BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2347
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila melanogaster GN=Rsf1 PE=1
SV=1
Length = 197
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 66/76 (86%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM 66
+RGTRVYVG LT+ VKK+DLE EF K+GKLNSVW+AFNPPGFAFVEF ++ DAE ACD +
Sbjct: 4 QRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDIL 63
Query: 67 NDQDLMGSKLRVEISR 82
N +L+GS+LRVEIS+
Sbjct: 64 NGSELLGSQLRVEISK 79
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
RVYVG L V +LE EF FG L SVWVA PPGFAF++F ++ DA+ A +
Sbjct: 2 ARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAI-----R 56
Query: 70 DLMGSK-LRVEISRGRGRGRGGGGRGGRFDSR 100
D+ G RVE+SR GRGG R G +S+
Sbjct: 57 DIDGKNGWRVELSRNASSGRGGRDRYGSSESK 88
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMND 68
+VYVG L + K ++E F K+G L +VWVA NPPGFAFVEF ++ DAE A +++
Sbjct: 10 ACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDG 69
Query: 69 QDLMGSKLRVEI 80
G+++RVE+
Sbjct: 70 TRCCGTRIRVEM 81
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVGGL ++LE F++FG++ VWVA PPGFAFVE+ + DAE A +++
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 71 LMGSKLRVEIS 81
+ G + RVE+S
Sbjct: 64 ICGVRARVELS 74
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis
thaliana GN=RSZ22 PE=1 SV=1
Length = 200
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMN 67
+RVYVG L V + +LE EF FG + SVWVA PPG+AF++F + DA A +++
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALD 59
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis
thaliana GN=RSZ22A PE=1 SV=1
Length = 196
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAA 62
+RVYVG L V + +LE EF FG + SVWVA PPG+AF++F + DA A
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDA 54
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP--PGFAFVEFSNQIDAEAACDSMN 67
R+YVG L ++ +D+E F K+G + + + P FAFVEF + DAE A + +
Sbjct: 15 CRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARD 74
Query: 68 DQDLMGSKLRVEISRG 83
D G +LRVE R
Sbjct: 75 GYDYDGYRLRVEFPRS 90
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
+++VGGL+ ++ LE F K+G+++ V V + GF FV F N DA+ A +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 66 MNDQDLMGSKLRVEISRGRGRGRGGGGRGG 95
MN + + G ++RV+ + R G RGG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
+++VGGL+ ++ LE F K+G+++ V V + GF FV F N DA+ A +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 66 MNDQDLMGSKLRVEISRGRGRGRGGGGRGG 95
MN + + G ++RV+ + R G RGG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
+++VGGL+ ++ LE F K+G+++ V V + GF FV F N DA+ A +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 66 MNDQDLMGSKLRVEISRGRGRGRGGGGRGG 95
MN + + G ++RV+ + R G RGG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1
OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMND 68
R+Y+G LT V ++D+E F +G++ V + GF FVEF ++ DAE A +N
Sbjct: 2 AARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNG 58
Query: 69 QDLMGSKLRVEISR 82
++L G ++ ++ S+
Sbjct: 59 KELGGERVILDYSK 72
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
+++VGGL +E LE F K+G++ V V + GF FV F N DA+ A +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 66 MNDQDLMGSKLRVE 79
MN + + G ++RV+
Sbjct: 67 MNGKSVDGRQIRVD 80
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 1 MSDGMMERG------TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP--PGFAFVE 52
MS G + RG R+YVG L ++ +D+E F K+G + + + P FAFVE
Sbjct: 1 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 53 FSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83
F + DAE A + D G +LRVE R
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 91
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
++++GGL +E LE F K+G+++ V V + GF FV F N DA+ A +
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 66 MNDQDLMGSKLRVE 79
MN + + G ++RV+
Sbjct: 66 MNGKAVDGRQIRVD 79
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
++++GGL ++ LE F K+G+++ V V + GF FV F N DA+ A +
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 66 MNDQDLMGSKLRVE 79
MN + + G ++RV+
Sbjct: 66 MNGKSVDGRQIRVD 79
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
+++VGGL ++ LE F FG ++ V V + GF F+ F+N A A +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 66 MNDQDLMGSKLRVE 79
MN + L G ++RV+
Sbjct: 67 MNGESLDGRQIRVD 80
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 7 ERGTR-VYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEA 61
ER ++ + V L+ +E L+ E F K S+ + N P G+AFVEF DA+
Sbjct: 457 ERESKTLIVNNLSYAASEETLQ---ELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKE 513
Query: 62 ACDSMNDQDLMGSKLRVEISRGRGRGRGGGGRGGRFDSRGGRGGYRGGGGGYGGGGYRDG 121
A +S N+ ++ G +R+E S + RGG F+ + RG R+
Sbjct: 514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGG-FNQQSKTLFVRGLSEDTTEETLRES 572
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAF----NPPGFAFVEFSNQIDAEAA 62
++ ++V GL+E +E L FE G +++ V + GF FV+FS+ DA+AA
Sbjct: 550 QQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
Query: 63 CDSMNDQDLMGSKLRVEISRGRG 85
++M D ++ G+K+ ++ ++ +G
Sbjct: 608 KEAMEDGEIDGNKVTLDFAKPKG 630
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 34/170 (20%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
+++VGGL+ ++ LE F K+G+++ V V + GF FV F N DA+ A +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 66 MNDQDLMGSKLRVEISRGRGRGRGGGGRGGR---------------------FDSRGGRG 104
MN + + G ++RV+ + R G RGG D G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGN 126
Query: 105 GYRGGGGGYGGGGYRDGGDRFGGGGRGRGDGGFRGSRGGGGYRGGRDEYG 154
+ GGYGG D + + GG+ GG YR D Y
Sbjct: 127 RFESRSGGYGGSR-----DYYSSRSQS---GGYSDRSSGGSYRDSYDSYA 168
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 34/170 (20%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
+++VGGL+ ++ LE F K+G+++ V V + GF FV F N DA+ A +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 66 MNDQDLMGSKLRVEISRGRGRGRGGGGRGGR---------------------FDSRGGRG 104
MN + + G ++RV+ + R G RGG D G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGN 126
Query: 105 GYRGGGGGYGGGGYRDGGDRFGGGGRGRGDGGFRGSRGGGGYRGGRDEYG 154
+ GGYGG D + + GG+ GG YR D Y
Sbjct: 127 RFESRSGGYGGSR-----DYYSSRSQS---GGYSDRSSGGSYRDSYDSYA 168
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 31 EKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81
E F K S+ + N GFAF+EFS+ DA+ A DS N+ ++ G +R+E S
Sbjct: 433 EVFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFS 486
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 12 VYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP---P-GFAFVEFSNQIDAEAACDSMN 67
+ + L+ + KE LE E F K + V NP P G+AF+EF++ DA+ A +S N
Sbjct: 489 LVLSNLSYSATKETLE---EVFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCN 545
Query: 68 DQDLMGSKLRVEI 80
++ G +R+E+
Sbjct: 546 KMEIEGRTIRLEL 558
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 14/84 (16%)
Query: 11 RVYVGGLT-ETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQ--IDAEAA 62
+++VGGL+ ET +KE L F K+G++ S+ V +P GFAF+ F+N ID +A
Sbjct: 57 KLFVGGLSWETTEKE-LRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 63 CDSMNDQDLMGSKLRVEISRGRGR 86
D+ ++ SK +V+ + + R
Sbjct: 116 A----DEHIINSK-KVDPKKAKAR 134
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEF-SNQI 57
+++VGGLT + E+++ F +FG + V + F+ GF F+ F S Q+
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQV 189
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEAACDS 65
+++VGG+ E +++ DL F+++G + S + + GFAFVEF + + C S
Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLS 168
Query: 66 MNDQ 69
N Q
Sbjct: 169 RNHQ 172
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus
oedipus GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ +E L +E++GKL V +P GF FV FS+ + +A
Sbjct: 6 EQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 65
Query: 62 AC 63
A
Sbjct: 66 AM 67
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 12 VYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP----PGFAFVEFSNQIDAEAACDSMN 67
+ + L+ + +E L+ E F K + V NP G+AF+EF++ DA+ A +S N
Sbjct: 491 LVLSNLSYSATEETLQ---EVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 547
Query: 68 DQDLMGSKLRVEI--SRGRGRGRGGGGR 93
++ G +R+E+ RG R +
Sbjct: 548 KMEIEGRTIRLELQGPRGSPNARSQPSK 575
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 12 VYVGGLTETVKKEDLELEFEKFGKLNSVWVAF----NPPGFAFVEFSNQIDAEAACDSMN 67
++V GL+E +E L+ FE G + + V + GF FV+F+++ DA+AA ++M
Sbjct: 577 LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 634
Query: 68 DQDLMGSKLRVEISRGRG 85
D ++ G+K+ ++ ++ +G
Sbjct: 635 DGEIDGNKVTLDWAKPKG 652
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ +E L +E++GKL V +P GF FV FS+ + +A
Sbjct: 6 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 65
Query: 62 AC 63
A
Sbjct: 66 AM 67
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus
norvegicus GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ +E L +E++GKL V +P GF FV FS+ + +A
Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77
Query: 62 AC 63
A
Sbjct: 78 AM 79
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ +E L +E++GKL V +P GF FV FS+ + +A
Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77
Query: 62 AC 63
A
Sbjct: 78 AM 79
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ +E L +E++GKL V +P GF FV FS+ + +A
Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77
Query: 62 AC 63
A
Sbjct: 78 AM 79
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ +E L +E++GKL V +P GF FV FS+ + +A
Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77
Query: 62 AC 63
A
Sbjct: 78 AM 79
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACD 64
+++++GG+ ++ ++ L F K+G++ V + GF FV F++ A +A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 65 SMNDQDLMGSKLRVEISRGR 84
+++ +DL G ++V + R
Sbjct: 100 ALDGRDLHGRVVKVNYANDR 119
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEAA 62
++++GGL + L FE FG L V NP F FV +SN +A+AA
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEAA 62
++++GGL + L FE FG L V NP F FV +SN +A+AA
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 11 RVYVGGLTETVKKEDLELEF-EKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEAA 62
+++VGGLT +DL EF +FG++ + V +P GF FV FS + + +AA
Sbjct: 24 KIFVGGLTSNT-TDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA 80
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAAC-- 63
+++VGG+ E +++ L FE++GK+ + + + GFAFV F + +
Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165
Query: 64 --DSMNDQDLMGSKLRVEISRGRGRGRGGGGRGGRFDSRGGRGGY 106
++N+ + S++R +S+ G R RGG G Y
Sbjct: 166 KYHTVNNHN---SQVRKALSKQEMASVSGSQR-----ERGGSGNY 202
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQ 56
+++VGG+ E ++ L FE++GK++S+ + + GFAFV F +
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDH 151
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFS--NQIDA 59
E+ ++++GGL+ +E L +E++G L V +P GF FV FS N++DA
Sbjct: 6 EQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA 65
Query: 60 EAAC 63
A
Sbjct: 66 AMAT 69
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI--SRGRGRGRGGGGR 93
G+AF+EF++ DA+ A +S N ++ G +R+E+ RG R +
Sbjct: 524 GYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSK 572
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 12 VYVGGLTETVKKEDLELEFEKFGKLNSVWVAF----NPPGFAFVEFSNQIDAEAACDSMN 67
++V GL+E +E L+ FE G + + V + GF FV+F+++ DA+AA ++M
Sbjct: 574 LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 631
Query: 68 DQDLMGSKLRVEISRGRG 85
D ++ G+K+ ++ ++ +G
Sbjct: 632 DGEIDGNKVTLDWAKPKG 649
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
R +VGGL E LE F FG++ V + GF FV FS++ A ++
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 66 MNDQDLMGSKLRV 78
MN ++L G + V
Sbjct: 69 MNGKELDGRNITV 81
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI--SRGRGRGRGGGGR 93
G+AF+EF++ DA+ A +S N +++ G +R+E+ RG R +
Sbjct: 526 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSK 574
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 30/39 (76%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85
GF FV+F+++ DA+AA ++M D ++ G+K+ ++ ++ +G
Sbjct: 613 GFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 651
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI--SRGRGRGRGGGGR 93
G+AF+EF++ DA+ A +S N +++ G +R+E+ RG R +
Sbjct: 524 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSK 572
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 30/39 (76%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85
GF FV+F+++ DA+AA ++M D ++ G+K+ ++ ++ +G
Sbjct: 611 GFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 649
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDS 65
R+YVG L+ V LE F + GK+ V ++ GF FV S+ + + A +S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 66 MNDQDLMGSKLRVEISRGR 84
+N DL G ++RV + R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ E L FE++G L V +P GF FV ++ + +A
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 62 ACDS 65
A ++
Sbjct: 71 AMNA 74
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQ 56
+++VGG+ E ++ L FE++GK+ + + + GFAFV F +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ E L FE++G L V +P GF FV ++ + +A
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 62 ACDS 65
A ++
Sbjct: 71 AMNA 74
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQ 56
+++VGG+ E ++ L FE++GK+ + + + GFAFV F +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus
GN=HNRNPA1 PE=1 SV=2
Length = 320
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ E L FE++G L V +P GF FV ++ + +A
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 62 ACDS 65
A ++
Sbjct: 71 AMNA 74
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQ 56
+++VGG+ E ++ L FE++GK+ + + + GFAFV F +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ E L FE++G L V +P GF FV ++ + +A
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 62 ACDS 65
A ++
Sbjct: 71 AMNT 74
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQ 56
+++VGG+ E ++ L FE++GK+ + + + GFAFV F +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI--SRGRGRGRGGGGR 93
G+AF+EF++ DA+ A +S N +++ G +R+E+ RG R +
Sbjct: 525 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSK 573
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 30/39 (76%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85
GF FV+F+++ DA+AA ++M D ++ G+K+ ++ ++ +G
Sbjct: 612 GFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 650
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ E L FE++G L V +P GF FV ++ + +A
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 62 ACDS 65
A ++
Sbjct: 71 AMNA 74
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFS--NQIDA 59
E+ ++++GGL+ +E L +E++G+L V +P GF FV FS N++DA
Sbjct: 6 EQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA 65
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDA 59
M E R +VGGL E LE F +FG + + + GF FV F ++
Sbjct: 1 MAEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSM 60
Query: 60 EAACDSMNDQDLMGSKLRV 78
A + MN Q+L G + V
Sbjct: 61 RDAIEGMNGQELDGRNITV 79
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFS--NQIDA 59
E+ ++++GGL+ + L FE++GKL V +P GF FV +S ++DA
Sbjct: 24 EQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA 83
Query: 60 EAA 62
+
Sbjct: 84 SMS 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.149 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,486,423
Number of Sequences: 539616
Number of extensions: 7969586
Number of successful extensions: 169545
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2098
Number of HSP's successfully gapped in prelim test: 1617
Number of HSP's that attempted gapping in prelim test: 34800
Number of HSP's gapped (non-prelim): 41091
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)