQKNKGL 84
Query: 192 KFSSKEETMAY 202
+ E
Sbjct: 85 TGPALVELFTT 95
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein
HI0607 {Haemophilus influenzae [TaxId: 727]}
Length = 167
Score = 26.4 bits (57), Expect = 4.4
Identities = 6/52 (11%), Positives = 13/52 (25%)
Query: 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWM 186
+N +V+V G+G + + + R
Sbjct: 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYIN 67
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 207
Score = 26.6 bits (58), Expect = 4.4
Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 29/186 (15%)
Query: 147 SGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ- 205
G +A+D + + S R + G+ T + +T+ ++
Sbjct: 19 KGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVF-------YKTIHLLEND 71
Query: 206 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDD 265
+ + FDG LK+ + + + + K+D +
Sbjct: 72 ITPIWVFDGEPPKLKEKTR-----KVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYL 126
Query: 266 THIEVDTIIYATGYNRHFPFIDKEKLEW-------KLGIP--------DLFIHIAPRNLD 310
T V+ Y P+++ K G D ++ APR +
Sbjct: 127 TPKMVENCKYLL-SLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVR 185
Query: 311 NIFFFG 316
N+
Sbjct: 186 NLTTTK 191
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 26.8 bits (58), Expect = 4.7
Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 15/154 (9%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTP--QWMLQLGNKFSSK 196
V+++G G +G A+ A+ ++ + + +
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTA------------CVEKRGKLGGTCLNVGCIPSKAL 55
Query: 197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN 256
Q+ A G+D + + ++ G + K+ +
Sbjct: 56 LNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYK 115
Query: 257 GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEK 290
GN F D+T I V + G + +D +
Sbjct: 116 GN-GSFEDETKIRVTPVDGLEGTVKEDHILDVKN 148
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
[TaxId: 10665]}
Length = 241
Score = 26.5 bits (58), Expect = 4.8
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 10/32 (31%)
Query: 257 GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDK 288
G+I+ V H+ Y+RHF +D
Sbjct: 206 GSIIWNVGSLHV----------YSRHFYLVDH 227
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas
putida [TaxId: 303]}
Length = 133
Score = 26.0 bits (56), Expect = 5.0
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFID 178
+ R++V+G G G ++A A + V
Sbjct: 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAP 77
Score = 26.0 bits (56), Expect = 5.7
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 230 HPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATG 278
H + + G + V D T + D +I G
Sbjct: 85 HLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 449
Score = 26.8 bits (57), Expect = 5.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 135 RNKRVLVVGAGNSGCDIAVDASHHSEKV 162
+ +V+++G+G SG A V
Sbjct: 4 KTGKVIIIGSGVSGLAAARQLQSFGMDV 31
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 26.8 bits (58), Expect = 5.1
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 128 YKSPDQIRNKR--VLVVGAGNSGCDIA 152
P + + ++ G G +G A
Sbjct: 7 LTDPKDVSGRTVDYIIAGGGLTGLTTA 33
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 26.5 bits (57), Expect = 5.4
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 5/133 (3%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 198
V+V+GAG G A+ ++ K + Y K + + +
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEK----YKGKEGKTALGGTCLNVGCIPSKALLD 61
Query: 199 TMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGN 258
+ + + G+ G D P A + L G ++ + + G+
Sbjct: 62 SSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTG-GVASLIKANGVTLFEGH 120
Query: 259 IVHFVDDTHIEVD 271
Sbjct: 121 GKLLAGKKVEVTA 133
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 26.2 bits (57), Expect = 5.4
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 141 VVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKP 181
+ G G GC + + + + + Y F +
Sbjct: 127 MTGGGFGGCTVTLLEASAAPHAMRHIQEHYGGTATFYLSQA 167
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 26.1 bits (57), Expect = 5.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 130 SPDQIRNKRVLVVGAGNSGCDIA 152
D++ ++ VVG G+ G A
Sbjct: 13 PEDKLSRCKITVVGVGDVGMACA 35
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 115
Score = 25.5 bits (55), Expect = 5.7
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 118 FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI 177
G ++ S + +P + + ++VVG G G ++ A P +
Sbjct: 4 LGGPVISSTEALAPKAL-PQHLVVVGGGYIGLEL-GIAYRKLGAQVSVVEARERILPTYD 61
Query: 178 DGKPTPQW 185
P
Sbjct: 62 SELTAPVA 69
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 26.3 bits (56), Expect = 5.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 137 KRVLVVGAGNSGCDIA 152
++V+VVG G G A
Sbjct: 3 RKVVVVGGGTGGATAA 18
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 26.4 bits (57), Expect = 6.2
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKV 162
+R +V+GAG +G A+ S +
Sbjct: 4 PVREFDAVVIGAGGAGMRAALQISQSGQTC 33
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 26.1 bits (56), Expect = 6.3
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK 196
K VL++G+G + KV + R K G + N ++
Sbjct: 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT-LESAKKLSAGVQHSTPISLDVNDDAAL 61
Query: 197 EETMAYIKQVFKLAGFDGVDYGLKK 221
+ +A V L + +K
Sbjct: 62 DAEVAKHDLVISLIPYTFHATVIKS 86
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 26.4 bits (57), Expect = 6.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 139 VLVVGAGNSGCDIAVDASHHSEKV 162
LVVGAG G A+ A+ +KV
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKV 29
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 26.4 bits (57), Expect = 7.1
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 130 SPDQIRNKR--VLVVGAGNSGCDIA 152
P ++ K ++ G G +G +A
Sbjct: 16 DPSKVAGKTYDYIIAGGGLTGLTVA 40
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 26.0 bits (56), Expect = 7.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 137 KRVLVVGAGNSGCDIA 152
K V V+G G G IA
Sbjct: 5 KHVTVIGGGLMGAGIA 20
>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia
coli [TaxId: 562]}
Length = 186
Score = 25.8 bits (56), Expect = 7.8
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 69 IFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYF 118
+ + + +E ++E SNG ++ Y+ + + V P +
Sbjct: 17 VARSRLFTVES----VDLEFSNGVRRVYERMRP-TNREAVMIVPIVDDHL 61
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE
{Haemophilus influenzae [TaxId: 727]}
Length = 171
Score = 25.7 bits (55), Expect = 7.9
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVY---HSTRRGYHYYPKFIDGKPTPQWMLQ 188
N+ VL++GAG + + + + + + + +F +
Sbjct: 16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD 73
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase
{Neisseria meningitidis [TaxId: 487]}
Length = 125
Score = 25.2 bits (54), Expect = 8.0
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG-YHYYPKFIDGKPTPQWMLQLGNKFSS 195
++L++G G G ++ S ++ K + +
Sbjct: 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMV 86
Query: 196 KEETMA 201
+T+A
Sbjct: 87 NTKTVA 92
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 25.5 bits (55), Expect = 9.0
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYY 173
+ ++ ++ + VLV G G G +A A+ ++ +
Sbjct: 13 MKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVA 64
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 25.7 bits (55), Expect = 9.3
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFID 178
I+ K ++++GAG + I + K R ++ K +
Sbjct: 16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.444
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,677,250
Number of extensions: 85688
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 119
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)