BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2348
         (131 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3U4H6|HEXDC_MOUSE Hexosaminidase D OS=Mus musculus GN=Hexdc PE=1 SV=1
          Length = 486

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 1   MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDN 57
           M +P+ FK  LVHLDLKGAPP ++YL E+ P+    GA  LLIE+ED  PY         
Sbjct: 1   MSSPTPFKMRLVHLDLKGAPPKVSYLSEVFPLFHALGANGLLIEYEDMFPYEGHLRLLRA 60

Query: 58  TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNAR 117
            + +  +E+  IL  A  + L  IPLV  +  M+FVLK   FA +R+       + P+  
Sbjct: 61  KHAYSPSEVTEILRLARLSELEVIPLVQTFGHMEFVLKHAAFAHLREVALFPNTLNPHEA 120

Query: 118 SSLDLVFKMIGRL 130
            SL LV  MI ++
Sbjct: 121 ESLALVQAMIDQI 133


>sp|Q8WVB3|HEXDC_HUMAN Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3
          Length = 486

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/139 (40%), Positives = 72/139 (51%), Gaps = 15/139 (10%)

Query: 1   MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNP 60
           M   + F+  LVHLDLKGAPP ++YL EI P+    GA  LLIE+ED  PY        P
Sbjct: 1   MSGSTPFQMRLVHLDLKGAPPKVSYLSEIFPLFRALGANGLLIEYEDMFPYE------GP 54

Query: 61  FR---------ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRF 111
            R          +EI  IL  A  N L  IPLV  +  M+FVLK   FA +R+  +    
Sbjct: 55  LRLLRAKYAYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCT 114

Query: 112 ICPNARSSLDLVFKMIGRL 130
           + P+   SL LV  MI ++
Sbjct: 115 LNPHEAESLALVGAMIDQV 133


>sp|A6QNR0|HEXDC_BOVIN Hexosaminidase D OS=Bos taurus GN=HEXDC PE=2 SV=2
          Length = 346

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 11  LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEIF 67
           LVHLDLKGAPP + YL EI P+    GA  +LIE+ED  PY          + +  +EI 
Sbjct: 3   LVHLDLKGAPPKVCYLSEIFPLFRALGANGILIEYEDMFPYEGHLRLLRAKHAYSPSEIK 62

Query: 68  IILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMI 127
            IL  A  N L  IPLV  +  M+FVLK +  A +R+       + P+   SL LV  MI
Sbjct: 63  EILHLATLNELEVIPLVQTFGHMEFVLKHEALAHLREVARFPNTLNPHKEESLALVTAMI 122

Query: 128 GRL 130
            ++
Sbjct: 123 DQV 125


>sp|O74520|YCPE_SCHPO Uncharacterized membrane protein C663.14c OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=SPCC663.14c PE=3 SV=2
          Length = 687

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 21  PSLTYLKEILPILAYTGATSL-----LIEWEDTLPYSLGF 55
           PSL ++ E+L  +A+TGA  +     L+ W     + LGF
Sbjct: 222 PSLQHMGELLQCIAFTGAIGITQPKVLVAWASNFAWILGF 261


>sp|A3LPG0|TRM82_PICST tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
           OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
           6054 / NBRC 10063 / NRRL Y-11545) GN=TRM82 PE=3 SV=2
          Length = 445

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 3   TPSTFKEVLVHLDLKGAPPSLTYLKEIL----PILAYTGATSLLIEWEDTLPYSLGFDNT 58
           T S    ++  +DL      LT +K  +    P    +   +L++  +    YS+G DN 
Sbjct: 130 TDSDKAAIIFKVDLSSEGNCLTLIKRQVFQKRPCAVSSDQETLIVADKFGDVYSIGIDNE 189

Query: 59  NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL 94
            P  E E+  IL       + S  LV  Y+D  F+L
Sbjct: 190 APVDEKELSPILGHV---SMLSDVLVATYNDKKFIL 222


>sp|A7MQG0|PYRB_CROS8 Aspartate carbamoyltransferase OS=Cronobacter sakazakii (strain
           ATCC BAA-894) GN=pyrB PE=3 SV=1
          Length = 311

 Score = 29.6 bits (65), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 24  TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83
           TY+  I+      GA  L  E+   +P     D  N      +  +    E+ G      
Sbjct: 98  TYVDAIVMRHPQEGAARLATEFSGGVPVLNAGDGANQHPTQTLLDLFTIQETQGRLENLT 157

Query: 84  VPLYSDMDFVLKVKEFAKMRQNFNDTR--FICPNA 116
           + +  D+ +   V   A+    FN  R  FI P+A
Sbjct: 158 IAMVGDLKYGRTVHSLAQALAKFNGNRFCFIAPDA 192


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.139    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,186,803
Number of Sequences: 539616
Number of extensions: 1816152
Number of successful extensions: 3748
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3742
Number of HSP's gapped (non-prelim): 7
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)