RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2347
(207 letters)
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 73.1 bits (179), Expect = 7e-18
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDA 59
++++ +YVG L+ +E + F K G + + + + GF FVE+ ++ DA
Sbjct: 3 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADA 62
Query: 60 EAACDSMNDQDLMGSKLRVEISRGRGRGR 88
E A +N L +R + G GR
Sbjct: 63 ENAMRYINGTRLDDRIIRTDWDAGFKEGR 91
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 70.0 bits (171), Expect = 1e-16
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN------PPGFAFVEFSNQIDAE 60
+ +++ V + + ++ F FG+L +V + GF FV+F + DA+
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 61 AACDSM-NDQDLMGSKLRVEISRGRGR 86
A +++ + L G +L +E +
Sbjct: 66 KAFNALCHSTHLYGRRLVLEWADSEVT 92
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 70.0 bits (171), Expect = 1e-16
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMN 67
+ VY GG+ + + + F FG++ + V F G++FV FS A A S+N
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV-FPEKGYSFVRFSTHESAAHAIVSVN 75
Query: 68 DQDLMGSKLRVEISRGR 84
+ G ++ +
Sbjct: 76 GTTIEGHVVKCYWGKES 92
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 68.0 bits (166), Expect = 5e-16
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 12 VYVGGLTETVKKEDLELEFEKFGKLNSVWVA-----FNPPGFAFVEFSNQIDAEAACDSM 66
+YVG L V + L +F G + S+ V G+A+V F DAE A D+M
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 67 NDQDLMGSKLRVEISR 82
N + G +R+ S+
Sbjct: 63 NFDVIKGKPVRIMWSQ 78
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 68.5 bits (167), Expect = 6e-16
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP--GFAFVEFSNQIDAEAACD 64
E +Y+ L + E++ F K+G + + V P G A+V + + DA+ ACD
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 65 SMNDQDLMGSKLRVEISRGR 84
++ ++ L V
Sbjct: 65 HLSGFNVCNRYLVVLYYNAN 84
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 66.6 bits (162), Expect = 2e-15
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65
+ + L+ + +++L+ FE ++ V G A++EF ++ DAE +
Sbjct: 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEE 72
Query: 66 MNDQDLMGSKLRVEISRGRGRGRG 89
++ G + + + +G RG
Sbjct: 73 KQGAEIDGRSVSLYYTGEKGGTRG 96
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 64.9 bits (158), Expect = 9e-15
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 7 ERGTRVYVGGL-TETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65
+RV++G L T VKK D+E F K+GK+ V GFAFV++ N+ +A AA
Sbjct: 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV---HKGFAFVQYVNERNARAAVAG 69
Query: 66 MNDQDLMGSKLRVEISRGRGRGRGGGGRG 94
+ + + G L + ++ R G G
Sbjct: 70 EDGRMIAGQVLDINLAAEPKVNRSGPSSG 98
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 64.3 bits (156), Expect = 1e-14
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEAACDS 65
++++GGL + + ++ FG L + + + G+AF E+ + + A
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 66 MNDQDLMGSKLRVEISRGRGRG 87
+N L KL V+ + +
Sbjct: 63 LNGMQLGDKKLLVQRASVGAKN 84
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 63.4 bits (154), Expect = 2e-14
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 8 RGTRVYVGGLTETVKKEDLELEFEKFGKL-----NSVWVAFNPPGFAFVEFSNQIDAEAA 62
+ T +YV L T+ + L+ F K+G + + P G AFV ++ + +A+ A
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 63 CDSMNDQDLMGSKLRVEISR 82
++N+ G + +
Sbjct: 65 ISALNNVIPEGGSQPLSVRL 84
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 63.0 bits (153), Expect = 3e-14
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP----PGFAFVEFSNQIDAEAACDSM 66
++ V L V D++ F +FG L V ++ G A V F + DA A
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 67 NDQDLMGSKLRVEIS 81
N L G + +++
Sbjct: 62 NGVPLDGRPMNIQLV 76
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 63.1 bits (153), Expect = 4e-14
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 13 YVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP--------GFAFVEFSNQIDAEAACD 64
++ L + +E L+ F K G + S ++ GF FVE+ A+ A
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 65 SMNDQDLMGSKLRVEISRGRGR 86
+ + G KL V IS +
Sbjct: 62 QLQGHTVDGHKLEVRISERATK 83
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 63.1 bits (153), Expect = 4e-14
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDA 59
M +YVGGL E V + L F FG + + + + GFAFVEF DA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 60 EAACDSMNDQDLMGSKLRVEISRGR 84
AA D+MN+ +L G +RV +++
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPM 85
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 63.1 bits (153), Expect = 4e-14
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVW-----VAFNPPGFAFVEFSNQIDAEAA 62
R +YV GL +T+ +++LE F ++G++ + V G F+ F +I+AE A
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 63 CDSMNDQDLMGSKLRVEIS 81
+N Q G+ + +
Sbjct: 65 IKGLNGQKPSGATEPITVK 83
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 62.7 bits (152), Expect = 5e-14
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65
M +YV L + +E +E EF V +AFV FSN+ DA A +
Sbjct: 5 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-KKIRDYAFVHFSNREDAVEAMKA 63
Query: 66 MNDQDLMGSKLRVEISRGRGRG 87
+N + L GS + V +++ +
Sbjct: 64 LNGKVLDGSPIEVTLAKPVDKD 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 62.7 bits (152), Expect = 5e-14
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACD 64
T + V L + + +L F G +N+ + + G+AFV+F++++D++ A
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 65 SMNDQDLMGSKLRVEISR 82
+N + +L+V +R
Sbjct: 63 VLNGITVRNKRLKVSYAR 80
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 62.7 bits (152), Expect = 6e-14
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
+R++VG L + +E++ FEK+GK V++ GF F+ + AE A +++
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNM 67
Query: 70 DLMGSKLRVEISR 82
L G +LRV +
Sbjct: 68 PLRGKQLRVRFAC 80
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 62.8 bits (152), Expect = 6e-14
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVA-----FNPPGFAFVEFSNQIDAEAACD 64
+ V L+E ++ DL+ F FG ++ +++A GFAF+ F + DA A
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 65 SMNDQDLMGSKLRVEISRGR 84
++ L VE ++
Sbjct: 69 GVSGFGYDHLILNVEWAKPS 88
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 62.4 bits (151), Expect = 9e-14
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 10 TRVYVGGLTETVKKEDLELE----FEKFGKLNS--VWVAFNPPGFAFVEFSNQIDAEAAC 63
+Y+ L E +KK++L+ F +FG++ V + G AFV F A A
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 64 DSMNDQDLMGSKLRVEISRGR 84
SM +R++ ++
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTD 84
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 62.0 bits (150), Expect = 1e-13
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN---PPGFAFVEFSNQIDAEAACDSM 66
R++V + + DL F +FGK+ V + FN GF FV F N DA+ A + +
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 71
Query: 67 NDQDLMGSKLRVEISRGRGR 86
+ + G K+ V + R
Sbjct: 72 HGTVVEGRKIEVNNATARVM 91
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 62.0 bits (150), Expect = 2e-13
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 1 MSDGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPG----FAFVEFSNQ 56
+DG+ + V + + +E EK+G++ + V N +V+F +
Sbjct: 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 78
Query: 57 IDAEAACDSMNDQDLMGSKLRVEIS 81
DAE A +N++ G + E+S
Sbjct: 79 EDAEKAVIDLNNRWFNGQPIHAELS 103
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 61.6 bits (149), Expect = 2e-13
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 5 MME---RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP---PGFAFVEFSNQID 58
MME + +YVG L+ V + + F + G S + + FVEF D
Sbjct: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD 60
Query: 59 AEAACDSMNDQDLMGSKLRVEISR 82
A AA +MN + ++G +++V +
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT 84
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 61.3 bits (148), Expect = 2e-13
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP-----PGFAFVEFSNQIDAEAACD 64
T + V L + + +E+ F G++ S + + G+ FV + + DAE A +
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 65 SMNDQDLMGSKLRVEISR 82
++N L ++V +R
Sbjct: 63 TLNGLRLQTKTIKVSYAR 80
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 61.2 bits (148), Expect = 2e-13
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNS-----VWVAFNPPGFAFVEFSNQIDAEA 61
+ VYVGGL E V + L F + G + + V G+ FVEF ++ DA+
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 66
Query: 62 ACDSMNDQDLMGSKLRVEISRGRGR 86
A M+ L G +RV + +
Sbjct: 67 AIKIMDMIKLYGKPIRVNKASAHNK 91
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 61.1 bits (148), Expect = 3e-13
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP-----PGFAFVEFSNQIDAE 60
+++ + + V GL ++DL+ F FG++ V V + GF FV F+
Sbjct: 5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 64
Query: 61 AACDSMNDQDLMGSKLRVEISRGR 84
+ + G ++ +
Sbjct: 65 KVMSQRH--MIDGRWCDCKLPNSK 86
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 58.8 bits (142), Expect = 1e-12
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP-----PGFAFVEFSNQIDAEAACDS 65
++++GGL+ K+DL+ F KFG++ + +P GF FV F + D
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD- 59
Query: 66 MNDQDLMGSKLRVE 79
+ L G + +
Sbjct: 60 QKEHKLNGKVIDPK 73
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 59.4 bits (143), Expect = 1e-12
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVA-------------FNPPGFAFVEFSN 55
+ +YV GL ++V +DL F++ G + P G A V + +
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 67
Query: 56 QIDAEAACDSMNDQDLMGSKLRVEISRGR 84
A+AA + + +D GSKL+V ++R +
Sbjct: 68 PPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 58.9 bits (142), Expect = 2e-12
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
+ V+VG T + +++L F ++G + V++ FAFV F++ A++ C D
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC--GEDL 63
Query: 70 DLMGSKLRVEISRGRGRGRGGGGRG 94
+ G + + + + G G
Sbjct: 64 IIKGISVHISNAEPKHNSNSGPSSG 88
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 58.5 bits (141), Expect = 2e-12
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPG---FAFVEFSNQIDAEAACDSM 66
+++ L +++ + L F FG + S V + G + FV F Q AE A + M
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM 68
Query: 67 NDQDLMGSKLRVEISRGR 84
N L K+ V + R
Sbjct: 69 NGMLLNDRKVFVGRFKSR 86
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 58.5 bits (141), Expect = 3e-12
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSV-------WVAFNPPGFAFVEFSNQIDAEAA 62
R+++GG+ + K+E++ E K + GFAFVE+ + A A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 63 CDSMNDQD--LMGSKLRVEISRGR 84
+ L G ++ V+ +
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAEPE 85
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 57.7 bits (139), Expect = 3e-12
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP-----PGFAFVEFSNQIDAEAACDS 65
+++VGGL+ +E + F FG++ S+ + + GF F+ F + + +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME- 59
Query: 66 MNDQDLMGSKLRVEI 80
++ SK +++
Sbjct: 60 KKYHNVGLSKCEIKV 74
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 57.3 bits (138), Expect = 4e-12
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNP-----PGFAFVEFSNQIDAEAACDS 65
++++GGL+ +E L F +FG++ V +P GF FV F +Q + +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 60
Query: 66 MNDQDLMGSKLRVEI 80
+ +L + ++
Sbjct: 61 QSRHELDSKTIDPKV 75
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 58.8 bits (141), Expect = 5e-12
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGF-----AFVEFSNQIDAEA 61
+ + V + TV + L FE++G + SV + + FV+F + A+
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
Query: 62 ACDSMNDQDLMGSKLRVEISRGRGRGRGGGGRGGRFDSRGGRGGYRGGGGGY 113
A +N +++ +L+V ++ + R G G G G GY
Sbjct: 100 AIAGLNGFNILNKRLKVALAASGHQ-------------RPGIAGAVGDGNGY 138
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 57.4 bits (138), Expect = 5e-12
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 12 VYVGGLTETVKKEDLELEFEKFG------KLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65
+++G L + ++ L F FG K+ N G+AF+ F++ ++AA ++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 66 MNDQDLMGSKLRVEISRGRG-RG 87
MN Q L + V + + +G
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSKG 83
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 57.0 bits (137), Expect = 7e-12
Identities = 17/82 (20%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAAC 63
G ++V + E ++++++ +F +G++ ++ + + G+A VE+ A AA
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 66
Query: 64 DSMNDQDLMGSKLRVEISRGRG 85
+++N ++MG ++V+ +G
Sbjct: 67 EALNGAEIMGQTIQVDWCFVKG 88
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 57.2 bits (138), Expect = 8e-12
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 23 KEDLELEFEKFGKLNSVWVAFNPP-GFAFVEFSNQIDAEAACDSMNDQDLMGSKLRVEIS 81
+EDL +E KFG++ + + P G A V F + +A+ +++ + G ++ +
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
Query: 82 RGR 84
G
Sbjct: 93 DGT 95
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 56.7 bits (136), Expect = 9e-12
Identities = 8/78 (10%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKL-----NSVWVAFNPPGFAFVEFSNQIDAEAACD 64
+++ + + ++ + + FA+++ +++ DA +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 65 SMNDQDLMGSKLRVEISR 82
+N + G L ++S
Sbjct: 62 KLNGLKIEGYTLVTKVSN 79
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 56.7 bits (136), Expect = 1e-11
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEA 61
G V++ L+ ++E L ++FG L V V + G AF +F Q A+
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 65
Query: 62 ACDSMNDQ------DLMGSKLRVEISRGRGR 86
+ + + L G +L+V+++ R
Sbjct: 66 CLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 96
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 56.2 bits (135), Expect = 1e-11
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSM 66
+G +YV G + L F FG + + + P AFV + A+ A +
Sbjct: 3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAEL 59
Query: 67 NDQDLMGSKLRVEISRGR 84
N + +L+V I+R +
Sbjct: 60 NGTQVESVQLKVNIARKQ 77
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 56.7 bits (136), Expect = 1e-11
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMN 67
+ V GGL V + L EK G ++++ + N P ++F + +++ A ++N
Sbjct: 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP-YSFARYRTTEESKRAYVTLN 77
Query: 68 DQDLM---GSKLRVEIS 81
++++ G K+ + ++
Sbjct: 78 GKEVVDDLGQKITLYLN 94
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 56.6 bits (136), Expect = 2e-11
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ +E L +E++GKL V +P GF FV FS+ + +A
Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77
Query: 62 ACDSMNDQDLMGSKLRVEISRGR 84
A + + G + + + R
Sbjct: 78 AM-AARPHSIDGRVVEPKRAVAR 99
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 56.6 bits (136), Expect = 2e-11
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNS-VWVAFNPPGFAFVEFSNQIDAEAACDSMND 68
R+ V L V + L F KFG + + N A +++++ + A+ A S++
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 67
Query: 69 QDL--MGSKLRVEISR 82
Q++ LR++ S+
Sbjct: 68 QNIYNACCTLRIDFSK 83
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 55.8 bits (134), Expect = 3e-11
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 7 ERGTR-VYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAE 60
ER R V+ L ++ DLE F GK+ V + + G A+VEF
Sbjct: 15 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 74
Query: 61 AACDSMNDQDLMGSKLRVEISRGR 84
+ Q L+G + V+ S+
Sbjct: 75 -LAIGLTGQRLLGVPIIVQASQAE 97
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 54.7 bits (131), Expect = 4e-11
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFG-----KLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65
+++VGGL+ ED++ FE+FG L GF FV F ++ E C+
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE- 59
Query: 66 MNDQDLMGSKLRVE 79
++ ++ + +
Sbjct: 60 IHFHEINNKMVECK 73
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 54.7 bits (131), Expect = 6e-11
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEA 61
+ + V GL+ + DL F K+G + V + ++ GFAFV F N DA+
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66
Query: 62 ACDSMNDQDLMGSKLRV 78
A + N +L G ++RV
Sbjct: 67 AKERANGMELDGRRIRV 83
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.7 bits (131), Expect = 7e-11
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAAC 63
G +++ L + +DL F FG + S V + F FV + N + A+AA
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 77
Query: 64 DSMNDQDLMGSKLRVEISRGRGRGR 88
SMN + +L+V++ R + +
Sbjct: 78 QSMNGFQIGMKRLKVQLKRSKNDSK 102
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 53.5 bits (128), Expect = 1e-10
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPG-----FAFVEFSNQIDAEA 61
E+ ++++GGL+ E L FE++G L V +P F FV ++ + +A
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 62 ACDSMNDQDLMGSKLRVE 79
A + + G + +
Sbjct: 64 AMN-ARPHKVDGRVVEPK 80
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 53.2 bits (127), Expect = 2e-10
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ- 69
++Y+G L+ V +DL F + V G+AFV++ +Q A A ++++ +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQV-LLKSGYAFVDYPDQNWAIRAIETLSGKV 61
Query: 70 DLMGSKLRVEISRGRGR 86
+L G + V+ S +
Sbjct: 62 ELHGKIMEVDYSVSKKL 78
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 52.4 bits (125), Expect = 3e-10
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPG-----FAFVEFSNQIDAEAACDS 65
+++VGG+ E ++ L FE++GK+ + + + FAFV F + D+
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH-DSVDKIVI 62
Query: 66 MNDQDLMGSKLRVEIS 81
+ G V +
Sbjct: 63 QKYHTVNGHNCEVRKA 78
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 53.2 bits (127), Expect = 3e-10
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 3 DGMMERGTR-VYVGGLTETVKKEDLE-----LEFEKFGKLNSVWVAFNPPGFAFVEFSNQ 56
D ++R R V+VG + +E L+ + +L P G+ F E+ +Q
Sbjct: 1 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 60
Query: 57 IDAEAACDSMNDQDLMGSKLRVEIS-----RGRGRGRGGG 91
A +A ++N ++ G LRV+ + + + G G
Sbjct: 61 ETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG 100
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.1 bits (124), Expect = 6e-10
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 5 MMERGTRVYVGGLTETVKKEDLELEFEKFG-----KLNSVWVAFNPPGFAFVEFSNQIDA 59
M +++VGGL+ ++ LE F K+G + GF FV F N DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 60 EAACDSMNDQDLMGSKLRVEISRGRGRGR 88
+ A +MN + + G ++RV+ + R
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNR 89
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 52.4 bits (125), Expect = 6e-10
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACD 64
R++V L+ T +EDLE F +G L+ + + P GFAFV F A A
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 65 SMNDQDLMGSKLRVEISRGRGRGRGGGGRGG 95
++ Q G L V S + G G
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEASQSGPSSG 99
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 51.7 bits (123), Expect = 9e-10
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 9 GTRVYVGGLTETVKKED-LELEFEKFGKLNSVWVAFNPPG------FAFVEFSNQIDAEA 61
G + + L+ + E+ L FE FG + + + AF+ F N+ AE
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 62 ACDSMNDQDLMGSKLRVEISRGR 84
A MN L ++ V ++ +
Sbjct: 64 AL-QMNRSLLGNREISVSLADKK 85
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 51.3 bits (122), Expect = 2e-09
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEAACD 64
T+++VGGL L FE FG + V + G+ FV +++ AE AC
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 65 SMNDQDLMGSKLRVEISRGRGR---GRGGGGRG 94
N + G K V ++ + + G G
Sbjct: 71 DPN-PIIDGRKANVNLAYLGAKPRSLQTGFAIG 102
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 51.3 bits (122), Expect = 2e-09
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 10 TRVYVGGL-TETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMND 68
+ + V L E V + L + F +G + V + FN A V+ ++ A+ A +N
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 62
Query: 69 QDLMGSKLRVEISRGRGRGRGGGGRGGRFDSRGGRG 104
L G +R+ +S+ + G+ + ++
Sbjct: 63 HKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGN 98
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 50.6 bits (120), Expect = 3e-09
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 10 TRVYVGGL-----TETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACD 64
+ + +E+ + E F + K + F + FSN + A A
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FKSFKRVRINFSNPLSAADARL 64
Query: 65 SMNDQDLMGSKLRVEISRGR 84
++ + +G ++++ ++
Sbjct: 65 RLHKTEFLGKEMKLYFAQTL 84
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 50.1 bits (119), Expect = 3e-09
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
+ + V L + +++ + + AFV N A+ A +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYV--DRNKRTAFVTLLNGEQAQNAIQMFHQY 63
Query: 70 DLMGSKLRVEISRGRGRGRGGGGRG 94
G L V++ G G
Sbjct: 64 SFRGKDLIVQLQPTDALLCSGPSSG 88
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 49.8 bits (118), Expect = 6e-09
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEA 61
E +Y+ L+ V + DL F +F + + F G AF+ F N+ A
Sbjct: 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQ 75
Query: 62 ACDSMNDQDLMGSKLRVEISRGR 84
A +N L G L +E + +
Sbjct: 76 ALHLVNGYKLYGKILVIEFGKNK 98
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 51.2 bits (121), Expect = 7e-09
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 1 MSDGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSN 55
G +++VGG+ E ++ L FE++GK+ + + + GFAFV F +
Sbjct: 89 QRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 148
Query: 56 QIDAEAACDSMNDQDLMGSKLRVEISRGR 84
+ + G V + +
Sbjct: 149 HDSVDKIVI-QKYHTVNGHNCEVRKALSK 176
Score = 43.5 bits (101), Expect = 4e-06
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQIDAEA 61
E+ ++++GGL+ E L FE++G L V +P GF FV ++ + +A
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 62 ACDSMN 67
A ++
Sbjct: 64 AMNARP 69
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 47.8 bits (113), Expect = 1e-08
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 12 VYVGGLTETVKKEDLELEFEKFGKLNS-----VWVAFNPPGFAFVEFSNQIDAEAACDSM 66
+Y+ GL +DL + +GK+ S G+ FV+F + A+ A ++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 67 NDQDLMGSKLR 77
+ +
Sbjct: 61 KASGVQAQMAK 71
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 48.2 bits (114), Expect = 2e-08
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 10 TRVYVGGLTETVKKEDLE----LEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65
T +Y+ L ++ +++LE + + G F + EA
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 78
Query: 66 MNDQDLMGSKLRVEISR 82
N + + +
Sbjct: 79 FNGKFIKTPPGVSAPTE 95
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 47.9 bits (113), Expect = 2e-08
Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
+++ L E + L + F +F V + N AFVEF+ ++ + AA +++
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGF 68
Query: 70 DLMGSK-LRVEISR 82
+ + +++ ++
Sbjct: 69 KITPTHAMKITFAK 82
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 47.0 bits (111), Expect = 4e-08
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 8 RGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPG----FAFVEFSNQIDAEAAC 63
+ VY+ G +D++ E G++ ++ + FV F + A+
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV 64
Query: 64 DSMNDQDLMGSKLRVE 79
+ Q + L +
Sbjct: 65 E-TPGQKYKETDLLIL 79
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 46.6 bits (110), Expect = 6e-08
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVA--FNPPGFAFVEFSNQIDAEAACD 64
R+YVG L ++ +D+E F K+G + + + P FAFVEF + DAE A
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVY 71
Query: 65 SMNDQDLMGSKLRVEISRGRGRGRG 89
+ D G +LRVE R GRG G
Sbjct: 72 GRDGYDYDGYRLRVEFPRS-GRGTG 95
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 46.1 bits (109), Expect = 8e-08
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
T V V G + L +F ++G + + N + + + +++ A A S + +
Sbjct: 5 TWVTVFGFPQASASYILL-QFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKAL-SKDGR 61
Query: 70 DLMGSKLRVEISR 82
+ + +
Sbjct: 62 IFGE-SIMIGVKP 73
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 44.9 bits (105), Expect = 2e-07
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 12 VYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQDL 71
+ + GL V +++ + G AFV N AEAA ++ + L
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYE--LKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRL 58
Query: 72 MGSKLRVEISR 82
+L V++
Sbjct: 59 RERELSVQLQP 69
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 45.4 bits (107), Expect = 2e-07
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQ 69
TR++VGGL L EF++FG + ++ FA++++ + A+AAC M
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-VKGDSFAYIQYESLDAAQAACAKMRGF 76
Query: 70 DLMGSKLRVEISRGRGRGRGG 90
L G R+ + + G
Sbjct: 77 PLGGPDRRLRVDFAKSGPSSG 97
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 44.8 bits (105), Expect = 2e-07
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP---GFAFVEFSNQIDAEAACDSM 66
T V V L ++ + + F+ G + V VA + FA +EF+ A A +
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGAL-AAITK 59
Query: 67 NDQDLMGSKLRVE 79
+ + +++ V
Sbjct: 60 THKVVGQNEIIVS 72
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.4 bits (104), Expect = 4e-07
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP----------GFAFVEFSNQIDAE 60
R+YVG + + +E + F +L + A P FAF+EF + +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 61 AACDSMNDQDLMGSKLRVEISRGR 84
A + G L++
Sbjct: 63 QAMA-FDGIIFQGQSLKIRRPHDY 85
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 44.4 bits (104), Expect = 4e-07
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 11 RVYVGGLTETVKKEDLELEFE---KFGKLNSVWVAFNPP--------GFAFVEFSNQIDA 59
V+V GL++ + ++ E KFGK++ V + + A+V + DA
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 60 EAACDSMNDQDLMGSKLRV 78
A +N+ + G L+
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 44.4 bits (104), Expect = 5e-07
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMND 68
RV V GL + +DL+ + G + G VE+ + D E A ++D
Sbjct: 15 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYAD--VQKDGMGMVEYLRKEDMEYALRKLDD 72
Query: 69 QDLMGSKLRVEISRGRGRGRGGGGRG 94
+ R G G
Sbjct: 73 TKFRSHEGETSYIRVYPERSSGPSSG 98
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 44.1 bits (103), Expect = 5e-07
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDSMNDQD 70
RV V GL + +DL+ + G + G VEF + D A +++
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYAD--VYRDGTGVVEFVRKEDMTYAVRKLDNTK 59
Query: 71 LMGSKLRVEISRGRGRGRGGGGRG 94
+ R + G G
Sbjct: 60 FRSHEGETAYIRVKVDGPRSPSYG 83
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 44.3 bits (104), Expect = 6e-07
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 11 RVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPG-----FAFVEFSNQIDAEAACDS 65
++G L V +E ++ F F + EF + +A S
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S 75
Query: 66 MNDQDLMGSKLRVEISRGRGRGRGGGGRG 94
+N++ L ++RV+++ G G
Sbjct: 76 LNEESLGNKRIRVDVADQAQDKDSGPSSG 104
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 43.4 bits (101), Expect = 8e-07
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPG----FAFVEFSNQIDAEAA 62
+++G L +L++ + N + V G F +V+F + D E A
Sbjct: 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKA 70
Query: 63 CDSMNDQDLMGSKLRVEISRGR 84
+ + + G+++++E +GR
Sbjct: 71 LE-LTGLKVFGNEIKLEKPKGR 91
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 42.8 bits (100), Expect = 2e-06
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 12 VYVGGLTE-TVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACD--SMND 68
V++ + L E FG +++ + N AF+E + DA+AA D +
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTP 69
Query: 69 QDLMGSKLRVEISRGRGR 86
+ G +RV +S+ R
Sbjct: 70 ALVFGKPVRVHLSQKYKR 87
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 42.4 bits (99), Expect = 2e-06
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 10 TRVYVGGLTETVKKEDLELEFEKFGKLNSVWV-----AFNPPGFAFVEFSNQIDAEAACD 64
T + V + TV +++ F + + P G A V F ++ +A AA
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 65 SMNDQDLMGSKLRVEI 80
+ND+ + K+++ +
Sbjct: 70 DLNDRPIGSRKVKLVL 85
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 42.5 bits (99), Expect = 3e-06
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 6 MERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAEAACDS 65
+ V+V GL E+V + DL EKFG + V + A VEF N A+
Sbjct: 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-MPFKRQALVEFENIDSAKECVTF 70
Query: 66 MNDQDLM--GSKLRVEISRGRGRGRGGG 91
D + G + S + R G
Sbjct: 71 AADVPVYIAGQQAFFNYSTSKRITRPGN 98
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 41.7 bits (97), Expect = 6e-06
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 12 VYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQI-DAEAACDSMNDQD 70
+ G L + +EDL + F G++ + + F + +A N+ +
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAKEGIILFKEKAKEALGKAKDANNGN 72
Query: 71 LMGSKLRVEISRGRG 85
L V G
Sbjct: 73 LQLRNKEVTWEVLEG 87
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.7 bits (95), Expect = 9e-06
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 23 KEDLELEFEKFGKLNSVWVAFNPP-------GFAFVEFSNQIDAEAACDSMNDQDLMGSK 75
ED+ E K+G + S+ + G FVEF++ D + A + +
Sbjct: 28 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 87
Query: 76 LRVEISR 82
+ +
Sbjct: 88 VVTKYCD 94
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 38.4 bits (88), Expect = 7e-05
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 2 SDGMMERG-TRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPPGFAFVEFSNQIDAE 60
S G R T + L +++ F +FG L V + A VEF ++A
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEAR 60
Query: 61 AACDSMNDQDLMGSKLRVEISR 82
A + L +E +
Sbjct: 61 KAFRHLAYSKFHHVPLYLEWAP 82
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 37.9 bits (87), Expect = 1e-04
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 2 SDGMMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFNPP-----GFAFVEFSNQ 56
S E G VY+ GL + + + F+K + P G FVEF N+
Sbjct: 11 SRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNE 70
Query: 57 IDAEAACDSMNDQDLMGSKLRVEISRGR 84
D +AA + Q + ++V +
Sbjct: 71 ADYKAAL-CRHKQYMGNRFIQVHPITKK 97
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 37.1 bits (85), Expect = 2e-04
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 10/105 (9%)
Query: 5 MMERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDA 59
+ ++ + ++ K D+ E + G A V+F N+ DA
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 63
Query: 60 EAACDSMNDQDLMGSKLRVEISRGRGRGRGGGGRGGRFDSRGGRG 104
+ ++ + L G + V + ++G G
Sbjct: 64 RKSER-LHRKKLNGREAFVHVVTLEDMREIEKNP----PAQGKSG 103
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 36.6 bits (84), Expect = 3e-04
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 9 GTRVYVGGLTETVKKEDLELEFEKFGKLNSVWV---AFNPPGFAFVEFSNQIDAEAACDS 65
G V++ GL + D+ F + G A VEF+ DA AA +
Sbjct: 15 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-A 73
Query: 66 MNDQDLMGSKLRVEISRGRGRGRGGGGRG 94
+ ++ + + ++ G G G
Sbjct: 74 KDKANMQHRYVELFLNSTAGTSGSGPSSG 102
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 33.3 bits (75), Expect = 0.005
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 7 ERGTRVYVGGLTETVKKEDLELEFEKFGKLNSVWVAFN-----PPGFAFVEFSNQIDAEA 61
V + GL KE++ F + + G AFV+F++Q AE
Sbjct: 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEK 72
Query: 62 ACDSMNDQDLMGSKLRVEISRGRGRGRGGGGRG 94
A + + + + + S G G
Sbjct: 73 ALK-KHKERIGHRYIEIFKSSRAEVRTSGPSSG 104
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
thermophilus [TaxId: 274]}
Length = 146
Score = 26.5 bits (58), Expect = 1.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 130 RGRGDGGFRGSRGGGGYRGGRDEYGGGRGGGGYRGGRD 167
GRG G G G++G + GG + + GGR
Sbjct: 15 VGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRS 52
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 24.2 bits (52), Expect = 8.8
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 138 RGSRGGGGYRGGRDEYGGGRGGGGYRGGRDSRGFDGGKPDYYNGG 182
RGSR GG G RGG G GRD F +P +G
Sbjct: 8 RGSRTHGGGSHKNRRGAGHRGGRG-DAGRDKHEFHNHEPLGKSGF 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.149 0.468
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 923,070
Number of extensions: 51286
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 126
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.1 bits)