Query psy2347
Match_columns 207
No_of_seqs 422 out of 2324
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 22:41:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.3E-22 4.3E-27 145.5 10.3 80 4-83 14-98 (99)
2 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.7E-22 5.9E-27 155.5 11.3 84 5-88 35-123 (156)
3 1x4c_A Splicing factor, argini 99.9 1.6E-21 5.3E-26 141.5 13.1 83 6-90 12-99 (108)
4 1x4a_A Splicing factor, argini 99.9 9.6E-22 3.3E-26 142.6 11.8 83 5-87 18-102 (109)
5 1whw_A Hypothetical protein ri 99.9 1.8E-21 6E-26 138.6 12.9 86 5-90 4-94 (99)
6 1x5s_A Cold-inducible RNA-bind 99.9 8.7E-22 3E-26 140.9 11.3 87 3-89 6-97 (102)
7 2dnz_A Probable RNA-binding pr 99.9 1.9E-21 6.5E-26 137.3 12.0 83 6-88 2-89 (95)
8 2cqi_A Nucleolysin TIAR; RNA r 99.9 3.4E-21 1.2E-25 138.2 12.9 85 5-89 11-98 (103)
9 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1E-21 3.5E-26 140.5 10.2 87 3-89 6-97 (102)
10 1x5t_A Splicing factor 3B subu 99.9 1.5E-21 5E-26 138.1 10.8 85 6-90 2-92 (96)
11 2cq3_A RNA-binding protein 9; 99.9 3.7E-21 1.3E-25 138.0 12.8 86 4-89 10-98 (103)
12 2dgs_A DAZ-associated protein 99.9 2.9E-21 1E-25 137.6 12.0 85 4-89 5-94 (99)
13 1why_A Hypothetical protein ri 99.9 2E-21 6.9E-26 138.0 11.0 83 4-87 12-96 (97)
14 1x5u_A Splicing factor 3B subu 99.9 2.5E-21 8.4E-26 139.3 11.5 85 5-89 11-100 (105)
15 1sjq_A Polypyrimidine tract-bi 99.9 9.7E-22 3.3E-26 142.4 9.3 84 4-88 11-96 (105)
16 2dgu_A Heterogeneous nuclear r 99.9 5.5E-21 1.9E-25 137.3 12.9 84 4-90 6-89 (103)
17 2do4_A Squamous cell carcinoma 99.9 3E-21 1E-25 137.7 11.1 83 5-87 13-99 (100)
18 2dgx_A KIAA0430 protein; RRM d 99.9 3.5E-21 1.2E-25 136.8 11.3 86 2-87 2-93 (96)
19 1u6f_A Tcubp1, RNA-binding pro 99.9 3.9E-21 1.3E-25 145.0 12.2 85 5-89 38-127 (139)
20 2cqd_A RNA-binding region cont 99.9 9.1E-21 3.1E-25 138.8 13.8 84 3-87 11-99 (116)
21 2dgt_A RNA-binding protein 30; 99.9 5.6E-21 1.9E-25 134.4 12.2 84 3-89 4-87 (92)
22 2cq0_A Eukaryotic translation 99.9 1.9E-21 6.5E-26 139.5 9.7 85 5-89 11-100 (103)
23 2dnm_A SRP46 splicing factor; 99.9 2E-21 7E-26 139.3 9.6 86 4-89 8-98 (103)
24 4f25_A Polyadenylate-binding p 99.9 1.6E-21 5.4E-26 143.2 9.2 80 8-87 4-86 (115)
25 2dnh_A Bruno-like 5, RNA bindi 99.9 4E-21 1.4E-25 138.2 11.0 85 5-89 11-102 (105)
26 2d9p_A Polyadenylate-binding p 99.9 2.6E-21 9E-26 138.7 10.0 87 4-90 10-99 (103)
27 2cpz_A CUG triplet repeat RNA- 99.9 2.8E-21 9.7E-26 141.4 10.3 84 6-89 22-110 (115)
28 3s8s_A Histone-lysine N-methyl 99.9 2.5E-21 8.6E-26 141.3 9.9 80 6-85 3-87 (110)
29 2e5h_A Zinc finger CCHC-type a 99.9 3.7E-21 1.3E-25 135.5 10.4 82 1-82 8-94 (94)
30 3r27_A HnRNP L, heterogeneous 99.9 2.8E-21 9.5E-26 138.8 9.8 81 4-85 16-98 (100)
31 2lxi_A RNA-binding protein 10; 99.9 8.1E-22 2.8E-26 139.1 6.8 79 9-87 1-86 (91)
32 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.5E-21 8.6E-26 134.4 9.2 80 6-85 3-87 (87)
33 2cpe_A RNA-binding protein EWS 99.9 3.6E-21 1.2E-25 140.3 10.3 87 2-88 8-107 (113)
34 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-20 4.8E-25 137.5 13.3 86 4-89 10-100 (115)
35 2dnq_A RNA-binding protein 4B; 99.8 8.8E-21 3E-25 132.9 11.6 81 5-88 4-84 (90)
36 3ex7_B RNA-binding protein 8A; 99.8 3.9E-21 1.3E-25 142.7 10.2 85 5-89 18-107 (126)
37 1x4h_A RNA-binding protein 28; 99.8 9.7E-21 3.3E-25 137.3 11.8 85 5-89 11-106 (111)
38 1x4d_A Matrin 3; structural ge 99.8 3.1E-21 1.1E-25 139.2 8.7 81 5-86 11-94 (102)
39 2cq1_A PTB-like protein L; RRM 99.8 9.7E-21 3.3E-25 136.3 11.1 83 5-88 11-95 (101)
40 2dnp_A RNA-binding protein 14; 99.8 9.9E-21 3.4E-25 132.6 10.8 83 3-88 3-85 (90)
41 3md1_A Nuclear and cytoplasmic 99.8 6.7E-21 2.3E-25 131.1 9.7 77 9-85 1-82 (83)
42 2dgp_A Bruno-like 4, RNA bindi 99.8 9.1E-21 3.1E-25 136.5 10.6 85 4-88 8-100 (106)
43 2cph_A RNA binding motif prote 99.8 1.4E-20 4.7E-25 135.6 11.5 84 5-88 11-101 (107)
44 2dgv_A HnRNP M, heterogeneous 99.8 8.4E-21 2.9E-25 133.2 10.0 83 5-87 4-89 (92)
45 1wex_A Hypothetical protein (r 99.8 8.2E-21 2.8E-25 137.4 10.1 83 5-88 11-95 (104)
46 2cpd_A Apobec-1 stimulating pr 99.8 2.7E-20 9.4E-25 132.6 12.7 82 3-87 9-92 (99)
47 2fy1_A RNA-binding motif prote 99.8 2.3E-20 8E-25 137.2 12.5 82 6-87 4-89 (116)
48 2cpf_A RNA binding motif prote 99.8 1.5E-20 5.2E-25 133.5 11.1 84 6-89 2-93 (98)
49 2cpj_A Non-POU domain-containi 99.8 9.5E-21 3.2E-25 135.0 10.1 83 4-87 10-92 (99)
50 4a8x_A RNA-binding protein wit 99.8 1.2E-20 4E-25 131.1 10.3 80 7-86 2-87 (88)
51 2dh8_A DAZ-associated protein 99.8 5.4E-21 1.8E-25 137.6 8.7 86 3-89 10-100 (105)
52 2ad9_A Polypyrimidine tract-bi 99.8 8E-21 2.7E-25 140.6 9.7 83 5-88 27-111 (119)
53 2div_A TRNA selenocysteine ass 99.8 9.7E-21 3.3E-25 134.7 9.7 84 3-86 3-96 (99)
54 2do0_A HnRNP M, heterogeneous 99.8 3.8E-20 1.3E-24 134.9 13.0 83 5-87 11-97 (114)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-20 3.5E-25 130.8 9.3 78 5-82 3-85 (85)
56 2e5j_A Methenyltetrahydrofolat 99.8 1.1E-20 3.6E-25 134.3 9.6 81 5-86 15-96 (97)
57 2jvr_A Nucleolar protein 3; RN 99.8 7.3E-21 2.5E-25 139.3 8.9 82 5-86 24-107 (111)
58 2dng_A Eukaryotic translation 99.8 1.7E-20 5.7E-25 134.6 10.6 82 5-88 11-97 (103)
59 2dhg_A TRNA selenocysteine ass 99.8 1.4E-20 4.7E-25 135.1 10.1 86 4-89 4-95 (104)
60 1wi8_A EIF-4B, eukaryotic tran 99.8 1.7E-20 5.8E-25 134.8 10.5 82 5-88 11-98 (104)
61 1oo0_B CG8781-PA, drosophila Y 99.8 1.4E-20 4.7E-25 136.5 10.1 82 6-87 23-109 (110)
62 2cqc_A Arginine/serine-rich sp 99.8 1.2E-20 4.3E-25 132.9 9.5 80 4-83 10-94 (95)
63 1p27_B RNA-binding protein 8A; 99.8 1.2E-20 4.1E-25 135.9 9.5 80 7-86 21-105 (106)
64 1x4g_A Nucleolysin TIAR; struc 99.8 2.9E-20 9.9E-25 134.8 11.5 82 6-88 22-103 (109)
65 2err_A Ataxin-2-binding protei 99.8 1E-20 3.5E-25 137.5 9.1 83 3-85 23-108 (109)
66 2x1f_A MRNA 3'-END-processing 99.8 2E-20 6.8E-25 132.6 10.3 79 8-86 1-84 (96)
67 2cpi_A CCR4-NOT transcription 99.8 9.6E-21 3.3E-25 138.0 8.8 84 4-87 10-104 (111)
68 2hvz_A Splicing factor, argini 99.8 1E-20 3.5E-25 135.2 8.7 79 10-88 1-79 (101)
69 2dgw_A Probable RNA-binding pr 99.8 2.8E-20 9.5E-25 130.5 10.8 82 4-87 5-90 (91)
70 2ywk_A Putative RNA-binding pr 99.8 9.2E-21 3.1E-25 133.7 8.3 80 4-83 11-94 (95)
71 2lkz_A RNA-binding protein 5; 99.8 5.5E-21 1.9E-25 136.1 7.0 83 1-83 1-94 (95)
72 2wbr_A GW182, gawky, LD47780P; 99.8 2.3E-20 7.7E-25 130.5 9.4 76 7-83 5-80 (89)
73 2kxn_B Transformer-2 protein h 99.8 1.6E-20 5.3E-25 140.8 8.7 82 5-86 42-128 (129)
74 3ulh_A THO complex subunit 4; 99.8 3.9E-20 1.3E-24 133.4 10.3 78 5-82 25-106 (107)
75 2ytc_A PRE-mRNA-splicing facto 99.8 4.2E-20 1.4E-24 127.7 10.0 77 5-82 8-85 (85)
76 2cqh_A IGF-II mRNA-binding pro 99.8 3.9E-20 1.3E-24 130.2 9.9 82 5-88 4-87 (93)
77 3beg_B Splicing factor, argini 99.8 1.9E-20 6.3E-25 137.5 8.3 81 7-89 14-99 (115)
78 2kvi_A Nuclear polyadenylated 99.8 3E-20 1E-24 131.8 9.0 82 5-89 6-88 (96)
79 2la4_A Nuclear and cytoplasmic 99.8 1.4E-20 4.9E-25 134.4 7.4 79 5-84 23-101 (101)
80 2fc9_A NCL protein; structure 99.8 5E-20 1.7E-24 131.6 10.1 81 4-87 10-94 (101)
81 1wf1_A RNA-binding protein RAL 99.8 4.9E-20 1.7E-24 133.8 10.1 78 7-87 25-103 (110)
82 1x4f_A Matrin 3; structural ge 99.8 2.5E-20 8.4E-25 136.6 8.1 82 5-87 21-105 (112)
83 2jrs_A RNA-binding protein 39; 99.8 4.2E-20 1.4E-24 134.2 9.0 81 5-85 22-107 (108)
84 1wez_A HnRNP H', FTP-3, hetero 99.8 2.7E-20 9.3E-25 134.0 7.9 80 5-86 11-94 (102)
85 2cqp_A RNA-binding protein 12; 99.8 1.7E-20 5.9E-25 133.2 6.7 81 5-85 11-96 (98)
86 1x4b_A Heterogeneous nuclear r 99.8 7.8E-20 2.7E-24 133.8 10.4 79 9-88 27-110 (116)
87 3p5t_L Cleavage and polyadenyl 99.8 7.5E-21 2.6E-25 133.4 4.7 78 10-87 2-86 (90)
88 2rs2_A Musashi-1, RNA-binding 99.8 8.6E-20 3E-24 132.7 10.4 82 5-87 21-107 (109)
89 2i2y_A Fusion protein consists 99.8 5.3E-20 1.8E-24 140.7 9.7 81 5-85 69-149 (150)
90 3ucg_A Polyadenylate-binding p 99.8 7.6E-20 2.6E-24 127.4 9.6 77 8-85 5-86 (89)
91 2fc8_A NCL protein; structure 99.8 5.4E-20 1.9E-24 131.5 9.0 81 4-87 10-95 (102)
92 2cqg_A TDP-43, TAR DNA-binding 99.8 1.7E-19 5.7E-24 129.3 11.3 82 5-88 11-97 (103)
93 3ns6_A Eukaryotic translation 99.8 1.1E-20 3.7E-25 135.3 5.1 79 7-85 4-94 (100)
94 2kn4_A Immunoglobulin G-bindin 99.8 1.6E-19 5.3E-24 138.9 11.9 84 6-89 67-155 (158)
95 2la6_A RNA-binding protein FUS 99.8 8.8E-20 3E-24 129.9 9.6 79 4-82 8-99 (99)
96 2khc_A Testis-specific RNP-typ 99.8 5.9E-20 2E-24 134.8 8.9 77 6-82 37-118 (118)
97 2jvo_A Nucleolar protein 3; nu 99.8 8.4E-20 2.9E-24 132.7 9.6 80 5-87 27-106 (108)
98 2cpx_A Hypothetical protein FL 99.8 1.1E-19 3.6E-24 132.7 10.1 84 6-89 22-110 (115)
99 1s79_A Lupus LA protein; RRM, 99.8 7E-20 2.4E-24 132.2 8.9 78 5-83 7-88 (103)
100 1x5p_A Negative elongation fac 99.8 3.7E-19 1.3E-23 126.3 12.5 81 5-88 11-91 (97)
101 2kt5_A RNA and export factor-b 99.8 2.8E-19 9.6E-24 132.4 12.2 83 5-87 31-117 (124)
102 2cq2_A Hypothetical protein LO 99.8 1.4E-19 4.7E-24 132.9 10.0 85 5-90 21-112 (114)
103 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-19 4.5E-24 132.3 9.9 82 5-86 4-87 (115)
104 2dis_A Unnamed protein product 99.8 1.4E-19 4.8E-24 130.8 9.8 82 6-87 5-95 (109)
105 2xnq_A Nuclear polyadenylated 99.8 2.4E-19 8.1E-24 127.7 10.8 78 5-85 18-96 (97)
106 3q2s_C Cleavage and polyadenyl 99.8 1.9E-20 6.4E-25 153.4 5.6 77 8-84 67-150 (229)
107 3d2w_A TAR DNA-binding protein 99.8 8.5E-20 2.9E-24 128.2 8.3 82 4-87 6-87 (89)
108 2lea_A Serine/arginine-rich sp 99.8 4.7E-20 1.6E-24 139.2 7.3 83 7-89 45-132 (135)
109 1x5o_A RNA binding motif, sing 99.8 1.1E-19 3.8E-24 132.5 9.1 81 4-84 20-112 (114)
110 2a3j_A U1 small nuclear ribonu 99.8 1.7E-19 5.9E-24 134.9 10.3 82 5-86 25-112 (127)
111 3pgw_S U1-70K; protein-RNA com 99.8 4.2E-19 1.4E-23 157.9 14.5 81 7-87 100-185 (437)
112 1whx_A Hypothetical protein ri 99.8 6.9E-20 2.4E-24 133.7 7.7 78 7-85 8-85 (111)
113 2db1_A Heterogeneous nuclear r 99.8 4.2E-20 1.4E-24 136.2 6.6 80 5-85 13-99 (118)
114 3n9u_C Cleavage and polyadenyl 99.8 1.2E-19 4.1E-24 140.3 9.4 77 8-84 54-137 (156)
115 2jwn_A Embryonic polyadenylate 99.8 1.7E-19 5.9E-24 133.4 9.9 79 9-88 36-119 (124)
116 2ek1_A RNA-binding protein 12; 99.8 2.4E-20 8.4E-25 131.5 4.9 78 6-83 12-94 (95)
117 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.6E-19 5.5E-24 140.3 10.1 84 6-89 69-157 (165)
118 1nu4_A U1A RNA binding domain; 99.8 1.1E-19 3.7E-24 128.7 8.0 82 5-86 4-91 (97)
119 3s7r_A Heterogeneous nuclear r 99.8 2.4E-19 8.4E-24 124.5 9.7 77 4-81 6-87 (87)
120 1wg5_A Heterogeneous nuclear r 99.8 1.7E-19 6E-24 129.8 9.2 81 5-86 11-96 (104)
121 2lcw_A RNA-binding protein FUS 99.7 3.4E-21 1.2E-25 141.2 0.0 85 4-88 2-99 (116)
122 2cq4_A RNA binding motif prote 99.8 5.6E-20 1.9E-24 134.2 6.1 78 9-87 25-107 (114)
123 2cpy_A RNA-binding protein 12; 99.8 1.1E-19 3.7E-24 133.0 7.5 80 5-85 11-95 (114)
124 2hgl_A HNRPF protein, heteroge 99.8 6.4E-20 2.2E-24 138.9 6.4 81 4-85 39-126 (136)
125 1wf0_A TDP-43, TAR DNA-binding 99.8 1.1E-19 3.7E-24 126.7 6.8 81 6-88 2-82 (88)
126 1p1t_A Cleavage stimulation fa 99.8 1.4E-19 4.6E-24 129.7 7.4 80 7-86 6-90 (104)
127 1x4e_A RNA binding motif, sing 99.8 3.1E-20 1.1E-24 128.5 3.8 77 6-82 2-83 (85)
128 2e44_A Insulin-like growth fac 99.8 3.6E-19 1.2E-23 125.8 9.4 80 6-85 12-93 (96)
129 1sjr_A Polypyrimidine tract-bi 99.8 5.3E-19 1.8E-23 137.4 10.7 80 7-86 44-126 (164)
130 2dnn_A RNA-binding protein 12; 99.8 1.6E-19 5.6E-24 131.6 7.2 75 9-85 16-94 (109)
131 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.3E-19 1.8E-23 132.9 10.3 77 5-81 59-140 (140)
132 2nlw_A Eukaryotic translation 99.8 3.8E-19 1.3E-23 128.3 9.1 80 7-86 13-102 (105)
133 1fj7_A Nucleolin RBD1, protein 99.8 5.6E-20 1.9E-24 131.3 4.6 79 7-87 15-98 (101)
134 2m2b_A RNA-binding protein 10; 99.8 7.2E-20 2.4E-24 137.2 5.3 81 6-87 20-111 (131)
135 1fjc_A Nucleolin RBD2, protein 99.8 2.6E-19 9E-24 126.5 7.8 81 6-87 13-94 (96)
136 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.1E-19 3.8E-24 129.9 5.7 79 5-85 15-99 (100)
137 2mss_A Protein (musashi1); RNA 99.8 1.9E-19 6.5E-24 121.6 6.5 70 11-81 1-75 (75)
138 2e5g_A U6 snRNA-specific termi 99.8 9.8E-19 3.3E-23 123.4 10.2 82 5-88 4-86 (94)
139 3zzy_A Polypyrimidine tract-bi 99.8 7.5E-19 2.6E-23 131.8 10.0 79 8-86 27-108 (130)
140 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.7E-19 5.8E-24 122.3 5.9 71 10-81 1-76 (77)
141 2hgn_A Heterogeneous nuclear r 99.8 7.9E-20 2.7E-24 138.8 4.3 80 5-86 42-125 (139)
142 1wg1_A KIAA1579 protein, homol 99.8 3.9E-19 1.3E-23 124.1 7.5 77 7-85 3-79 (88)
143 2ki2_A SS-DNA binding protein 99.8 9.2E-20 3.1E-24 127.4 4.2 77 10-87 2-83 (90)
144 2f3j_A RNA and export factor b 99.8 1.1E-18 3.7E-23 137.5 10.3 80 6-85 85-168 (177)
145 1wel_A RNA-binding protein 12; 99.8 8.9E-20 3E-24 135.3 3.6 80 5-85 21-105 (124)
146 2lmi_A GRSF-1, G-rich sequence 99.8 1.7E-19 5.7E-24 130.6 4.7 82 3-85 5-93 (107)
147 2krb_A Eukaryotic translation 99.8 5.6E-19 1.9E-23 121.3 6.7 70 9-78 1-80 (81)
148 2e5i_A Heterogeneous nuclear r 99.8 2.8E-18 9.4E-23 127.8 10.6 76 10-86 26-104 (124)
149 3tyt_A Heterogeneous nuclear r 99.8 2E-18 6.8E-23 138.9 10.2 79 7-85 2-81 (205)
150 2hzc_A Splicing factor U2AF 65 99.8 1.9E-18 6.5E-23 119.7 8.7 73 6-80 3-86 (87)
151 2dha_A FLJ20171 protein; RRM d 99.8 6.8E-19 2.3E-23 131.0 5.7 78 7-85 21-106 (123)
152 2hgm_A HNRPF protein, heteroge 99.8 8.4E-19 2.9E-23 131.0 6.0 79 5-85 38-122 (126)
153 3egn_A RNA-binding protein 40; 99.7 2.6E-18 9E-23 130.2 8.0 82 5-86 41-132 (143)
154 4f02_A Polyadenylate-binding p 99.7 2.9E-18 9.9E-23 138.1 8.6 79 8-86 102-183 (213)
155 4f02_A Polyadenylate-binding p 99.7 4.3E-18 1.5E-22 137.1 9.6 81 5-85 11-96 (213)
156 1iqt_A AUF1, heterogeneous nuc 99.7 9.5E-19 3.2E-23 118.1 4.8 70 11-81 1-75 (75)
157 2bz2_A Negative elongation fac 99.7 5.5E-18 1.9E-22 125.6 9.1 79 6-87 36-114 (121)
158 2xs2_A Deleted in azoospermia- 99.7 1.8E-18 6.2E-23 123.6 5.2 80 6-87 6-89 (102)
159 1b7f_A Protein (SXL-lethal pro 99.7 1E-17 3.6E-22 128.5 9.7 79 8-86 2-85 (168)
160 3pgw_A U1-A; protein-RNA compl 99.7 1.6E-17 5.6E-22 138.4 11.7 85 1-85 1-91 (282)
161 1fxl_A Paraneoplastic encephal 99.7 1.4E-17 4.7E-22 127.4 10.1 79 8-86 1-84 (167)
162 2yh0_A Splicing factor U2AF 65 99.7 1.1E-17 3.6E-22 132.0 9.7 81 7-87 112-197 (198)
163 2diu_A KIAA0430 protein; struc 99.7 1.3E-17 4.6E-22 117.6 9.0 77 5-86 4-86 (96)
164 3md3_A Nuclear and cytoplasmic 99.7 1.7E-17 5.9E-22 126.7 10.2 79 5-83 83-166 (166)
165 2qfj_A FBP-interacting repress 99.7 1.7E-17 5.7E-22 132.5 10.1 82 7-88 123-209 (216)
166 3u1l_A PRE-mRNA-splicing facto 99.7 1.2E-17 4.2E-22 137.3 8.9 80 6-86 131-231 (240)
167 1l3k_A Heterogeneous nuclear r 99.7 2.5E-17 8.4E-22 129.6 9.5 83 7-90 102-189 (196)
168 2adc_A Polypyrimidine tract-bi 99.7 2.8E-17 9.7E-22 133.6 9.7 81 5-85 30-111 (229)
169 3md3_A Nuclear and cytoplasmic 99.7 3.1E-17 1.1E-21 125.3 9.0 77 10-86 1-81 (166)
170 2cjk_A Nuclear polyadenylated 99.7 1.8E-17 6.3E-22 127.2 7.6 77 8-85 86-167 (167)
171 3pgw_A U1-A; protein-RNA compl 99.7 9.5E-17 3.2E-21 133.7 11.9 77 6-82 204-281 (282)
172 2dit_A HIV TAT specific factor 99.7 1.7E-16 5.9E-21 115.6 11.8 83 5-87 11-105 (112)
173 1l3k_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 128.3 9.1 80 6-86 10-94 (196)
174 2g4b_A Splicing factor U2AF 65 99.7 5.4E-17 1.8E-21 125.1 9.1 76 7-82 92-172 (172)
175 2dnl_A Cytoplasmic polyadenyla 99.7 4.3E-17 1.5E-21 119.1 7.5 74 5-81 4-85 (114)
176 1qm9_A Polypyrimidine tract-bi 99.7 7E-17 2.4E-21 127.8 9.3 79 6-84 117-197 (198)
177 2adc_A Polypyrimidine tract-bi 99.7 1.3E-16 4.3E-21 129.8 10.5 79 6-84 148-228 (229)
178 1fje_B Nucleolin RBD12, protei 99.7 7.2E-17 2.5E-21 125.0 8.2 77 7-85 97-175 (175)
179 2qfj_A FBP-interacting repress 99.7 9.1E-17 3.1E-21 128.2 8.9 78 8-85 27-109 (216)
180 1qm9_A Polypyrimidine tract-bi 99.7 6.7E-17 2.3E-21 127.9 8.0 78 8-85 2-80 (198)
181 2pe8_A Splicing factor 45; RRM 99.7 1.7E-16 5.9E-21 114.7 9.3 79 5-83 4-93 (105)
182 3nmr_A Cugbp ELAV-like family 99.7 1.2E-16 4.1E-21 123.2 8.6 76 7-82 93-175 (175)
183 1b7f_A Protein (SXL-lethal pro 99.7 1.9E-16 6.5E-21 121.4 9.6 76 6-81 86-168 (168)
184 3nmr_A Cugbp ELAV-like family 99.7 3.1E-16 1.1E-20 120.9 8.9 79 8-86 2-90 (175)
185 3sde_A Paraspeckle component 1 99.6 3.1E-16 1E-20 130.0 9.1 78 5-83 18-95 (261)
186 1fxl_A Paraneoplastic encephal 99.6 3.7E-16 1.3E-20 119.4 8.7 75 7-81 86-167 (167)
187 2g4b_A Splicing factor U2AF 65 99.6 5.7E-16 2E-20 119.3 9.6 77 7-85 2-89 (172)
188 2voo_A Lupus LA protein; RNA-b 99.6 4.8E-16 1.6E-20 123.9 9.0 75 9-84 109-187 (193)
189 2d9o_A DNAJ (HSP40) homolog, s 99.6 3.2E-15 1.1E-19 107.2 12.1 82 6-89 7-95 (100)
190 2cjk_A Nuclear polyadenylated 99.6 3E-16 1E-20 120.3 7.2 75 8-84 2-81 (167)
191 3tyt_A Heterogeneous nuclear r 99.6 4.2E-16 1.4E-20 125.3 8.0 75 7-81 121-204 (205)
192 2yh0_A Splicing factor U2AF 65 99.6 1E-15 3.4E-20 120.5 9.7 78 7-86 2-90 (198)
193 2j8a_A Histone-lysine N-methyl 99.6 4.5E-16 1.5E-20 115.9 7.1 73 10-82 3-94 (136)
194 2ghp_A U4/U6 snRNA-associated 99.6 6.9E-16 2.4E-20 129.1 9.1 80 5-85 206-292 (292)
195 3smz_A Protein raver-1, ribonu 99.6 9.6E-16 3.3E-20 127.7 9.1 82 6-87 181-267 (284)
196 3v4m_A Splicing factor U2AF 65 99.6 2E-15 6.9E-20 109.1 8.8 78 7-84 3-97 (105)
197 1fje_B Nucleolin RBD12, protei 99.6 4.1E-16 1.4E-20 120.8 5.2 81 5-86 9-93 (175)
198 3smz_A Protein raver-1, ribonu 99.6 4.3E-15 1.5E-19 123.8 10.2 82 6-87 92-178 (284)
199 2ghp_A U4/U6 snRNA-associated 99.6 4.7E-15 1.6E-19 124.0 9.2 81 7-87 115-200 (292)
200 3tht_A Alkylated DNA repair pr 99.6 7.5E-15 2.6E-19 126.6 9.5 77 5-82 14-97 (345)
201 3ue2_A Poly(U)-binding-splicin 99.6 8.2E-15 2.8E-19 108.1 8.3 76 8-83 19-108 (118)
202 1jmt_A Splicing factor U2AF 35 99.5 3.4E-15 1.2E-19 107.7 4.6 68 14-81 20-103 (104)
203 3sde_A Paraspeckle component 1 99.5 1.4E-14 4.7E-19 120.0 8.5 80 7-86 94-181 (261)
204 3s6e_A RNA-binding protein 39; 99.5 8.7E-14 3E-18 101.9 9.3 78 6-83 4-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 4.9E-13 1.7E-17 98.7 8.8 78 4-82 13-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 3.4E-13 1.2E-17 94.2 7.5 76 6-85 4-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.3 9E-12 3.1E-16 87.5 6.3 76 4-83 10-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 9.1E-10 3.1E-14 88.6 8.8 76 8-83 123-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 5E-09 1.7E-13 75.1 9.3 76 4-80 16-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.6 4.4E-07 1.5E-11 64.4 10.4 77 6-86 5-86 (104)
211 1wey_A Calcipressin 1; structu 98.4 1.2E-06 3.9E-11 62.4 8.6 77 8-85 4-85 (104)
212 1wwh_A Nucleoporin 35, nucleop 98.1 1.5E-05 5E-10 58.1 8.7 73 6-81 21-94 (119)
213 1uw4_A UPF3X; nonsense mediate 98.1 1.3E-05 4.3E-10 55.9 7.5 64 10-73 2-72 (91)
214 1whv_A Poly(A)-specific ribonu 98.0 2E-05 6.7E-10 55.3 7.0 57 7-67 14-70 (100)
215 2l08_A Regulator of nonsense t 97.8 4.6E-05 1.6E-09 53.5 5.7 76 6-81 6-93 (97)
216 3ctr_A Poly(A)-specific ribonu 97.7 2.3E-05 7.7E-10 55.1 3.7 57 7-67 4-60 (101)
217 3p3d_A Nucleoporin 53; structu 97.6 5.5E-05 1.9E-09 55.9 4.3 75 7-83 5-98 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.5 4.8E-05 1.6E-09 67.7 2.9 56 9-65 53-108 (464)
219 2kn4_A Immunoglobulin G-bindin 96.5 0.0013 4.5E-08 49.2 3.0 32 38-69 2-36 (158)
220 2i2y_A Fusion protein consists 96.4 0.00095 3.3E-08 49.8 1.7 39 45-84 12-51 (150)
221 3d45_A Poly(A)-specific ribonu 95.2 0.04 1.4E-06 49.5 7.2 57 8-68 439-495 (507)
222 2g0c_A ATP-dependent RNA helic 94.5 0.09 3.1E-06 34.4 5.7 68 11-82 2-75 (76)
223 4eyt_A Telomerase associated p 91.0 1.6 5.3E-05 30.0 7.9 72 5-79 8-86 (129)
224 2cu1_A Mitogen-activated prote 84.7 2.4 8.3E-05 29.4 5.7 67 16-86 23-90 (103)
225 3fry_A Probable copper-exporti 82.7 3.6 0.00012 25.6 5.8 56 9-66 6-61 (73)
226 3h7h_B Transcription elongatio 79.1 5.2 0.00018 28.0 5.9 35 35-69 40-74 (106)
227 3lpe_A Putative transcription 76.9 11 0.00038 25.4 6.9 34 36-69 40-73 (92)
228 2xmw_A PACS-N, cation-transpor 76.5 9.6 0.00033 22.6 6.3 55 10-65 5-62 (71)
229 4e8u_A Putative uncharacterize 75.6 7 0.00024 29.8 6.1 46 10-55 13-71 (172)
230 3dxs_X Copper-transporting ATP 75.0 12 0.0004 22.9 6.5 56 10-66 4-63 (74)
231 2npt_B Mitogen-activated prote 73.7 12 0.0004 25.7 6.2 63 16-82 35-98 (100)
232 2jrh_A Mitogen-activated prote 73.0 12 0.00042 25.2 6.1 65 16-84 19-84 (94)
233 1yjr_A Copper-transporting ATP 72.3 13 0.00045 22.3 7.8 57 8-65 4-64 (75)
234 1q8l_A Copper-transporting ATP 71.7 16 0.00055 23.0 7.8 57 9-66 10-70 (84)
235 2lfv_A Protein DAMX; cell divi 73.1 0.9 3.1E-05 32.0 0.0 51 19-70 32-88 (106)
236 1yg0_A COP associated protein; 70.0 14 0.00047 21.5 6.4 54 11-65 4-60 (66)
237 2ofg_X Zinc-transporting ATPas 68.9 24 0.00082 23.9 7.4 56 10-66 10-69 (111)
238 4a4j_A Pacszia, cation-transpo 68.8 9.9 0.00034 22.9 4.9 55 10-65 4-61 (69)
239 2c60_A Human mitogen-activated 68.3 10 0.00034 26.4 4.9 63 16-82 46-109 (111)
240 2g9o_A Copper-transporting ATP 66.5 13 0.00043 24.1 5.3 56 10-66 5-64 (90)
241 1kvi_A Copper-transporting ATP 66.5 19 0.00067 21.9 7.3 57 9-66 9-69 (79)
242 2e7g_A Putative ribosome-bindi 65.5 7.3 0.00025 28.1 4.1 34 33-66 43-78 (129)
243 2okq_A Hypothetical protein YB 63.8 13 0.00045 27.3 5.1 40 26-65 50-109 (141)
244 2exu_A Transcription initiatio 63.5 13 0.00044 29.0 5.4 36 36-71 139-174 (200)
245 1q4r_A Protein AT3G17210; cent 62.8 18 0.00061 24.9 5.7 54 10-63 12-81 (112)
246 2kt2_A Mercuric reductase; nme 62.7 21 0.00071 21.0 7.3 54 11-65 3-59 (69)
247 1cpz_A Protein (COPZ); copper 62.4 20 0.0007 20.8 8.8 54 11-65 3-60 (68)
248 1aw0_A Menkes copper-transport 62.1 22 0.00074 21.0 5.6 56 10-66 5-64 (72)
249 4hhu_A OR280; engineered prote 62.0 22 0.00076 25.4 5.9 72 10-81 43-129 (170)
250 2crl_A Copper chaperone for su 61.9 17 0.00059 24.2 5.3 55 10-66 21-76 (98)
251 2l3m_A Copper-ION-binding prot 61.8 22 0.00076 20.9 7.0 56 10-66 7-66 (71)
252 2cfx_A HTH-type transcriptiona 61.6 40 0.0014 23.9 8.4 46 23-68 78-124 (144)
253 3cjk_B Copper-transporting ATP 60.0 25 0.00087 21.0 7.4 55 11-66 5-63 (75)
254 1osd_A MERP, hypothetical prot 59.6 24 0.00084 20.7 8.0 56 10-66 5-64 (72)
255 3bgu_A Ferredoxin-like protein 59.0 35 0.0012 23.7 6.7 52 12-63 25-90 (116)
256 2kyz_A Heavy metal binding pro 57.7 16 0.00055 21.6 4.3 53 11-65 4-56 (67)
257 2lsl_A Telomerase associated p 61.9 2.2 7.6E-05 29.5 0.0 24 45-68 76-99 (137)
258 1y3j_A Copper-transporting ATP 56.4 25 0.00085 21.3 5.1 56 10-66 5-64 (77)
259 2qyc_A Ferredoxin-like protein 55.7 43 0.0015 22.4 7.1 50 12-61 8-71 (103)
260 3bb5_A Stress responsive alpha 55.5 50 0.0017 23.1 8.0 53 11-63 23-91 (121)
261 1fvq_A Copper-transporting ATP 55.1 30 0.001 20.3 5.8 55 11-66 5-62 (72)
262 1p6t_A Potential copper-transp 54.7 46 0.0016 23.2 6.9 54 12-66 78-135 (151)
263 2kpo_A Rossmann 2X2 fold prote 54.5 8.2 0.00028 25.7 2.4 46 21-74 33-79 (110)
264 2ew9_A Copper-transporting ATP 51.9 40 0.0014 23.3 6.2 54 11-65 83-140 (149)
265 1mwy_A ZNTA; open-faced beta-s 51.0 37 0.0013 20.2 8.2 56 10-66 5-62 (73)
266 2qif_A Copper chaperone COPZ; 49.6 34 0.0012 19.5 7.3 55 11-66 5-63 (69)
267 1tr0_A Stable protein 1; plant 49.6 57 0.002 22.0 7.5 62 1-62 1-80 (108)
268 1opz_A Potential copper-transp 48.5 40 0.0014 19.9 7.7 56 10-66 8-67 (76)
269 1vd2_A Protein kinase C, IOTA 46.8 30 0.001 23.3 4.4 52 12-65 17-73 (89)
270 1cqm_A Ribosomal protein S6; a 45.1 56 0.0019 22.1 5.7 64 11-78 6-88 (101)
271 2j5a_A 30S ribosomal protein S 44.4 28 0.00095 24.2 4.1 55 7-63 8-82 (110)
272 2k2p_A Uncharacterized protein 44.3 35 0.0012 21.8 4.5 56 10-66 24-80 (85)
273 3pgw_S U1-70K; protein-RNA com 44.2 2.3 7.9E-05 37.1 -2.0 14 26-39 9-22 (437)
274 2cg4_A Regulatory protein ASNC 43.7 85 0.0029 22.3 7.2 51 17-67 76-128 (152)
275 4bby_A Alkyldihydroxyacetoneph 42.8 9.7 0.00033 34.9 1.9 52 16-67 350-409 (658)
276 2ldi_A Zinc-transporting ATPas 42.3 48 0.0016 19.0 6.1 54 11-65 6-63 (71)
277 3fut_A Dimethyladenosine trans 42.1 24 0.00083 28.5 4.0 33 9-42 110-142 (271)
278 2cpq_A FragIle X mental retard 41.5 78 0.0027 21.2 6.4 43 26-70 37-79 (91)
279 1x60_A Sporulation-specific N- 41.4 35 0.0012 21.6 4.0 63 7-71 7-71 (79)
280 1jww_A Potential copper-transp 40.3 58 0.002 19.4 5.0 54 11-65 6-63 (80)
281 3j21_T 50S ribosomal protein L 40.3 37 0.0012 22.7 4.0 53 13-65 26-82 (86)
282 3uzu_A Ribosomal RNA small sub 39.7 13 0.00045 30.2 2.0 34 10-43 115-148 (279)
283 3ts2_A Protein LIN-28 homolog 39.6 0.83 2.9E-05 34.0 -4.8 28 24-54 2-29 (148)
284 3bde_A MLL5499 protein; stress 39.5 85 0.0029 21.9 6.1 50 12-61 24-86 (120)
285 3swz_A Steroid 17-alpha-hydrox 39.2 36 0.0012 29.0 4.8 58 11-73 16-77 (494)
286 1x8d_A Hypothetical protein YI 38.5 71 0.0024 21.9 5.4 31 24-55 27-60 (104)
287 3rfw_A Cell-binding factor 2; 38.4 32 0.0011 27.0 4.1 42 19-67 89-134 (252)
288 3p8b_B Transcription antitermi 38.0 41 0.0014 24.5 4.4 34 36-69 33-66 (152)
289 3iwl_A Copper transport protei 37.5 65 0.0022 19.2 6.5 53 10-65 4-57 (68)
290 2rop_A Copper-transporting ATP 36.6 1.3E+02 0.0043 22.3 7.3 56 10-66 124-183 (202)
291 2djw_A Probable transcriptiona 35.6 88 0.003 20.1 5.5 42 22-63 14-56 (92)
292 1i4w_A Mitochondrial replicati 35.5 39 0.0013 28.5 4.3 22 11-32 144-165 (353)
293 2w7a_A LINE-1 ORF1P; RNA-bindi 35.5 1.1E+02 0.0036 21.0 8.2 71 9-79 3-98 (100)
294 2llz_A Uncharacterized protein 35.4 1.1E+02 0.0036 21.0 6.2 73 8-81 10-89 (100)
295 3d53_A Inorganic pyrophosphata 35.0 63 0.0021 24.5 5.0 38 22-65 131-168 (173)
296 3ced_A Methionine import ATP-b 34.8 42 0.0014 22.5 3.7 58 11-68 22-87 (98)
297 2kkh_A Putative heavy metal tr 34.6 88 0.003 19.9 8.6 56 10-66 18-77 (95)
298 2f06_A Conserved hypothetical 34.6 1.2E+02 0.004 21.3 7.1 25 46-71 111-135 (144)
299 2kzf_A RBFA, ribosome-binding 34.5 26 0.00088 24.2 2.6 34 34-67 36-71 (106)
300 1qyr_A KSGA, high level kasuga 34.3 29 0.001 27.5 3.3 33 10-42 91-123 (252)
301 3bsu_A Ribonuclease H1, RNAse 34.1 76 0.0026 18.9 4.5 33 21-65 18-50 (53)
302 3lo3_A Uncharacterized conserv 32.9 1.1E+02 0.0037 20.3 6.6 20 46-65 53-72 (94)
303 3ftd_A Dimethyladenosine trans 32.5 31 0.0011 27.3 3.1 33 10-42 96-128 (249)
304 3tqs_A Ribosomal RNA small sub 32.1 18 0.00063 28.8 1.7 33 11-43 98-130 (255)
305 2cyy_A Putative HTH-type trans 32.1 1.3E+02 0.0046 21.2 6.8 51 16-67 74-125 (151)
306 2pn6_A ST1022, 150AA long hypo 31.7 1.3E+02 0.0046 21.0 7.0 48 21-68 76-125 (150)
307 1jos_A RBFA, ribosome-binding 31.1 41 0.0014 24.0 3.3 33 35-67 36-72 (128)
308 1qez_A Ppase, S-ppase, protein 30.8 81 0.0028 23.8 5.0 39 22-66 127-165 (173)
309 2ekm_A Hypothetical protein ST 30.3 1.5E+02 0.0053 21.9 6.3 30 6-35 12-41 (162)
310 2d8m_A DNA-repair protein XRCC 30.2 48 0.0016 23.3 3.5 29 8-37 24-52 (129)
311 4a18_J EIF6, translation initi 30.1 69 0.0024 25.7 4.7 48 17-64 75-133 (248)
312 1wvq_A Hypothetical protein PA 29.8 1.6E+02 0.0056 21.9 6.3 30 6-35 15-44 (167)
313 1fme_A FSD-EY peptide; beta-BE 29.6 34 0.0012 17.3 1.8 13 21-33 13-25 (28)
314 2xmm_A SSR2857 protein, ATX1; 29.5 78 0.0027 17.7 5.1 55 11-66 4-59 (64)
315 1xn9_A 30S ribosomal protein S 29.4 56 0.0019 22.5 3.6 44 19-63 28-81 (101)
316 2lju_A Putative oxidoreductase 29.3 87 0.003 21.8 4.6 20 49-69 62-81 (108)
317 2e1c_A Putative HTH-type trans 29.3 1.4E+02 0.0047 21.9 6.2 50 16-66 94-144 (171)
318 2yko_A LINE-1 ORF1P; RNA-bindi 29.3 2.1E+02 0.0073 22.6 8.9 74 8-81 51-149 (233)
319 3pm9_A Putative oxidoreductase 29.2 27 0.00092 30.6 2.4 50 17-66 194-251 (476)
320 2prd_A Pyrophosphate phosphohy 28.6 60 0.002 24.6 4.0 41 22-66 128-168 (174)
321 1sxv_A Inorganic pyrophosphata 28.4 43 0.0015 25.4 3.1 39 22-66 125-163 (172)
322 3n9y_A Cholesterol SIDE-chain 28.0 1.1E+02 0.0037 25.7 6.1 39 23-65 35-73 (487)
323 2cqy_A Propionyl-COA carboxyla 27.8 76 0.0026 20.6 4.1 43 22-66 33-77 (108)
324 1wvf_A 4-cresol dehydrogenase 27.8 21 0.00072 31.6 1.4 39 25-63 217-261 (520)
325 2lna_A AFG3-like protein 2; st 27.3 1.3E+02 0.0045 20.2 5.2 49 17-65 14-76 (99)
326 3i4p_A Transcriptional regulat 27.1 1.8E+02 0.006 20.9 8.3 50 16-65 70-122 (162)
327 3u5c_Y RP50, 40S ribosomal pro 26.9 82 0.0028 22.9 4.2 42 19-61 33-84 (135)
328 3tbg_A Cytochrome P450 2D6; mo 26.5 79 0.0027 26.4 4.9 49 13-65 20-71 (479)
329 2dbb_A Putative HTH-type trans 26.5 1.7E+02 0.0058 20.5 7.0 46 22-67 81-129 (151)
330 1cc8_A Protein (metallochapero 26.3 1.1E+02 0.0037 18.2 7.3 55 10-66 7-63 (73)
331 1ywx_A 30S ribosomal protein S 26.2 54 0.0018 22.6 3.0 42 19-61 28-79 (102)
332 1i1g_A Transcriptional regulat 25.7 1.5E+02 0.0052 20.4 5.6 46 22-67 76-123 (141)
333 2qrr_A Methionine import ATP-b 25.7 1E+02 0.0035 20.5 4.5 58 11-68 25-89 (101)
334 3chb_D Cholera toxin; toxin/re 25.4 82 0.0028 20.9 3.6 44 25-68 5-71 (104)
335 2ns6_A Mobilization protein A; 25.0 1E+02 0.0035 23.4 4.8 48 9-56 70-127 (185)
336 3bbn_F Ribosomal protein S6; s 24.5 24 0.00081 26.7 1.0 17 47-63 129-145 (168)
337 1g62_A Ribosome anti-associati 24.3 88 0.003 24.7 4.3 49 17-65 72-131 (224)
338 2gu3_A YPMB protein; APC1927, 24.3 47 0.0016 23.9 2.6 28 14-41 68-98 (136)
339 2uuu_A Alkyldihydroxyacetoneph 24.2 28 0.00096 31.4 1.6 51 17-67 281-339 (584)
340 2bkf_A Zinc-finger protein NBR 24.1 1.6E+02 0.0056 19.6 5.3 60 18-81 25-85 (87)
341 2w25_A Probable transcriptiona 23.9 1.9E+02 0.0065 20.2 6.1 44 24-67 82-126 (150)
342 3e6i_A CYPIIE1, P450-J, cytoch 23.8 1.7E+02 0.0058 24.3 6.5 49 13-65 20-71 (476)
343 1ik9_C DNA ligase IV; DNA END 23.7 59 0.002 18.0 2.3 16 18-33 19-34 (37)
344 2rf4_B DNA-directed RNA polyme 23.6 68 0.0023 21.4 3.0 28 6-33 16-43 (87)
345 2jvv_A Transcription antitermi 23.5 17 0.00058 27.4 0.0 23 45-67 65-87 (181)
346 1q9u_A Uncharacterized protein 23.4 1.9E+02 0.0064 20.0 7.0 50 16-65 12-71 (130)
347 1vq8_S 50S ribosomal protein L 23.2 58 0.002 21.6 2.6 51 13-63 25-79 (85)
348 2fiu_A Conserved hypothetical 22.9 68 0.0023 21.5 3.1 19 46-64 54-72 (99)
349 2xzm_P RPS24E; ribosome, trans 22.9 48 0.0016 24.5 2.4 42 19-61 31-82 (149)
350 3ksm_A ABC-type sugar transpor 22.4 1.3E+02 0.0044 22.8 5.1 57 11-67 62-119 (276)
351 3k9v_A 1,25-dihydroxyvitamin D 22.3 1.6E+02 0.0054 24.5 6.0 39 23-65 51-89 (482)
352 3enc_A Protein PCC1; dimerizat 22.2 94 0.0032 20.7 3.5 33 50-82 16-61 (87)
353 1vgg_A Conserved hypothetical 22.1 1.6E+02 0.0054 21.9 5.0 28 5-32 9-36 (161)
354 2h54_A Caspase-1; allosteric s 22.1 2.1E+02 0.0071 21.4 6.0 48 8-66 43-99 (178)
355 3fmb_A Dimeric protein of unkn 21.9 2E+02 0.0068 19.8 7.0 52 12-63 24-92 (118)
356 3ilh_A Two component response 21.8 1.7E+02 0.0057 19.4 5.2 40 1-41 1-40 (146)
357 2e5p_A Protein PHF1, PHD finge 21.6 1E+02 0.0036 19.5 3.4 11 45-55 36-46 (68)
358 2g1d_A 30S ribosomal protein S 21.6 29 0.00099 23.8 0.9 43 19-62 29-81 (98)
359 3pyf_A 4-diphosphocytidyl-2-C- 21.3 2.3E+02 0.0079 22.8 6.6 51 25-77 239-289 (306)
360 1eij_A Hypothetical protein MT 21.3 62 0.0021 21.3 2.4 20 15-34 50-69 (80)
361 1wj6_A KIAA0049 protein, RSGI 21.2 76 0.0026 21.8 2.9 60 18-82 33-94 (101)
362 1q1o_A Cell division control p 20.9 1.1E+02 0.0038 20.9 3.7 59 17-79 29-96 (98)
363 2m0o_A PHD finger protein 1; t 20.6 36 0.0012 22.2 1.1 12 45-56 53-64 (79)
364 3dhx_A Methionine import ATP-b 20.5 61 0.0021 22.0 2.4 52 18-69 30-88 (106)
365 2fp3_A Caspase NC; apoptosis, 20.5 2.5E+02 0.0084 23.0 6.6 49 7-66 60-118 (316)
366 1rxd_A Protein tyrosine phosph 20.4 2.2E+02 0.0075 19.7 6.7 46 8-54 14-68 (159)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=145.50 Aligned_cols=80 Identities=24% Similarity=0.430 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
.+..+.++|||+|||+++||++|+++|++||+|++|+|++| +++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 14 n~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 14 NLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp --CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999987 5689999999999999999999999999999999
Q ss_pred EEeec
Q psy2347 79 EISRG 83 (207)
Q Consensus 79 ~~a~~ 83 (207)
++|+|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99986
No 2
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=1.7e-22 Score=155.55 Aligned_cols=84 Identities=27% Similarity=0.486 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..++.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4457899999999999999999999999999999999887 46899999999999999999999999999999999
Q ss_pred EeecCCCCC
Q psy2347 80 ISRGRGRGR 88 (207)
Q Consensus 80 ~a~~k~~~~ 88 (207)
+|+++.+..
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 998866543
No 3
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=141.50 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCC-----cEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMG-----SKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g-----~~l~V~~ 80 (207)
....++|||.|||+++|+++|+++|++|++|+.|+|+++ +||||+|+++++|++||+.||+++|.+ ++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 456789999999999999999999999999999999987 899999999999999999999999999 9999999
Q ss_pred eecCCCCCCC
Q psy2347 81 SRGRGRGRGG 90 (207)
Q Consensus 81 a~~k~~~~~~ 90 (207)
|+++++...+
T Consensus 90 a~~~~~~~~r 99 (108)
T 1x4c_A 90 DGPRSPSYGR 99 (108)
T ss_dssp SSCCSCCCCC
T ss_pred CCCCCCCCCC
Confidence 9998766544
No 4
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.6e-22 Score=142.55 Aligned_cols=83 Identities=34% Similarity=0.517 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC--CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN--PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d--~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
...+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||+++|++++|+|++++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3456789999999999999999999999999999999877 68999999999999999999999999999999999998
Q ss_pred cCCCC
Q psy2347 83 GRGRG 87 (207)
Q Consensus 83 ~k~~~ 87 (207)
++.+.
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=138.60 Aligned_cols=86 Identities=29% Similarity=0.380 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
...+.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567889999999999999999999999999999999887 57999999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q psy2347 80 ISRGRGRGRGG 90 (207)
Q Consensus 80 ~a~~k~~~~~~ 90 (207)
+++++......
T Consensus 84 ~a~~~~~~~~~ 94 (99)
T 1whw_A 84 PSTIKKEASQS 94 (99)
T ss_dssp ECCCCSTTCCC
T ss_pred EcCCCcccccC
Confidence 99998765443
No 6
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.7e-22 Score=140.93 Aligned_cols=87 Identities=32% Similarity=0.557 Sum_probs=80.0
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
..+.++.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345678899999999999999999999999999999999886 678999999999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q psy2347 78 VEISRGRGRGRG 89 (207)
Q Consensus 78 V~~a~~k~~~~~ 89 (207)
|++++++...+.
T Consensus 86 v~~a~~~~~~~~ 97 (102)
T 1x5s_A 86 VDQAGKSSDNRS 97 (102)
T ss_dssp EEEEECCCCCCC
T ss_pred EEECCCCCCCCC
Confidence 999998776543
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=137.28 Aligned_cols=83 Identities=28% Similarity=0.462 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 457889999999999999999999999999999999987 578999999999999999999999999999999999
Q ss_pred eecCCCCC
Q psy2347 81 SRGRGRGR 88 (207)
Q Consensus 81 a~~k~~~~ 88 (207)
++++....
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98876643
No 8
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.4e-21 Score=138.18 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
...+.++|||+|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3456789999999999999999999999999999999987 6799999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2347 82 RGRGRGRG 89 (207)
Q Consensus 82 ~~k~~~~~ 89 (207)
+++.....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cqi_A 91 TTPSSQKS 98 (103)
T ss_dssp CCTTCCCC
T ss_pred CCCccccc
Confidence 98765543
No 9
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-21 Score=140.55 Aligned_cols=87 Identities=36% Similarity=0.613 Sum_probs=79.9
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
..+.++.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 345678899999999999999999999999999999999887 689999999999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q psy2347 78 VEISRGRGRGRG 89 (207)
Q Consensus 78 V~~a~~k~~~~~ 89 (207)
|++++++.....
T Consensus 86 V~~a~~~~~~~~ 97 (102)
T 2cqb_A 86 VNLAKPMRIKES 97 (102)
T ss_dssp EEECCCCCCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999998766543
No 10
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=138.12 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEE-EEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSV-WVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v-~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..+.++|||.|||+++|+++|+++|++|++|+.| +|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578899999999999999999999999999999 99887 68999999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q psy2347 80 ISRGRGRGRGG 90 (207)
Q Consensus 80 ~a~~k~~~~~~ 90 (207)
+++++.....+
T Consensus 82 ~a~~~~~~~~~ 92 (96)
T 1x5t_A 82 YAFKKDSKGSG 92 (96)
T ss_dssp ESCCCCCCCCC
T ss_pred EecccCCCCCC
Confidence 99988765443
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=137.95 Aligned_cols=86 Identities=28% Similarity=0.429 Sum_probs=79.3
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
....+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999987 589999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy2347 81 SRGRGRGRG 89 (207)
Q Consensus 81 a~~k~~~~~ 89 (207)
++++.....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cq3_A 90 ATARVMTNS 98 (103)
T ss_dssp CCSSCCCCC
T ss_pred cccCCCCCC
Confidence 998876543
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=137.55 Aligned_cols=85 Identities=26% Similarity=0.575 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
....+.++|||+|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+ ||++.|.+++|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999887 68999999999999999998 8999999999999
Q ss_pred EEeecCCCCCC
Q psy2347 79 EISRGRGRGRG 89 (207)
Q Consensus 79 ~~a~~k~~~~~ 89 (207)
++++++.....
T Consensus 84 ~~a~~~~~~~~ 94 (99)
T 2dgs_A 84 KRAEPRDSKSS 94 (99)
T ss_dssp EECCCCCCCCC
T ss_pred EECCCCcccCC
Confidence 99998776543
No 13
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2e-21 Score=138.01 Aligned_cols=83 Identities=28% Similarity=0.502 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeC--CcEEEEEEe
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLM--GSKLRVEIS 81 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~--g~~l~V~~a 81 (207)
...++.++|||.|||+++|+++|+++|++|++|++|+|+++ ++||||+|+++++|++||+.||+++|. +++|+|+++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 45567899999999999999999999999999999999987 899999999999999999999999999 999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
++++++
T Consensus 91 ~~~~~~ 96 (97)
T 1why_A 91 KSGPSS 96 (97)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-21 Score=139.26 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..++.++|||+|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4567889999999999999999999999999999999887 57899999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q psy2347 80 ISRGRGRGRG 89 (207)
Q Consensus 80 ~a~~k~~~~~ 89 (207)
+++++.....
T Consensus 91 ~a~~~~~~~~ 100 (105)
T 1x5u_A 91 KASAHNKNLS 100 (105)
T ss_dssp ETTTTSCCCC
T ss_pred ECCCCCcCCC
Confidence 9998776544
No 15
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.7e-22 Score=142.43 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcC--CceeCCcEEEEEEe
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMN--DQDLMGSKLRVEIS 81 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~--g~~i~g~~l~V~~a 81 (207)
...++.++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.|+ ..+|.+++|+|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 35678899999999999999999999999999999999998 9999999999999999999876 47899999999999
Q ss_pred ecCCCCC
Q psy2347 82 RGRGRGR 88 (207)
Q Consensus 82 ~~k~~~~ 88 (207)
++++...
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8876553
No 16
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.86 E-value=5.5e-21 Score=137.29 Aligned_cols=84 Identities=30% Similarity=0.461 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
..+.+.++|||.|||+++|+++|+++|++|++|+.|+|+ ++||||+|+++++|++||+.||+++|.+++|+|+++++
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 456678999999999999999999999999999999997 45999999999999999999999999999999999998
Q ss_pred CCCCCCC
Q psy2347 84 RGRGRGG 90 (207)
Q Consensus 84 k~~~~~~ 90 (207)
+......
T Consensus 83 ~~~~~~~ 89 (103)
T 2dgu_A 83 PDQKRKE 89 (103)
T ss_dssp CCCCCCC
T ss_pred Ccccchh
Confidence 7765443
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=137.71 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
...+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456789999999999999999999999999999999987 468999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2347 81 SRGRGRG 87 (207)
Q Consensus 81 a~~k~~~ 87 (207)
+++++++
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9987654
No 18
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.5e-21 Score=136.76 Aligned_cols=86 Identities=24% Similarity=0.317 Sum_probs=78.9
Q ss_pred CCCCCCCCcEEEEcCCCcCCcHHHHH----HHHHhCCCeeEEEEeeC--CCcEEEEEEcCHHHHHHHHHhcCCceeCCcE
Q psy2347 2 SDGMMERGTRVYVGGLTETVKKEDLE----LEFEKFGKLNSVWVAFN--PPGFAFVEFSNQIDAEAACDSMNDQDLMGSK 75 (207)
Q Consensus 2 s~~~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d--~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~ 75 (207)
|..+..+.++|||+|||+++|+++|+ ++|++||+|++|+|+.+ .++||||+|+++++|++||+.||+++|.+++
T Consensus 2 ss~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 2 SSGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34556778999999999999999999 99999999999999977 4889999999999999999999999999999
Q ss_pred EEEEEeecCCCC
Q psy2347 76 LRVEISRGRGRG 87 (207)
Q Consensus 76 l~V~~a~~k~~~ 87 (207)
|+|++|++++..
T Consensus 82 l~V~~a~~~~~~ 93 (96)
T 2dgx_A 82 ILVSLATGASGP 93 (96)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999887654
No 19
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=3.9e-21 Score=145.01 Aligned_cols=85 Identities=22% Similarity=0.412 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
...+.++|||+|||+++|+++|+++|++|++|++|+|+++ +++||||+|+++++|++||+.||+.+|.+++|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999877 47899999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q psy2347 80 ISRGRGRGRG 89 (207)
Q Consensus 80 ~a~~k~~~~~ 89 (207)
+++++..+..
T Consensus 118 ~a~~~~~~~~ 127 (139)
T 1u6f_A 118 LAASGHQRPG 127 (139)
T ss_dssp ESSCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998766543
No 20
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.1e-21 Score=138.85 Aligned_cols=84 Identities=26% Similarity=0.416 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
+....+.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.|+. +|.+++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 344567899999999999999999999999999999999987 678999999999999999999997 89999999
Q ss_pred EEEeecCCCC
Q psy2347 78 VEISRGRGRG 87 (207)
Q Consensus 78 V~~a~~k~~~ 87 (207)
|++++++.+.
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999875443
No 21
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.6e-21 Score=134.43 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
.....+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|+++++|++||+.||+++|.+++|+|++++
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS---EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC---EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 445677899999999999999999999999999999999854 99999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy2347 83 GRGRGRG 89 (207)
Q Consensus 83 ~k~~~~~ 89 (207)
++.+...
T Consensus 81 ~~~~~~~ 87 (92)
T 2dgt_A 81 SRLRTAS 87 (92)
T ss_dssp CCCSCCC
T ss_pred CCCCCCC
Confidence 8766543
No 22
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=139.49 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..++.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3566899999999999999999999999999999999987 46899999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q psy2347 80 ISRGRGRGRG 89 (207)
Q Consensus 80 ~a~~k~~~~~ 89 (207)
+++++.....
T Consensus 91 ~a~~~~~~~~ 100 (103)
T 2cq0_A 91 WAKPSTNSGP 100 (103)
T ss_dssp ESSCCCCSCC
T ss_pred ECCCCCCCCC
Confidence 9998776543
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=139.34 Aligned_cols=86 Identities=31% Similarity=0.512 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
...++.++|||+|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999876 5799999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q psy2347 79 EISRGRGRGRG 89 (207)
Q Consensus 79 ~~a~~k~~~~~ 89 (207)
++++++.+...
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2dnm_A 88 QVARYGRRDLS 98 (103)
T ss_dssp EECSSCCSCCC
T ss_pred EECCcCCCCCC
Confidence 99988665433
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=1.6e-21 Score=143.18 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
.+++|||+|||+++||++|+++|++||+|++|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|++++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4568999999999999999999999999999999987 5789999999999999999999999999999999999876
Q ss_pred CCC
Q psy2347 85 GRG 87 (207)
Q Consensus 85 ~~~ 87 (207)
..+
T Consensus 84 ~~~ 86 (115)
T 4f25_A 84 KER 86 (115)
T ss_dssp CC-
T ss_pred ccc
Confidence 554
No 25
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=4e-21 Score=138.18 Aligned_cols=85 Identities=27% Similarity=0.389 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCC---cEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMG---SKLR 77 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g---~~l~ 77 (207)
..++.++|||+|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||+..|.+ ++|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999999987 47899999999999999999999999998 9999
Q ss_pred EEEeecCCCCCC
Q psy2347 78 VEISRGRGRGRG 89 (207)
Q Consensus 78 V~~a~~k~~~~~ 89 (207)
|++++++.++..
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999998876544
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=138.75 Aligned_cols=87 Identities=26% Similarity=0.404 Sum_probs=79.4
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
....+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567899999999999999999999999999999999976 678999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q psy2347 81 SRGRGRGRGG 90 (207)
Q Consensus 81 a~~k~~~~~~ 90 (207)
++++.++..+
T Consensus 90 a~~~~~~~~~ 99 (103)
T 2d9p_A 90 AQRKEERQSG 99 (103)
T ss_dssp CSSCCCCCCC
T ss_pred ecccccCCCC
Confidence 9988765443
No 27
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=2.8e-21 Score=141.36 Aligned_cols=84 Identities=26% Similarity=0.438 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346689999999999999999999999999999999987 458999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy2347 81 SRGRGRGRG 89 (207)
Q Consensus 81 a~~k~~~~~ 89 (207)
++++.....
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 998876543
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=141.35 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||+|||+++||++|+++|++||+|++|+|+.| +++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 357789999999999999999999999999999999987 579999999999999999999999999999999999
Q ss_pred eecCC
Q psy2347 81 SRGRG 85 (207)
Q Consensus 81 a~~k~ 85 (207)
+..+.
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 97543
No 29
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=135.55 Aligned_cols=82 Identities=28% Similarity=0.483 Sum_probs=76.1
Q ss_pred CCCCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcE
Q psy2347 1 MSDGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSK 75 (207)
Q Consensus 1 ms~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~ 75 (207)
|+....++.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.||+++|.+++
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34556678899999999999999999999999999999999887 5789999999999999999999999999999
Q ss_pred EEEEEee
Q psy2347 76 LRVEISR 82 (207)
Q Consensus 76 l~V~~a~ 82 (207)
|+|++|+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 30
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=138.80 Aligned_cols=81 Identities=25% Similarity=0.294 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCce--eCCcEEEEEEe
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD--LMGSKLRVEIS 81 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~--i~g~~l~V~~a 81 (207)
...+++++|||+|||+++|+++|+++|++||+|++|.|+++ |+||||+|+++++|++|++.|+... |.+++|.|+++
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 34578899999999999999999999999999999999876 8999999999999999999998765 78999999999
Q ss_pred ecCC
Q psy2347 82 RGRG 85 (207)
Q Consensus 82 ~~k~ 85 (207)
++++
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8764
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=8.1e-22 Score=139.06 Aligned_cols=79 Identities=24% Similarity=0.377 Sum_probs=72.4
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCC-CeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcC-CceeCCcEEEEEEe
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFG-KLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMN-DQDLMGSKLRVEIS 81 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~-g~~i~g~~l~V~~a 81 (207)
+++|||+|||+++||++|+++|++|| +|++|+|++| +++||||+|+++++|++||+.|+ ...|.+++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 7999999887 78999999999999999999875 56799999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
+|+++.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987654
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=134.40 Aligned_cols=80 Identities=28% Similarity=0.485 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||+|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++|++.||++.|.+++|+|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 467889999999999999999999999999999999987 478999999999999999999999999999999999
Q ss_pred eecCC
Q psy2347 81 SRGRG 85 (207)
Q Consensus 81 a~~k~ 85 (207)
+++++
T Consensus 83 a~~kp 87 (87)
T 3bs9_A 83 ATRKP 87 (87)
T ss_dssp EC---
T ss_pred cCCCC
Confidence 98864
No 33
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.6e-21 Score=140.29 Aligned_cols=87 Identities=26% Similarity=0.443 Sum_probs=79.0
Q ss_pred CCCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCee--------EEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCC
Q psy2347 2 SDGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLN--------SVWVAFN-----PPGFAFVEFSNQIDAEAACDSMND 68 (207)
Q Consensus 2 s~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~--------~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g 68 (207)
+.....+.++|||.|||+++|+++|+++|++|+.|+ .|+|+.+ +++||||+|+++++|++||+.||+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 344566789999999999999999999999999999 6998877 578999999999999999999999
Q ss_pred ceeCCcEEEEEEeecCCCCC
Q psy2347 69 QDLMGSKLRVEISRGRGRGR 88 (207)
Q Consensus 69 ~~i~g~~l~V~~a~~k~~~~ 88 (207)
++|.+++|+|++++++....
T Consensus 88 ~~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp CEETTEECEEECSSCCCCST
T ss_pred CccCCCEEEEEECCCCCCCC
Confidence 99999999999999876653
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.4e-20 Score=137.54 Aligned_cols=86 Identities=28% Similarity=0.456 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
....+.++|||.|||+++|+++|+++|++|+.|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999987 4689999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q psy2347 79 EISRGRGRGRG 89 (207)
Q Consensus 79 ~~a~~k~~~~~ 89 (207)
++++++.....
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99998766543
No 35
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.8e-21 Score=132.88 Aligned_cols=81 Identities=20% Similarity=0.425 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
..++.++|||+|||+++|+++|+++|++|++|++|+|+ ++||||+|+++++|++||+.||+.+|++++|+|++++++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 45678999999999999999999999999999999998 679999999999999999999999999999999999987
Q ss_pred CCCC
Q psy2347 85 GRGR 88 (207)
Q Consensus 85 ~~~~ 88 (207)
.+..
T Consensus 81 ~~~~ 84 (90)
T 2dnq_A 81 SKAS 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6653
No 36
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=3.9e-21 Score=142.69 Aligned_cols=85 Identities=28% Similarity=0.558 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
...+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456789999999999999999999999999999999877 48999999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q psy2347 80 ISRGRGRGRG 89 (207)
Q Consensus 80 ~a~~k~~~~~ 89 (207)
+++++.....
T Consensus 98 ~a~~~~~~~~ 107 (126)
T 3ex7_B 98 WCFVRGPPKG 107 (126)
T ss_dssp ESEESSSCCC
T ss_pred EecCCCCCCC
Confidence 9998776543
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.7e-21 Score=137.31 Aligned_cols=85 Identities=25% Similarity=0.414 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcC------CceeCC
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMN------DQDLMG 73 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~------g~~i~g 73 (207)
..++.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.|| ++.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4467889999999999999999999999999999999977 58999999999999999999999 999999
Q ss_pred cEEEEEEeecCCCCCC
Q psy2347 74 SKLRVEISRGRGRGRG 89 (207)
Q Consensus 74 ~~l~V~~a~~k~~~~~ 89 (207)
++|+|++++++.....
T Consensus 91 ~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAAS 106 (111)
T ss_dssp CEEEEECCCCCCCCCC
T ss_pred EEEEEEECCCCccCCC
Confidence 9999999998766543
No 38
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-21 Score=139.18 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCc-CCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCC--ceeCCcEEEEEEe
Q psy2347 5 MMERGTRVYVGGLTE-TVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMND--QDLMGSKLRVEIS 81 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g--~~i~g~~l~V~~a 81 (207)
..+++++|||+|||+ ++||++|+++|++||+|++|.|+++ ++||||+|+++++|++||+.||. .+|.+++|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 456789999999999 9999999999999999999999987 79999999999999999998885 4699999999999
Q ss_pred ecCCC
Q psy2347 82 RGRGR 86 (207)
Q Consensus 82 ~~k~~ 86 (207)
+++.+
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 87544
No 39
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.7e-21 Score=136.35 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhc--CCceeCCcEEEEEEee
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM--NDQDLMGSKLRVEISR 82 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l--~g~~i~g~~l~V~~a~ 82 (207)
..+++++|||+|||+++||++|+++|++||+|++|.|+++ |+||||+|+++++|++||+.| +..+|.+++|+|++++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 4567899999999999999999999999999999999987 999999999999999999976 4678999999999998
Q ss_pred cCCCCC
Q psy2347 83 GRGRGR 88 (207)
Q Consensus 83 ~k~~~~ 88 (207)
++....
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 876543
No 40
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9.9e-21 Score=132.62 Aligned_cols=83 Identities=24% Similarity=0.451 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
.....+.++|||+|||+++|+++|+++|++||+|++|+|+++ ||||+|+++++|++||+.||++.|.+++|+|++++
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD---YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS---CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC---EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 445678899999999999999999999999999999999854 99999999999999999999999999999999998
Q ss_pred cCCCCC
Q psy2347 83 GRGRGR 88 (207)
Q Consensus 83 ~k~~~~ 88 (207)
++....
T Consensus 80 ~~~~~~ 85 (90)
T 2dnp_A 80 KGQKKS 85 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875543
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=6.7e-21 Score=131.08 Aligned_cols=77 Identities=35% Similarity=0.517 Sum_probs=73.1
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
+++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++|++.||++.|.+++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999999977 478999999999999999999999999999999999998
Q ss_pred CC
Q psy2347 84 RG 85 (207)
Q Consensus 84 k~ 85 (207)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 42
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=9.1e-21 Score=136.48 Aligned_cols=85 Identities=22% Similarity=0.416 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCcee---CCcE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDL---MGSK 75 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i---~g~~ 75 (207)
....+.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++||+.||+..+ .+++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34567899999999999999999999999999999999987 679999999999999999999999988 8999
Q ss_pred EEEEEeecCCCCC
Q psy2347 76 LRVEISRGRGRGR 88 (207)
Q Consensus 76 l~V~~a~~k~~~~ 88 (207)
|+|++++++.+..
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999998876543
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=135.64 Aligned_cols=84 Identities=21% Similarity=0.408 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC------CCcEEEEEEcCHHHHHHHHHhc-CCceeCCcEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN------PPGFAFVEFSNQIDAEAACDSM-NDQDLMGSKLR 77 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d------~rG~afV~F~~~e~A~~Al~~l-~g~~i~g~~l~ 77 (207)
...+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.| |++.|.+++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4467789999999999999999999999999999999876 4899999999999999999999 99999999999
Q ss_pred EEEeecCCCCC
Q psy2347 78 VEISRGRGRGR 88 (207)
Q Consensus 78 V~~a~~k~~~~ 88 (207)
|++++++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99999876654
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=8.4e-21 Score=133.18 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
..++.++|||.|||+++|+++|+++|++|++|+.|+|+++ +++||||+|+++++|++||+.||++.|.+++|+|+++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4567899999999999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
+++...
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 887654
No 45
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=8.2e-21 Score=137.39 Aligned_cols=83 Identities=28% Similarity=0.266 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCC--ceeCCcEEEEEEee
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMND--QDLMGSKLRVEISR 82 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g--~~i~g~~l~V~~a~ 82 (207)
..+++++|||+|||+++||++|+++|++||+|++|.|+++ |+||||+|+++++|++||+.|+. .+|.+++|+|++++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 3467899999999999999999999999999999999886 89999999999999999998865 45999999999998
Q ss_pred cCCCCC
Q psy2347 83 GRGRGR 88 (207)
Q Consensus 83 ~k~~~~ 88 (207)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wex_A 90 SKRITR 95 (104)
T ss_dssp SSSCCC
T ss_pred CccccC
Confidence 876543
No 46
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=132.57 Aligned_cols=82 Identities=29% Similarity=0.430 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhC--CCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKF--GKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
+..+.+.++|||+|||+++|+++|+++|++| +.|+.|+++ ++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456778999999999999999999999999 999999875 67999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2347 81 SRGRGRG 87 (207)
Q Consensus 81 a~~k~~~ 87 (207)
++++.+.
T Consensus 86 a~~~~~~ 92 (99)
T 2cpd_A 86 AKPVDKD 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 47
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=137.22 Aligned_cols=82 Identities=28% Similarity=0.529 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.++.++|||+|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||+..|.+++|+|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356789999999999999999999999999999999987 5799999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 887654
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=133.47 Aligned_cols=84 Identities=24% Similarity=0.383 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC--------CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN--------PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d--------~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
.++.++|||+|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 357789999999999999999999999999999999865 357999999999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q psy2347 78 VEISRGRGRGRG 89 (207)
Q Consensus 78 V~~a~~k~~~~~ 89 (207)
|++++++.....
T Consensus 82 V~~a~~~~~~~~ 93 (98)
T 2cpf_A 82 VRISERATKPAS 93 (98)
T ss_dssp EECSSCSSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999988766543
No 49
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=9.5e-21 Score=134.99 Aligned_cols=83 Identities=27% Similarity=0.487 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
....+.++|||+|||+++|+++|+++|++|++|+.|+|+++ ++||||+|+++++|++||+.||+++|.+++|+|+++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34567789999999999999999999999999999999987 89999999999999999999999999999999999988
Q ss_pred CCCC
Q psy2347 84 RGRG 87 (207)
Q Consensus 84 k~~~ 87 (207)
+...
T Consensus 89 ~~~~ 92 (99)
T 2cpj_A 89 SASL 92 (99)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 50
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=131.13 Aligned_cols=80 Identities=26% Similarity=0.426 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC------CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN------PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d------~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.+.++|||+|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++|++.||+.+|.+++|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 35689999999999999999999999999999999775 578999999999999999999999999999999999
Q ss_pred eecCCC
Q psy2347 81 SRGRGR 86 (207)
Q Consensus 81 a~~k~~ 86 (207)
++++..
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987643
No 51
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5.4e-21 Score=137.59 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=78.3
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
....++.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+. +++.|++++|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 345577899999999999999999999999999999999987 468999999999999999998 99999999999
Q ss_pred EEEeecCCCCCC
Q psy2347 78 VEISRGRGRGRG 89 (207)
Q Consensus 78 V~~a~~k~~~~~ 89 (207)
|++++++.....
T Consensus 89 V~~a~~~~~~~~ 100 (105)
T 2dh8_A 89 PKPCTPRGMQPS 100 (105)
T ss_dssp CCCSCCSSCCTT
T ss_pred EEEccCCCCCCC
Confidence 999998876543
No 52
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8e-21 Score=140.63 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCC--ceeCCcEEEEEEee
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMND--QDLMGSKLRVEISR 82 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g--~~i~g~~l~V~~a~ 82 (207)
..+++++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.|+. .+|.+++|+|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 4567899999999999999999999999999999999987 89999999999999999998874 68999999999998
Q ss_pred cCCCCC
Q psy2347 83 GRGRGR 88 (207)
Q Consensus 83 ~k~~~~ 88 (207)
+++...
T Consensus 106 ~k~~~~ 111 (119)
T 2ad9_A 106 HKELKT 111 (119)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 876554
No 53
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9.7e-21 Score=134.71 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCee-EEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcE-
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLN-SVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSK- 75 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~-~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~- 75 (207)
.....+.++|||+|||+++|+++|+++|++|++|+ +|+|+.+ +++||||+|+++++|++||+.||++.|.++.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 45567889999999999999999999999999999 9999987 4589999999999999999999999999999
Q ss_pred ---EEEEEeecCCC
Q psy2347 76 ---LRVEISRGRGR 86 (207)
Q Consensus 76 ---l~V~~a~~k~~ 86 (207)
|+|++|++...
T Consensus 83 ~~~l~v~~a~~~~~ 96 (99)
T 2div_A 83 AKRFKLNYATYSGP 96 (99)
T ss_dssp CEECCEEETTCCSS
T ss_pred ceeEEEeecCCCCC
Confidence 99999987543
No 54
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=134.92 Aligned_cols=83 Identities=22% Similarity=0.230 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
..++.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4566889999999999999999999999999999999987 478999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2347 81 SRGRGRG 87 (207)
Q Consensus 81 a~~k~~~ 87 (207)
+++....
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9765443
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1e-20 Score=130.76 Aligned_cols=78 Identities=38% Similarity=0.683 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
+.++.++|||.|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++|++.||++.|.+++|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred Eee
Q psy2347 80 ISR 82 (207)
Q Consensus 80 ~a~ 82 (207)
+|+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 56
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=134.34 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
..+..++|||+|||+++|+++|+++|++|+.|+ ++|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+++++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345578999999999999999999999999997 666665 789999999999999999999999999999999999988
Q ss_pred CCC
Q psy2347 84 RGR 86 (207)
Q Consensus 84 k~~ 86 (207)
+.+
T Consensus 94 ~~~ 96 (97)
T 2e5j_A 94 QRD 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 57
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=7.3e-21 Score=139.27 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCC-CeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFG-KLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
.....++|||+|||+++|+++|+++|++|| +|+.|+|+.+ +++||||+|+++++|++||+.||+.+|++++|+|++++
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 345678999999999999999999999999 8999999644 79999999999999999999999999999999999997
Q ss_pred cCCC
Q psy2347 83 GRGR 86 (207)
Q Consensus 83 ~k~~ 86 (207)
.++.
T Consensus 104 ~~p~ 107 (111)
T 2jvr_A 104 NPPP 107 (111)
T ss_dssp C---
T ss_pred CCCC
Confidence 6543
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.7e-20 Score=134.63 Aligned_cols=82 Identities=27% Similarity=0.409 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..++.++|||+|||+++|+++|+++|++|+ |++|+|+.+ +++||||+|+++++|++|| .||+++|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 456778999999999999999999999995 999999987 4689999999999999999 899999999999999
Q ss_pred EeecCCCCC
Q psy2347 80 ISRGRGRGR 88 (207)
Q Consensus 80 ~a~~k~~~~ 88 (207)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 999876544
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=135.07 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHh-CCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCce-eCCcEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEK-FGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQD-LMGSKLR 77 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~-i~g~~l~ 77 (207)
....+.++|||+|||+++|+++|+++|++ |++|+.|+|+.+ +++||||+|+++++|++||+.||++. |.+++|+
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 34567899999999999999999999999 999999999987 67999999999999999999999999 9999999
Q ss_pred EEEeecCCCCCC
Q psy2347 78 VEISRGRGRGRG 89 (207)
Q Consensus 78 V~~a~~k~~~~~ 89 (207)
|++++++.....
T Consensus 84 v~~a~~~~~~~~ 95 (104)
T 2dhg_A 84 LSVAIPKASRVK 95 (104)
T ss_dssp CCBCCCCCSCCC
T ss_pred EEEccCCCcCCC
Confidence 999988766544
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=134.82 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC------CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN------PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d------~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
..++.++|||.|||+++|+++|+++|++|+ |++|+|+.+ +++||||+|+++++|++|| .||+++|.+++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445779999999999999999999999999 999999877 3789999999999999999 89999999999999
Q ss_pred EEeecCCCCC
Q psy2347 79 EISRGRGRGR 88 (207)
Q Consensus 79 ~~a~~k~~~~ 88 (207)
++++++....
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999876653
No 61
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.4e-20 Score=136.52 Aligned_cols=82 Identities=21% Similarity=0.494 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
..+.++|||+|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999877 479999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2347 81 SRGRGRG 87 (207)
Q Consensus 81 a~~k~~~ 87 (207)
+++++.+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9987654
No 62
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=132.94 Aligned_cols=80 Identities=30% Similarity=0.424 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
...++.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999987 4689999999999999999999999999999999
Q ss_pred EEeec
Q psy2347 79 EISRG 83 (207)
Q Consensus 79 ~~a~~ 83 (207)
+++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=135.88 Aligned_cols=80 Identities=29% Similarity=0.573 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.+.++|||+|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45678999999999999999999999999999999987 4699999999999999999999999999999999999
Q ss_pred ecCCC
Q psy2347 82 RGRGR 86 (207)
Q Consensus 82 ~~k~~ 86 (207)
++++.
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 98764
No 64
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=134.79 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCC
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~ 85 (207)
..+.++|||+|||+++|+++|+++|++||+|+.|+|+.+ ++||||+|+++++|++||+.||+++|.+++|+|+++++++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 456789999999999999999999999999999999988 8999999999999999999999999999999999999876
Q ss_pred CCC
Q psy2347 86 RGR 88 (207)
Q Consensus 86 ~~~ 88 (207)
...
T Consensus 101 ~~~ 103 (109)
T 1x4g_A 101 DMT 103 (109)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 65
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-20 Score=137.53 Aligned_cols=83 Identities=29% Similarity=0.456 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
.....+.++|||+|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++|++.||++.|++++|+|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 445667899999999999999999999999999999999887 68999999999999999999999999999999999
Q ss_pred EeecCC
Q psy2347 80 ISRGRG 85 (207)
Q Consensus 80 ~a~~k~ 85 (207)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998864
No 66
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=2e-20 Score=132.57 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
++++|||+|||+++++++|+++|++||.|++|+|+.+ +++||||+|+++++|++||+.||+..|.++.|+|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5689999999999999999999999999999999887 47999999999999999999999999999999999998
Q ss_pred cCCC
Q psy2347 83 GRGR 86 (207)
Q Consensus 83 ~k~~ 86 (207)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8653
No 67
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.6e-21 Score=138.04 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHH---HHHHhCCCeeEEEEeeC--------CCcEEEEEEcCHHHHHHHHHhcCCceeC
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLE---LEFEKFGKLNSVWVAFN--------PPGFAFVEFSNQIDAEAACDSMNDQDLM 72 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~---~~F~~~G~V~~v~i~~d--------~rG~afV~F~~~e~A~~Al~~l~g~~i~ 72 (207)
....+.++|||+|||+++++++|+ ++|++||+|++|+|+++ +++||||+|+++++|++||+.||+++|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 344567899999999999999999 99999999999999877 2379999999999999999999999999
Q ss_pred CcEEEEEEeecCCCC
Q psy2347 73 GSKLRVEISRGRGRG 87 (207)
Q Consensus 73 g~~l~V~~a~~k~~~ 87 (207)
+++|+|++|++++..
T Consensus 90 gr~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 90 GRTLKASLGTTKYCS 104 (111)
T ss_dssp TEEEEEESCCCCSCS
T ss_pred CEEEEEEeccccccc
Confidence 999999999988743
No 68
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=135.21 Aligned_cols=79 Identities=46% Similarity=0.792 Sum_probs=74.7
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCCCCC
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRGRGR 88 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~~~~ 88 (207)
++|||+|||+++|+++|+++|++|++|++|+|+.++++||||+|+++++|++||+.||+++|.+++|+|++++++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 5899999999999999999999999999999998888999999999999999999999999999999999999877543
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=130.46 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
....+.++|||+|||+++|+++|+++|++| .|+.|+|+.+ +++||||+|+++++|++||+ ||++.|.++.|+|+
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 345678899999999999999999999999 9999999987 57899999999999999999 99999999999999
Q ss_pred EeecCCCC
Q psy2347 80 ISRGRGRG 87 (207)
Q Consensus 80 ~a~~k~~~ 87 (207)
++++++..
T Consensus 83 ~a~~~~~s 90 (91)
T 2dgw_A 83 REKSGPSS 90 (91)
T ss_dssp EESSCCCC
T ss_pred ECCcCCCC
Confidence 99887653
No 70
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=9.2e-21 Score=133.75 Aligned_cols=80 Identities=28% Similarity=0.352 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
...++.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34567789999999999999999999999999999999987 47899999999999999999999999999999999
Q ss_pred Eeec
Q psy2347 80 ISRG 83 (207)
Q Consensus 80 ~a~~ 83 (207)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 71
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=5.5e-21 Score=136.14 Aligned_cols=83 Identities=14% Similarity=0.318 Sum_probs=74.3
Q ss_pred CCCCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCC--eeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCc----
Q psy2347 1 MSDGMMERGTRVYVGGLTETVKKEDLELEFEKFGK--LNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQ---- 69 (207)
Q Consensus 1 ms~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~--V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~---- 69 (207)
|-......-.+|||+|||+++|+++|+++|++||. |++|+|++| +++||||+|+++++|++||+.||+.
T Consensus 1 mg~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 1 MGHHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp CCCCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred CCcccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 44556667789999999999999999999999995 678999887 7899999999999999999999986
Q ss_pred eeCCcEEEEEEeec
Q psy2347 70 DLMGSKLRVEISRG 83 (207)
Q Consensus 70 ~i~g~~l~V~~a~~ 83 (207)
.|++++|.|++|++
T Consensus 81 ~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 81 KIDGKTIGVDFAKS 94 (95)
T ss_dssp EETTEEEEEEECCC
T ss_pred eECCEEEEEEEccC
Confidence 58999999999975
No 72
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.3e-20 Score=130.47 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
..+..|||+||++.+||++|+++|.+||+|++++|+.+ |+||||+|.++++|++|++.||+.+|.+++|+|++|++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 45779999999999999999999999999999999884 99999999999999999999999999999999999853
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.6e-20 Score=140.83 Aligned_cols=82 Identities=30% Similarity=0.440 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..++.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||+.+|.+++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567889999999999999999999999999999999976 68999999999999999999999999999999999
Q ss_pred EeecCCC
Q psy2347 80 ISRGRGR 86 (207)
Q Consensus 80 ~a~~k~~ 86 (207)
+++++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988653
No 74
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=3.9e-20 Score=133.39 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
..++.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999987 578999999999999999999999999999999999
Q ss_pred ee
Q psy2347 81 SR 82 (207)
Q Consensus 81 a~ 82 (207)
++
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 75
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=127.73 Aligned_cols=77 Identities=31% Similarity=0.500 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhc-CCceeCCcEEEEEEee
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM-NDQDLMGSKLRVEISR 82 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l-~g~~i~g~~l~V~~a~ 82 (207)
...+.++|||+|||+++|+++|+++|++||+|+.|+|+++ ++||||+|+++++|++|++.| +++.|.+++|+|++|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4466789999999999999999999999999999999986 899999999999999999999 9999999999999985
No 76
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=130.21 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCC-eeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCC-ceeCCcEEEEEEee
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGK-LNSVWVAFNPPGFAFVEFSNQIDAEAACDSMND-QDLMGSKLRVEISR 82 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g-~~i~g~~l~V~~a~ 82 (207)
..++.++|||+|||+++|+++|+++|++|++ |+.+.|+ +++||||+|+++++|++||+.||+ ++|.+++|+|++++
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 3567789999999999999999999999999 6666554 379999999999999999999999 99999999999999
Q ss_pred cCCCCC
Q psy2347 83 GRGRGR 88 (207)
Q Consensus 83 ~k~~~~ 88 (207)
++..+.
T Consensus 82 ~~~~~~ 87 (93)
T 2cqh_A 82 SKKLRS 87 (93)
T ss_dssp CCCCCC
T ss_pred CccccC
Confidence 876543
No 77
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.82 E-value=1.9e-20 Score=137.49 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcE-----EEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSK-----LRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~-----l~V~~a 81 (207)
...++|||.|||+++|+++|+++|++|++|++|+|+.+ +||||+|+++++|++||++||+++|++++ |+|+.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 45689999999999999999999999999999999876 89999999999999999999999999988 777777
Q ss_pred ecCCCCCC
Q psy2347 82 RGRGRGRG 89 (207)
Q Consensus 82 ~~k~~~~~ 89 (207)
+++.....
T Consensus 92 ~~~~~~~~ 99 (115)
T 3beg_B 92 GPRSPSYG 99 (115)
T ss_dssp C----CCC
T ss_pred CCCCCCCC
Confidence 76655443
No 78
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=3e-20 Score=131.82 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCc-CCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 5 MMERGTRVYVGGLTE-TVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
..++.++|||+|||+ ++|+++|+++|++||+|++|+|. ++||||+|+++++|++||+.||+..|.+++|+|+++++
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 456889999999998 99999999999999999999995 78999999999999999999999999999999999988
Q ss_pred CCCCCC
Q psy2347 84 RGRGRG 89 (207)
Q Consensus 84 k~~~~~ 89 (207)
+.+...
T Consensus 83 ~~~~~~ 88 (96)
T 2kvi_A 83 NARPQF 88 (96)
T ss_dssp CCC---
T ss_pred CCCCCC
Confidence 765443
No 79
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.4e-20 Score=134.42 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
.....++|||+|||+++|+++|+++|++||+|++|+|++. ++||||+|++.++|++||+.||++.|++++|+|++++++
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE-KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 3455789999999999999999999999999999999865 899999999999999999999999999999999999874
No 80
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=131.59 Aligned_cols=81 Identities=28% Similarity=0.427 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
....+.++|||.|||+++|+++|+++|++|++| +|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 345678999999999999999999999999987 34443 68999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy2347 80 ISRGRGRG 87 (207)
Q Consensus 80 ~a~~k~~~ 87 (207)
+++++.+.
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99887554
No 81
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=4.9e-20 Score=133.79 Aligned_cols=78 Identities=33% Similarity=0.546 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCcC-CcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCC
Q psy2347 7 ERGTRVYVGGLTET-VKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85 (207)
Q Consensus 7 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~ 85 (207)
...++|||+|||++ +|+++|+++|++|++|++|+| +++||||+|+++++|++||+.||+++|++++|+|++++++.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 34589999999999 999999999999999999998 47899999999999999999999999999999999998654
Q ss_pred CC
Q psy2347 86 RG 87 (207)
Q Consensus 86 ~~ 87 (207)
..
T Consensus 102 ~~ 103 (110)
T 1wf1_A 102 PD 103 (110)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 82
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-20 Score=136.58 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCcC-CcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcC--CceeCCcEEEEEEe
Q psy2347 5 MMERGTRVYVGGLTET-VKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMN--DQDLMGSKLRVEIS 81 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~--g~~i~g~~l~V~~a 81 (207)
..+++++|||+|||++ +||++|+++|++||+|++|.|+++ ++||||+|+++++|++||+.|+ ..+|.+++|+|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 4567899999999998 999999999999999999999875 8999999999999999999885 45699999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
+++.+.
T Consensus 100 ~~~~~~ 105 (112)
T 1x4f_A 100 EKYKKL 105 (112)
T ss_dssp CSCSSS
T ss_pred cccccc
Confidence 876654
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=134.21 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..++.++|||+|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999876 46899999999999999999999999999999999
Q ss_pred EeecCC
Q psy2347 80 ISRGRG 85 (207)
Q Consensus 80 ~a~~k~ 85 (207)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 84
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-20 Score=133.98 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
...+.++|||+|||+++||++|+++|++|+. ++|+|+++ +++||||+|+++++|++||+ +|+++|.++.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456789999999999999999999999994 59999887 57899999999999999995 799999999999999
Q ss_pred eecCCC
Q psy2347 81 SRGRGR 86 (207)
Q Consensus 81 a~~k~~ 86 (207)
+++++.
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 887654
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=133.16 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..+..++|||.|||+++|+++|+++|++|+.|+.+.++.+ +++||||+|+++++|++||+.||++.|.+++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4456789999999999999999999999999987776655 57999999999999999999999999999999999
Q ss_pred EeecCC
Q psy2347 80 ISRGRG 85 (207)
Q Consensus 80 ~a~~k~ 85 (207)
+++.+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 997654
No 86
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.8e-20 Score=133.82 Aligned_cols=79 Identities=25% Similarity=0.442 Sum_probs=74.0
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+. +++.|.+++|+|+++++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 489999999999999999999999999999999987 579999999999999999997 99999999999999998
Q ss_pred CCCCC
Q psy2347 84 RGRGR 88 (207)
Q Consensus 84 k~~~~ 88 (207)
+....
T Consensus 106 ~~~~~ 110 (116)
T 1x4b_A 106 REESG 110 (116)
T ss_dssp CCCCC
T ss_pred CccCC
Confidence 87654
No 87
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=7.5e-21 Score=133.41 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=66.9
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCC--CeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFG--KLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
.+|||+|||+++|+++|+++|++|| +|++|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|++++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 9999999987 57899999999999999999999999999999999998
Q ss_pred cCCCC
Q psy2347 83 GRGRG 87 (207)
Q Consensus 83 ~k~~~ 87 (207)
+++..
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87654
No 88
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=8.6e-20 Score=132.67 Aligned_cols=82 Identities=23% Similarity=0.435 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..++.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++||+.++ +.|+++.|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEE
Confidence 3456789999999999999999999999999999999987 57999999999999999999875 99999999999
Q ss_pred EeecCCCC
Q psy2347 80 ISRGRGRG 87 (207)
Q Consensus 80 ~a~~k~~~ 87 (207)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 89
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=5.3e-20 Score=140.68 Aligned_cols=81 Identities=44% Similarity=0.751 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
...+.++|||+|||+++|+++|+++|++||+|++|+|+.++++||||+|+++++|++||+.||++.|.+++|+|++++++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999886
Q ss_pred C
Q psy2347 85 G 85 (207)
Q Consensus 85 ~ 85 (207)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 5
No 90
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=7.6e-20 Score=127.37 Aligned_cols=77 Identities=26% Similarity=0.515 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
+.++|||+|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++|+ .||++.|.+++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4579999999999999999999999999999999987 5899999999999999999 899999999999999998
Q ss_pred cCC
Q psy2347 83 GRG 85 (207)
Q Consensus 83 ~k~ 85 (207)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 91
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.4e-20 Score=131.50 Aligned_cols=81 Identities=27% Similarity=0.530 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
...++.++|||.|||+++|+++|+++|++|. .|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999999999999999999999873 5666665 4689999999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy2347 79 EISRGRGRG 87 (207)
Q Consensus 79 ~~a~~k~~~ 87 (207)
++++++.+.
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999987764
No 92
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=129.29 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..++.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+. .+.|++++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 4467789999999999999999999999999999999987 468999999999999999984 679999999999
Q ss_pred EeecCCCCC
Q psy2347 80 ISRGRGRGR 88 (207)
Q Consensus 80 ~a~~k~~~~ 88 (207)
++++++...
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqg_A 89 LPNSKQSQD 97 (103)
T ss_dssp CCCTTCCCC
T ss_pred ecCCCCcCC
Confidence 999876653
No 93
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=1.1e-20 Score=135.34 Aligned_cols=79 Identities=24% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCc------CCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCC-c
Q psy2347 7 ERGTRVYVGGLTE------TVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMG-S 74 (207)
Q Consensus 7 ~~~~~lfV~nLp~------~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g-~ 74 (207)
...++|||+|||. ++++++|+++|++||+|++|+|+.+ +++||||+|+++++|++||+.||++.|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999999877 67999999999999999999999999999 9
Q ss_pred EEEEEEeecCC
Q psy2347 75 KLRVEISRGRG 85 (207)
Q Consensus 75 ~l~V~~a~~k~ 85 (207)
+|+|++++++.
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999998764
No 94
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.6e-19 Score=138.88 Aligned_cols=84 Identities=35% Similarity=0.522 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
..+.++|||+|||+++|+++|+++|++||+|+.|+|+.| +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999887 689999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy2347 81 SRGRGRGRG 89 (207)
Q Consensus 81 a~~k~~~~~ 89 (207)
++++.+...
T Consensus 147 a~~~~~~~~ 155 (158)
T 2kn4_A 147 ARYGRPPDS 155 (158)
T ss_dssp ECCSSCCCC
T ss_pred CCCCCCCCC
Confidence 998765443
No 95
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=8.8e-20 Score=129.93 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeE--------EEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCce
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNS--------VWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQD 70 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~ 70 (207)
....+.++|||+|||+++|+++|+++|++|+.|+. |+|+.+ +++||||+|+++++|++||+.||+..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999 999887 46899999999999999999999999
Q ss_pred eCCcEEEEEEee
Q psy2347 71 LMGSKLRVEISR 82 (207)
Q Consensus 71 i~g~~l~V~~a~ 82 (207)
|.+++|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999984
No 96
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=5.9e-20 Score=134.79 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||.|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999999877 589999999999999999999999999999999998
Q ss_pred ee
Q psy2347 81 SR 82 (207)
Q Consensus 81 a~ 82 (207)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 97
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=8.4e-20 Score=132.66 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
...+.++|||+|||+++|+++|+++|++||+|+.|+|+ ++||||+|+++++|++|++.||+..|.+++|+|++++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34567899999999999999999999999999999998 789999999999999999999999999999999999887
Q ss_pred CCC
Q psy2347 85 GRG 87 (207)
Q Consensus 85 ~~~ 87 (207)
.++
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 98
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=132.71 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCe----eEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKL----NSVWVAFN-PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V----~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||+|||+++|+++|+++|++|+.| ..++++.. +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999998 56666644 789999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy2347 81 SRGRGRGRG 89 (207)
Q Consensus 81 a~~k~~~~~ 89 (207)
++++.....
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998776543
No 99
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7e-20 Score=132.17 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
...+.++|||+|||+++|+++|+++|++||+|++|.|+.+ +++||||+|+++++|++||+ +++++|.++.|.|++
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999987 78999999999999999999 899999999999998
Q ss_pred eec
Q psy2347 81 SRG 83 (207)
Q Consensus 81 a~~ 83 (207)
+++
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 100
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-19 Score=126.29 Aligned_cols=81 Identities=23% Similarity=0.350 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
...+.++|||+|| ++|+++|+++|++||+|+.|+|.. +++||||+|+++++|++||+.||++.|.+++|+|++++++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3456789999996 899999999999999999999975 4899999999999999999999999999999999999887
Q ss_pred CCCC
Q psy2347 85 GRGR 88 (207)
Q Consensus 85 ~~~~ 88 (207)
+...
T Consensus 88 ~~~~ 91 (97)
T 1x5p_A 88 PMLD 91 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 101
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=2.8e-19 Score=132.42 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
..++.++|||+|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2347 81 SRGRGRG 87 (207)
Q Consensus 81 a~~k~~~ 87 (207)
|.++...
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 102
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=132.92 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=76.3
Q ss_pred CCCCCcEEEE--cCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCcee-----CCcEEE
Q psy2347 5 MMERGTRVYV--GGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDL-----MGSKLR 77 (207)
Q Consensus 5 ~~~~~~~lfV--~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i-----~g~~l~ 77 (207)
..+++++||| +||++++||++|+++|++||+|++|.|+.+ ++||||+|+++++|++|++.||+++| .+++|.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4567889999 779999999999999999999999988876 89999999999999999999999998 689999
Q ss_pred EEEeecCCCCCCC
Q psy2347 78 VEISRGRGRGRGG 90 (207)
Q Consensus 78 V~~a~~k~~~~~~ 90 (207)
|.+++..+...++
T Consensus 100 v~~a~~~p~~~~~ 112 (114)
T 2cq2_A 100 LNFVEKVQWSGPS 112 (114)
T ss_dssp EEEESCCCCSSCC
T ss_pred EEecccCcccCCC
Confidence 9999877665543
No 103
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.3e-19 Score=132.31 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC--CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN--PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d--~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
+.++.++|||+|||+++|+++|+++|++||.|+.|.|+.+ +++||||+|+++++|++||+.||+..|.++.|.|++++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4567889999999999999999999999999999999987 68999999999999999999999999999999999998
Q ss_pred cCCC
Q psy2347 83 GRGR 86 (207)
Q Consensus 83 ~k~~ 86 (207)
++..
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 7543
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=130.83 Aligned_cols=82 Identities=24% Similarity=0.356 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCC-eeEEEEe-eC-----CCcEEEEEEcCHHHHHHHHHhcC--CceeCCcEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGK-LNSVWVA-FN-----PPGFAFVEFSNQIDAEAACDSMN--DQDLMGSKL 76 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~-~d-----~rG~afV~F~~~e~A~~Al~~l~--g~~i~g~~l 76 (207)
..+.++|||+|||+++|+++|+++|++|+. |++|.|+ .+ +++||||+|+++++|++||+.|+ ...|.+++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 43 68999999999999999999996 589999999
Q ss_pred EEEEeecCCCC
Q psy2347 77 RVEISRGRGRG 87 (207)
Q Consensus 77 ~V~~a~~k~~~ 87 (207)
+|++++++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999987654
No 105
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=2.4e-19 Score=127.71 Aligned_cols=78 Identities=26% Similarity=0.443 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCc-CCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 5 MMERGTRVYVGGLTE-TVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
..++.++|||+|||+ ++++++|+++|++||+|++|+|. ++||||+|+++++|++||+.||+..|.+++|+|+++++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 456789999999998 99999999999999999999984 78999999999999999999999999999999999987
Q ss_pred CC
Q psy2347 84 RG 85 (207)
Q Consensus 84 k~ 85 (207)
+.
T Consensus 95 ~~ 96 (97)
T 2xnq_A 95 NA 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 106
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=1.9e-20 Score=153.37 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCC--CeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFG--KLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
+.++|||+|||+++||++|+++|++|+ +|++|+|++| +|+||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999999988 579999999999999999999999999999999999
Q ss_pred eecC
Q psy2347 81 SRGR 84 (207)
Q Consensus 81 a~~k 84 (207)
|+++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9764
No 107
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.80 E-value=8.5e-20 Score=128.15 Aligned_cols=82 Identities=24% Similarity=0.446 Sum_probs=64.4
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
.+..+.++|||+|||+++||++|+++|++||+|++|+|++++++||||+|+++++|+++.. ....+.+++|.|++|++
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCG--EDLIIKGISVHISNAEP 83 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEEECC-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEEEcCC
Confidence 4566789999999999999999999999999999999999899999999999999984321 13345699999999988
Q ss_pred CCCC
Q psy2347 84 RGRG 87 (207)
Q Consensus 84 k~~~ 87 (207)
+..+
T Consensus 84 k~~~ 87 (89)
T 3d2w_A 84 KHNK 87 (89)
T ss_dssp ----
T ss_pred CCcC
Confidence 7653
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=4.7e-20 Score=139.18 Aligned_cols=83 Identities=35% Similarity=0.522 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
++.++|||+|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45679999999999999999999999999999999876 6789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2347 82 RGRGRGRG 89 (207)
Q Consensus 82 ~~k~~~~~ 89 (207)
+++.+...
T Consensus 125 ~~~~~~~~ 132 (135)
T 2lea_A 125 RYGRPPDS 132 (135)
T ss_dssp CCCCCCTT
T ss_pred CCCCCCcc
Confidence 88765443
No 109
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=132.51 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCcee--------
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDL-------- 71 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i-------- 71 (207)
....+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34456789999999999999999999999999999999987 578999999999999999999999999
Q ss_pred CCcEEEEEEeecC
Q psy2347 72 MGSKLRVEISRGR 84 (207)
Q Consensus 72 ~g~~l~V~~a~~k 84 (207)
.+++|.|++++|+
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999865
No 110
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=134.95 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHH----HHHHhCCCeeEEEEeeC--CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLE----LEFEKFGKLNSVWVAFN--PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d--~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
..++.++|||+|||+.+++++|+ ++|++||+|++|.|+.+ +++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34567899999999999999876 69999999999988765 7899999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy2347 79 EISRGRGR 86 (207)
Q Consensus 79 ~~a~~k~~ 86 (207)
++|+++..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987643
No 111
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=4.2e-19 Score=157.90 Aligned_cols=81 Identities=22% Similarity=0.530 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.+.++|||+|||++||+++|+++|++||+|+.|.|+.+ +++||||+|+++++|++||++||+++|.+++|+|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999877 6899999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
+++...
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 986553
No 112
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-20 Score=133.68 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCC
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~ 85 (207)
...++|||.|||+++|+++|+++|++||.|+.|.|+.+ ++||||+|+++++|++||+.||++.|.+++|.|++++...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 35679999999999999999999999999999998875 8999999999999999999999999999999999997643
No 113
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=4.2e-20 Score=136.24 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCC---eeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGK---LNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
...+.++|||+|||+++|+++|+++|++|+. |+.|+|+.+ +++||||+|+++++|++||+ ||+++|.++.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 3456789999999999999999999999999 899999987 57899999999999999999 899999999999
Q ss_pred EEEeecCC
Q psy2347 78 VEISRGRG 85 (207)
Q Consensus 78 V~~a~~k~ 85 (207)
|.++++++
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997653
No 114
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=140.32 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCC--CeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFG--KLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
+.++|||+|||+++||++|+++|++|| +|++|+|+.| +++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 567999999999999999999999999 9999999987 578999999999999999999999999999999999
Q ss_pred eecC
Q psy2347 81 SRGR 84 (207)
Q Consensus 81 a~~k 84 (207)
|+++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 115
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=1.7e-19 Score=133.36 Aligned_cols=79 Identities=28% Similarity=0.519 Sum_probs=73.1
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++|| .||++.|.+++|+|+++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999876 5899999999999999999 7999999999999999987
Q ss_pred CCCCC
Q psy2347 84 RGRGR 88 (207)
Q Consensus 84 k~~~~ 88 (207)
.....
T Consensus 115 ~~~~~ 119 (124)
T 2jwn_A 115 NMPGI 119 (124)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 65543
No 116
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=2.4e-20 Score=131.54 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||.|||+++|+++|+++|++|+.|+.+.++.+ +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345689999999999999999999999999988877764 579999999999999999999999999999999998
Q ss_pred eec
Q psy2347 81 SRG 83 (207)
Q Consensus 81 a~~ 83 (207)
+++
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 117
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=1.6e-19 Score=140.32 Aligned_cols=84 Identities=21% Similarity=0.487 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
..+.++|||.|||+++|+++|+++|++||+|+.|.|+.+ +++||||+|.++++|++||+.||++.|.+++|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999987 479999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy2347 81 SRGRGRGRG 89 (207)
Q Consensus 81 a~~k~~~~~ 89 (207)
++++.....
T Consensus 149 a~~~~~~~~ 157 (165)
T 1rk8_A 149 CFVKGPKRV 157 (165)
T ss_dssp SEECC----
T ss_pred ecCCCCCCC
Confidence 998776543
No 118
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=1.1e-19 Score=128.69 Aligned_cols=82 Identities=24% Similarity=0.424 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHH----HHHHhCCCeeEEEEeeC--CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLE----LEFEKFGKLNSVWVAFN--PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d--~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
..++.++|||+|||+++|+++|+ ++|++||+|+.|.|+.+ +++||||+|+++++|++|++.||+..|.+++|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34678999999999999999999 99999999999998854 6899999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy2347 79 EISRGRGR 86 (207)
Q Consensus 79 ~~a~~k~~ 86 (207)
++++++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99988654
No 119
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=2.4e-19 Score=124.47 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=70.2
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
....+.++|||+|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++||+. ++++|++++|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEE
Confidence 34567889999999999999999999999999999999987 478999999999999999975 888999999999
Q ss_pred EEe
Q psy2347 79 EIS 81 (207)
Q Consensus 79 ~~a 81 (207)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 876
No 120
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=129.84 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeE-EEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNS-VWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~-v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
...+.++|||+|||+++|+++|+++|++|+.|++ |+|+.+ +++||||+|+++++|++||+. |++.|.++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 888776 689999999999999999997 9999999999999
Q ss_pred EeecCCC
Q psy2347 80 ISRGRGR 86 (207)
Q Consensus 80 ~a~~k~~ 86 (207)
++++++-
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9987653
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-21 Score=141.25 Aligned_cols=85 Identities=22% Similarity=0.330 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeE--------EEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCce
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNS--------VWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQD 70 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~ 70 (207)
+...+.++|||+|||+++|+++|+++|++|+.|+. |+|+.+ +++||||+|+++++|++||+.||+..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34567889999999999999999999999999998 888876 57999999999999999999999999
Q ss_pred eCCcEEEEEEeecCCCCC
Q psy2347 71 LMGSKLRVEISRGRGRGR 88 (207)
Q Consensus 71 i~g~~l~V~~a~~k~~~~ 88 (207)
|.+++|+|+++++++...
T Consensus 82 ~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADFN 99 (116)
Confidence 999999999999887653
No 122
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-20 Score=134.19 Aligned_cols=78 Identities=26% Similarity=0.399 Sum_probs=72.7
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
.++|||.|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++|| .||++.|.++.|+|+++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999976 6799999999999999999 8999999999999999987
Q ss_pred CCCC
Q psy2347 84 RGRG 87 (207)
Q Consensus 84 k~~~ 87 (207)
+..+
T Consensus 104 ~~~~ 107 (114)
T 2cq4_A 104 EKNR 107 (114)
T ss_dssp HHHH
T ss_pred CccC
Confidence 6543
No 123
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=133.03 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCe-eEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKL-NSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V-~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
...+.++|||+|||+++|+++|+++|++|+.| +.|+|+.| +++||||+|+++++|++||+. |++.|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 45667899999999999999999999999999 88999887 689999999999999999987 9999999999999
Q ss_pred EeecCC
Q psy2347 80 ISRGRG 85 (207)
Q Consensus 80 ~a~~k~ 85 (207)
++++++
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998765
No 124
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=6.4e-20 Score=138.85 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCC---eeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKFGK---LNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKL 76 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l 76 (207)
....+.++|||+|||+++||++|+++|++|+. |+.|+|++| +++||||+|+++++|++||+ ||+++|.++.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34566789999999999999999999999999 889999987 57899999999999999999 99999999999
Q ss_pred EEEEeecCC
Q psy2347 77 RVEISRGRG 85 (207)
Q Consensus 77 ~V~~a~~k~ 85 (207)
+|.++++++
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999987653
No 125
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=126.73 Aligned_cols=81 Identities=21% Similarity=0.401 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCC
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~ 85 (207)
..+.++|||+|||+++|+++|+++|++||+|++|+|+.++++||||+|+++++|++|+.. ...+.+++|+|++++++.
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 356799999999999999999999999999999999988899999999999999875432 456699999999998876
Q ss_pred CCC
Q psy2347 86 RGR 88 (207)
Q Consensus 86 ~~~ 88 (207)
...
T Consensus 80 ~~~ 82 (88)
T 1wf0_A 80 NSN 82 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 126
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=129.75 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.+.++|||+|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999999999876 4799999999999999999999999999999999999
Q ss_pred ecCCC
Q psy2347 82 RGRGR 86 (207)
Q Consensus 82 ~~k~~ 86 (207)
+++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87654
No 127
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-20 Score=128.47 Aligned_cols=77 Identities=18% Similarity=0.331 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||+|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.++.|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 467889999999999999999999999999999999987 589999999999999999999999999999887765
Q ss_pred ee
Q psy2347 81 SR 82 (207)
Q Consensus 81 a~ 82 (207)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 128
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=125.82 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEE-EEeeC-CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSV-WVAFN-PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v-~i~~d-~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
....++|||+|||+++|+++|+++|++||+|+.| .|+.+ ..+.|||+|+++++|++||+.||++.|.+++|+|+++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3457899999999999999999999999999999 47777 445699999999999999999999999999999999998
Q ss_pred CC
Q psy2347 84 RG 85 (207)
Q Consensus 84 k~ 85 (207)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 129
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=5.3e-19 Score=137.38 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcCCceeCC--cEEEEEEeec
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMNDQDLMG--SKLRVEISRG 83 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~g~~i~g--~~l~V~~a~~ 83 (207)
.+..+|||.||++++|+++|+++|++||+|++|.|+.+ +++||||+|+++++|++|++.||+.+|.+ ++|+|+++++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 34467899999999999999999999999999999866 57899999999999999999999999966 9999999998
Q ss_pred CCC
Q psy2347 84 RGR 86 (207)
Q Consensus 84 k~~ 86 (207)
+.-
T Consensus 124 ~~l 126 (164)
T 1sjr_A 124 TSL 126 (164)
T ss_dssp SSC
T ss_pred Ccc
Confidence 753
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=131.63 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=70.0
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
.++|||+|||+++||++|+++|++| .|+.|+|+.| +++||||+|+++++|++|| .||++.|.++.|+|..++++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4799999999999999999999999 9999999987 7899999999999999999 58999999999999998765
Q ss_pred C
Q psy2347 85 G 85 (207)
Q Consensus 85 ~ 85 (207)
+
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 131
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=132.94 Aligned_cols=77 Identities=38% Similarity=0.655 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
..++.++|||+|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3457889999999999999999999999999999999877 68999999999999999999999999999999998
Q ss_pred Ee
Q psy2347 80 IS 81 (207)
Q Consensus 80 ~a 81 (207)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 132
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=128.26 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCcCC------cHHHHHHHHHhCCCeeEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCc-EE
Q psy2347 7 ERGTRVYVGGLTETV------KKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGS-KL 76 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~------te~~L~~~F~~~G~V~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~-~l 76 (207)
...++|||+|||+.+ |+++|+++|++||+|+.|.|+.+ +++||||+|+++++|++||+.||++.|.++ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 88999999999999999998843 689999999999999999999999999998 99
Q ss_pred EEEEeecCCC
Q psy2347 77 RVEISRGRGR 86 (207)
Q Consensus 77 ~V~~a~~k~~ 86 (207)
+|+++++..+
T Consensus 93 ~V~~a~~~~k 102 (105)
T 2nlw_A 93 RVNLFTDFDK 102 (105)
T ss_dssp EEECSCCCCC
T ss_pred EEEEcchHhh
Confidence 9999986543
No 133
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-20 Score=131.30 Aligned_cols=79 Identities=18% Similarity=0.397 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.+.++|||+|||+++|+++|+++|++|+.|+. .++.+ +++||||+|+++++|++||+ ||++.|.+++|+|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 46789999999999999999999999998877 34433 78999999999999999999 9999999999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
+++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 887654
No 134
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=7.2e-20 Score=137.16 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeE--EEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCc----eeCCc
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNS--VWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQ----DLMGS 74 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~----~i~g~ 74 (207)
..+.++|||+|||+++||++|+++|++||.|+. |+|++| +++||||+|+++ +|++||+.||++ +|+++
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 999988 689999999999 999999999999 99999
Q ss_pred EEEEEEeecCCCC
Q psy2347 75 KLRVEISRGRGRG 87 (207)
Q Consensus 75 ~l~V~~a~~k~~~ 87 (207)
+|+|++++++.+.
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886544
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-19 Score=126.54 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
..+.++|||+|||+++|+++|+++|++|++|+.+ .... +++||||+|+++++|++||+.||++.|.+++|+|++++++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4567899999999999999999999999988777 2222 6899999999999999999999999999999999999887
Q ss_pred CCC
Q psy2347 85 GRG 87 (207)
Q Consensus 85 ~~~ 87 (207)
.+.
T Consensus 92 ~~~ 94 (96)
T 1fjc_A 92 GGT 94 (96)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 136
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=129.90 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=70.3
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC------CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN------PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d------~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
.....++|||+|||+++|+++|+++|++|| |++|+|+.+ +++||||+|+++++|++|| .||+..|.++.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 446679999999999999999999999999 999999876 4799999999999999999 89999999999999
Q ss_pred EEeecCC
Q psy2347 79 EISRGRG 85 (207)
Q Consensus 79 ~~a~~k~ 85 (207)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998864
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=1.9e-19 Score=121.63 Aligned_cols=70 Identities=27% Similarity=0.605 Sum_probs=66.2
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
+|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++|++ ||++.|++++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999999877 57999999999999999998 8999999999999875
No 138
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.8e-19 Score=123.41 Aligned_cols=82 Identities=26% Similarity=0.286 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
.....++|||+|||+++|+++|+++|++||+|++|.+..+ .+ ||||+|+++++|++||+ ||+++|.+++|+|+++.+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 3456789999999999999999999999999998822222 23 99999999999999999 999999999999999887
Q ss_pred CCCCC
Q psy2347 84 RGRGR 88 (207)
Q Consensus 84 k~~~~ 88 (207)
+....
T Consensus 82 ~~~~~ 86 (94)
T 2e5g_A 82 KEFQS 86 (94)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 65543
No 139
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=7.5e-19 Score=131.78 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcE-EEEEEcCHHHHHHHHHhcCCceeCC--cEEEEEEeecC
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGF-AFVEFSNQIDAEAACDSMNDQDLMG--SKLRVEISRGR 84 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~-afV~F~~~e~A~~Al~~l~g~~i~g--~~l~V~~a~~k 84 (207)
+..+|||.||++.+|+++|+++|++||+|++|.|+.++++| |||+|++.++|++|++.||+++|.+ ++|+|++++++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 44577799999999999999999999999999998777788 9999999999999999999999988 89999999876
Q ss_pred CC
Q psy2347 85 GR 86 (207)
Q Consensus 85 ~~ 86 (207)
.-
T Consensus 107 ~l 108 (130)
T 3zzy_A 107 SL 108 (130)
T ss_dssp SC
T ss_pred ce
Confidence 43
No 140
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-19 Score=122.25 Aligned_cols=71 Identities=23% Similarity=0.480 Sum_probs=67.6
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++|++.++ +.|++++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999999999887 57999999999999999999999 9999999999987
No 141
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=7.9e-20 Score=138.83 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
...+.++|||+|||+++||++|+++|++|+ |++|+|++| +++||||+|+++++|++|| +||+++|.++.|+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 779999887 6899999999999999999 7899999999999999
Q ss_pred eecCCC
Q psy2347 81 SRGRGR 86 (207)
Q Consensus 81 a~~k~~ 86 (207)
+++++.
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 987654
No 142
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=3.9e-19 Score=124.06 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCC
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~ 85 (207)
...++|||+|||+++|+++|+++|++| +|++|+|.+ +++||||+|+++++|++|++.||+.+|.+++|+|++++.+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~-~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR-NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG-GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC-CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 467899999999999999999999999 999999864 58999999999999999999999999999999999997643
No 143
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=9.2e-20 Score=127.44 Aligned_cols=77 Identities=29% Similarity=0.557 Sum_probs=68.5
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
++|||+|||+++++++|+++|++||+|++|+|+.+ +++||||+|++++ |++|++.||++.|.+++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999877 5899999999999 99999999999999999999999886
Q ss_pred CCC
Q psy2347 85 GRG 87 (207)
Q Consensus 85 ~~~ 87 (207)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 144
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=137.54 Aligned_cols=80 Identities=25% Similarity=0.380 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.++.++|||.|||+++|+++|+++|++|++|++|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|++|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456789999999999999999999999999999999886 6899999999999999999999999999999999999
Q ss_pred ecCC
Q psy2347 82 RGRG 85 (207)
Q Consensus 82 ~~k~ 85 (207)
.+..
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7654
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.9e-20 Score=135.32 Aligned_cols=80 Identities=25% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
...+.++|||+|||+++|+++|+++|++|+.|+.+.++.+ +++||||+|+++++|++||+ ||++.|.++.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456689999999999999999999999999987444432 57999999999999999999 99999999999999
Q ss_pred EeecCC
Q psy2347 80 ISRGRG 85 (207)
Q Consensus 80 ~a~~k~ 85 (207)
+++++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998653
No 146
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=130.59 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=74.9
Q ss_pred CCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCC---eeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcE
Q psy2347 3 DGMMERGTRVYVGGLTETVKKEDLELEFEKFGK---LNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSK 75 (207)
Q Consensus 3 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~ 75 (207)
.....+.++|||+|||+++|+++|+++|++|+. |+.|+|+.+ +++||||+|+++++|++||+ ||++.|.++.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 345567889999999999999999999999998 899999887 68999999999999999999 8999999999
Q ss_pred EEEEEeecCC
Q psy2347 76 LRVEISRGRG 85 (207)
Q Consensus 76 l~V~~a~~k~ 85 (207)
|+|.++++++
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999998754
No 147
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=5.6e-19 Score=121.32 Aligned_cols=70 Identities=21% Similarity=0.361 Sum_probs=65.2
Q ss_pred CcEEEEcCCCcCC------cHHHHHHHHHhCCCeeEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCc-EEEE
Q psy2347 9 GTRVYVGGLTETV------KKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGS-KLRV 78 (207)
Q Consensus 9 ~~~lfV~nLp~~~------te~~L~~~F~~~G~V~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~-~l~V 78 (207)
+++|||+|||+++ |+++|+++|++||+|++|+|+.+ +++||||+|+++++|++||+.||+..|.++ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 78999999999999999998854 789999999999999999999999999999 8876
No 148
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=2.8e-18 Score=127.84 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=69.1
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcE-EEEEEcCHHHHHHHHHhcCCceeCC--cEEEEEEeecCCC
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGF-AFVEFSNQIDAEAACDSMNDQDLMG--SKLRVEISRGRGR 86 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~-afV~F~~~e~A~~Al~~l~g~~i~g--~~l~V~~a~~k~~ 86 (207)
..|||.||++.+|+++|+++|++||+|++|.|+.. .+| |||+|+++++|++|+++||+.+|.+ ++|+|++|+++.-
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 34679999999999999999999999999999875 586 9999999999999999999999987 6899999988753
No 149
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=2e-18 Score=138.92 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCC-cCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCC
Q psy2347 7 ERGTRVYVGGLT-ETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85 (207)
Q Consensus 7 ~~~~~lfV~nLp-~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~ 85 (207)
.++++|||+||| +++|+++|+++|++||+|++|+|++++++||||+|+++++|++||+.||+++|.+++|+|.+++.+.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 367899999999 8999999999999999999999999889999999999999999999999999999999999997543
No 150
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=1.9e-18 Score=119.72 Aligned_cols=73 Identities=22% Similarity=0.379 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhC----C-------CeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCc
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKF----G-------KLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGS 74 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~ 74 (207)
..+.++|||+|||+++|+++|+++|++| + +|++|+++++ ++||||+|+++++|++|+ .||++.|.++
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 4567899999999999999999999999 8 8999999887 899999999999999999 9999999999
Q ss_pred EEEEEE
Q psy2347 75 KLRVEI 80 (207)
Q Consensus 75 ~l~V~~ 80 (207)
+|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999873
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.8e-19 Score=131.01 Aligned_cols=78 Identities=22% Similarity=0.187 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCe----eEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKL----NSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V----~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
++.++|||+|||+++|+++|+++|++|++| +.|+|+++ +++||||+|+++++|++||+. |++.|.++.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 567899999999999999999999999875 68888876 679999999999999999986 999999999999
Q ss_pred EEeecCC
Q psy2347 79 EISRGRG 85 (207)
Q Consensus 79 ~~a~~k~ 85 (207)
..+++++
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987643
No 152
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=8.4e-19 Score=131.03 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCee--EEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLN--SVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~--~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
...+.++|||+|||+++||++|+++|++| .|+ .|+|++| +++||||+|+++++|++||+. ++++|.++.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567899999999999999999999999 777 8999887 789999999999999999985 779999999999
Q ss_pred EEeecCC
Q psy2347 79 EISRGRG 85 (207)
Q Consensus 79 ~~a~~k~ 85 (207)
.++++++
T Consensus 116 ~~a~~~e 122 (126)
T 2hgm_A 116 FKSSQEE 122 (126)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 153
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=130.17 Aligned_cols=82 Identities=26% Similarity=0.384 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeE--------EEEeeC--CCcEEEEEEcCHHHHHHHHHhcCCceeCCc
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNS--------VWVAFN--PPGFAFVEFSNQIDAEAACDSMNDQDLMGS 74 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d--~rG~afV~F~~~e~A~~Al~~l~g~~i~g~ 74 (207)
...+.++|||+|||+++|+++|+++|++||.|+. |.+... +++||||+|.++++|++||+.||+..|.++
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3467889999999999999999999999999876 433333 789999999999999999999999999999
Q ss_pred EEEEEEeecCCC
Q psy2347 75 KLRVEISRGRGR 86 (207)
Q Consensus 75 ~l~V~~a~~k~~ 86 (207)
+|.|++|+++..
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999977543
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=2.9e-18 Score=138.07 Aligned_cols=79 Identities=27% Similarity=0.382 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
..++|||.|||+++|+++|+++|++||+|+.|+|+.| +++||||+|+++++|++||+.||+++|.+++|+|++|+++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4578999999999999999999999999999999987 6899999999999999999999999999999999999876
Q ss_pred CC
Q psy2347 85 GR 86 (207)
Q Consensus 85 ~~ 86 (207)
.+
T Consensus 182 ~~ 183 (213)
T 4f02_A 182 KE 183 (213)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=4.3e-18 Score=137.07 Aligned_cols=81 Identities=30% Similarity=0.379 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
+..+.++|||+|||+++||++|+++|++||+|++|+|++| +++||||+|+++++|++||+.||...+.++.|+|.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 4457789999999999999999999999999999999987 56899999999999999999999999999999999
Q ss_pred EeecCC
Q psy2347 80 ISRGRG 85 (207)
Q Consensus 80 ~a~~k~ 85 (207)
++.+..
T Consensus 91 ~~~~~~ 96 (213)
T 4f02_A 91 WSQRDP 96 (213)
T ss_dssp ECCCCT
T ss_pred cccccc
Confidence 886543
No 156
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=9.5e-19 Score=118.07 Aligned_cols=70 Identities=21% Similarity=0.492 Sum_probs=65.8
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
+|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++|++. +++.|.+++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999999999999999999999999999876 589999999999999999985 889999999999875
No 157
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=5.5e-18 Score=125.56 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCC
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~ 85 (207)
..+.++|||+|| ++|+++|+++|++||+|++|+|+. +++||||+|+++++|++||+.||+.+|.+++|+|++++++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 456789999996 699999999999999999999975 48999999999999999999999999999999999998875
Q ss_pred CC
Q psy2347 86 RG 87 (207)
Q Consensus 86 ~~ 87 (207)
..
T Consensus 113 ~~ 114 (121)
T 2bz2_A 113 ML 114 (121)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 158
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=1.8e-18 Score=123.61 Aligned_cols=80 Identities=20% Similarity=0.438 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
..+.++|||+|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++||+ +++.|++++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345689999999999999999999999999999999987 57999999999999999998 899999999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 877554
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=1e-17 Score=128.54 Aligned_cols=79 Identities=24% Similarity=0.456 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
+.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|.++++|++|++.|++..|.+++|+|++++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5789999999999999999999999999999999876 56899999999999999999999999999999999998
Q ss_pred cCCC
Q psy2347 83 GRGR 86 (207)
Q Consensus 83 ~k~~ 86 (207)
++..
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 160
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=1.6e-17 Score=138.36 Aligned_cols=85 Identities=25% Similarity=0.409 Sum_probs=79.3
Q ss_pred CCCCCCCCCcEEEEcCCCcCCcHHHHH----HHHHhCCCeeEEEEeeC--CCcEEEEEEcCHHHHHHHHHhcCCceeCCc
Q psy2347 1 MSDGMMERGTRVYVGGLTETVKKEDLE----LEFEKFGKLNSVWVAFN--PPGFAFVEFSNQIDAEAACDSMNDQDLMGS 74 (207)
Q Consensus 1 ms~~~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d--~rG~afV~F~~~e~A~~Al~~l~g~~i~g~ 74 (207)
|+....++.++|||+|||+++|+++|+ ++|++||+|++|+|+++ +++||||+|+++++|++||+.||+..|.++
T Consensus 1 m~~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 777788899999999999999999977 89999999999999876 789999999999999999999999999999
Q ss_pred EEEEEEeecCC
Q psy2347 75 KLRVEISRGRG 85 (207)
Q Consensus 75 ~l~V~~a~~k~ 85 (207)
.|+|++++++.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997755
No 161
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=1.4e-17 Score=127.42 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
+.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|.++++|++|++.||+..|.+++|+|++++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 3689999999999999999999999999999999987 34899999999999999999999999999999999998
Q ss_pred cCCC
Q psy2347 83 GRGR 86 (207)
Q Consensus 83 ~k~~ 86 (207)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7653
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=1.1e-17 Score=131.95 Aligned_cols=81 Identities=20% Similarity=0.400 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++|++.||+..|.+++|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999987 3789999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
+++.+.
T Consensus 192 ~~~~~~ 197 (198)
T 2yh0_A 192 SVGAKN 197 (198)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 163
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=117.60 Aligned_cols=77 Identities=23% Similarity=0.276 Sum_probs=68.2
Q ss_pred CCCCCcE-EEEcCCCcCCcHHH----HHHHHHhC-CCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 5 MMERGTR-VYVGGLTETVKKED----LELEFEKF-GKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 5 ~~~~~~~-lfV~nLp~~~te~~----L~~~F~~~-G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
..+++.+ |||.|||+.+++++ |+++|++| |+|.+| ..++|||+|++.++|++|++.||+.+|.+++|+|
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TGCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 3455666 99999999999988 55899999 599988 2499999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy2347 79 EISRGRGR 86 (207)
Q Consensus 79 ~~a~~k~~ 86 (207)
++|+++..
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99988754
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.7e-17 Score=126.75 Aligned_cols=79 Identities=34% Similarity=0.515 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
...+.++|||.|||+++|+++|+++|++|+.|+.|+|+.+ ++++|||+|+++++|++|++.||+..|.+++|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 3456789999999999999999999999999999999877 46899999999999999999999999999999999
Q ss_pred Eeec
Q psy2347 80 ISRG 83 (207)
Q Consensus 80 ~a~~ 83 (207)
+|++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9864
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=1.7e-17 Score=132.52 Aligned_cols=82 Identities=29% Similarity=0.438 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|+++++|++||+.||+++|.+++|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999987 3789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2347 82 RGRGRGR 88 (207)
Q Consensus 82 ~~k~~~~ 88 (207)
++++...
T Consensus 203 ~~~~~~~ 209 (216)
T 2qfj_A 203 VTPPMPL 209 (216)
T ss_dssp SSCSSTT
T ss_pred cCCCCCC
Confidence 9876543
No 166
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=1.2e-17 Score=137.30 Aligned_cols=80 Identities=24% Similarity=0.446 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCcCC---------cHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCcee-----
Q psy2347 6 MERGTRVYVGGLTETV---------KKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDL----- 71 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i----- 71 (207)
..+.++|||+||+.++ +|++|+++|++||+|++|+|+.+ ++||||+|+++++|++|+++|+++.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-KNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-CCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4567899999999998 79999999999999999999986 99999999999999999999999999
Q ss_pred -------CCcEEEEEEeecCCC
Q psy2347 72 -------MGSKLRVEISRGRGR 86 (207)
Q Consensus 72 -------~g~~l~V~~a~~k~~ 86 (207)
.++.|.|++|++++.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTGGGGGGSCCCEEEECC----
T ss_pred ccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=2.5e-17 Score=129.62 Aligned_cols=83 Identities=20% Similarity=0.382 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.+.++|||.|||+++|+++|+++|++||.|+.|+|+.+ +++||||+|+++++|++||+. +++.|.++.|+|+++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 34589999999999999999999999999999999987 478999999999999999986 799999999999999
Q ss_pred ecCCCCCCC
Q psy2347 82 RGRGRGRGG 90 (207)
Q Consensus 82 ~~k~~~~~~ 90 (207)
.++......
T Consensus 181 ~~k~~~~~~ 189 (196)
T 1l3k_A 181 LSKQEMASA 189 (196)
T ss_dssp C--------
T ss_pred CChhHhccc
Confidence 998776543
No 168
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.71 E-value=2.8e-17 Score=133.64 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCc-CCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 5 MMERGTRVYVGGLTE-TVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
..+++++|||+|||+ ++|+++|+++|++||+|++|+|+.+.++||||+|.++++|++||+.||+..|.+++|+|+++++
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345688999999999 9999999999999999999999999889999999999999999999999999999999999986
Q ss_pred CC
Q psy2347 84 RG 85 (207)
Q Consensus 84 k~ 85 (207)
+.
T Consensus 110 ~~ 111 (229)
T 2adc_A 110 QN 111 (229)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.1e-17 Score=125.33 Aligned_cols=77 Identities=19% Similarity=0.393 Sum_probs=72.4
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCC
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~ 85 (207)
++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|.++++|++|++.|++..|.++.|.|+++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999877 56899999999999999999999999999999999997765
Q ss_pred C
Q psy2347 86 R 86 (207)
Q Consensus 86 ~ 86 (207)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=1.8e-17 Score=127.16 Aligned_cols=77 Identities=19% Similarity=0.475 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
+.++|||.|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++|++ |++..|.+++|+|++|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 4679999999999999999999999999999999876 57899999999999999998 89999999999999999
Q ss_pred cCC
Q psy2347 83 GRG 85 (207)
Q Consensus 83 ~k~ 85 (207)
||+
T Consensus 165 pk~ 167 (167)
T 2cjk_A 165 PRH 167 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=9.5e-17 Score=133.74 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeC-CcEEEEEEee
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLM-GSKLRVEISR 82 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~-g~~l~V~~a~ 82 (207)
..+.++|||.|||+++|+++|+++|++|+.|++|+|+.+.++||||+|+++++|++||+.||+.+|. +++|+|++++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3467899999999999999999999999999999999887799999999999999999999999999 9999999986
No 172
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=115.60 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCcCC-----------cHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcCCceeC
Q psy2347 5 MMERGTRVYVGGLTETV-----------KKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMNDQDLM 72 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~-----------te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~g~~i~ 72 (207)
...++++|+|.||.... ++++|+++|++||+|++|.|+.. +++||||+|+++++|++||+.||++.|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45678999999994433 26899999999999999966422 7899999999999999999999999999
Q ss_pred CcEEEEEEeecCCCC
Q psy2347 73 GSKLRVEISRGRGRG 87 (207)
Q Consensus 73 g~~l~V~~a~~k~~~ 87 (207)
+++|+|++++++..-
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999887654
No 173
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=4.2e-17 Score=128.27 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|.++++|++||+. +++.|.++.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 456789999999999999999999999999999999987 468999999999999999986 88999999999999
Q ss_pred eecCCC
Q psy2347 81 SRGRGR 86 (207)
Q Consensus 81 a~~k~~ 86 (207)
+.++..
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 877644
No 174
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=5.4e-17 Score=125.11 Aligned_cols=76 Identities=21% Similarity=0.412 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
...++|||.|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++|++.||++.|.+++|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44689999999999999999999999999999999988 3789999999999999999999999999999999987
Q ss_pred e
Q psy2347 82 R 82 (207)
Q Consensus 82 ~ 82 (207)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=119.11 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=62.1
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC--------CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN--------PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKL 76 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d--------~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l 76 (207)
.....++|||+|||+++|+++|+++|++||+|+ +.++.+ +++||||+|+++++|++||++| +.++++.|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEE
Confidence 345678999999999999999999999999999 777764 3799999999999999999988 24566655
Q ss_pred EEEEe
Q psy2347 77 RVEIS 81 (207)
Q Consensus 77 ~V~~a 81 (207)
.|..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 55443
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=7e-17 Score=127.76 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCC-CeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeC-CcEEEEEEeec
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFG-KLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLM-GSKLRVEISRG 83 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~-g~~l~V~~a~~ 83 (207)
.++.++|||.|||+++|+++|+++|++|| +|+.|+|+.+.+++|||+|+++++|++|++.||+..|. +++|+|+++++
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 35688999999999999999999999999 99999998777899999999999999999999999999 99999999987
Q ss_pred C
Q psy2347 84 R 84 (207)
Q Consensus 84 k 84 (207)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 5
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=1.3e-16 Score=129.80 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCC-CeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeC-CcEEEEEEeec
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFG-KLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLM-GSKLRVEISRG 83 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~-g~~l~V~~a~~ 83 (207)
.++.++|||.|||+++|+++|+++|++|| +|+.|+|+.+.+++|||+|+++++|++||+.||+..|. +++|+|+++++
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 34578999999999999999999999999 99999997766899999999999999999999999999 99999999987
Q ss_pred C
Q psy2347 84 R 84 (207)
Q Consensus 84 k 84 (207)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 5
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=7.2e-17 Score=125.03 Aligned_cols=77 Identities=18% Similarity=0.362 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC--CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN--PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d--~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
.+.++|||.|||+++|+++|+++|++|++|..+ ..+ +++||||+|+++++|++||+.||++.|.+++|+|++|++|
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 456899999999999999999999999988877 222 7899999999999999999999999999999999999887
Q ss_pred C
Q psy2347 85 G 85 (207)
Q Consensus 85 ~ 85 (207)
+
T Consensus 175 ~ 175 (175)
T 1fje_B 175 G 175 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 179
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=9.1e-17 Score=128.19 Aligned_cols=78 Identities=29% Similarity=0.492 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
+.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|+++++|++||+.||++.|.+++|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4579999999999999999999999999999999876 68999999999999999999999999999999998876
Q ss_pred cCC
Q psy2347 83 GRG 85 (207)
Q Consensus 83 ~k~ 85 (207)
++.
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=6.7e-17 Score=127.88 Aligned_cols=78 Identities=23% Similarity=0.396 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCc-CCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCC
Q psy2347 8 RGTRVYVGGLTE-TVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRG 85 (207)
Q Consensus 8 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~ 85 (207)
.+++|||+|||+ ++|+++|+++|++||+|++|+|+.+.++||||+|+++++|++||+.||+..|.+++|+|.+++++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 357999999999 999999999999999999999999888999999999999999999999999999999999998654
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=1.7e-16 Score=114.74 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCc-----CCcHHHHHHHHHhCCCeeEEEEeeC------CCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2347 5 MMERGTRVYVGGLTE-----TVKKEDLELEFEKFGKLNSVWVAFN------PPGFAFVEFSNQIDAEAACDSMNDQDLMG 73 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~V~~v~i~~d------~rG~afV~F~~~e~A~~Al~~l~g~~i~g 73 (207)
...++++|+|.||.. +.++++|+++|++||+|++|.|+++ +++|+||+|+++++|++|++.||+..|.+
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456889999999952 2378999999999999999999875 47999999999999999999999999999
Q ss_pred cEEEEEEeec
Q psy2347 74 SKLRVEISRG 83 (207)
Q Consensus 74 ~~l~V~~a~~ 83 (207)
++|+|+++.+
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999975
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=1.2e-16 Score=123.20 Aligned_cols=76 Identities=21% Similarity=0.462 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeC---CcEEEEE
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLM---GSKLRVE 79 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~---g~~l~V~ 79 (207)
.+.++|||.|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++|++.||+..+. +++|+|+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 35689999999999999999999999999999999987 5789999999999999999999998876 4999999
Q ss_pred Eee
Q psy2347 80 ISR 82 (207)
Q Consensus 80 ~a~ 82 (207)
+|.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 183
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=1.9e-16 Score=121.42 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCC--cEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMG--SKLRV 78 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g--~~l~V 78 (207)
..+.++|||.|||.++|+++|+++|++|++|+.|+|+.+ ++++|||+|+++++|++|++.||+..|.+ ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 456789999999999999999999999999999999987 36899999999999999999999999987 99999
Q ss_pred EEe
Q psy2347 79 EIS 81 (207)
Q Consensus 79 ~~a 81 (207)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=3.1e-16 Score=120.86 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-------CCcEEEEEEcCHHHHHHHHHhcCCceeC---CcEEE
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-------PPGFAFVEFSNQIDAEAACDSMNDQDLM---GSKLR 77 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-------~rG~afV~F~~~e~A~~Al~~l~g~~i~---g~~l~ 77 (207)
+.++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|.++++|++|++.|++..+. .+.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999999876 3579999999999999999999998875 67788
Q ss_pred EEEeecCCC
Q psy2347 78 VEISRGRGR 86 (207)
Q Consensus 78 V~~a~~k~~ 86 (207)
|.+++++..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 887766543
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=3.1e-16 Score=129.97 Aligned_cols=78 Identities=24% Similarity=0.490 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeec
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRG 83 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~ 83 (207)
...+.++|||+|||+++|+++|+++|++||+|+.|.|+++ ++||||+|.++++|++||+.||++.|.++.|+|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 3455689999999999999999999999999999999876 89999999999999999999999999999999999875
No 186
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=3.7e-16 Score=119.36 Aligned_cols=75 Identities=28% Similarity=0.589 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcE--EEEE
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSK--LRVE 79 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~--l~V~ 79 (207)
.+.++|||.|||+++|+++|+++|++|++|+.|+|+.+ ++++|||+|+++++|++|++.||+..|.++. |+|+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45689999999999999999999999999999999887 3789999999999999999999999999965 7777
Q ss_pred Ee
Q psy2347 80 IS 81 (207)
Q Consensus 80 ~a 81 (207)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 187
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=5.7e-16 Score=119.31 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhC----C-------CeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcE
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKF----G-------KLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSK 75 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~ 75 (207)
.+.++|||+|||+++|+++|+++|++| + .|.++++..+ ++||||+|.++++|++|+ +||++.|.+++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-TTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-CCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 467899999999999999999999999 6 7888888776 999999999999999999 89999999999
Q ss_pred EEEEEeecCC
Q psy2347 76 LRVEISRGRG 85 (207)
Q Consensus 76 l~V~~a~~k~ 85 (207)
|+|+++++..
T Consensus 80 i~v~~~~~~~ 89 (172)
T 2g4b_A 80 LKIRRPHDYQ 89 (172)
T ss_dssp CEEECCSSCC
T ss_pred eeecCCcccC
Confidence 9999876654
No 188
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=4.8e-16 Score=123.93 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=68.8
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
.++|||.|||+++|+++|+++|++||+|+.|+|+++ +++||||+|+++++|++||+.+ +++|.+++|.|.+++.-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 479999999999999999999999999999999986 6799999999999999999865 46999999999987653
No 189
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-15 Score=107.17 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCC-------cCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 6 MERGTRVYVGGLT-------ETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 6 ~~~~~~lfV~nLp-------~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
.....+|.|.-.+ .++|+++|+++|++||+|++|.|+..+++||||+|+++++|++||+.++ .+.+++|+|
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V 84 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKI 84 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEE
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEE
Confidence 3445677776543 4589999999999999999999987789999999999999999999854 467999999
Q ss_pred EEeecCCCCCC
Q psy2347 79 EISRGRGRGRG 89 (207)
Q Consensus 79 ~~a~~k~~~~~ 89 (207)
+++++++....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T 2d9o_A 85 SWLEGQPQDAS 95 (100)
T ss_dssp ECSSCCCCCCS
T ss_pred EEccCCCCCCC
Confidence 99988765443
No 190
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=3e-16 Score=120.35 Aligned_cols=75 Identities=19% Similarity=0.421 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
++++|||+|||+++|+++|+++|++||+|++|+|+.+ +++||||+|.++++|++||+. .+.|.++.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999999887 679999999999999999985 578999999999886
Q ss_pred cC
Q psy2347 83 GR 84 (207)
Q Consensus 83 ~k 84 (207)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=4.2e-16 Score=125.27 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCe--eEEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCceeCCc----EEE
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKL--NSVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQDLMGS----KLR 77 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V--~~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~~i~g~----~l~ 77 (207)
+++++|||.|||+++||++|+++|++||.| ++|+|+.+ ++++|||+|+++++|++||+.||+++|.++ ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 467799999999999999999999999999 89999876 468999999999999999999999999876 577
Q ss_pred EEEe
Q psy2347 78 VEIS 81 (207)
Q Consensus 78 V~~a 81 (207)
|++|
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7775
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=1e-15 Score=120.54 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhC----C-------CeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcE
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKF----G-------KLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSK 75 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~ 75 (207)
...++|||+|||+++|+++|+++|++| + .|.++++..+ ++||||+|.++++|++|| .||++.|.+++
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~-~g~afV~F~~~~~A~~Al-~l~g~~~~g~~ 79 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT-TTEEEEEESCSHHHHHHG-GGTTEEETTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC-CCEEEEEeCCHHHHHHHH-HhcCCEEcCce
Confidence 457899999999999999999999999 5 6777777655 899999999999999999 89999999999
Q ss_pred EEEEEeecCCC
Q psy2347 76 LRVEISRGRGR 86 (207)
Q Consensus 76 l~V~~a~~k~~ 86 (207)
|+|++++++..
T Consensus 80 i~v~~~~~~~~ 90 (198)
T 2yh0_A 80 LKIRRPHDYQP 90 (198)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 193
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.5e-16 Score=115.86 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=66.0
Q ss_pred cEEEEcCC----CcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcC----HHH----HHHHHH--hcCCce
Q psy2347 10 TRVYVGGL----TETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSN----QID----AEAACD--SMNDQD 70 (207)
Q Consensus 10 ~~lfV~nL----p~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~----~e~----A~~Al~--~l~g~~ 70 (207)
++|||+|| |+.++|++|+++|++||+|.+|+++.| +++||||+|.+ +++ |.+|++ .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999 78999999995 322 888988 789999
Q ss_pred eCCcEEEEEEee
Q psy2347 71 LMGSKLRVEISR 82 (207)
Q Consensus 71 i~g~~l~V~~a~ 82 (207)
|.+++|+|++.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.63 E-value=6.9e-16 Score=129.09 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCcC-CcHHHHHHHHHhCCCeeEEEEeeC------CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 5 MMERGTRVYVGGLTET-VKKEDLELEFEKFGKLNSVWVAFN------PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d------~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
...+.++|||.|||++ +|+++|+++|++||.|+.|+|+.+ +++||||+|.++++|++|| .||++.|.+++|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 999999999999999999999876 4789999999999999999 9999999999999
Q ss_pred EEEeecCC
Q psy2347 78 VEISRGRG 85 (207)
Q Consensus 78 V~~a~~k~ 85 (207)
|++|++|+
T Consensus 285 V~~a~~k~ 292 (292)
T 2ghp_A 285 VSLADKKP 292 (292)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99999874
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.62 E-value=9.6e-16 Score=127.75 Aligned_cols=82 Identities=22% Similarity=0.215 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCcCC-cHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETV-KKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~-te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
..+.++|||.|||+++ |+++|+++|++|+.|+.|+|+.+ ++++|||+|+++++|++|++.||+..|.+++|+|++
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3467899999999995 99999999999999999999987 578999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2347 81 SRGRGRG 87 (207)
Q Consensus 81 a~~k~~~ 87 (207)
++++..+
T Consensus 261 a~~~~~~ 267 (284)
T 3smz_A 261 CAPGPPG 267 (284)
T ss_dssp CCSSSCH
T ss_pred ecCCCcc
Confidence 9987653
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=2e-15 Score=109.07 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=68.8
Q ss_pred CCCcEEEEcCC--CcCCc--------HHHHHHHHHhCCCeeEEEEeeC-------CCcEEEEEEcCHHHHHHHHHhcCCc
Q psy2347 7 ERGTRVYVGGL--TETVK--------KEDLELEFEKFGKLNSVWVAFN-------PPGFAFVEFSNQIDAEAACDSMNDQ 69 (207)
Q Consensus 7 ~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~V~~v~i~~d-------~rG~afV~F~~~e~A~~Al~~l~g~ 69 (207)
.+++.|.|.|+ |.++. +++|+++|++||+|++|+|+++ +++++||+|+++++|++|+++||++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47889999998 44443 4689999999999999999876 4799999999999999999999999
Q ss_pred eeCCcEEEEEEeecC
Q psy2347 70 DLMGSKLRVEISRGR 84 (207)
Q Consensus 70 ~i~g~~l~V~~a~~k 84 (207)
.+.+++|+|+++.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998653
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=4.1e-16 Score=120.76 Aligned_cols=81 Identities=19% Similarity=0.364 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEee----CCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAF----NPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~----d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
...+.++|||+|||+++|+++|+++|++|+.|..+.|.. .+++||||+|.++++|++||+ ||++.|.+++|+|++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 456789999999999999999999999998765522211 178999999999999999995 999999999999999
Q ss_pred eecCCC
Q psy2347 81 SRGRGR 86 (207)
Q Consensus 81 a~~k~~ 86 (207)
++++..
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 987654
No 198
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=4.3e-15 Score=123.76 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
.++.++|||.|||+++|+++|+++|++|++|+.|+|+.+ +++||||+|.++++|++|++.|++..|.+++|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356789999999999999999999999999999999877 468999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2347 81 SRGRGRG 87 (207)
Q Consensus 81 a~~k~~~ 87 (207)
+.++...
T Consensus 172 a~~~~~~ 178 (284)
T 3smz_A 172 TDAGQLT 178 (284)
T ss_dssp CCGGGCC
T ss_pred CCCCCCC
Confidence 9876543
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=4.7e-15 Score=124.01 Aligned_cols=81 Identities=11% Similarity=0.215 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCC-CeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFG-KLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
.+.++|||.|||+++|+++|+++|++|+ +|+.|+|+.+ +++||||+|.++++|++|++.||++.|.+++|.|+++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999 9999999876 6899999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2347 82 RGRGRG 87 (207)
Q Consensus 82 ~~k~~~ 87 (207)
.++...
T Consensus 195 ~~~~~~ 200 (292)
T 2ghp_A 195 NPLEKS 200 (292)
T ss_dssp CCC---
T ss_pred CCCccc
Confidence 876543
No 200
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.56 E-value=7.5e-15 Score=126.56 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcC--CCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeC---Cc--EEE
Q psy2347 5 MMERGTRVYVGG--LTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLM---GS--KLR 77 (207)
Q Consensus 5 ~~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~---g~--~l~ 77 (207)
..+++++|||+| |+..+||++|+++|++||+|++|.|.. .|+||||+|++.++|++||++||++++. ++ .|.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 467889999999 578999999999999999999988766 5999999999999999999999999883 34 566
Q ss_pred EEEee
Q psy2347 78 VEISR 82 (207)
Q Consensus 78 V~~a~ 82 (207)
|.+++
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 66663
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=8.2e-15 Score=108.08 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=67.5
Q ss_pred CCcEEEEcCC--CcCC---cHHHHHHHHHhCCCeeEEEEeeCC---------CcEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2347 8 RGTRVYVGGL--TETV---KKEDLELEFEKFGKLNSVWVAFNP---------PGFAFVEFSNQIDAEAACDSMNDQDLMG 73 (207)
Q Consensus 8 ~~~~lfV~nL--p~~~---te~~L~~~F~~~G~V~~v~i~~d~---------rG~afV~F~~~e~A~~Al~~l~g~~i~g 73 (207)
++++|+|.|| |.++ .+++|+++|++||+|++|+|+++. ++++||+|+++++|++|++.||+..+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 7889999998 3332 468999999999999999998761 3899999999999999999999999999
Q ss_pred cEEEEEEeec
Q psy2347 74 SKLRVEISRG 83 (207)
Q Consensus 74 ~~l~V~~a~~ 83 (207)
++|+|+++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=3.4e-15 Score=107.67 Aligned_cols=68 Identities=28% Similarity=0.467 Sum_probs=59.4
Q ss_pred EcCCCcCCcHHHHHHHH------------HhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 14 VGGLTETVKKEDLELEF------------EKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 14 V~nLp~~~te~~L~~~F------------~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
+.+||+++++++|+++| ++||+|++|+|+++ +++||||+|+++++|++|++.||++.|.+++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34555666777777666 99999999999987 589999999999999999999999999999999
Q ss_pred EEEe
Q psy2347 78 VEIS 81 (207)
Q Consensus 78 V~~a 81 (207)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=1.4e-14 Score=119.98 Aligned_cols=80 Identities=28% Similarity=0.354 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcCC-ceeC---CcEEEE
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMND-QDLM---GSKLRV 78 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~g-~~i~---g~~l~V 78 (207)
.+.++|||.|||+++|+++|+++|++||+|+.|+|+.+ +++||||+|+++++|++||+.||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 45789999999999999999999999999999999887 578999999999999999999954 4444 999999
Q ss_pred EEeecCCC
Q psy2347 79 EISRGRGR 86 (207)
Q Consensus 79 ~~a~~k~~ 86 (207)
+++++...
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99987543
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=8.7e-14 Score=101.95 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=67.4
Q ss_pred CCCCcEEEEcCC--CcCC--------cHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcCCceeCCc
Q psy2347 6 MERGTRVYVGGL--TETV--------KKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMNDQDLMGS 74 (207)
Q Consensus 6 ~~~~~~lfV~nL--p~~~--------te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~g~~i~g~ 74 (207)
..+++.|.|.|+ |.+. .+++|+++|++||+|++|.|+++ +++++||+|+++++|++|++.||+.++.++
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 346778999987 2221 24588999999999999999887 689999999999999999999999999999
Q ss_pred EEEEEEeec
Q psy2347 75 KLRVEISRG 83 (207)
Q Consensus 75 ~l~V~~a~~ 83 (207)
+|+|+++.+
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999864
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.9e-13 Score=98.74 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEcCCCcC-CcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC-HHHHHHHHHhcC--CceeCCcEEEEE
Q psy2347 4 GMMERGTRVYVGGLTET-VKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN-QIDAEAACDSMN--DQDLMGSKLRVE 79 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~-~e~A~~Al~~l~--g~~i~g~~l~V~ 79 (207)
..+++.+.|+|.||+++ +++++|+++|++|++|..|.++.+ .-.|||+|.+ +++|++|+++|+ +.+|++..++++
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 46788999999999999 999999999999999999999998 4489999999 899999999995 678899999988
Q ss_pred Eee
Q psy2347 80 ISR 82 (207)
Q Consensus 80 ~a~ 82 (207)
+.+
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.4e-13 Score=94.20 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCCc----CCcH----HHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 6 MERGTRVYVGGLTE----TVKK----EDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 6 ~~~~~~lfV~nLp~----~~te----~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
=++..+|+|.-++. ++.+ .+|++.|++||+|..++|+.+ .+||+|++.++|.+||+ ||+.+|.++.|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 35677888887662 2323 678999999999999999988 49999999999999998 999999999999
Q ss_pred EEEeecCC
Q psy2347 78 VEISRGRG 85 (207)
Q Consensus 78 V~~a~~k~ 85 (207)
|++++|.-
T Consensus 80 V~lkt~dW 87 (91)
T 2dnr_A 80 IALKSPSG 87 (91)
T ss_dssp EEECCCSS
T ss_pred EEeCCCCc
Confidence 99998753
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=9e-12 Score=87.47 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=64.7
Q ss_pred CCCCCCcEEEEcCCCcC------CcH---HHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCc
Q psy2347 4 GMMERGTRVYVGGLTET------VKK---EDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGS 74 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~------~te---~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~ 74 (207)
.+=++..||+|.-++.. ..+ .+|++.|++||+|+.++|+.| -+||+|.+.++|.+||+ ||+.+|.++
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 34577889999888632 221 568899999999999999988 49999999999999998 999999999
Q ss_pred EEEEEEeec
Q psy2347 75 KLRVEISRG 83 (207)
Q Consensus 75 ~l~V~~a~~ 83 (207)
.|+|++..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999997654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.02 E-value=9.1e-10 Score=88.64 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=63.1
Q ss_pred CCcEEEEcCCC-----cCCcHHHHHHHHHhCCCeeEEEEeeC---------CCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2347 8 RGTRVYVGGLT-----ETVKKEDLELEFEKFGKLNSVWVAFN---------PPGFAFVEFSNQIDAEAACDSMNDQDLMG 73 (207)
Q Consensus 8 ~~~~lfV~nLp-----~~~te~~L~~~F~~~G~V~~v~i~~d---------~rG~afV~F~~~e~A~~Al~~l~g~~i~g 73 (207)
+...|.+.++- .+-.+++|++.|++||+|++|.|+++ +++++||+|++.++|++|++.||+..+.+
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 34455555542 23457889999999999999999854 46899999999999999999999999999
Q ss_pred cEEEEEEeec
Q psy2347 74 SKLRVEISRG 83 (207)
Q Consensus 74 ~~l~V~~a~~ 83 (207)
++|.|+++..
T Consensus 203 r~i~~~~~~~ 212 (222)
T 3dxb_A 203 RKVVAEVYDQ 212 (222)
T ss_dssp SBCEEEECCH
T ss_pred eEEEEEEcCH
Confidence 9999999754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=5e-09 Score=75.14 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEcCCCcCCcHHHHHHHHHhC-----CCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEE
Q psy2347 4 GMMERGTRVYVGGLTETVKKEDLELEFEKF-----GKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRV 78 (207)
Q Consensus 4 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V 78 (207)
...+..++|-|-+||..++++.|+.+++++ +.|++|.++.| ..=|+|+|+|..+|-||.-+|++.+|.+++|+|
T Consensus 16 ~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 16 NSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp CTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 344557889999999999999999999999 99999999998 678999999999999999999999999999998
Q ss_pred EE
Q psy2347 79 EI 80 (207)
Q Consensus 79 ~~ 80 (207)
--
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=4.4e-07 Score=64.37 Aligned_cols=77 Identities=29% Similarity=0.280 Sum_probs=65.3
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhC-----CCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKF-----GKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
....++|.|.|||++++++.|+-+|++- |+|+.|+... .-|+|+|.+.+.|+++|++ ..+.|++..|.|..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 3456799999999999999999999983 5788888764 5899999999999999975 58999999999987
Q ss_pred eecCCC
Q psy2347 81 SRGRGR 86 (207)
Q Consensus 81 a~~k~~ 86 (207)
..++..
T Consensus 81 ~~~~~~ 86 (104)
T 2dhx_A 81 APPRAP 86 (104)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 666544
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=1.2e-06 Score=62.41 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCcCC-c----HHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 8 RGTRVYVGGLTETV-K----KEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 8 ~~~~lfV~nLp~~~-t----e~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
-.++|+|.||+.++ + .++++++|.+|.++.....++..+ -..|.|.++++|.+|-..||...+.+++|+|-++.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 35689999998765 2 257789999999999988887744 57899999999999999999999999999999997
Q ss_pred cCC
Q psy2347 83 GRG 85 (207)
Q Consensus 83 ~k~ 85 (207)
+.+
T Consensus 83 ~~~ 85 (104)
T 1wey_A 83 TLH 85 (104)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.12 E-value=1.5e-05 Score=58.13 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=58.8
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCC-cEEEEEEe
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMG-SKLRVEIS 81 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g-~~l~V~~a 81 (207)
....+.|.|-..|++.+ +.|.++|++||+|++..... ...+..|+|+++.+|++||.+ |++.|.+ ..|-|+..
T Consensus 21 ~~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~-~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSN-TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp CGGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECS-SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCC-CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 34467888999998864 55667899999999988733 467999999999999999986 9999974 66777664
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.08 E-value=1.3e-05 Score=55.89 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=54.4
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-------CCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-------PPGFAFVEFSNQIDAEAACDSMNDQDLMG 73 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-------~rG~afV~F~~~e~A~~Al~~l~g~~i~g 73 (207)
++|.|.+||+.+||+++.+.+....++.....+.- .-.-|+|.|.+.|++....+.++++.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 58999999999999999999999887776665443 23579999999999999999999998743
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.99 E-value=2e-05 Score=55.32 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcC
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~ 67 (207)
...+.++| .+|+++...||.++|+.|+.| .|+.+.| -.|||.|.+++.|..|+..++
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--CeEEEEecCHHHHHHHHHhcc
Confidence 34556667 999999999999999999854 4555655 489999999999999998763
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.77 E-value=4.6e-05 Score=53.53 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=55.9
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-------CCcEEEEEEcCHHHHHHHHHhcCCceeCCc----
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-------PPGFAFVEFSNQIDAEAACDSMNDQDLMGS---- 74 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-------~rG~afV~F~~~e~A~~Al~~l~g~~i~g~---- 74 (207)
-..+.+|.|..||+.+||+++.+.+...-++.....+.- .-.-|+|.|.+.|++....+.++++.+.+.
T Consensus 6 ~~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 6 HHHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred cccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 345679999999999999999988877655433322211 225689999999999999999999887443
Q ss_pred -EEEEEEe
Q psy2347 75 -KLRVEIS 81 (207)
Q Consensus 75 -~l~V~~a 81 (207)
+..|++|
T Consensus 86 ~~a~VE~A 93 (97)
T 2l08_A 86 YPAVVEFA 93 (97)
T ss_dssp EEEEEEEC
T ss_pred eeeEEEec
Confidence 3445555
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.73 E-value=2.3e-05 Score=55.14 Aligned_cols=57 Identities=21% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcC
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~ 67 (207)
...+.++| .+|+++...||.++|+.|+ -..|+.+.| -.|||.|.+++.|..|+..+.
T Consensus 4 ~R~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD--TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 4 GSDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD--TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET--TEEEEEEEEECHHHHHHHHHT
T ss_pred CCCeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC--CeEEEEecCHHHHHHHHHhcc
Confidence 34456677 9999999999999999998 445666665 489999999999999999764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.60 E-value=5.5e-05 Score=55.89 Aligned_cols=75 Identities=20% Similarity=0.163 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeE-EEEee-------------C-----CCcEEEEEEcCHHHHHHHHHhcC
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNS-VWVAF-------------N-----PPGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~-v~i~~-------------d-----~rG~afV~F~~~e~A~~Al~~l~ 67 (207)
.....|.|-+.|++.+...| ++|++||.|++ +.+.. . ...+..|+|+++.+|++||.. |
T Consensus 5 ~~e~~VtVFGFp~~~~~~VI-~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMANQVI-AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-N 82 (132)
T ss_dssp ---CEEEEECCCGGGHHHHH-HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-T
T ss_pred cCceEEEEEecCHHHHHHHH-HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-C
Confidence 44567788899887765555 68999999876 22111 0 246889999999999999986 9
Q ss_pred CceeCCcEEEEEEeec
Q psy2347 68 DQDLMGSKLRVEISRG 83 (207)
Q Consensus 68 g~~i~g~~l~V~~a~~ 83 (207)
++.|.+..|-|...++
T Consensus 83 G~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TCEETTEECEEEECCH
T ss_pred CeEeCcEEEEEEECCH
Confidence 9999998888887653
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.47 E-value=4.8e-05 Score=67.68 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=44.9
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHh
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~ 65 (207)
.++|||. +|.++++++|.++|++||+|.++.+-++..-||.|||.++++|+++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4789997 8999999999999999999999988888778999999999999988754
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.54 E-value=0.0013 Score=49.24 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=26.1
Q ss_pred EEEEeeC---CCcEEEEEEcCHHHHHHHHHhcCCc
Q psy2347 38 SVWVAFN---PPGFAFVEFSNQIDAEAACDSMNDQ 69 (207)
Q Consensus 38 ~v~i~~d---~rG~afV~F~~~e~A~~Al~~l~g~ 69 (207)
.++|+++ +++|+||+|.++++|++|++.++..
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhccc
Confidence 3455555 7899999999999999999887653
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.44 E-value=0.00095 Score=49.76 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=35.7
Q ss_pred CCcEEEEEEcCHHHHHHHHHhc-CCceeCCcEEEEEEeecC
Q psy2347 45 PPGFAFVEFSNQIDAEAACDSM-NDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 45 ~rG~afV~F~~~e~A~~Al~~l-~g~~i~g~~l~V~~a~~k 84 (207)
.+++++|+|.++++|++|+++| |+.+|++ .|.|++++++
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 6899999999999999999999 9999999 9999987653
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.24 E-value=0.04 Score=49.45 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCC
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMND 68 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g 68 (207)
....++|. +|..+...+|.++|+.|+. .+|..+.+ -.|||.|.++++|..++++++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd--t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD--TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS--SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC--CeEEEEECCHHHHHHHHHHHHh
Confidence 45566666 8888999999999999995 45555544 5799999999999999998753
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=94.47 E-value=0.09 Score=34.43 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=44.5
Q ss_pred EEEEcC-CCcCCcHHHHHHHHHhCCC-----eeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 11 RVYVGG-LTETVKKEDLELEFEKFGK-----LNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 11 ~lfV~n-Lp~~~te~~L~~~F~~~G~-----V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
+|||.. -...++..+|..++..-.. |-.|+|..+ |.||+-.. +.|+++++.|+...+.+++|.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~---~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN---ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS---CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC---cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 566632 1345677788888876544 556777644 89999876 45778888899999999999998764
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=90.97 E-value=1.6 Score=29.98 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=52.9
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCc-------eeCCcEEE
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ-------DLMGSKLR 77 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~-------~i~g~~l~ 77 (207)
.....+-|-|-|||..+-.+++.-.....+---.|..+ .+-|.|.|.+.++...|+.+|-.+ +|.+..+.
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 34567888899999999998888777777776666665 468999999999988888765332 34555555
Q ss_pred EE
Q psy2347 78 VE 79 (207)
Q Consensus 78 V~ 79 (207)
|-
T Consensus 85 vi 86 (129)
T 4eyt_A 85 VI 86 (129)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 224
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=84.72 E-value=2.4 Score=29.41 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=47.2
Q ss_pred CCCcCCcHHHHHHHH-HhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecCCC
Q psy2347 16 GLTETVKKEDLELEF-EKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGRGR 86 (207)
Q Consensus 16 nLp~~~te~~L~~~F-~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k~~ 86 (207)
.++..++-+||+... +.||.-.++..+.+ .+.|-..+.++.++||+.|+.. ..-+.|+|-+..++..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~---EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN---ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGST 90 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS---SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc---eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCCC
Confidence 356677777776554 45888888877743 5788999999999999987644 3444566666666543
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=82.74 E-value=3.6 Score=25.64 Aligned_cols=56 Identities=11% Similarity=-0.004 Sum_probs=42.7
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhc
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM 66 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l 66 (207)
..+|.|.++.-..=...|++.+.+ -.|..+.+... ...+.|+|++.++..++|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-CCEEEEEECCHHHHHHHHHHc
Confidence 357888888766667888999999 78888877654 457788888777777888763
No 226
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=79.13 E-value=5.2 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=28.4
Q ss_pred CeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCc
Q psy2347 35 KLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69 (207)
Q Consensus 35 ~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~ 69 (207)
.|.+|..+...++|-|||=+++.++++|++.+...
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 36677666558999999999999999999876544
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=76.93 E-value=11 Score=25.37 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=27.4
Q ss_pred eeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCc
Q psy2347 36 LNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69 (207)
Q Consensus 36 V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~ 69 (207)
|.+|.++...++|.||+++..+++..+|+.+.+.
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 6666666557999999999999998888876553
No 228
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=76.51 E-value=9.6 Score=22.60 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=38.2
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC---HHHHHHHHHh
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN---QIDAEAACDS 65 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~---~e~A~~Al~~ 65 (207)
.++.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA-LEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-TTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc-CCEEEEEECCCCCHHHHHHHHHH
Confidence 46778777655455778888988888888887665 5678888874 3444555554
No 229
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=75.64 E-value=7 Score=29.82 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=32.4
Q ss_pred cEEEEcCCCc-C--------CcHHHHHHHH--HhCCCeeEEEEeeC--CCcEEEEEEcC
Q psy2347 10 TRVYVGGLTE-T--------VKKEDLELEF--EKFGKLNSVWVAFN--PPGFAFVEFSN 55 (207)
Q Consensus 10 ~~lfV~nLp~-~--------~te~~L~~~F--~~~G~V~~v~i~~d--~rG~afV~F~~ 55 (207)
.++.|-|+|. . .+.++|++.| +.|.+++...+..+ ..++|.|+|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecC
Confidence 3667778886 2 3457899977 89988764444333 66789999985
No 230
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=75.04 E-value=12 Score=22.93 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=41.5
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc----CHHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS----NQIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~----~~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ..-+.|+|+ +.++..++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 36778887665556788899998888888877665 557889985 566777777763
No 231
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=73.74 E-value=12 Score=25.71 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=44.1
Q ss_pred CCCcCCcHHHHHHHHH-hCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 16 GLTETVKKEDLELEFE-KFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 16 nLp~~~te~~L~~~F~-~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
.++..+.-++|+.... .||.-.++..+.+ .-.|-..+.++.++||+.|+.. ..-+.|+|-+..
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn---EL~iPL~~Q~DLDkAvelLDrs-~~~kSLrIlL~~ 98 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN---ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVI 98 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET---TEEEECCCHHHHHHHHHHHHHC-SSCCSEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc---eeEEecccHHHHHHHHHHhccC-ccccceEEEEec
Confidence 3566777777776554 5888888888765 5778889999999999976533 233444554443
No 232
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=72.96 E-value=12 Score=25.25 Aligned_cols=65 Identities=23% Similarity=0.229 Sum_probs=46.2
Q ss_pred CCCcCCcHHHHHHHHH-hCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEeecC
Q psy2347 16 GLTETVKKEDLELEFE-KFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISRGR 84 (207)
Q Consensus 16 nLp~~~te~~L~~~F~-~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~~k 84 (207)
.++..+.-++|+.... .||.-.++..+.+ .-.|-..+.++.++|++.|+. ...-+.|+|-+..++
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn---EL~iPL~~Q~DLDkAvelLDr-s~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN---ELSILLKNQDDLDKAIDILDR-SSSMKSLRILLLSQD 84 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS---SCEEECCSHHHHHHHHHHHHH-STTTTEEEEEEEECS
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc---eeEEeccCHHHHHHHHHHhcc-CccccceEEEEEcCC
Confidence 3566777777776554 5888888887755 567888999999999997653 334456666666554
No 233
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=72.31 E-value=13 Score=22.27 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHh
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDS 65 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~ 65 (207)
...+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.
T Consensus 4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA-TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT-TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457888888777667788899988878888887665 5678888874 2344455544
No 234
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=71.72 E-value=16 Score=22.98 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=41.5
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc----CHHHHHHHHHhc
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS----NQIDAEAACDSM 66 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~----~~e~A~~Al~~l 66 (207)
..+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+ +.++..++|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD-NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST-TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 456778888666556778889998888888887655 567888886 355666777664
No 235
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=73.09 E-value=0.9 Score=31.97 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=31.8
Q ss_pred cCCcHHHHHHHHHhCCCeeEEEEeeC----CCcEE--EEEEcCHHHHHHHHHhcCCce
Q psy2347 19 ETVKKEDLELEFEKFGKLNSVWVAFN----PPGFA--FVEFSNQIDAEAACDSMNDQD 70 (207)
Q Consensus 19 ~~~te~~L~~~F~~~G~V~~v~i~~d----~rG~a--fV~F~~~e~A~~Al~~l~g~~ 70 (207)
...++++|.++..+.. +..+.+.+. ..-|. +=.|.+.++|++|++.|....
T Consensus 32 a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 32 SSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3345667777777765 344544432 12232 237899999999999886544
No 236
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=69.96 E-value=14 Score=21.47 Aligned_cols=54 Identities=17% Similarity=0.043 Sum_probs=37.4
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc---CHHHHHHHHHh
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS---NQIDAEAACDS 65 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~---~~e~A~~Al~~ 65 (207)
++.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+++ +.++..++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE-KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT-TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC-CCEEEEEECCCCCHHHHHHHHHH
Confidence 4556666555556778888888877888877665 567888886 44555666654
No 237
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=68.88 E-value=24 Score=23.87 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=41.5
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++|+.+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~-~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA-TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT-TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC-CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45778888766666789999998878888887665 5688899973 45566777653
No 238
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=68.80 E-value=9.9 Score=22.88 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=40.2
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc---CHHHHHHHHHh
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS---NQIDAEAACDS 65 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~---~~e~A~~Al~~ 65 (207)
.++.|.++.-..-...|++.+.+.-.|..+.+... ..-+.|+|+ +.++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA-LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT-TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-CCEEEEEECCCCCHHHHHHHHHH
Confidence 46778777666566788999999888888887665 567888884 45566666665
No 239
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=68.26 E-value=10 Score=26.39 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=42.9
Q ss_pred CCCcCCcHHHHHHHHH-hCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 16 GLTETVKKEDLELEFE-KFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 16 nLp~~~te~~L~~~F~-~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
.++..+.-++|+.... .||...++..+.+ .-.|-..+.++.++||+.|+.. ..-+.|+|-+..
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn---EL~IPL~~Q~DLDkAvelLDrs-~~mkSLRIlL~~ 109 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN---ELSILLKNQDDLDKAIDILDRS-SSMKSLRILLLS 109 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS---SCEEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc---eEEEecccHHHHHHHHHHhccC-ccccceEEEEec
Confidence 3466677777776554 5888888877755 5678888999999999976533 233444554443
No 240
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=66.50 E-value=13 Score=24.15 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=40.1
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~-~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE-NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT-TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc-CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 45677777655455678888888888888887765 5688899863 45666777664
No 241
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=66.46 E-value=19 Score=21.92 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=41.1
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHhc
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDSM 66 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~l 66 (207)
..+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE-EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG-GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc-CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 446778888776667788999988877877777654 5578888864 45566666653
No 242
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=65.47 E-value=7.3 Score=28.09 Aligned_cols=34 Identities=9% Similarity=-0.060 Sum_probs=21.7
Q ss_pred CCCeeEEEEeeC-CCcEEEEE-EcCHHHHHHHHHhc
Q psy2347 33 FGKLNSVWVAFN-PPGFAFVE-FSNQIDAEAACDSM 66 (207)
Q Consensus 33 ~G~V~~v~i~~d-~rG~afV~-F~~~e~A~~Al~~l 66 (207)
+-.|+.|+|..| +...+||+ |-+.++.+.+++.|
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHH
Confidence 457899999988 55567777 55555444444433
No 243
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=63.77 E-value=13 Score=27.27 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=30.4
Q ss_pred HHHHHHhCCCeeEEEEeeC--------------------CCcEEEEEEcCHHHHHHHHHh
Q psy2347 26 LELEFEKFGKLNSVWVAFN--------------------PPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 26 L~~~F~~~G~V~~v~i~~d--------------------~rG~afV~F~~~e~A~~Al~~ 65 (207)
..++|.+||.+.-+++.-| .--|.+|++.|++..+++.++
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 3468999999877766443 125899999999998888754
No 244
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=63.50 E-value=13 Score=29.01 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=28.1
Q ss_pred eeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCcee
Q psy2347 36 LNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDL 71 (207)
Q Consensus 36 V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i 71 (207)
|.+|.+....|+|-|||=+++.++++||+.+.....
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 555544333799999999999999999998776543
No 245
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=62.81 E-value=18 Score=24.94 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=34.0
Q ss_pred cEEEEcCCCcCCcHHHHHHHHH-------hCCCeeEEEEeeC-C-----Cc---EEEEEEcCHHHHHHHH
Q psy2347 10 TRVYVGGLTETVKKEDLELEFE-------KFGKLNSVWVAFN-P-----PG---FAFVEFSNQIDAEAAC 63 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~-------~~G~V~~v~i~~d-~-----rG---~afV~F~~~e~A~~Al 63 (207)
+.|.+-.|.+++++++++++.+ +.-.|+.+++-.+ + ++ ..+++|+|.++.+.-+
T Consensus 12 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 3444557888888877655543 3445777776555 1 22 3457999988876543
No 246
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=62.71 E-value=21 Score=20.98 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=38.8
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC---HHHHHHHHHh
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN---QIDAEAACDS 65 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~---~e~A~~Al~~ 65 (207)
++.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP-KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT-TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc-CCEEEEEECCCCCHHHHHHHHHH
Confidence 4667777665556778888988888888887765 5678888864 4555666665
No 247
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=62.39 E-value=20 Score=20.77 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=40.0
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHh
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDS 65 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~ 65 (207)
++.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK-KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT-TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888776667788899998877888877665 5678888863 4555666665
No 248
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=62.14 E-value=22 Score=20.99 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=38.5
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA-NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT-TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc-CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 35677777554445678888888877887777665 5678888863 45566666653
No 249
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=61.96 E-value=22 Score=25.40 Aligned_cols=72 Identities=22% Similarity=0.222 Sum_probs=46.4
Q ss_pred cEEEEcCCCcCCcHHHH---HHHHHhCCCeeEEEEeeCCCcEEEEEEc--CHHHHHHHHHhcC-------C---ceeCCc
Q psy2347 10 TRVYVGGLTETVKKEDL---ELEFEKFGKLNSVWVAFNPPGFAFVEFS--NQIDAEAACDSMN-------D---QDLMGS 74 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L---~~~F~~~G~V~~v~i~~d~rG~afV~F~--~~e~A~~Al~~l~-------g---~~i~g~ 74 (207)
..|.|..+|+.+..+.. +.+-..|..-+...|+-.-.+..-|.|+ +.|+.++|++.|- + ..+.+.
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn 122 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGN 122 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCC
Confidence 45677888887654432 2334456544555666665677788885 8889999987643 2 246777
Q ss_pred EEEEEEe
Q psy2347 75 KLRVEIS 81 (207)
Q Consensus 75 ~l~V~~a 81 (207)
.|.|.+.
T Consensus 123 ~l~i~it 129 (170)
T 4hhu_A 123 RLVIVIT 129 (170)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7777664
No 250
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.93 E-value=17 Score=24.17 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=37.2
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc-CHHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS-NQIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~-~~e~A~~Al~~l 66 (207)
.+|.|. +.-..-...|++.+.+.-.|..+.+... ...+.|++. +.+++.++|+.+
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~-~~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE-DQMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT-TTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC-CCEEEEEEeCCHHHHHHHHHHh
Confidence 345565 5433334678888888877888888765 567788875 556677777653
No 251
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=61.78 E-value=22 Score=20.95 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=39.1
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA-EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778777654455678888888877888877665 5678888863 45566666653
No 252
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=61.60 E-value=40 Score=23.90 Aligned_cols=46 Identities=4% Similarity=-0.039 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcCC
Q psy2347 23 KEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMND 68 (207)
Q Consensus 23 e~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~g 68 (207)
.+++.+.+.++-+|..|..+.. ..-++.|.+.+.++.++.++.+..
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeeeCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 5678888889999999987764 445778899999999999988764
No 253
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=59.95 E-value=25 Score=21.04 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=39.2
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHhc
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDSM 66 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~l 66 (207)
+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE-EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT-TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5667777655455678888888888888877665 5678888863 45666777653
No 254
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=59.56 E-value=24 Score=20.74 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=40.7
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc----CHHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS----NQIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~----~~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+ +.++..++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE-TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT-TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35677777766666778899998888888877665 567888886 345566667653
No 255
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=58.97 E-value=35 Score=23.69 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=31.4
Q ss_pred EEEcCCCcCCcHHHHHHHHHh-------CCCeeEEEEeeC----CCc---EEEEEEcCHHHHHHHH
Q psy2347 12 VYVGGLTETVKKEDLELEFEK-------FGKLNSVWVAFN----PPG---FAFVEFSNQIDAEAAC 63 (207)
Q Consensus 12 lfV~nLp~~~te~~L~~~F~~-------~G~V~~v~i~~d----~rG---~afV~F~~~e~A~~Al 63 (207)
|.+-.|.+++++++++++.+. .-.|+.+.+-.+ .++ ..+++|+|.++.+.-+
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHHHHh
Confidence 444467888888766655543 234666666555 122 3456899888776443
No 256
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=57.72 E-value=16 Score=21.65 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=35.1
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHh
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~ 65 (207)
++.|.++.-..-...|++.+.+. .|..+.+... ...+.|+++..++..++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~-~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE-EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT-TTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC-CCEEEEEECCHHHHHHHHHH
Confidence 45565554443446688888888 7888877665 56788888865445556654
No 257
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=61.87 E-value=2.2 Score=29.48 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=19.0
Q ss_pred CCcEEEEEEcCHHHHHHHHHhcCC
Q psy2347 45 PPGFAFVEFSNQIDAEAACDSMND 68 (207)
Q Consensus 45 ~rG~afV~F~~~e~A~~Al~~l~g 68 (207)
+.+-|.|.|.+.++...|+.+|-.
T Consensus 76 kegqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 76 KEGQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 568899999998888888776544
No 258
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=56.39 E-value=25 Score=21.33 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=38.9
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc----CHHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS----NQIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~----~~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+ +.++..++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM-AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT-TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778887666666778888888877877766544 567888886 345566666653
No 259
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=55.67 E-value=43 Score=22.41 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=31.3
Q ss_pred EEEcCCCcCCcHHHHHHHHH-------hCCCeeEEEEeeC----CC---cEEEEEEcCHHHHHH
Q psy2347 12 VYVGGLTETVKKEDLELEFE-------KFGKLNSVWVAFN----PP---GFAFVEFSNQIDAEA 61 (207)
Q Consensus 12 lfV~nLp~~~te~~L~~~F~-------~~G~V~~v~i~~d----~r---G~afV~F~~~e~A~~ 61 (207)
|.+-.|.+++++++++++.+ +.-.|+.+++-.+ .+ -...++|+|.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHHHHH
Confidence 33446778887766554443 3556777777665 12 234579999888764
No 260
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=55.54 E-value=50 Score=23.07 Aligned_cols=53 Identities=8% Similarity=0.068 Sum_probs=33.5
Q ss_pred EEEEcCCCcCCcHHHHHHHHH-------hCCCeeEEEEeeC------CCc--E-EEEEEcCHHHHHHHH
Q psy2347 11 RVYVGGLTETVKKEDLELEFE-------KFGKLNSVWVAFN------PPG--F-AFVEFSNQIDAEAAC 63 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~-------~~G~V~~v~i~~d------~rG--~-afV~F~~~e~A~~Al 63 (207)
.|.+-.|++++++++++++.+ +.-.|+.+++-.+ .++ + .+++|+|.++.+.-+
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 444557888888876655543 2455777766554 122 3 457999988876544
No 261
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=55.12 E-value=30 Score=20.33 Aligned_cols=55 Identities=7% Similarity=0.100 Sum_probs=37.2
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc---CHHHHHHHHHhc
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS---NQIDAEAACDSM 66 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~---~~e~A~~Al~~l 66 (207)
+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+ +.++..++++.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV-TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT-TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-CCEEEEEECCCCCHHHHHHHHHHC
Confidence 5667777654455678888888877877766554 567888886 345556666653
No 262
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=54.66 E-value=46 Score=23.16 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=27.6
Q ss_pred EEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc----CHHHHHHHHHhc
Q psy2347 12 VYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS----NQIDAEAACDSM 66 (207)
Q Consensus 12 lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~----~~e~A~~Al~~l 66 (207)
|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+ +.++..++|+.+
T Consensus 78 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 78 FDIEGMTCAACANRIEKRLNKIEGVANAPVNFA-LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEESSCCSSSHHHHHHHHHTTSSSEEECCEETT-TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc-CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 444454444444455555555545555444433 446666765 345555555543
No 263
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=54.51 E-value=8.2 Score=25.67 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=27.7
Q ss_pred CcHHHHHHHHHhCCCe-eEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCc
Q psy2347 21 VKKEDLELEFEKFGKL-NSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGS 74 (207)
Q Consensus 21 ~te~~L~~~F~~~G~V-~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~ 74 (207)
-||++|+++++.|-.- ..|+ .+|...+.++.++|.+..+..+|+-+
T Consensus 33 ktedelkkyleefrkesqnik--------vlilvsndeeldkakelaqkmeidvr 79 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK--------VLILVSNDEELDKAKELAQKMEIDVR 79 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE--------EEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred ccHHHHHHHHHHHHhhccCeE--------EEEEEcChHHHHHHHHHHHhhceeee
Confidence 5889999998887542 2222 23445566777777765444444433
No 264
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=51.89 E-value=40 Score=23.35 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=29.1
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc----CHHHHHHHHHh
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS----NQIDAEAACDS 65 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~----~~e~A~~Al~~ 65 (207)
+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+ +.++..++|+.
T Consensus 83 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~ 140 (149)
T 2ew9_A 83 ELTITGMTCASCVHNIESKLTRTNGITYASVALA-TSKALVKFDPEIIGPRDIIKIIEE 140 (149)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT-TTEEEEECCTTTSCHHHHHHHHHH
T ss_pred EEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC-CCEEEEEECCCCCCHHHHHHHHHh
Confidence 4455555443334556666666655666655443 446666665 34445555554
No 265
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=51.02 E-value=37 Score=20.21 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=40.2
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC--HHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN--QIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~--~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~-~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA-TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT-TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec-CCEEEEEECCCCHHHHHHHHHHc
Confidence 36778888766666778899998888888887665 5678888875 34455566553
No 266
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=49.62 E-value=34 Score=19.45 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=37.6
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHhc
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDSM 66 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~l 66 (207)
+|.|.++.-..-...|++.+...-.|..+.+... ...+.|+|+. .++..++++.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE-AGKVDVSFDADKVSVKDIADAIEDQ 63 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec-CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5677777554445668888888877888877654 5678888863 45556666653
No 267
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=49.62 E-value=57 Score=21.99 Aligned_cols=62 Identities=6% Similarity=0.027 Sum_probs=35.9
Q ss_pred CCCCCCCCCcEEEEcCCCcCCcHHHHHHHHH-------hCCCeeEEEEeeC-C-------C---cEEEEEEcCHHHHHHH
Q psy2347 1 MSDGMMERGTRVYVGGLTETVKKEDLELEFE-------KFGKLNSVWVAFN-P-------P---GFAFVEFSNQIDAEAA 62 (207)
Q Consensus 1 ms~~~~~~~~~lfV~nLp~~~te~~L~~~F~-------~~G~V~~v~i~~d-~-------r---G~afV~F~~~e~A~~A 62 (207)
|++.....-+.|.+-.|.++++++++.++.+ +.-.|+.+++-.+ + + -..+++|+|.++.+.-
T Consensus 1 m~~~~~~mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 1 MATRTPKLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp --CCCCCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred CCCCCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 4433332344555567888888877655443 3555777776555 1 2 2345689998887643
No 268
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=48.52 E-value=40 Score=19.86 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=39.6
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA-TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG-GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46778888766666778899988877888776654 5577888863 45556666653
No 269
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=46.83 E-value=30 Score=23.25 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=33.4
Q ss_pred EEEcCCCcCCcHHHHHHHHHhCCCe---e--EEEEeeCCCcEEEEEEcCHHHHHHHHHh
Q psy2347 12 VYVGGLTETVKKEDLELEFEKFGKL---N--SVWVAFNPPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 12 lfV~nLp~~~te~~L~~~F~~~G~V---~--~v~i~~d~rG~afV~F~~~e~A~~Al~~ 65 (207)
|.+-.+|.+++-++|.+.+...-.+ . .++.+-+ -=-+|++.+.++.+.|+..
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eGD~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EGDPCTVSSQLELEEAFRL 73 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SSCCEECCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CCCcccccCHHHHHHHHHH
Confidence 4455578889988888766542222 2 2333322 1346899999999999984
No 270
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=45.09 E-value=56 Score=22.12 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=33.0
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhC--------CCeeEEEEee------C----CC-cEEEEEEcCHHHHHHHHHhcCCcee
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKF--------GKLNSVWVAF------N----PP-GFAFVEFSNQIDAEAACDSMNDQDL 71 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~--------G~V~~v~i~~------d----~r-G~afV~F~~~e~A~~Al~~l~g~~i 71 (207)
.+|| |.+++++++++++.+++ +.|.+++..- . .+ -|.++.|+...++.+-++. ...+
T Consensus 6 ~~~I--l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler--~lr~ 81 (101)
T 1cqm_A 6 VNIV--LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLAR--ELRI 81 (101)
T ss_dssp EEEE--ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHH--HHHT
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHH--HhcC
Confidence 3454 35667777776655544 3455543211 1 12 4778889866555555442 2234
Q ss_pred CCcEEEE
Q psy2347 72 MGSKLRV 78 (207)
Q Consensus 72 ~g~~l~V 78 (207)
+...|+.
T Consensus 82 ~~~VlR~ 88 (101)
T 1cqm_A 82 RDNVRRV 88 (101)
T ss_dssp STTEEEE
T ss_pred CcceEEE
Confidence 4444443
No 271
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=44.37 E-value=28 Score=24.16 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhC-------C-CeeEEEEeeC----------CC-cEEEEEEcC-HHHHHHHH
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKF-------G-KLNSVWVAFN----------PP-GFAFVEFSN-QIDAEAAC 63 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~-------G-~V~~v~i~~d----------~r-G~afV~F~~-~e~A~~Al 63 (207)
..--.+|| |.+++++++++++.+++ + .|.+++..-. .+ -|.++.|+. ..++.+-|
T Consensus 8 ~~YE~~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~el 82 (110)
T 2j5a_A 8 RYYETVFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNEL 82 (110)
T ss_dssp EEEEEEEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHH
T ss_pred CcceEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHH
Confidence 33445566 45667777776655544 2 3444432111 22 467888877 44444433
No 272
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=44.31 E-value=35 Score=21.83 Aligned_cols=56 Identities=11% Similarity=-0.113 Sum_probs=36.4
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc-CHHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS-NQIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~-~~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|++. +.+++.++|+.+
T Consensus 24 ~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~-~~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 24 LSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPA-SRTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETT-TTEEEEESCCCHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECC-CCEEEEEecCCHHHHHHHHHHc
Confidence 35666666544445667888887767877777655 556777764 456666777653
No 273
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=44.21 E-value=2.3 Score=37.14 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=10.7
Q ss_pred HHHHHHhCCCeeEE
Q psy2347 26 LELEFEKFGKLNSV 39 (207)
Q Consensus 26 L~~~F~~~G~V~~v 39 (207)
|.+||.++++|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 66788888887766
No 274
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=43.72 E-value=85 Score=22.27 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=38.5
Q ss_pred CCcCCcHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHH-hcC
Q psy2347 17 LTETVKKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACD-SMN 67 (207)
Q Consensus 17 Lp~~~te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~-~l~ 67 (207)
++.....+++.+.+.++-+|.+|..+.- ..-++.|.+.+.++.++.+. .+.
T Consensus 76 ~~~~~~~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 76 LKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp ESSGGGHHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred ECCCCCHHHHHHHHhCCcCeEEEEEEecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 4433346788889999999999988765 34467789999999998884 444
No 275
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=42.77 E-value=9.7 Score=34.93 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=37.5
Q ss_pred CCCcCCcHHHHHHHHH----hCCCeeEEEEeeC----CCcEEEEEEcCHHHHHHHHHhcC
Q psy2347 16 GLTETVKKEDLELEFE----KFGKLNSVWVAFN----PPGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 16 nLp~~~te~~L~~~F~----~~G~V~~v~i~~d----~rG~afV~F~~~e~A~~Al~~l~ 67 (207)
.++.+.+--||.++|. .+|.|+++.|... .+.+++|.|.+.++|.+++..+.
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 3455555567888884 5788988876544 34567899999999998887653
No 276
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=42.35 E-value=48 Score=19.02 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=37.3
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHh
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDS 65 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~ 65 (207)
++.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVA-TGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETT-TTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEec-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5777777655555668888888777888777654 5678888864 3455666664
No 277
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=42.07 E-value=24 Score=28.46 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=25.6
Q ss_pred CcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEe
Q psy2347 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVA 42 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~ 42 (207)
...+.|+|||..++...|.++++. ..+..+.+|
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 346789999999999999999987 555554443
No 278
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=41.50 E-value=78 Score=21.23 Aligned_cols=43 Identities=7% Similarity=-0.045 Sum_probs=27.9
Q ss_pred HHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCce
Q psy2347 26 LELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70 (207)
Q Consensus 26 L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~ 70 (207)
|+++-+..+ ++.|.|..+ .+..+|.=.+.+++++|++.++..+
T Consensus 37 Ik~I~e~tG-v~~IdI~ed-dG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 37 IQQARKVPG-VTAIELDED-TGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp HHHHHTSTT-EEEEEEETT-TTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhC-CeEEEEEcC-CCEEEEEECCHHHHHHHHHHHHhhh
Confidence 444444444 333666533 4778887779999999999876543
No 279
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=41.40 E-value=35 Score=21.58 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=36.3
Q ss_pred CCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCc--EEEEEEcCHHHHHHHHHhcCCcee
Q psy2347 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPG--FAFVEFSNQIDAEAACDSMNDQDL 71 (207)
Q Consensus 7 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG--~afV~F~~~e~A~~Al~~l~g~~i 71 (207)
.....|-|+-+.....-+.|.+-+...+.-..| .....- .-+--|.+.++|+++++.|...-+
T Consensus 7 ~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 7 SGLYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLKDGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEETTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecCCcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 344556666666555556666666554532222 222111 223378999999999998865444
No 280
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=40.34 E-value=58 Score=19.44 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=35.6
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHh
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDS 65 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~ 65 (207)
+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .++..++++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~ 63 (80)
T 1jww_A 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA-LETVTVEYNPKEASVSDLKEAVDK 63 (80)
T ss_dssp EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS-SSEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677777554445668888888777777665443 5678888863 4555666655
No 281
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.29 E-value=37 Score=22.68 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=35.5
Q ss_pred EEcCCCcCCcHHHHHHHHHh-CC-CeeEEEEeeCC--CcEEEEEEcCHHHHHHHHHh
Q psy2347 13 YVGGLTETVKKEDLELEFEK-FG-KLNSVWVAFNP--PGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 13 fV~nLp~~~te~~L~~~F~~-~G-~V~~v~i~~d~--rG~afV~F~~~e~A~~Al~~ 65 (207)
++-.+...++..+|++.+++ |. +|..|..+..+ .--|+|++....+|......
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 33346778899999999887 44 35555544432 23599999877777665544
No 282
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=39.71 E-value=13 Score=30.17 Aligned_cols=34 Identities=9% Similarity=-0.053 Sum_probs=25.9
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEee
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAF 43 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~ 43 (207)
..+.|+|||..++...|.++++....++.+.+|.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4678999999999999999997654555554443
No 283
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=39.65 E-value=0.83 Score=34.05 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc
Q psy2347 24 EDLELEFEKFGKLNSVWVAFNPPGFAFVEFS 54 (207)
Q Consensus 24 ~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~ 54 (207)
+||.++|...|.|+.+ .+.|+|+||+.+
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ETTTTEEEEEEE
T ss_pred CcccccccceeEEEEE---ECCCCeeEEeeC
Confidence 4455555555555443 336899999976
No 284
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=39.52 E-value=85 Score=21.88 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=30.3
Q ss_pred EEEcCCCcCCcHHHHHHHH-------HhCCCeeEEEEeeC----CC-cE-EEEEEcCHHHHHH
Q psy2347 12 VYVGGLTETVKKEDLELEF-------EKFGKLNSVWVAFN----PP-GF-AFVEFSNQIDAEA 61 (207)
Q Consensus 12 lfV~nLp~~~te~~L~~~F-------~~~G~V~~v~i~~d----~r-G~-afV~F~~~e~A~~ 61 (207)
|.+-.|.+++++++++++. .+.-.|+.+.+-.+ .+ -+ .+++|+|.++.+.
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 3344677777766654444 34556778877665 11 23 4568999887654
No 285
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=39.20 E-value=36 Score=28.97 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=39.8
Q ss_pred EEEEcCCCcC----CcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q psy2347 11 RVYVGGLTET----VKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMG 73 (207)
Q Consensus 11 ~lfV~nLp~~----~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g 73 (207)
--+|+||..- .....+.++.++||+|..+.+.. .-+|...+++.|+.++.+ +...+..
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~----~~~vvv~~p~~~k~il~~-~~~~f~~ 77 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT----KTTVIVGHHQLAKEVLIK-KGKDFSG 77 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT----EEEEEECSHHHHHHHHTT-TTTTTBB
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC----CCEEEECCHHHHHHHHHh-CcHhhCC
Confidence 3467877532 22467788888999998887642 456778899999999865 3344433
No 286
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=38.55 E-value=71 Score=21.87 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCeeEEEEeeC-CC--cEEEEEEcC
Q psy2347 24 EDLELEFEKFGKLNSVWVAFN-PP--GFAFVEFSN 55 (207)
Q Consensus 24 ~~L~~~F~~~G~V~~v~i~~d-~r--G~afV~F~~ 55 (207)
.+|.+.+...| |.+..|..+ .+ -|++++.++
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 46777888887 666666655 33 689999988
No 287
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=38.43 E-value=32 Score=27.00 Aligned_cols=42 Identities=5% Similarity=0.106 Sum_probs=30.7
Q ss_pred cCCcHHHHHHHHHhCCC----eeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcC
Q psy2347 19 ETVKKEDLELEFEKFGK----LNSVWVAFNPPGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 19 ~~~te~~L~~~F~~~G~----V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~ 67 (207)
..+|+++|+++|.+.-. ...+ .+..|.|.+++.|+++++.|.
T Consensus 89 ~~vtd~ei~~~Y~~~~~~f~~~~~~-------~~~~I~~~~~~~A~~~~~~l~ 134 (252)
T 3rfw_A 89 IKIDAAKVKAFYDQNKDKYVKPARV-------QAKHILVATEKEAKDIINELK 134 (252)
T ss_dssp CCCCHHHHHHHHHHHGGGSEECCEE-------EEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhHHhccccceE-------EEEEEEeCCHHHHHHHHHHHH
Confidence 36899999999986422 1122 245678889999999988876
No 288
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=38.05 E-value=41 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=27.1
Q ss_pred eeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCc
Q psy2347 36 LNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69 (207)
Q Consensus 36 V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~ 69 (207)
|.+|.++...++|.||+++..+++..+++.+.+.
T Consensus 33 i~~v~vp~~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecCCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 6677666557899999999999988888876654
No 289
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=37.53 E-value=65 Score=19.16 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=36.3
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc-CHHHHHHHHHh
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS-NQIDAEAACDS 65 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~-~~e~A~~Al~~ 65 (207)
.+|.| ++.-..=...|++.+.+.-.| .+.+... ..-+.|++. +.++..++|+.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~-~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLP-NKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETT-TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcC-CCEEEEEecCCHHHHHHHHHH
Confidence 35667 776544456788888877677 7777665 456777775 66777777775
No 290
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=36.60 E-value=1.3e+02 Score=22.26 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=40.6
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc----CHHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS----NQIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~----~~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+ +.++..++|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLA-EGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETT-TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEcc-CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45777777665556778888888888888887665 568889986 355666777654
No 291
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=35.62 E-value=88 Score=20.14 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=33.7
Q ss_pred cHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHH
Q psy2347 22 KKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAAC 63 (207)
Q Consensus 22 te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al 63 (207)
+.+++.+.+.++-+|.+|..+.- ..-.+.|.+.|.++.++.+
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vtG~~D~ll~v~~~d~~~l~~~l 56 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDDVV 56 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHHHC
T ss_pred CHHHHHHHHhcCCCeEEEEEeecCCCEEEEEEECCHHHHHHHH
Confidence 45788888899999999988765 3446778899999888876
No 292
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=35.54 E-value=39 Score=28.53 Aligned_cols=22 Identities=9% Similarity=-0.120 Sum_probs=19.4
Q ss_pred EEEEcCCCcCCcHHHHHHHHHh
Q psy2347 11 RVYVGGLTETVKKEDLELEFEK 32 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~ 32 (207)
.+.|+|||..++...|.++++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999998874
No 293
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=35.48 E-value=1.1e+02 Score=21.00 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=39.9
Q ss_pred CcEEEEcCCCcCCcHHH--HHHHH----Hh-CC--------CeeEEEEeeC-------CCcEEEEEEcCHH---HHHHHH
Q psy2347 9 GTRVYVGGLTETVKKED--LELEF----EK-FG--------KLNSVWVAFN-------PPGFAFVEFSNQI---DAEAAC 63 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~--L~~~F----~~-~G--------~V~~v~i~~d-------~rG~afV~F~~~e---~A~~Al 63 (207)
.+.|.|-+||+...+.. ++.+| .. |- .|+++.-... ..-.-.|.|.... ...+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 46889999998633222 33333 22 21 2444433222 2246777887654 444444
Q ss_pred HhcCCceeCCcEEEEE
Q psy2347 64 DSMNDQDLMGSKLRVE 79 (207)
Q Consensus 64 ~~l~g~~i~g~~l~V~ 79 (207)
.........+++|.+.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 4445677889988875
No 294
>2llz_A Uncharacterized protein YJDK; RNAse, biofilm, unknown function; NMR {Escherichia coli}
Probab=35.39 E-value=1.1e+02 Score=21.00 Aligned_cols=73 Identities=12% Similarity=-0.077 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCcCCcH-HHHHHHHHhCCCeeEEEE----eeC--CCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEE
Q psy2347 8 RGTRVYVGGLTETVKK-EDLELEFEKFGKLNSVWV----AFN--PPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te-~~L~~~F~~~G~V~~v~i----~~d--~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~ 80 (207)
+...|-|.-.+...++ .+|..+|..-+-...+.= +.+ ...|++|+=-+++++++.+..| ....-++...|.+
T Consensus 10 ~~YVVTf~y~e~~Lt~~~eL~~~lt~aGF~ttl~D~~G~pHeLgtNsFgliS~l~~~ev~~La~~L-~e~Alg~~pev~v 88 (100)
T 2llz_A 10 NTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLK-CLDLPDIDFDLNI 88 (100)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHHHTTEESEEECSSSCEEECTTTEEEECCCSCHHHHHHHHHHG-GGTSSCCCCEEEE
T ss_pred eEEEEEEEecccchHHHHHHHHHHHhCCceeEeecCCCCceeccccceeeeccCCHHHHHHHHHHH-HHhhcCCCCceeE
Confidence 3444555444444443 678888888775554321 111 5679999999999988877765 4445556656655
Q ss_pred e
Q psy2347 81 S 81 (207)
Q Consensus 81 a 81 (207)
.
T Consensus 89 ~ 89 (100)
T 2llz_A 89 M 89 (100)
T ss_dssp E
T ss_pred e
Confidence 4
No 295
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=35.01 E-value=63 Score=24.45 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=28.4
Q ss_pred cHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHh
Q psy2347 22 KKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 22 te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~ 65 (207)
.-++|+++|+.|=..+ ..|.+.+..|.+.+.|.+.|++
T Consensus 131 ~l~~i~~fF~~YK~le------~gK~v~v~gw~~~~~A~~~I~~ 168 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE------KGKWVKVTGWGDKVKAETLIKE 168 (173)
T ss_dssp HHHHHHHHHHHTTTTS------TTCCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc------CCCcEEEccCcCHHHHHHHHHH
Confidence 3478889999995443 1245777889999999998875
No 296
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=34.81 E-value=42 Score=22.55 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=36.1
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEE---E--EeeC-CCcEEEEEEc--CHHHHHHHHHhcCC
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSV---W--VAFN-PPGFAFVEFS--NQIDAEAACDSMND 68 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v---~--i~~d-~rG~afV~F~--~~e~A~~Al~~l~g 68 (207)
.|-|.-....+++..|.++..+|+...+| . .+.+ +-+.-+|++. +.+++++|++.|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 44444334566777888888888753332 2 2222 4577788887 46778888877643
No 297
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=34.64 E-value=88 Score=19.86 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=40.0
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcC----HHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSN----QIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~----~e~A~~Al~~l 66 (207)
.+|.|.++.-..-...|++.+...-.|..+.+... ...+.|+|+. .+...++|+.+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVP-SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETT-TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEcc-CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45778888766666778888888877888877655 5678888863 45556666653
No 298
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=34.60 E-value=1.2e+02 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=17.2
Q ss_pred CcEEEEEEcCHHHHHHHHHhcCCcee
Q psy2347 46 PGFAFVEFSNQIDAEAACDSMNDQDL 71 (207)
Q Consensus 46 rG~afV~F~~~e~A~~Al~~l~g~~i 71 (207)
+..+.|++++.+.|.++|++ .+.++
T Consensus 111 ~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 111 VANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred cEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 44566788888888888876 44443
No 299
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=34.54 E-value=26 Score=24.16 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=20.6
Q ss_pred CCeeEEEEeeC-CCcEEEEEEc-CHHHHHHHHHhcC
Q psy2347 34 GKLNSVWVAFN-PPGFAFVEFS-NQIDAEAACDSMN 67 (207)
Q Consensus 34 G~V~~v~i~~d-~rG~afV~F~-~~e~A~~Al~~l~ 67 (207)
-.|++|+|..| +...+||++- +.++.+++++.|+
T Consensus 36 vtVt~V~vs~Dl~~AkVyvs~~g~~~~~~~~~~~L~ 71 (106)
T 2kzf_A 36 VTFSRVELSKDKRYADVYVSFLGTPEERKETVEILN 71 (106)
T ss_dssp CCEEEEEECTTSCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCEEEEEEEeCCChhhHHHHHHHHH
Confidence 36778888888 3345566554 3555555555544
No 300
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=34.30 E-value=29 Score=27.53 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=24.0
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEe
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVA 42 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~ 42 (207)
..+.|+|||+.++...|.++++..-.+..+.+|
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 357899999999999998888754344444433
No 301
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=34.07 E-value=76 Score=18.91 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHh
Q psy2347 21 VKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 21 ~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~ 65 (207)
+|+++.++....| ++-.|-.|.+.++|++.|+.
T Consensus 18 ~sW~ec~~qV~g~------------~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 18 LTWNECRAQVDRF------------PAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp SSHHHHHHHHTTC------------TTCEEEEESSHHHHHHHHHC
T ss_pred CCHHHHHHHhcCC------------CCCccCCCCCHHHHHHHHHh
Confidence 4566666655444 45677899999999999864
No 302
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=32.93 E-value=1.1e+02 Score=20.30 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=16.8
Q ss_pred CcEEEEEEcCHHHHHHHHHh
Q psy2347 46 PGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 46 rG~afV~F~~~e~A~~Al~~ 65 (207)
.....|+|.|.++|+++.+.
T Consensus 53 ~~~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 53 KAQVILEFPSREDAYNWYHS 72 (94)
T ss_dssp SEEEEEEESSHHHHHHHHHS
T ss_pred CeEEEEECCCHHHHHHHHCC
Confidence 45789999999999988763
No 303
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=32.49 E-value=31 Score=27.29 Aligned_cols=33 Identities=15% Similarity=-0.049 Sum_probs=24.8
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEe
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVA 42 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~ 42 (207)
..+.|.|||..++...|.++++..-.+..+.+|
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 357899999999999999999865445444443
No 304
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=32.08 E-value=18 Score=28.85 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=25.4
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEee
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAF 43 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~ 43 (207)
-..|+|||..++.+.|.++++....+..+.+|.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 347899999999999999998765565554443
No 305
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=32.07 E-value=1.3e+02 Score=21.16 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=38.2
Q ss_pred CCCcCCcHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcC
Q psy2347 16 GLTETVKKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 16 nLp~~~te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~ 67 (207)
.++. ...+++.+.+.++-+|..|..+.- ..-++.|.+.+.++.++.++.|.
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~~~~l~ 125 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIG 125 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEecCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 3443 345788888999999999988754 34567789999999988876554
No 306
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=31.73 E-value=1.3e+02 Score=21.03 Aligned_cols=48 Identities=4% Similarity=0.068 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHH-HhcCC
Q psy2347 21 VKKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAAC-DSMND 68 (207)
Q Consensus 21 ~te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al-~~l~g 68 (207)
...+++.+.+.++-+|..|..+.- ..-++.|...+.++.++.+ +.+..
T Consensus 76 ~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~l~~~l~~ 125 (150)
T 2pn6_A 76 NYHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMS 125 (150)
T ss_dssp THHHHHHHHHHTSTTEEEEEECSSSCSEEEEEEESSHHHHHHHTHHHHTT
T ss_pred hHHHHHHHHHhcCchhhhhhhhcCcCCEEEEEEECCHHHHHHHHHHHhcc
Confidence 445778888999999999987764 3456788999999998888 55543
No 307
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=31.14 E-value=41 Score=23.97 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=19.9
Q ss_pred CeeEEEEeeC-CCcEEEEEEcC---HHHHHHHHHhcC
Q psy2347 35 KLNSVWVAFN-PPGFAFVEFSN---QIDAEAACDSMN 67 (207)
Q Consensus 35 ~V~~v~i~~d-~rG~afV~F~~---~e~A~~Al~~l~ 67 (207)
.|+.|+|..| +...+||++-. .++.+.+++.|+
T Consensus 36 tVt~V~vS~Dl~~AkVyvs~~g~~~~~~~~~~~~~L~ 72 (128)
T 1jos_A 36 TVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLE 72 (128)
T ss_dssp EEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHH
T ss_pred EEeEEEECCCCCEEEEEEEeCCCCchhhHHHHHHHHH
Confidence 4677888777 44556777653 555555554444
No 308
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=30.85 E-value=81 Score=23.83 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=28.5
Q ss_pred cHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhc
Q psy2347 22 KKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM 66 (207)
Q Consensus 22 te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l 66 (207)
.-++|+++|+.|=..+ ..|.+.+-.|.+.+.|.+.|++.
T Consensus 127 ~l~~i~~fF~~YK~le------~gK~v~~~gw~~~~~A~~~I~~~ 165 (173)
T 1qez_A 127 TKNKIVHFFEHYKELE------PGKYVKISGWGSATEAKNRIQLA 165 (173)
T ss_dssp HHHHHHHHHHHTTTTS------TTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc------CCCceEEccccCHHHHHHHHHHH
Confidence 3467888999995443 12456777899999999888753
No 309
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=30.32 E-value=1.5e+02 Score=21.92 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=23.4
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCC
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGK 35 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 35 (207)
.++.+.|.|+.-.+--|-|||.+.+..--+
T Consensus 12 ~Pe~~NvI~GqsHFIKTvEDl~Ealv~svP 41 (162)
T 2ekm_A 12 IPEGTNVIIGQSHFIKTVEDLYETLASSSP 41 (162)
T ss_dssp CCTTEEEEEEECCSTTHHHHHHHHHHTTCS
T ss_pred CCCCceEEEeeccccccHHHHHHHHhhcCC
Confidence 466778888888887888999988876544
No 310
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.21 E-value=48 Score=23.31 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCee
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLN 37 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~ 37 (207)
...+|+|.++. ..+.++|++++..+|-..
T Consensus 24 ~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v 52 (129)
T 2d8m_A 24 QGVVVVLSGFQ-NPFRSELRDKALELGAKY 52 (129)
T ss_dssp TTEEEEEESCC-TTHHHHHHHHHHHTTEEE
T ss_pred CCeEEEEeCCC-cHHHHHHHHHHHHcCCEE
Confidence 46788888876 567899999999998643
No 311
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=30.14 E-value=69 Score=25.72 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=29.2
Q ss_pred CCcCCcHHHHHHHHHhCCCeeEEEEeeC-----------CCcEEEEEEcCHHHHHHHHH
Q psy2347 17 LTETVKKEDLELEFEKFGKLNSVWVAFN-----------PPGFAFVEFSNQIDAEAACD 64 (207)
Q Consensus 17 Lp~~~te~~L~~~F~~~G~V~~v~i~~d-----------~rG~afV~F~~~e~A~~Al~ 64 (207)
||..++++||+.+-.....-..|.++.+ .--+|+|.-+-.+++.++++
T Consensus 75 vp~~~~d~El~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~ 133 (248)
T 4a18_J 75 VPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIA 133 (248)
T ss_dssp ECTTCCHHHHHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHH
T ss_pred eCCcCCHHHHHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHH
Confidence 4888999999877544432233333333 45688887775455555444
No 312
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=29.81 E-value=1.6e+02 Score=21.91 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=23.2
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhCCC
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKFGK 35 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 35 (207)
.++.+.|.|+.-.+--|-|||.+.+..--+
T Consensus 15 ~Pe~~NvI~GqsHFIKTVEDl~Ealv~svP 44 (167)
T 1wvq_A 15 IPQGTNVIIGQAHFIKTVEDLYEALVTSVP 44 (167)
T ss_dssp CCTTCEEEEEECCSTTHHHHHHHHHHTTCT
T ss_pred CCCCceEEEeeccccccHHHHHHHHhhcCC
Confidence 456778888888887888999988865544
No 313
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=29.58 E-value=34 Score=17.26 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=10.9
Q ss_pred CcHHHHHHHHHhC
Q psy2347 21 VKKEDLELEFEKF 33 (207)
Q Consensus 21 ~te~~L~~~F~~~ 33 (207)
-+|.+|+++.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 3689999999887
No 314
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=29.48 E-value=78 Score=17.67 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=34.2
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEc-CHHHHHHHHHhc
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFS-NQIDAEAACDSM 66 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~-~~e~A~~Al~~l 66 (207)
++.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+.. +.++..++++.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~i~~~i~~~ 59 (64)
T 2xmm_A 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLT-SKKVTITSALGEEQLRTAIASA 59 (64)
T ss_dssp EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTT-TCEEEEECSSCHHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEec-CCEEEEEecCCHHHHHHHHHHc
Confidence 4666666544445667777777766777776554 456666643 455666666653
No 315
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=29.39 E-value=56 Score=22.46 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=24.9
Q ss_pred cCCcHHHHHHHHHh-CCC---eeEE-EEeeC-----CCcEEEEEEcCHHHHHHHH
Q psy2347 19 ETVKKEDLELEFEK-FGK---LNSV-WVAFN-----PPGFAFVEFSNQIDAEAAC 63 (207)
Q Consensus 19 ~~~te~~L~~~F~~-~G~---V~~v-~i~~d-----~rG~afV~F~~~e~A~~Al 63 (207)
...+..+|++.+.+ |.. ++.| .+.+. +.+||. .|+|.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~-IYds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAK-LYEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEE-ECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEE-EECCHHHHHhhC
Confidence 45677888877765 443 2222 22222 556665 477777766553
No 316
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=29.29 E-value=87 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=16.2
Q ss_pred EEEEEcCHHHHHHHHHhcCCc
Q psy2347 49 AFVEFSNQIDAEAACDSMNDQ 69 (207)
Q Consensus 49 afV~F~~~e~A~~Al~~l~g~ 69 (207)
.-+.|+++|+|.+-+++ |+.
T Consensus 62 v~L~F~skE~AiayAek-~G~ 81 (108)
T 2lju_A 62 VCLSFTTRELAIAYAVA-HKI 81 (108)
T ss_dssp SCEEESSHHHHHHHHHH-TTC
T ss_pred ceEecCCHHHHHHHHHH-cCC
Confidence 35899999999998887 543
No 317
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=29.29 E-value=1.4e+02 Score=21.89 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=37.5
Q ss_pred CCCcCCcHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhc
Q psy2347 16 GLTETVKKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSM 66 (207)
Q Consensus 16 nLp~~~te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l 66 (207)
.+++ ...+++.+.+.++-+|..|..+.- ..-++.|.+.+.++.++.++.|
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEeeCCCCEEEEEEECCHHHHHHHHHHH
Confidence 3443 345778888999999999988754 3456778999999988887554
No 318
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=29.29 E-value=2.1e+02 Score=22.62 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=42.7
Q ss_pred CCcEEEEcCCCcCCc--HHHHHHHHHh-----CCC--------eeEEEEeeC-------CCcEEEEEEcCHH---HHHHH
Q psy2347 8 RGTRVYVGGLTETVK--KEDLELEFEK-----FGK--------LNSVWVAFN-------PPGFAFVEFSNQI---DAEAA 62 (207)
Q Consensus 8 ~~~~lfV~nLp~~~t--e~~L~~~F~~-----~G~--------V~~v~i~~d-------~rG~afV~F~~~e---~A~~A 62 (207)
..+.|.|-+||+... +..+..+|.. |-. |.++.-... ..-.-.|.|.... ...+|
T Consensus 51 Rr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILka 130 (233)
T 2yko_A 51 KRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRA 130 (233)
T ss_dssp TTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHH
T ss_pred cccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHH
Confidence 457899999999765 4444444432 432 233321111 2235677777554 44455
Q ss_pred HHhcCCceeCCcEEEEEEe
Q psy2347 63 CDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 63 l~~l~g~~i~g~~l~V~~a 81 (207)
..........+.+|++...
T Consensus 131 aR~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 131 AREKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HHTTSCEEETTEEEEEEEC
T ss_pred HHHhcccccCCCceEEeCC
Confidence 5554567789999887654
No 319
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=29.16 E-value=27 Score=30.64 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCcCCcHHHHHHHHH----hCCCeeEEEEeeC--C--CcEEEEEEcCHHHHHHHHHhc
Q psy2347 17 LTETVKKEDLELEFE----KFGKLNSVWVAFN--P--PGFAFVEFSNQIDAEAACDSM 66 (207)
Q Consensus 17 Lp~~~te~~L~~~F~----~~G~V~~v~i~~d--~--rG~afV~F~~~e~A~~Al~~l 66 (207)
++.+.+..+|+.+|. .++.|+++.+... + +..+++.|.+.++|.+++..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 334444456776664 3567888766543 2 346788999999998888765
No 320
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=28.58 E-value=60 Score=24.57 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=28.3
Q ss_pred cHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhc
Q psy2347 22 KKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM 66 (207)
Q Consensus 22 te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l 66 (207)
.-++|+++|+.|=..+. +..|.+.+..|.+.+.|.+.|++.
T Consensus 128 ~l~~i~~fF~~YK~le~----k~gK~v~~~gw~~~~~A~~~I~~~ 168 (174)
T 2prd_A 128 VKQEIQHFFETYKALEA----KKGKWVKVTGWRDRKAALEEVRAC 168 (174)
T ss_dssp HHHHHHHHHHHTTGGGG----GGTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccc----cCCCceEECcccCHHHHHHHHHHH
Confidence 34678889999954330 012456777899999999988753
No 321
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=28.36 E-value=43 Score=25.35 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=26.7
Q ss_pred cHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhc
Q psy2347 22 KKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM 66 (207)
Q Consensus 22 te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l 66 (207)
.-++|+.+|+.|=.++. .|..-.-.|.+.+.|.+.|++.
T Consensus 125 ~l~~I~~fF~~YK~le~------gK~v~v~gw~~~~~A~~~I~~~ 163 (172)
T 1sxv_A 125 ELDAIKHFFVHYKDLEP------GKFVKAADWVDRAEAEAEVQRS 163 (172)
T ss_dssp HHHHHHHHHHHTTTTST------TCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCC------CCeEEeCCCCCHHHHHHHHHHH
Confidence 44788899999954431 2333345789999999888753
No 322
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=27.97 E-value=1.1e+02 Score=25.68 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHh
Q psy2347 23 KEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 23 e~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~ 65 (207)
...|.++.++||+|..+.+.. .-.|.+.+++.++.++..
T Consensus 35 ~~~~~~l~~kYG~i~~~~~g~----~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKLGN----VESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEETT----EEEEEECCHHHHHHHHHT
T ss_pred hHHHHHHHHHcCceeeccCCC----CCEEEEcCHHHHHHHHHh
Confidence 356778889999999887632 346888999999998864
No 323
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.76 E-value=76 Score=20.57 Aligned_cols=43 Identities=7% Similarity=-0.023 Sum_probs=26.1
Q ss_pred cHHHHHHHHHhCCCeeEEEEeeC--CCcEEEEEEcCHHHHHHHHHhc
Q psy2347 22 KKEDLELEFEKFGKLNSVWVAFN--PPGFAFVEFSNQIDAEAACDSM 66 (207)
Q Consensus 22 te~~L~~~F~~~G~V~~v~i~~d--~rG~afV~F~~~e~A~~Al~~l 66 (207)
+.+++.+++.+++--.-|+.... .++..+ .+++++++++++.+
T Consensus 33 ~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~--v~~~~el~~~~~~~ 77 (108)
T 2cqy_A 33 DAEEAVRIAREIGYPVMIKASAGGGGKGMRI--AWDDEETRDGFRLS 77 (108)
T ss_dssp SHHHHHHHHHHHCSSEEEEETTSCCTTTCEE--ESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEECCCCCCccEEE--eCCHHHHHHHHHHH
Confidence 56777777776654333333333 444443 57888888888754
No 324
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=27.75 E-value=21 Score=31.57 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=26.1
Q ss_pred HHHHHHH--hCCCeeEEEEeeC--CC--cEEEEEEcCHHHHHHHH
Q psy2347 25 DLELEFE--KFGKLNSVWVAFN--PP--GFAFVEFSNQIDAEAAC 63 (207)
Q Consensus 25 ~L~~~F~--~~G~V~~v~i~~d--~r--G~afV~F~~~e~A~~Al 63 (207)
+|+.+|. .++.|+++.+... ++ ..+++.|.+.++|.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 4566773 5888998876544 33 35688999877765544
No 325
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=27.29 E-value=1.3e+02 Score=20.23 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=30.5
Q ss_pred CCcCCcHHHHHHHHHhCCCeeEEEEeeCC--------------CcEEEEEEcCHHHHHHHHHh
Q psy2347 17 LTETVKKEDLELEFEKFGKLNSVWVAFNP--------------PGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 17 Lp~~~te~~L~~~F~~~G~V~~v~i~~d~--------------rG~afV~F~~~e~A~~Al~~ 65 (207)
-+.++|+.+++.-+-.-|.|++|.|+.+. ..+-.+++-+.+..++-|++
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~nk~~v~V~l~~~a~~~~~~~~~f~IGSvd~FE~~Le~ 76 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLET 76 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEETTTEEEEEECTTTSCSTTCCEEEECSCHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEEcCCEEEEEEcCCCcCCCCceEEEEeCCHHHHHHHHHH
Confidence 35578999998555566788888776431 11234555677766655544
No 326
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=27.07 E-value=1.8e+02 Score=20.93 Aligned_cols=50 Identities=6% Similarity=-0.066 Sum_probs=37.1
Q ss_pred CCCcCC--cHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHh
Q psy2347 16 GLTETV--KKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 16 nLp~~~--te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~ 65 (207)
.++... ..+++.+.+.++-+|..|..+.- ..-.+.|.+.+.++.++.+..
T Consensus 70 ~v~~~~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~l~v~~~d~~~l~~~l~~ 122 (162)
T 3i4p_A 70 RTASHSIEWLKRFSEVVSEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKR 122 (162)
T ss_dssp ECCSCCHHHHHHHHHHHHHCTTEEEEEECCSSCSEEEEEEESSHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHHHhcCCCEEEeeecCCCCCEEEEEEECCHHHHHHHHHH
Confidence 455443 24677788889999999988765 345678899999998887764
No 327
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=26.87 E-value=82 Score=22.85 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=24.6
Q ss_pred cCCcHHHHHHHHHh-CCCe---eEE-EEeeC-----CCcEEEEEEcCHHHHHH
Q psy2347 19 ETVKKEDLELEFEK-FGKL---NSV-WVAFN-----PPGFAFVEFSNQIDAEA 61 (207)
Q Consensus 19 ~~~te~~L~~~F~~-~G~V---~~v-~i~~d-----~rG~afV~F~~~e~A~~ 61 (207)
..++..||++.+.+ |..- +.| .|.+. +.+||. .|+|.|.|++
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~-IYds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGL-VYNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEE-EESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEE-EeCCHHHHHh
Confidence 45788999988865 4432 222 22222 456665 4778777765
No 328
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=26.45 E-value=79 Score=26.42 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=33.7
Q ss_pred EEcCCCc---CCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHh
Q psy2347 13 YVGGLTE---TVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 13 fV~nLp~---~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~ 65 (207)
+|+||.. .-....+.++.++||+|..+.+.. .-+|...+++.+++++.+
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~----~~~vvv~~p~~i~~vl~~ 71 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW----TPVVVLNGLAAVREALVT 71 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT----EEEEEEEHHHHHHHHHTT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC----eeEEEECCHHHHHHHHHh
Confidence 4666543 233456788889999998887642 335666788888888753
No 329
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.45 E-value=1.7e+02 Score=20.52 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=34.5
Q ss_pred cHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEE-cCHHHHHHHH-HhcC
Q psy2347 22 KKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEF-SNQIDAEAAC-DSMN 67 (207)
Q Consensus 22 te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F-~~~e~A~~Al-~~l~ 67 (207)
..+++.+.+.++-+|.+|..+.- ..-++.|.+ .+.++.++.+ +.|.
T Consensus 81 ~~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~~d~~~l~~~~~~~l~ 129 (151)
T 2dbb_A 81 DADKVISEISDIEYVKSVEKGVGRYNIIVRLLLPKDIKDAENLISEFLQ 129 (151)
T ss_dssp HHHHHHHHHTTCTTEEEEEEEESSCSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCeEEEeEecCCCCEEEEEEEcCCHHHHHHHHHHHhh
Confidence 34577788888889999988765 344678888 9999988877 4443
No 330
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=26.32 E-value=1.1e+02 Score=18.22 Aligned_cols=55 Identities=7% Similarity=-0.068 Sum_probs=38.3
Q ss_pred cEEEEcCCCcCCcHHHHHHHHHhCC-CeeEEEEeeCCCcEEEEEEc-CHHHHHHHHHhc
Q psy2347 10 TRVYVGGLTETVKKEDLELEFEKFG-KLNSVWVAFNPPGFAFVEFS-NQIDAEAACDSM 66 (207)
Q Consensus 10 ~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d~rG~afV~F~-~~e~A~~Al~~l 66 (207)
.++.|. +.-..-...|++.+.+.- .|..+.+... ...+.|++. +.++..++++.+
T Consensus 7 ~~~~v~-m~C~~C~~~ie~~l~~~~~GV~~~~v~~~-~~~~~v~~~~~~~~i~~~i~~~ 63 (73)
T 1cc8_A 7 YQFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLE-KQLVDVYTTLPYDFILEKIKKT 63 (73)
T ss_dssp EEEEEC-CCSHHHHHHHHHHHHTTTTSEEEEEEETT-TTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEEe-eECHHHHHHHHHHHHhCCCCceEEEEECC-CCEEEEEEeCCHHHHHHHHHHh
Confidence 356665 554444577889999987 8888888765 557777775 566777777753
No 331
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=26.23 E-value=54 Score=22.60 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=23.7
Q ss_pred cCCcHHHHHHHHHh-CCC---eeEE-EEeeC-----CCcEEEEEEcCHHHHHH
Q psy2347 19 ETVKKEDLELEFEK-FGK---LNSV-WVAFN-----PPGFAFVEFSNQIDAEA 61 (207)
Q Consensus 19 ~~~te~~L~~~F~~-~G~---V~~v-~i~~d-----~rG~afV~F~~~e~A~~ 61 (207)
...+..+|++.+.+ |.. ++.| .+.+. +.+||. .|+|.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~-IYds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAK-IYNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEE-ECSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEE-EECCHHHHHh
Confidence 45677888876665 332 2222 22222 556775 4777777664
No 332
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=25.74 E-value=1.5e+02 Score=20.39 Aligned_cols=46 Identities=7% Similarity=0.101 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHH-HhcC
Q psy2347 22 KKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAAC-DSMN 67 (207)
Q Consensus 22 te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al-~~l~ 67 (207)
..+++.+.+.++.+|..|..+.- ..-++.|...+.++.++.+ +.+.
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~~G~~d~~~~v~~~d~~~l~~~~~~~l~ 123 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIG 123 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEecCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 45677788888999999876644 3346778999999999888 5554
No 333
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=25.71 E-value=1e+02 Score=20.48 Aligned_cols=58 Identities=21% Similarity=0.071 Sum_probs=36.1
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEE---E--EeeC-CCcEEEEEEc-CHHHHHHHHHhcCC
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSV---W--VAFN-PPGFAFVEFS-NQIDAEAACDSMND 68 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v---~--i~~d-~rG~afV~F~-~~e~A~~Al~~l~g 68 (207)
.|-|.-....+++..|.++..+|+.-.+| . .+.+ +-+.-+|++. +.++.++|++.|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 89 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 45555445567778888899999763332 2 2222 4467778876 45567777776643
No 334
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=25.43 E-value=82 Score=20.91 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCeeEEEEeeC----------CCcEEEEEEcC-------------HHHHHHHHHhcCC
Q psy2347 25 DLELEFEKFGKLNSVWVAFN----------PPGFAFVEFSN-------------QIDAEAACDSMND 68 (207)
Q Consensus 25 ~L~~~F~~~G~V~~v~i~~d----------~rG~afV~F~~-------------~e~A~~Al~~l~g 68 (207)
.|.++.++|-...-..+... .+-.++|+|.+ .|+.+++|+.|..
T Consensus 5 nit~lc~ey~ntqiy~ln~~i~syteslagkremviisf~ngatfqvevpgsqh~~sqk~~~ermkd 71 (104)
T 3chb_D 5 NITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQKKAIERMKD 71 (104)
T ss_dssp SHHHHHTTSTTEEEEEEEECCSEEEEECSTTCCEEEEECTTCCEEEECCCCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHhhcceeeehhHHHHHHHHhhcCceeEEEEEecCCcEEEEecCcchhhhhhhhHHHHHHH
Confidence 35567777765332222222 67788888865 4667777776543
No 335
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=24.99 E-value=1e+02 Score=23.36 Aligned_cols=48 Identities=4% Similarity=-0.162 Sum_probs=29.8
Q ss_pred CcEEEEcCCCcCCcHHHHHH--------HHHhCCCeeEEEEeeC--CCcEEEEEEcCH
Q psy2347 9 GTRVYVGGLTETVKKEDLEL--------EFEKFGKLNSVWVAFN--PPGFAFVEFSNQ 56 (207)
Q Consensus 9 ~~~lfV~nLp~~~te~~L~~--------~F~~~G~V~~v~i~~d--~rG~afV~F~~~ 56 (207)
..+=|+-.||.+++.++-++ +|..++-|.++-|..+ ....|.|.|.+.
T Consensus 70 lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 70 LFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 34455667999988765443 3445566777777653 345677777653
No 336
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.54 E-value=24 Score=26.75 Aligned_cols=17 Identities=0% Similarity=0.083 Sum_probs=10.0
Q ss_pred cEEEEEEcCHHHHHHHH
Q psy2347 47 GFAFVEFSNQIDAEAAC 63 (207)
Q Consensus 47 G~afV~F~~~e~A~~Al 63 (207)
-|.+++|+...++.+.|
T Consensus 129 ~Yvlm~F~a~p~~I~EL 145 (168)
T 3bbn_F 129 IYLLFTYFTKPESISPL 145 (168)
T ss_dssp EEEEEEEEECTTSSHHH
T ss_pred EEEEEEEEeCHHHHHHH
Confidence 47788887544433333
No 337
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=24.35 E-value=88 Score=24.68 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=28.6
Q ss_pred CCcCCcHHHHHHHHHhCCCeeEEEEeeC-----------CCcEEEEEEcCHHHHHHHHHh
Q psy2347 17 LTETVKKEDLELEFEKFGKLNSVWVAFN-----------PPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 17 Lp~~~te~~L~~~F~~~G~V~~v~i~~d-----------~rG~afV~F~~~e~A~~Al~~ 65 (207)
||..++++||+.+=.....-..|.++.+ .--+|+|.-+-.++..++++.
T Consensus 72 vp~~~~d~El~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d 131 (224)
T 1g62_A 72 VPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISD 131 (224)
T ss_dssp EETTCCHHHHHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHH
Confidence 4788999999855443322123333333 446888888755555555543
No 338
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=24.31 E-value=47 Score=23.93 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=19.3
Q ss_pred EcCCCcCCcHHHHHHHHHh-CC--CeeEEEE
Q psy2347 14 VGGLTETVKKEDLELEFEK-FG--KLNSVWV 41 (207)
Q Consensus 14 V~nLp~~~te~~L~~~F~~-~G--~V~~v~i 41 (207)
|-.+..-++++++++++.+ +. +|.+|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~l 98 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHL 98 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEE
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEee
Confidence 5566778999999999964 43 3555443
No 339
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=24.24 E-value=28 Score=31.44 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=31.5
Q ss_pred CCcCCcHHHHHHHHH----hCCCeeEEEEeeC--C--CcEEEEEEcCHHHHHHHHHhcC
Q psy2347 17 LTETVKKEDLELEFE----KFGKLNSVWVAFN--P--PGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 17 Lp~~~te~~L~~~F~----~~G~V~~v~i~~d--~--rG~afV~F~~~e~A~~Al~~l~ 67 (207)
++.+.+..+|+.+|. .++.|+++.+... + ...+++.|.+.++|.+|+..+.
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 333344456777664 4567888766544 2 2467889999999988887653
No 340
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=24.09 E-value=1.6e+02 Score=19.56 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=32.0
Q ss_pred CcCCcHHHHHHHHHhCCCeeEEEEee-CCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEe
Q psy2347 18 TETVKKEDLELEFEKFGKLNSVWVAF-NPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81 (207)
Q Consensus 18 p~~~te~~L~~~F~~~G~V~~v~i~~-d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a 81 (207)
+..+|+++|..++...=.+..+.|.. |.-+- -|+..+..+.+.|++. ..-.+..|++.+.
T Consensus 25 ~~~~tweel~~mvk~~f~L~~~~ikY~DEenD-~v~i~Sq~E~eEAlkv---a~k~~n~L~m~v~ 85 (87)
T 2bkf_A 25 PENTTWADIEAMVKVSFDLNTIQIKYLDEENE-EVSINSQGEYEEALKM---AVKQGNQLQMQVH 85 (87)
T ss_dssp GGGCCHHHHHHHHHHHHTCSSEEEEEECTTSC-EEEECSHHHHHHHHHH---HHHTTTEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEEEcCCCC-EEEEecHHHHHHHHHH---hccCCCEEEEEEe
Confidence 45789999998886532333433321 21111 2555667777777763 1123445555543
No 341
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=23.87 E-value=1.9e+02 Score=20.24 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcC
Q psy2347 24 EDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 24 ~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~ 67 (207)
+++.+.+.++-+|..|..+.. ..-++.|..++.++.++.++.+.
T Consensus 82 ~~~~~~l~~~p~V~~~~~~~G~~d~~~~v~~~~~~~l~~~l~~l~ 126 (150)
T 2w25_A 82 DDAPARLEHIEEVESCYSVAGEASYVLLVRVASARALEDLLQRIR 126 (150)
T ss_dssp CCHHHHHTTCTTEEEEEEESSSCSEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCeEEEEEeECCCCEEEEEEECCHHHHHHHHHHHh
Confidence 677788888999999977764 34567788999999888876543
No 342
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=23.75 E-value=1.7e+02 Score=24.28 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=36.1
Q ss_pred EEcCCCc---CCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHh
Q psy2347 13 YVGGLTE---TVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 13 fV~nLp~---~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~ 65 (207)
+|+|+.. .-....+.++.++||+|..+.+. ..-+|...+++.+++++..
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG----SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET----TEEEEEECSHHHHHHHHHT
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEEC----CccEEEECCHHHHHHHHhc
Confidence 4566643 22356788889999999887763 2467888999999999875
No 343
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=23.75 E-value=59 Score=17.96 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=13.1
Q ss_pred CcCCcHHHHHHHHHhC
Q psy2347 18 TETVKKEDLELEFEKF 33 (207)
Q Consensus 18 p~~~te~~L~~~F~~~ 33 (207)
..++|.++|+++|.+.
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 3578999999999865
No 344
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=23.63 E-value=68 Score=21.41 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCCCcEEEEcCCCcCCcHHHHHHHHHhC
Q psy2347 6 MERGTRVYVGGLTETVKKEDLELEFEKF 33 (207)
Q Consensus 6 ~~~~~~lfV~nLp~~~te~~L~~~F~~~ 33 (207)
.+....|.|...+..++.++.++++.+|
T Consensus 16 lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 16 LNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 4456688998999999999999998888
No 345
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=23.52 E-value=17 Score=27.40 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCcEEEEEEcCHHHHHHHHHhcC
Q psy2347 45 PPGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 45 ~rG~afV~F~~~e~A~~Al~~l~ 67 (207)
..+|.||+++..+++...+..+.
T Consensus 65 fPGYvFV~~~~~~~~~~~vr~t~ 87 (181)
T 2jvv_A 65 FPGYVLVQMVMNDASWHLVRSVP 87 (181)
T ss_dssp -----------------------
T ss_pred CCCEEEEEEEcCcchhhhhhcCC
Confidence 46899999986655554554433
No 346
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=23.44 E-value=1.9e+02 Score=19.97 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=36.0
Q ss_pred CCCcCCcHHHHHHHHHhCCCeeEEEEeeC---------C-CcEEEEEEcCHHHHHHHHHh
Q psy2347 16 GLTETVKKEDLELEFEKFGKLNSVWVAFN---------P-PGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 16 nLp~~~te~~L~~~F~~~G~V~~v~i~~d---------~-rG~afV~F~~~e~A~~Al~~ 65 (207)
..+.+.+.+.|++.+...+-..-.++-.. . +.+-.+.|.++..+.++++.
T Consensus 12 ~~s~~e~~~~l~~al~~~Gf~v~~~~d~~~~~~~~G~~~~~~~~il~~cnp~~a~~~l~~ 71 (130)
T 1q9u_A 12 STGMNETIERLEESLKQEGFGVLWQFSVTEKLQEKGLDFSTPMVILEVCNPQEAARVLNE 71 (130)
T ss_dssp SSCHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHTTCCCCSCEEEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHh
Confidence 55666777889998888665433333221 2 57888999999999999985
No 347
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.21 E-value=58 Score=21.60 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=32.7
Q ss_pred EEcCCCcCCcHHHHHHHHHh-CC-CeeEEEEeeCCC--cEEEEEEcCHHHHHHHH
Q psy2347 13 YVGGLTETVKKEDLELEFEK-FG-KLNSVWVAFNPP--GFAFVEFSNQIDAEAAC 63 (207)
Q Consensus 13 fV~nLp~~~te~~L~~~F~~-~G-~V~~v~i~~d~r--G~afV~F~~~e~A~~Al 63 (207)
++-.++..++..+|++.+++ |. +|..|..+..++ --|+|++...++|....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 34446778899999988887 44 355555444322 35999998766544443
No 348
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=22.93 E-value=68 Score=21.54 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.7
Q ss_pred CcEEEEEEcCHHHHHHHHH
Q psy2347 46 PGFAFVEFSNQIDAEAACD 64 (207)
Q Consensus 46 rG~afV~F~~~e~A~~Al~ 64 (207)
.....|+|.|.++|+++.+
T Consensus 54 ~~~viieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 54 ARNVVIEFPSVQHAIDCYN 72 (99)
T ss_dssp SEEEEEEESSHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHc
Confidence 3577889999999988775
No 349
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=22.92 E-value=48 Score=24.52 Aligned_cols=42 Identities=29% Similarity=0.289 Sum_probs=24.1
Q ss_pred cCCcHHHHHHHHHh-CCC---eeEEEEeeC------CCcEEEEEEcCHHHHHH
Q psy2347 19 ETVKKEDLELEFEK-FGK---LNSVWVAFN------PPGFAFVEFSNQIDAEA 61 (207)
Q Consensus 19 ~~~te~~L~~~F~~-~G~---V~~v~i~~d------~rG~afV~F~~~e~A~~ 61 (207)
..++..||++.+.+ |.. ++.|.-+.. +.+||.| |+|.|.|++
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 35677888877765 433 222222222 5567764 778777765
No 350
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=22.36 E-value=1.3e+02 Score=22.79 Aligned_cols=57 Identities=7% Similarity=-0.084 Sum_probs=30.5
Q ss_pred EEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC-CCcEEEEEEcCHHHHHHHHHhcC
Q psy2347 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-PPGFAFVEFSNQIDAEAACDSMN 67 (207)
Q Consensus 11 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-~rG~afV~F~~~e~A~~Al~~l~ 67 (207)
-|.|..+.....++.|+++.+.-=+|+.+....+ ...+.+|.+++.+.+..|++.|-
T Consensus 62 gii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~ 119 (276)
T 3ksm_A 62 ALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALL 119 (276)
T ss_dssp EEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHH
Confidence 4555444444555666655443223332211111 22358899999888888777653
No 351
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=22.27 E-value=1.6e+02 Score=24.48 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHh
Q psy2347 23 KEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65 (207)
Q Consensus 23 e~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~ 65 (207)
...|.++.++||+|..+.+. ..-.|...+++.+++++..
T Consensus 51 ~~~~~~l~~~YG~i~~~~~g----~~~~vvv~dp~~~~~il~~ 89 (482)
T 3k9v_A 51 HDTLAEYHKKYGQIFRMKLG----SFDSVHLGSPSLLEALYRT 89 (482)
T ss_dssp HHHHHHHHHHHCSEEEEEET----TEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEccC----CCCEEEEcCHHHHHHHHHh
Confidence 45677888999999888763 2456778999999988875
No 352
>3enc_A Protein PCC1; dimerization domain, keops, telomere, unknown function; 2.63A {Pyrococcus furiosus} PDB: 3eno_C
Probab=22.20 E-value=94 Score=20.68 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=21.5
Q ss_pred EEEEcCHHHHHHHHHhcCC-------------ceeCCcEEEEEEee
Q psy2347 50 FVEFSNQIDAEAACDSMND-------------QDLMGSKLRVEISR 82 (207)
Q Consensus 50 fV~F~~~e~A~~Al~~l~g-------------~~i~g~~l~V~~a~ 82 (207)
-++|++++.|+.+.+++.- .++++.+|.|.+..
T Consensus 16 ~~e~~~~e~A~iVy~Sl~~E~~~~~~~RS~~~i~l~~~~l~i~i~A 61 (87)
T 3enc_A 16 EMEFPSEDVAKVVYEAVLYEHLSVPYRRSEIDFKLEGKKIILDIKA 61 (87)
T ss_dssp EEECSCHHHHHHHHHHHTHHHHTCCSCSSEECCEESSSEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHhCcccccCCCCCceEEEEEeCCEEEEEEEE
Confidence 4688898888877765421 13566777776643
No 353
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=22.10 E-value=1.6e+02 Score=21.86 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=21.9
Q ss_pred CCCCCcEEEEcCCCcCCcHHHHHHHHHh
Q psy2347 5 MMERGTRVYVGGLTETVKKEDLELEFEK 32 (207)
Q Consensus 5 ~~~~~~~lfV~nLp~~~te~~L~~~F~~ 32 (207)
..++.+.|.|+.-.+--|-|||.+.+..
T Consensus 9 e~Pe~~NvI~GqsHFIKTVEDl~Ealv~ 36 (161)
T 1vgg_A 9 EKPENLNVILGQAHFIKTVEDLHEALVT 36 (161)
T ss_dssp CCCTTCEEEEEECCSTTHHHHHHHHHHH
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhh
Confidence 3467778999888887888999887754
No 354
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=22.09 E-value=2.1e+02 Score=21.38 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCc---------CCcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhc
Q psy2347 8 RGTRVYVGGLTE---------TVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM 66 (207)
Q Consensus 8 ~~~~lfV~nLp~---------~~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l 66 (207)
....|.|.|..+ +.+.+.|+++|++.+--+ .+..| .+.++.+++|+.+
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V--~~~~d---------lt~~em~~~l~~f 99 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSV--DVKKN---------LTASDMTTELEAF 99 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEE--EEEES---------CCHHHHHHHHHHH
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEE--EEecC---------CCHHHHHHHHHHH
Confidence 445677777642 234567889999887533 33333 3567777777665
No 355
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=21.93 E-value=2e+02 Score=19.77 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=30.4
Q ss_pred EEEcCCCcCCcHHHH-------HHHHHh----CCCeeEEEEeeC---CCc---EEEEEEcCHHHHHHHH
Q psy2347 12 VYVGGLTETVKKEDL-------ELEFEK----FGKLNSVWVAFN---PPG---FAFVEFSNQIDAEAAC 63 (207)
Q Consensus 12 lfV~nLp~~~te~~L-------~~~F~~----~G~V~~v~i~~d---~rG---~afV~F~~~e~A~~Al 63 (207)
|.+-.|.+++++++. ++.|+. .-.|+.+.+-.+ ..+ ...++|+|.++.+.-+
T Consensus 24 IVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~~~~yd~~l~~~F~s~e~l~~Y~ 92 (118)
T 3fmb_A 24 IVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWNIALYSEFDNLDDVKFYA 92 (118)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCTTCCCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCCCCCceEEEEEEECCHHHHHHHh
Confidence 344467777776543 233432 344777777665 122 3457999988876533
No 356
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=21.85 E-value=1.7e+02 Score=19.42 Aligned_cols=40 Identities=8% Similarity=-0.081 Sum_probs=18.9
Q ss_pred CCCCCCCCCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEE
Q psy2347 1 MSDGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWV 41 (207)
Q Consensus 1 ms~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i 41 (207)
|+...+.+..+|.|-. +.....+.|+++++..+.+..|..
T Consensus 1 m~~~~~~~~~~iLivd-d~~~~~~~l~~~l~~~~~~~~v~~ 40 (146)
T 3ilh_A 1 MSLADTRKIDSVLLID-DDDIVNFLNTTIIRMTHRVEEIQS 40 (146)
T ss_dssp ------CCEEEEEEEC-SCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCccccCccceEEEEe-CCHHHHHHHHHHHHhcCCCeeeee
Confidence 4444444444555532 122345678888888776544443
No 357
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=1e+02 Score=19.48 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=9.4
Q ss_pred CCcEEEEEEcC
Q psy2347 45 PPGFAFVEFSN 55 (207)
Q Consensus 45 ~rG~afV~F~~ 55 (207)
.+..|+|.|+|
T Consensus 36 ~~~~ClV~FeD 46 (68)
T 2e5p_A 36 AREVCLVQFED 46 (68)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 47799999987
No 358
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=21.57 E-value=29 Score=23.79 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=21.5
Q ss_pred cCCcHHHHHHHHHh-CCCeeEEEEeeC---------CCcEEEEEEcCHHHHHHH
Q psy2347 19 ETVKKEDLELEFEK-FGKLNSVWVAFN---------PPGFAFVEFSNQIDAEAA 62 (207)
Q Consensus 19 ~~~te~~L~~~F~~-~G~V~~v~i~~d---------~rG~afV~F~~~e~A~~A 62 (207)
...+..+|++.+.+ |..-.++.++.. +.+||. .|+|.+.|++.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~-IYds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTK-IYADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEE-EESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEE-EECCHHHHHhh
Confidence 35677777766654 332222222222 456664 36665555543
No 359
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=21.34 E-value=2.3e+02 Score=22.79 Aligned_cols=51 Identities=6% Similarity=-0.160 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEE
Q psy2347 25 DLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLR 77 (207)
Q Consensus 25 ~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~ 77 (207)
+|++.+.+.+.+- +. +.-+=...|..|++++.|+++.+.|....+..+.+.
T Consensus 239 ~i~~~~~~~Ga~g-a~-mSGsGptvfal~~~~~~a~~~~~~l~~~g~~~~v~~ 289 (306)
T 3pyf_A 239 RALRAGVEAGALA-GI-VSGSGPTCAFLCTSASSAIDVGAQLSGAGVCRTVRV 289 (306)
T ss_dssp HHHHHHHHTTCSE-EE-ECTTSSEEEEEESSHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHHhcCCCE-EE-EcCcchhheEEeCCHHHHHHHHHHHHhcCCcceEEE
Confidence 4444455555321 21 222345778889998888888877764444444333
No 360
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=21.31 E-value=62 Score=21.26 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=16.6
Q ss_pred cCCCcCCcHHHHHHHHHhCC
Q psy2347 15 GGLTETVKKEDLELEFEKFG 34 (207)
Q Consensus 15 ~nLp~~~te~~L~~~F~~~G 34 (207)
+.|+..+||++|++++++.-
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 46788899999999998753
No 361
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.15 E-value=76 Score=21.83 Aligned_cols=60 Identities=18% Similarity=0.111 Sum_probs=32.2
Q ss_pred CcCCcHHHHHHHHHhCCCeeEE--EEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEEEee
Q psy2347 18 TETVKKEDLELEFEKFGKLNSV--WVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEISR 82 (207)
Q Consensus 18 p~~~te~~L~~~F~~~G~V~~v--~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~~a~ 82 (207)
+.++|+++|..++...=.+..+ +.+.+ -.- -|+..+..+.+.|++. ..-.+..|++.+.+
T Consensus 33 ~~~~tweel~~mvk~~f~L~~~~IkY~DE-enD-~V~i~Sq~E~eEAlkv---a~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 33 PENTTWADIEAMVKVSFDLNTIQIKYLDE-ENE-EVSINSQGEYEEALKM---AVKQGNQLQMQVHE 94 (101)
T ss_dssp TTTSCHHHHHHHHHHHHCCSSBCCEEECT-TSC-EECCCSHHHHHHHHHH---HHHHTSEEEEECCB
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEEecC-CCC-EEEEecHHHHHHHHHH---hccCCCEEEEEEee
Confidence 5588999999988652223332 22222 111 2455666677777653 11234556666654
No 362
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=20.91 E-value=1.1e+02 Score=20.86 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCcCCcHHHHHHHHH-hCC--------CeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhcCCceeCCcEEEEE
Q psy2347 17 LTETVKKEDLELEFE-KFG--------KLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79 (207)
Q Consensus 17 Lp~~~te~~L~~~F~-~~G--------~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l~g~~i~g~~l~V~ 79 (207)
+|.+++-++|.+... ++. .+..++..-+ -+ -||++.+.++.+-|++.+ .+..-++|+|.
T Consensus 29 V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDE-dG-D~Vtl~sddDl~~A~e~~--~e~~~~~l~Iw 96 (98)
T 1q1o_A 29 VEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE-DG-DFVVLGSDEDWNVAKEML--AENNEKFLNIR 96 (98)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECS-SS-CEEEECSHHHHHHHHHHH--HHTTCCEEEEE
T ss_pred ecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcC-CC-CEEEEcCHHHHHHHHHHH--HhhhcCeEEEE
Confidence 577777766654322 222 1234444332 22 699999999999999875 22234566654
No 363
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.59 E-value=36 Score=22.22 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=9.7
Q ss_pred CCcEEEEEEcCH
Q psy2347 45 PPGFAFVEFSNQ 56 (207)
Q Consensus 45 ~rG~afV~F~~~ 56 (207)
.+..|+|.|+|.
T Consensus 53 ~~e~ClV~F~D~ 64 (79)
T 2m0o_A 53 AREVCLVQFEDD 64 (79)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCEEEEEEcCC
Confidence 477999999873
No 364
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=20.53 E-value=61 Score=22.00 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=32.9
Q ss_pred CcCCcHHHHHHHHHhCCCeeEE-----EEeeC-CCcEEEEEEc-CHHHHHHHHHhcCCc
Q psy2347 18 TETVKKEDLELEFEKFGKLNSV-----WVAFN-PPGFAFVEFS-NQIDAEAACDSMNDQ 69 (207)
Q Consensus 18 p~~~te~~L~~~F~~~G~V~~v-----~i~~d-~rG~afV~F~-~~e~A~~Al~~l~g~ 69 (207)
...+++..|.++..+|+...+| +.+.+ +-+.-+|++. +.+++++|++.|..+
T Consensus 30 g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 30 GQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp EECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 3456677888888999853333 22222 4567778886 566777887776543
No 365
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=20.49 E-value=2.5e+02 Score=23.03 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=29.9
Q ss_pred CCCcEEEEcCCCcC----------CcHHHHHHHHHhCCCeeEEEEeeCCCcEEEEEEcCHHHHHHHHHhc
Q psy2347 7 ERGTRVYVGGLTET----------VKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM 66 (207)
Q Consensus 7 ~~~~~lfV~nLp~~----------~te~~L~~~F~~~G~V~~v~i~~d~rG~afV~F~~~e~A~~Al~~l 66 (207)
+....|.|.|..++ .+.+.|+++|++.+-- |.+..| .+.++.+++|+.+
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~--V~~~~d---------lt~~em~~~l~~f 118 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFT--IFPYGN---------VNQDQFFKLLTMV 118 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEE--EEEECS---------CCHHHHHHHHHHH
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCE--EEEccC---------CCHHHHHHHHHHH
Confidence 34556777777544 4567789999998753 344444 2455566665544
No 366
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=20.36 E-value=2.2e+02 Score=19.65 Aligned_cols=46 Identities=11% Similarity=0.291 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCcCCcHHHHHHHHHhCCCeeEEEEeeC---------CCcEEEEEEc
Q psy2347 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN---------PPGFAFVEFS 54 (207)
Q Consensus 8 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---------~rG~afV~F~ 54 (207)
...++++..-|...|.++..+++.+.+ |+.|..+.+ ..++.++.+.
T Consensus 14 ~~~~~i~s~~p~~~t~~df~~~l~~~g-i~~Iv~l~~~~~~~~~~~~~~~~~~~~p 68 (159)
T 1rxd_A 14 KNMRFLITHNPTNATLNKFIEELKKYG-VTTIVRVCEATYDTTLVEKEGIHVLDWP 68 (159)
T ss_dssp TTEEEEECCCCCGGGHHHHHHHHHHTT-EEEEEECSCCCSCCHHHHHTTCEEEECC
T ss_pred CCceEEEeCCCccccHHHHHHHHHHcC-CCEEEEcCCCccCHHHHHHcCCEEEeCC
Confidence 345778888888888888777777775 555443332 2356666664
Done!