Your job contains 1 sequence.
>psy2347
MSDGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAE
AACDSMNDQDLMGSKLRVEISRGRGRGRGGGGRGGRFDSRGGRGGYRGGGGGYGGGGYRD
GGDRFGGGGRGRGDGGFRGSRGGGGYRGGRDEYGGGRGGGGYRGGRDSRGFDGGKPDYYN
GGGGGRGGGGRFRSRSPVQRRYNVDEY
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2347
(207 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0011305 - symbol:Rsf1 "Repressor splicing factor 1... 217 4.5e-20 2
ZFIN|ZDB-GENE-040426-1798 - symbol:zgc:77155 "zgc:77155" ... 131 2.2e-10 2
FB|FBgn0030479 - symbol:Rbp1-like "Rbp1-like" species:722... 127 3.3e-10 2
UNIPROTKB|E1C8Y9 - symbol:SRSF3 "Uncharacterized protein"... 123 8.6e-10 2
UNIPROTKB|Q3SZR8 - symbol:SRSF3 "Serine/arginine-rich spl... 123 8.6e-10 2
UNIPROTKB|F2Z4N6 - symbol:SRSF3 "Uncharacterized protein"... 123 8.6e-10 2
UNIPROTKB|B4E241 - symbol:SFRS3 "Splicing factor, arginin... 123 8.6e-10 2
UNIPROTKB|P84103 - symbol:SRSF3 "Serine/arginine-rich spl... 123 8.6e-10 2
UNIPROTKB|I3LAE9 - symbol:LOC100523801 "Uncharacterized p... 123 8.6e-10 2
MGI|MGI:98285 - symbol:Srsf3 "serine/arginine-rich splici... 123 8.6e-10 2
RGD|1309233 - symbol:Srsf3 "serine/arginine-rich splicing... 123 8.6e-10 2
UNIPROTKB|F1RY92 - symbol:SRSF3 "Uncharacterized protein"... 120 1.8e-09 2
WB|WBGene00004703 - symbol:rsp-6 species:6239 "Caenorhabd... 119 2.2e-09 2
UNIPROTKB|Q18409 - symbol:rsp-6 "Probable splicing factor... 119 2.2e-09 2
UNIPROTKB|F1S4R5 - symbol:SRSF7 "Uncharacterized protein"... 139 3.3e-09 1
RGD|1307425 - symbol:Srsf7 "serine/arginine-rich splicing... 131 9.7e-09 1
UNIPROTKB|F1LZA3 - symbol:F1LZA3 "Uncharacterized protein... 133 1.4e-08 1
UNIPROTKB|Q3T106 - symbol:SRSF7 "Serine/arginine-rich spl... 131 1.7e-08 1
UNIPROTKB|C9JAB2 - symbol:SRSF7 "Serine/arginine-rich-spl... 131 1.7e-08 1
UNIPROTKB|Q5ZMI0 - symbol:SRSF7 "Uncharacterized protein"... 130 1.7e-08 1
UNIPROTKB|J9P2I8 - symbol:SRSF7 "Uncharacterized protein"... 131 1.7e-08 1
UNIPROTKB|Q16629 - symbol:SRSF7 "Serine/arginine-rich spl... 131 1.7e-08 1
UNIPROTKB|D4A720 - symbol:Sfrs7 "Protein Sfrs7" species:1... 131 1.7e-08 1
FB|FBgn0260944 - symbol:Rbp1 "RNA-binding protein 1" spec... 128 2.0e-08 1
MGI|MGI:1926232 - symbol:Srsf7 "serine/arginine-rich spli... 131 2.6e-08 1
UNIPROTKB|Q6K9C3 - symbol:RSZ23 "Serine/arginine-rich spl... 108 4.6e-08 2
UNIPROTKB|E1BVX5 - symbol:LOC100859609 "Uncharacterized p... 126 6.3e-08 1
ZFIN|ZDB-GENE-030616-631 - symbol:srsf3a "serine/arginine... 123 6.8e-08 1
ZFIN|ZDB-GENE-071005-2 - symbol:srsf3b "serine/arginine-r... 123 6.8e-08 1
ZFIN|ZDB-GENE-050913-95 - symbol:srsf7 "serine/arginine-r... 122 1.1e-07 1
TAIR|locus:2199837 - symbol:RSZ21 "RS-containing zinc fin... 102 2.0e-07 2
FB|FBgn0028554 - symbol:x16 species:7227 "Drosophila mela... 120 4.0e-07 1
UNIPROTKB|F1M8R2 - symbol:F1M8R2 "Uncharacterized protein... 110 3.0e-06 1
UNIPROTKB|E1BRL9 - symbol:LOC100859609 "Uncharacterized p... 109 4.9e-06 1
TAIR|locus:2124799 - symbol:RSZ22 "RS-containing zinc fin... 96 0.00010 1
TAIR|locus:2046638 - symbol:RSZ22a "RS-containing zinc fi... 95 0.00013 1
UNIPROTKB|E9PK21 - symbol:PPIE "Peptidyl-prolyl cis-trans... 94 0.00019 1
ZFIN|ZDB-GENE-030131-2420 - symbol:srsf2b "serine/arginin... 77 0.00024 2
WB|WBGene00004702 - symbol:rsp-5 species:6239 "Caenorhabd... 78 0.00024 2
UNIPROTKB|Q10021 - symbol:rsp-5 "Probable splicing factor... 78 0.00024 2
UNIPROTKB|P30352 - symbol:SRSF2 "Serine/arginine-rich spl... 77 0.00025 2
UNIPROTKB|Q3MHR5 - symbol:SRSF2 "Serine/arginine-rich spl... 77 0.00025 2
UNIPROTKB|Q01130 - symbol:SRSF2 "Serine/arginine-rich spl... 77 0.00025 2
UNIPROTKB|Q06A98 - symbol:SRSF2 "Serine/arginine-rich spl... 77 0.00025 2
MGI|MGI:98284 - symbol:Srsf2 "serine/arginine-rich splici... 77 0.00025 2
RGD|1359422 - symbol:Srsf2 "serine/arginine-rich splicing... 77 0.00025 2
UNIPROTKB|Q6PDU1 - symbol:Srsf2 "Serine/arginine-rich spl... 77 0.00025 2
UNIPROTKB|Q3ZCE8 - symbol:RBM8A "RNA-binding protein 8A" ... 73 0.00027 2
UNIPROTKB|F6XAE9 - symbol:RBM8A "Uncharacterized protein"... 73 0.00027 2
UNIPROTKB|Q9Y5S9 - symbol:RBM8A "RNA-binding protein 8A" ... 73 0.00027 2
RGD|1310099 - symbol:Rbm8a "RNA binding motif protein 8A"... 73 0.00027 2
ZFIN|ZDB-GENE-050306-51 - symbol:rbm8a "RNA binding motif... 73 0.00027 2
UNIPROTKB|E2QV85 - symbol:RBM8A "Uncharacterized protein"... 73 0.00029 2
UNIPROTKB|I3LI59 - symbol:RBM8A "Uncharacterized protein"... 73 0.00029 2
RGD|1311411 - symbol:Ppie "peptidylprolyl isomerase E (cy... 94 0.00031 1
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 76 0.00034 2
WB|WBGene00013293 - symbol:Y57G11A.5 species:6239 "Caenor... 88 0.00035 1
UNIPROTKB|E1BUM0 - symbol:PPIE "Uncharacterized protein" ... 94 0.00042 1
UNIPROTKB|A4FV72 - symbol:PPIE "Peptidyl-prolyl cis-trans... 94 0.00042 1
UNIPROTKB|G3MZS9 - symbol:PPIE "Peptidyl-prolyl cis-trans... 94 0.00042 1
UNIPROTKB|E2QVB5 - symbol:PPIE "Uncharacterized protein" ... 94 0.00042 1
UNIPROTKB|Q9UNP9 - symbol:PPIE "Peptidyl-prolyl cis-trans... 94 0.00042 1
UNIPROTKB|F1SV03 - symbol:PPIE "Uncharacterized protein" ... 94 0.00042 1
MGI|MGI:1917118 - symbol:Ppie "peptidylprolyl isomerase E... 94 0.00042 1
UNIPROTKB|Q5TGA3 - symbol:PPIE "Peptidyl-prolyl cis-trans... 94 0.00045 1
UNIPROTKB|E2RDB2 - symbol:SRSF2 "Uncharacterized protein"... 77 0.00050 2
UNIPROTKB|J9P7U8 - symbol:PPIE "Uncharacterized protein" ... 94 0.00052 1
ZFIN|ZDB-GENE-050417-167 - symbol:ppie "peptidylprolyl is... 93 0.00054 1
FB|FBgn0028382 - symbol:cyp33 "cyclophilin-33" species:72... 92 0.00069 1
UNIPROTKB|I3LRW8 - symbol:SRSF2 "Serine/arginine-rich-spl... 70 0.00083 2
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 84 0.00093 1
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 217 (81.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 42/74 (56%), Positives = 51/74 (68%)
Query: 7 ERGTRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSM 66
+RGTRVYVG LT+ V NSVW+AFNPPGFAFVEF ++ DAE ACD +
Sbjct: 4 QRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDIL 63
Query: 67 NDQDLMGSKLRVEI 80
N +L+GS+LRVEI
Sbjct: 64 NGSELLGSQLRVEI 77
Score = 35 (17.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 192 FRSRSPV 198
FRSRSPV
Sbjct: 186 FRSRSPV 192
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 131 (51.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVE+ + DAE A M+ +
Sbjct: 15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKV 74
Query: 71 LMGSKLRVEI 80
L G+++RVE+
Sbjct: 75 LCGARVRVEL 84
Score = 35 (17.4 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 193 RSRSPVQR 200
RSRSPV+R
Sbjct: 184 RSRSPVRR 191
Score = 32 (16.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 193 RSRSPVQR 200
RS+SPV+R
Sbjct: 191 RSKSPVRR 198
>FB|FBgn0030479 [details] [associations]
symbol:Rbp1-like "Rbp1-like" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0071011 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104452 OrthoDB:EOG4CNP7N eggNOG:NOG315521
EMBL:AY113490 RefSeq:NP_572880.2 UniGene:Dm.14416 SMR:Q9VYD8
STRING:Q9VYD8 EnsemblMetazoa:FBtr0073790 GeneID:32293
KEGG:dme:Dmel_CG1987 UCSC:CG1987-RA CTD:32293 FlyBase:FBgn0030479
InParanoid:Q9VYD8 OMA:IDGAHET ChiTaRS:Rbp1-like GenomeRNAi:32293
NextBio:777789 Uniprot:Q9VYD8
Length = 158
Score = 127 (49.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L + +VWVA NPPGFAFVEF ++ DAE A ++
Sbjct: 12 KVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTR 71
Query: 71 LMGSKLRVEI 80
G+++RVE+
Sbjct: 72 CCGTRIRVEM 81
Score = 30 (15.6 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 192 FRSRSPVQRR 201
+RSRSP + R
Sbjct: 129 YRSRSPRRSR 138
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 123 (48.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 71 LCGCRVRVEL 80
Score = 30 (15.6 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 192 FRSRSPVQRR 201
+R RSP RR
Sbjct: 104 YRRRSPPPRR 113
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 123 (48.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 71 LCGCRVRVEL 80
Score = 30 (15.6 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 192 FRSRSPVQRR 201
+R RSP RR
Sbjct: 104 YRRRSPPPRR 113
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 123 (48.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 71 LCGCRVRVEL 80
Score = 30 (15.6 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 192 FRSRSPVQRR 201
+R RSP RR
Sbjct: 104 YRRRSPPPRR 113
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 123 (48.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 71 LCGCRVRVEL 80
Score = 30 (15.6 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 192 FRSRSPVQRR 201
+R RSP RR
Sbjct: 104 YRRRSPPPRR 113
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 123 (48.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 71 LCGCRVRVEL 80
Score = 30 (15.6 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 192 FRSRSPVQRR 201
+R RSP RR
Sbjct: 104 YRRRSPPPRR 113
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 123 (48.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 71 LCGCRVRVEL 80
Score = 30 (15.6 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 192 FRSRSPVQRR 201
+R RSP RR
Sbjct: 104 YRRRSPPPRR 113
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 123 (48.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 71 LCGCRVRVEL 80
Score = 30 (15.6 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 192 FRSRSPVQRR 201
+R RSP RR
Sbjct: 104 YRRRSPPPRR 113
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 123 (48.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 71 LCGCRVRVEL 80
Score = 30 (15.6 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 192 FRSRSPVQRR 201
+R RSP RR
Sbjct: 104 YRRRSPPPRR 113
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 120 (47.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/70 (40%), Positives = 35/70 (50%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGGT 70
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 71 LCGCRVRVEL 80
Score = 30 (15.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 192 FRSRSPVQRR 201
+R RSP RR
Sbjct: 104 YRRRSPPPRR 113
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 119 (46.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVGGL VWVA PPGFAFVE+ + DAE A +++
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 71 LMGSKLRVEI 80
+ G + RVE+
Sbjct: 64 ICGVRARVEL 73
Score = 30 (15.6 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 193 RSRSPVQR 200
RSRSP +R
Sbjct: 149 RSRSPQER 156
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 119 (46.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVGGL VWVA PPGFAFVE+ + DAE A +++
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 71 LMGSKLRVEI 80
+ G + RVE+
Sbjct: 64 ICGVRARVEL 73
Score = 30 (15.6 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 193 RSRSPVQR 200
RSRSP +R
Sbjct: 149 RSRSPQER 156
>UNIPROTKB|F1S4R5 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
Length = 268
Score = 139 (54.0 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 4 GMMERGTRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAAC 63
G +E T+VYVG L +VW+A NPPGFAFVEF + DAE A
Sbjct: 32 GELESKTKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV 91
Query: 64 DSMNDQDLMGSKLRVEI 80
++ + + GS++RVE+
Sbjct: 92 RGLDGKVICGSRVRVEL 108
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DAE A ++ +
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 71 VICGSRVRVEL 81
>UNIPROTKB|F1LZA3 [details] [associations]
symbol:F1LZA3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00776911
Ensembl:ENSRNOT00000038472 Uniprot:F1LZA3
Length = 262
Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/80 (37%), Positives = 40/80 (50%)
Query: 1 MSDGMMERGTRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAE 60
M M R T+VYVG L +VW+A NPPGFAFVEF + DAE
Sbjct: 5 MRKSMKTRETKVYVGNLGTGAGKGELERALSYYGSLRTVWIARNPPGFAFVEFEDPRDAE 64
Query: 61 AACDSMNDQDLMGSKLRVEI 80
++ + + GS +RVE+
Sbjct: 65 DLVRGLDGKVICGSGVRVEL 84
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 131 (51.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DAE A ++ +
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 71 VICGSRVRVEL 81
>UNIPROTKB|C9JAB2 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
Uniprot:C9JAB2
Length = 235
Score = 131 (51.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DAE A ++ +
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 71 VICGSRVRVEL 81
>UNIPROTKB|Q5ZMI0 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
Uniprot:Q5ZMI0
Length = 223
Score = 130 (50.8 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DAE A ++ +
Sbjct: 9 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVLGLDGK 68
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 69 IICGSRVRVEV 79
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 131 (51.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DAE A ++ +
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 71 VICGSRVRVEL 81
>UNIPROTKB|Q16629 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
Ensembl:ENST00000431066 Ensembl:ENST00000443213
Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
Length = 238
Score = 131 (51.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DAE A ++ +
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 71 VICGSRVRVEL 81
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 131 (51.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DAE A ++ +
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 71 VICGSRVRVEL 81
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L + +VWVA NPPGFAFVEF ++ DAE A +++
Sbjct: 12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTR 71
Query: 71 LMGSKLRVEI 80
G+++RVE+
Sbjct: 72 CCGTRIRVEM 81
>MGI|MGI:1926232 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
Length = 267
Score = 131 (51.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DAE A ++ +
Sbjct: 40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 100 VICGSRVRVEL 110
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 108 (43.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
RVYVG L V SVWVA PPGFAF++F ++ DAE D++ D D
Sbjct: 3 RVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAE---DAIRDLD 59
Score = 32 (16.3 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 193 RSRSPVQRRYN 203
R RSP +R Y+
Sbjct: 148 RDRSPKRRSYS 158
Score = 31 (16.0 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 193 RSRSPVQRR 201
RSRSP RR
Sbjct: 131 RSRSPRYRR 139
>UNIPROTKB|E1BVX5 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 OMA:LKRSRYF EMBL:AADN02041253
EMBL:AADN02041254 EMBL:AADN02041255 EMBL:AADN02041256
IPI:IPI00821462 ProteinModelPortal:E1BVX5
Ensembl:ENSGALT00000038945 ArrayExpress:E1BVX5 Uniprot:E1BVX5
Length = 235
Score = 126 (49.4 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DA+ S +
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAKPLLKSSKSR 70
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 71 VICGSRVRVEV 81
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L + SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 15 KVYVGNLGNSGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRT 74
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 75 LCGCRVRVEM 84
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 28/70 (40%), Positives = 36/70 (51%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVWVA NPPGFAFVEF + DA A ++ +
Sbjct: 10 KVYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRT 69
Query: 71 LMGSKLRVEI 80
L G ++RVE+
Sbjct: 70 LCGCRVRVEL 79
>ZFIN|ZDB-GENE-050913-95 [details] [associations]
symbol:srsf7 "serine/arginine-rich splicing factor
7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
Uniprot:A3KNI1
Length = 210
Score = 122 (48.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L SVW+A NP GFAFVEF + DAE + ++ +
Sbjct: 11 TKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRDAEDSVRGLDGK 70
Query: 70 DLMGSKLRVEI 80
+ GS++RVE+
Sbjct: 71 VICGSRVRVEL 81
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 102 (41.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQ---IDAEAACDSM 66
TRVYVG L V +VWVA PPG+AF+EF ++ +DA +A D
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 67 N 67
N
Sbjct: 62 N 62
Score = 31 (16.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 193 RSRSPVQRRYNVDEY 207
R RSP RR +Y
Sbjct: 112 RRRSPSPRRRRSPDY 126
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 120 (47.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG L SVW+A NPPGFAFVEF + DA A ++ +
Sbjct: 9 KVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDGRT 68
Query: 71 LMGSKLRVEI 80
+ G + RVE+
Sbjct: 69 VCGRRARVEL 78
>UNIPROTKB|F1M8R2 [details] [associations]
symbol:F1M8R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00343
SMART:SM00360 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00564263 Ensembl:ENSRNOT00000047994
Uniprot:F1M8R2
Length = 212
Score = 110 (43.8 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 13 YVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDLM 72
YVG L V +VW+A NPPGFAFV F + DAE A + + +
Sbjct: 9 YVGNLGTGVGKGELERAFSYYGPLRTVWIARNPPGFAFV-FEDPRDAEDAVGGLGGKVIC 67
Query: 73 GSKLRVEI 80
GS++RVE+
Sbjct: 68 GSRVRVEL 75
>UNIPROTKB|E1BRL9 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 EMBL:AADN02041253 EMBL:AADN02041254
EMBL:AADN02041255 EMBL:AADN02041256 IPI:IPI00593697
ProteinModelPortal:E1BRL9 Ensembl:ENSGALT00000022437
ArrayExpress:E1BRL9 Uniprot:E1BRL9
Length = 226
Score = 109 (43.4 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T+VYVG L +VW+A NPPGFAFVEF + DA S
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAXXXXASKPLL 70
Query: 70 DLM-GSKLRVEI 80
++ GS++RVE+
Sbjct: 71 KVICGSRVRVEV 82
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 96 (38.9 bits), Expect = 0.00010, P = 0.00010
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
+RVYVG L V SVWVA PPG+AF++F + DA A +++ +
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 70 D 70
+
Sbjct: 62 N 62
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 10 TRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAA 62
+RVYVG L V SVWVA PPG+AF++F + DA A
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDA 54
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 94 (38.1 bits), Expect = 0.00019, P = 0.00019
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 77 (32.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAILDGRELRVQM 89
Score = 33 (16.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 123 RSRSPRRRR 131
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 78 (32.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV+F + DAE AC ++ + + GS +R+ +
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Score = 31 (16.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSR+P +RR
Sbjct: 97 RSRTPPRRR 105
Score = 30 (15.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 193 RSRSPVQ 199
RSRSPV+
Sbjct: 124 RSRSPVR 130
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 78 (32.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV+F + DAE AC ++ + + GS +R+ +
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Score = 31 (16.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSR+P +RR
Sbjct: 97 RSRTPPRRR 105
Score = 30 (15.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 193 RSRSPVQ 199
RSRSPV+
Sbjct: 124 RSRSPVR 130
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 77 (32.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Score = 33 (16.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 118 RSRSPRRRR 126
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 77 (32.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Score = 33 (16.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 118 RSRSPRRRR 126
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 77 (32.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Score = 33 (16.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 118 RSRSPRRRR 126
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 77 (32.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Score = 33 (16.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 118 RSRSPRRRR 126
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 77 (32.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Score = 33 (16.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 118 RSRSPRRRR 126
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 77 (32.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Score = 33 (16.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 118 RSRSPRRRR 126
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 77 (32.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Score = 33 (16.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 118 RSRSPRRRR 126
>UNIPROTKB|Q3ZCE8 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
Length = 174
Score = 73 (30.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79
G+ VE+ +A+AA + +N QDLMG + V+
Sbjct: 115 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147
Score = 33 (16.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 165 RSRSPDRRR 173
>UNIPROTKB|F6XAE9 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
Uniprot:F6XAE9
Length = 174
Score = 73 (30.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79
G+ VE+ +A+AA + +N QDLMG + V+
Sbjct: 115 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147
Score = 33 (16.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 165 RSRSPDRRR 173
>UNIPROTKB|Q9Y5S9 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
Ensembl:ENST00000369307 Ensembl:ENST00000578414
Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
Length = 174
Score = 73 (30.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79
G+ VE+ +A+AA + +N QDLMG + V+
Sbjct: 115 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147
Score = 33 (16.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 165 RSRSPDRRR 173
>RGD|1310099 [details] [associations]
symbol:Rbm8a "RNA binding motif protein 8A" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
Length = 174
Score = 73 (30.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79
G+ VE+ +A+AA + +N QDLMG + V+
Sbjct: 115 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 147
Score = 33 (16.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 165 RSRSPDRRR 173
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 73 (30.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79
G+A VE+ +A+AA + +N Q+LMG + V+
Sbjct: 115 GYALVEYETYKEAQAAMEGLNGQELMGQPISVD 147
Score = 33 (16.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 165 RSRSPDRRR 173
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 73 (30.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79
G+ VE+ +A+AA + +N QDLMG + V+
Sbjct: 118 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 150
Score = 33 (16.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 168 RSRSPDRRR 176
>UNIPROTKB|I3LI59 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
Length = 177
Score = 73 (30.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVE 79
G+ VE+ +A+AA + +N QDLMG + V+
Sbjct: 118 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 150
Score = 33 (16.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 168 RSRSPDRRR 176
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 94 (38.1 bits), Expect = 0.00031, P = 0.00031
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 76 (31.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGALLDGRELRVQM 89
Score = 33 (16.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 193 RSRSPVQRRYN 203
RSRSP +R+++
Sbjct: 118 RSRSPRRRKHS 128
>WB|WBGene00013293 [details] [associations]
symbol:Y57G11A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z99279
RefSeq:NP_502757.2 ProteinModelPortal:O18219 SMR:O18219
EnsemblMetazoa:Y57G11A.5 GeneID:190364 KEGG:cel:CELE_Y57G11A.5
UCSC:Y57G11A.5 CTD:190364 WormBase:Y57G11A.5 eggNOG:NOG301947
HOGENOM:HOG000020379 InParanoid:O18219 OMA:KKICDLE Uniprot:O18219
Length = 110
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 11 RVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
+VYVG + S+W+A PPGFAFV F + A A +N +
Sbjct: 18 QVYVGNMPFDATEKEIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKK 77
Query: 71 LMGSKLRVEI 80
+ + +VE+
Sbjct: 78 ICDLEAKVEM 87
>UNIPROTKB|E1BUM0 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
UniGene:Gga.4709 ProteinModelPortal:E1BUM0
Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
Length = 301
Score = 94 (38.1 bits), Expect = 0.00042, P = 0.00042
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>UNIPROTKB|A4FV72 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
InterPro:IPR016304 InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160
PIRSF:PIRSF001475 PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0006457 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 EMBL:BC123818 IPI:IPI00686175
RefSeq:NP_001091630.1 UniGene:Bt.21742 ProteinModelPortal:A4FV72
SMR:A4FV72 PRIDE:A4FV72 GeneID:787681 KEGG:bta:787681 CTD:10450
KO:K09564 NextBio:20928622 Uniprot:A4FV72
Length = 301
Score = 94 (38.1 bits), Expect = 0.00042, P = 0.00042
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>UNIPROTKB|G3MZS9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0006457 "protein folding"
evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 UniGene:Bt.21742 OMA:AFIEFEL
EMBL:DAAA02009142 Ensembl:ENSBTAT00000063035 Uniprot:G3MZS9
Length = 301
Score = 94 (38.1 bits), Expect = 0.00042, P = 0.00042
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>UNIPROTKB|E2QVB5 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 EMBL:AAEX03009569
EMBL:AAEX03009570 RefSeq:XP_848739.1 Ensembl:ENSCAFT00000004892
GeneID:607232 KEGG:cfa:607232 NextBio:20892973 Uniprot:E2QVB5
Length = 301
Score = 94 (38.1 bits), Expect = 0.00042, P = 0.00042
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>UNIPROTKB|Q9UNP9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=IMP] [GO:0016018 "cyclosporin A binding"
evidence=TAS] [GO:0000413 "protein peptidyl-prolyl isomerization"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0006355 GO:GO:0000166 EMBL:CH471059
EMBL:AL035404 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 EMBL:AL033527 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0016018 PDB:2KU7 PDBsum:2KU7
HOVERGEN:HBG001065 CTD:10450 KO:K09564 EMBL:AF104012 EMBL:AF104013
EMBL:AF042385 EMBL:AF042386 EMBL:AK313666 EMBL:AL049824
EMBL:BC004898 EMBL:BC008451 EMBL:BC107736 IPI:IPI00009316
IPI:IPI00220188 PIR:S66681 RefSeq:NP_006103.1 RefSeq:NP_982281.1
UniGene:Hs.524690 PDB:1ZMF PDB:2CQB PDB:2KYX PDB:2R99 PDB:3LPY
PDB:3MDF PDB:3UCH PDBsum:1ZMF PDBsum:2CQB PDBsum:2KYX PDBsum:2R99
PDBsum:3LPY PDBsum:3MDF PDBsum:3UCH ProteinModelPortal:Q9UNP9
SMR:Q9UNP9 IntAct:Q9UNP9 STRING:Q9UNP9 PhosphoSite:Q9UNP9
DMDM:13124097 PaxDb:Q9UNP9 PRIDE:Q9UNP9 DNASU:10450
Ensembl:ENST00000324379 Ensembl:ENST00000356511 GeneID:10450
KEGG:hsa:10450 UCSC:uc001cds.2 UCSC:uc001cdv.3
GeneCards:GC01P040157 HGNC:HGNC:9258 HPA:HPA020131 MIM:602435
neXtProt:NX_Q9UNP9 PharmGKB:PA33583 OrthoDB:EOG4STS55
PhylomeDB:Q9UNP9 ChiTaRS:PPIE EvolutionaryTrace:Q9UNP9
GenomeRNAi:10450 NextBio:39609 ArrayExpress:Q9UNP9 Bgee:Q9UNP9
CleanEx:HS_PPIE Genevestigator:Q9UNP9 GermOnline:ENSG00000084072
Uniprot:Q9UNP9
Length = 301
Score = 94 (38.1 bits), Expect = 0.00042, P = 0.00042
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>UNIPROTKB|F1SV03 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 KO:K09564 OMA:AFIEFEL EMBL:CR956427
RefSeq:XP_003127865.1 Ensembl:ENSSSCT00000004060 GeneID:100516562
KEGG:ssc:100516562 Uniprot:F1SV03
Length = 301
Score = 94 (38.1 bits), Expect = 0.00042, P = 0.00042
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>MGI|MGI:1917118 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0045070 "positive regulation of viral
genome replication" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1917118 GO:GO:0006457 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065
CTD:10450 KO:K09564 OMA:AFIEFEL OrthoDB:EOG4STS55 EMBL:AK008177
EMBL:BC045154 EMBL:AF182825 IPI:IPI00111343 RefSeq:NP_062362.1
UniGene:Mm.126873 ProteinModelPortal:Q9QZH3 SMR:Q9QZH3
STRING:Q9QZH3 PhosphoSite:Q9QZH3 REPRODUCTION-2DPAGE:IPI00111343
PaxDb:Q9QZH3 PRIDE:Q9QZH3 Ensembl:ENSMUST00000030404 GeneID:56031
KEGG:mmu:56031 UCSC:uc008uow.1 InParanoid:Q9QZH3 NextBio:311788
Bgee:Q9QZH3 CleanEx:MM_PPIE Genevestigator:Q9QZH3
GermOnline:ENSMUSG00000028651 Uniprot:Q9QZH3
Length = 301
Score = 94 (38.1 bits), Expect = 0.00042, P = 0.00042
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>UNIPROTKB|Q5TGA3 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 EMBL:AL035404
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL033527 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 HOVERGEN:HBG001065 CTD:10450
KO:K09564 OMA:AFIEFEL EMBL:AL049824 UniGene:Hs.524690 DNASU:10450
GeneID:10450 KEGG:hsa:10450 HGNC:HGNC:9258 ChiTaRS:PPIE
GenomeRNAi:10450 NextBio:39609 IPI:IPI00514173
RefSeq:NP_001181936.1 SMR:Q5TGA3 MINT:MINT-1475497 STRING:Q5TGA3
Ensembl:ENST00000372830 UCSC:uc001cdw.3 Uniprot:Q5TGA3
Length = 314
Score = 94 (38.1 bits), Expect = 0.00045, P = 0.00045
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 77 (32.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV F ++ DAE A D+M+ L G +LRV++
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89
Score = 30 (15.6 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
R+RSP +RR
Sbjct: 118 RTRSPRRRR 126
>UNIPROTKB|J9P7U8 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 OMA:AFIEFEL EMBL:AAEX03009569
EMBL:AAEX03009570 Ensembl:ENSCAFT00000046678 Uniprot:J9P7U8
Length = 343
Score = 94 (38.1 bits), Expect = 0.00052, P = 0.00052
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 12 VYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDAEAACDSM 66
+YVGGL E V + + + GFAFVEF DA AA D+M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 67 NDQDLMGSKLRVEI 80
N+ +L G +RV +
Sbjct: 68 NESELFGRTIRVNL 81
>ZFIN|ZDB-GENE-050417-167 [details] [associations]
symbol:ppie "peptidylprolyl isomerase E
(cyclophilin E)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050417-167 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 CTD:10450 KO:K09564 OrthoDB:EOG4STS55
EMBL:BC093329 IPI:IPI00511584 RefSeq:NP_001017678.1
UniGene:Dr.79339 ProteinModelPortal:Q561T2 SMR:Q561T2 GeneID:550373
KEGG:dre:550373 InParanoid:Q561T2 NextBio:20879625 Uniprot:Q561T2
Length = 302
Score = 93 (37.8 bits), Expect = 0.00054, P = 0.00054
Identities = 27/81 (33%), Positives = 36/81 (44%)
Query: 6 MERGTRV-YVGGLTETVXXXXXXXXXXXXXXXNSVWVAFNPP-----GFAFVEFSNQIDA 59
M RV YVGGL E V + + + GFAF+EF D+
Sbjct: 1 MAASKRVLYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDS 60
Query: 60 EAACDSMNDQDLMGSKLRVEI 80
AA D+MN+ +L G +RV I
Sbjct: 61 AAAIDNMNESELFGRTIRVNI 81
>FB|FBgn0028382 [details] [associations]
symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
Uniprot:Q9V3G3
Length = 300
Score = 92 (37.4 bits), Expect = 0.00069, P = 0.00069
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAF+E+ DA AA D+MND +L G +RV +
Sbjct: 48 GFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNL 81
>UNIPROTKB|I3LRW8 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:FP565487
Ensembl:ENSSSCT00000025710 OMA:SAPPRRY Uniprot:I3LRW8
Length = 188
Score = 70 (29.7 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 47 GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEI 80
GFAFV ++ DAE A D+M+ L G +LRV++
Sbjct: 23 GFAFVRXHDKRDAEDAMDAMDGAVLDGRELRVQM 56
Score = 33 (16.7 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 193 RSRSPVQRR 201
RSRSP +RR
Sbjct: 85 RSRSPRRRR 93
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 5 MMERGTRVYVGGLTETVXXXXXXXXXXXXXXXNSVWVAFN-----PPGFAFVEFSNQIDA 59
M +G VYVG + N+V + ++ P GFAFVEFS + A
Sbjct: 1 MASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGA 60
Query: 60 EAACDSMNDQDLMGSKLRV 78
+ A + +N G LRV
Sbjct: 61 QRAVEQLNGVAFNGRNLRV 79
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 207 87 0.00091 102 3 11 22 0.46 29
29 0.48 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 71
No. of states in DFA: 556 (59 KB)
Total size of DFA: 110 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.14u 0.06s 7.20t Elapsed: 00:00:06
Total cpu time: 7.14u 0.06s 7.20t Elapsed: 00:00:07
Start: Thu Aug 15 12:58:35 2013 End: Thu Aug 15 12:58:42 2013