Query psy2348
Match_columns 131
No_of_seqs 118 out of 493
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:42:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06565 GH20_GcnA-like Glycosy 100.0 5.4E-42 1.2E-46 275.6 13.9 123 9-131 1-127 (301)
2 cd06569 GH20_Sm-chitobiase-lik 100.0 1.2E-38 2.6E-43 268.0 13.3 129 3-131 1-190 (445)
3 cd06568 GH20_SpHex_like A subg 100.0 1.3E-36 2.7E-41 247.3 13.2 125 7-131 1-150 (329)
4 cd06570 GH20_chitobiase-like_1 100.0 1.5E-36 3.3E-41 245.4 13.3 125 7-131 1-143 (311)
5 cd06563 GH20_chitobiase-like T 100.0 1.3E-36 2.9E-41 249.0 11.9 125 7-131 1-161 (357)
6 cd06564 GH20_DspB_LnbB-like Gl 100.0 2.6E-36 5.6E-41 244.5 12.5 124 8-131 1-151 (326)
7 cd06562 GH20_HexA_HexB-like Be 100.0 5.5E-36 1.2E-40 244.9 12.6 125 7-131 1-145 (348)
8 PF00728 Glyco_hydro_20: Glyco 100.0 6.5E-36 1.4E-40 241.4 9.6 124 7-130 1-151 (351)
9 cd02742 GH20_hexosaminidase Be 100.0 3E-35 6.5E-40 236.4 12.0 123 9-131 1-144 (303)
10 KOG2499|consensus 99.9 1.6E-27 3.5E-32 199.8 10.9 130 1-131 175-322 (542)
11 COG3525 Chb N-acetyl-beta-hexo 99.9 1.1E-25 2.5E-30 194.1 9.9 130 1-131 255-422 (732)
12 PF02638 DUF187: Glycosyl hydr 98.4 8.6E-06 1.9E-10 66.2 11.8 123 8-130 1-149 (311)
13 PF14871 GHL6: Hypothetical gl 97.8 0.00039 8.4E-09 50.2 9.9 102 27-130 3-119 (132)
14 COG1649 Uncharacterized protei 97.4 0.0025 5.5E-08 54.0 10.7 124 7-130 45-194 (418)
15 PF02449 Glyco_hydro_42: Beta- 97.0 0.0032 7E-08 51.9 7.7 103 22-130 8-119 (374)
16 PF13200 DUF4015: Putative gly 96.9 0.0079 1.7E-07 49.3 9.1 109 22-130 11-133 (316)
17 PF10566 Glyco_hydro_97: Glyco 96.8 0.0031 6.8E-08 50.7 6.1 108 18-129 26-145 (273)
18 PF00128 Alpha-amylase: Alpha 96.3 0.014 3.1E-07 45.0 6.3 63 23-85 3-73 (316)
19 PRK09441 cytoplasmic alpha-amy 95.9 0.045 9.7E-07 46.7 8.3 80 11-91 9-107 (479)
20 smart00642 Aamy Alpha-amylase 95.8 0.069 1.5E-06 39.6 7.9 72 20-92 15-97 (166)
21 PRK01060 endonuclease IV; Prov 95.3 0.14 3.1E-06 40.0 8.3 61 9-80 3-63 (281)
22 PF00150 Cellulase: Cellulase 95.1 0.1 2.2E-06 40.0 6.9 72 8-87 9-85 (281)
23 PRK05402 glycogen branching en 94.3 0.18 4E-06 45.4 7.6 69 21-90 262-340 (726)
24 PRK12313 glycogen branching en 94.3 0.2 4.3E-06 44.4 7.6 106 21-127 167-294 (633)
25 TIGR01515 branching_enzym alph 94.2 0.21 4.5E-06 44.2 7.5 105 23-128 155-281 (613)
26 COG0296 GlgB 1,4-alpha-glucan 94.2 0.2 4.4E-06 44.7 7.4 70 22-92 163-241 (628)
27 PLN00196 alpha-amylase; Provis 94.2 0.35 7.5E-06 41.2 8.5 68 22-91 42-118 (428)
28 PF01212 Beta_elim_lyase: Beta 94.2 0.29 6.2E-06 39.5 7.7 64 14-81 98-162 (290)
29 TIGR02403 trehalose_treC alpha 94.1 0.26 5.7E-06 42.9 7.9 69 20-91 23-101 (543)
30 TIGR02402 trehalose_TreZ malto 93.9 0.28 6.2E-06 42.8 7.6 104 22-127 109-229 (542)
31 PRK14706 glycogen branching en 93.8 0.26 5.6E-06 44.0 7.3 107 20-127 163-291 (639)
32 PLN02784 alpha-amylase 93.6 0.47 1E-05 43.9 8.8 81 10-92 507-595 (894)
33 PLN02361 alpha-amylase 93.4 0.4 8.6E-06 40.6 7.5 77 11-90 17-101 (401)
34 smart00518 AP2Ec AP endonuclea 93.3 0.63 1.4E-05 36.1 8.1 60 11-81 3-62 (273)
35 KOG0470|consensus 93.1 0.14 3E-06 46.3 4.5 112 15-127 239-387 (757)
36 PRK09505 malS alpha-amylase; R 92.9 0.56 1.2E-05 42.3 8.0 69 22-91 228-318 (683)
37 PF13199 Glyco_hydro_66: Glyco 92.8 0.32 6.8E-06 42.9 6.2 93 2-95 97-201 (559)
38 TIGR02100 glgX_debranch glycog 92.6 0.27 5.9E-06 44.2 5.7 99 29-128 189-327 (688)
39 PF07555 NAGidase: beta-N-acet 92.3 0.77 1.7E-05 37.5 7.5 65 18-85 9-77 (306)
40 PRK12568 glycogen branching en 92.2 0.67 1.5E-05 42.1 7.6 70 20-92 265-346 (730)
41 PRK10785 maltodextrin glucosid 92.1 0.73 1.6E-05 40.7 7.6 69 22-91 177-252 (598)
42 PLN02447 1,4-alpha-glucan-bran 92.0 0.66 1.4E-05 42.3 7.4 102 26-128 253-376 (758)
43 PRK14511 maltooligosyl trehalo 92.0 0.99 2.1E-05 41.9 8.5 66 19-84 15-89 (879)
44 PRK15452 putative protease; Pr 92.0 0.93 2E-05 38.8 8.0 63 22-93 12-75 (443)
45 PRK14705 glycogen branching en 91.9 0.65 1.4E-05 44.4 7.4 99 26-127 768-889 (1224)
46 TIGR02401 trehalose_TreY malto 91.6 1.1 2.5E-05 41.2 8.5 73 18-91 10-91 (825)
47 TIGR02456 treS_nterm trehalose 91.3 0.99 2.2E-05 39.2 7.5 68 20-90 24-101 (539)
48 PRK10933 trehalose-6-phosphate 91.2 1 2.3E-05 39.4 7.6 70 21-91 30-107 (551)
49 TIGR02104 pulA_typeI pullulana 91.2 0.44 9.6E-06 42.0 5.3 104 24-128 164-305 (605)
50 PLN02591 tryptophan synthase 91.0 0.86 1.9E-05 36.2 6.3 35 61-95 115-152 (250)
51 PF02065 Melibiase: Melibiase; 90.9 0.96 2.1E-05 38.2 6.9 109 19-130 53-178 (394)
52 PF02679 ComA: (2R)-phospho-3- 90.9 0.52 1.1E-05 37.5 5.0 49 26-85 86-134 (244)
53 PF14488 DUF4434: Domain of un 90.9 2.9 6.4E-05 31.0 8.8 69 19-87 15-88 (166)
54 COG1874 LacA Beta-galactosidas 90.9 1.8 4E-05 39.0 8.9 102 24-130 30-141 (673)
55 PLN02960 alpha-amylase 90.8 1 2.2E-05 41.8 7.4 107 20-127 412-541 (897)
56 TIGR03849 arch_ComA phosphosul 90.7 1.1 2.3E-05 35.5 6.6 27 60-86 96-122 (237)
57 PF02836 Glyco_hydro_2_C: Glyc 90.7 0.64 1.4E-05 36.9 5.4 58 17-91 29-86 (298)
58 PRK13111 trpA tryptophan synth 90.2 1 2.3E-05 35.8 6.2 25 61-85 126-150 (258)
59 PRK14510 putative bifunctional 90.0 0.82 1.8E-05 43.7 6.2 100 28-128 191-329 (1221)
60 TIGR00674 dapA dihydrodipicoli 89.6 4 8.7E-05 32.4 9.1 102 20-129 15-122 (285)
61 PRK03170 dihydrodipicolinate s 88.8 5 0.00011 31.8 9.2 61 20-88 18-81 (292)
62 KOG3698|consensus 88.7 0.42 9.2E-06 42.6 3.1 65 18-84 27-94 (891)
63 PRK03705 glycogen debranching 88.5 1.1 2.3E-05 40.3 5.6 99 29-128 184-322 (658)
64 TIGR02313 HpaI-NOT-DapA 2,4-di 88.5 5 0.00011 32.2 9.0 101 21-129 18-124 (294)
65 PTZ00372 endonuclease 4-like p 88.5 4.4 9.5E-05 34.6 9.0 72 9-94 132-203 (413)
66 cd01299 Met_dep_hydrolase_A Me 88.1 4.9 0.00011 32.0 8.8 76 20-95 116-191 (342)
67 cd00950 DHDPS Dihydrodipicolin 88.1 5.8 0.00013 31.2 9.1 58 20-85 17-77 (284)
68 PRK14582 pgaB outer membrane N 87.4 14 0.00029 33.6 11.8 118 7-130 312-453 (671)
69 PF01301 Glyco_hydro_35: Glyco 87.3 1.4 2.9E-05 36.0 5.2 58 23-83 23-82 (319)
70 cd00408 DHDPS-like Dihydrodipi 87.2 7.8 0.00017 30.4 9.3 101 20-129 14-121 (281)
71 PLN02417 dihydrodipicolinate s 87.0 7.3 0.00016 30.9 9.1 101 20-128 18-124 (280)
72 CHL00200 trpA tryptophan synth 86.8 2.1 4.6E-05 34.1 5.9 28 61-88 128-155 (263)
73 cd00954 NAL N-Acetylneuraminic 86.7 11 0.00023 30.0 9.9 100 21-129 18-125 (288)
74 PF14542 Acetyltransf_CG: GCN5 86.4 0.62 1.3E-05 30.3 2.2 41 59-102 37-78 (78)
75 TIGR00542 hxl6Piso_put hexulos 86.3 1.2 2.6E-05 34.8 4.2 60 23-83 93-152 (279)
76 PF05913 DUF871: Bacterial pro 86.2 2.4 5.2E-05 35.4 6.1 64 11-85 3-68 (357)
77 PRK13210 putative L-xylulose 5 86.1 2.3 5E-05 33.0 5.7 60 19-82 11-70 (284)
78 PRK10076 pyruvate formate lyas 86.0 5.7 0.00012 30.6 7.7 61 21-81 142-210 (213)
79 PRK14507 putative bifunctional 85.4 4.4 9.5E-05 40.2 8.2 73 18-91 752-833 (1693)
80 PRK15447 putative protease; Pr 84.9 6.7 0.00014 31.7 8.0 66 22-94 13-82 (301)
81 PRK04147 N-acetylneuraminate l 84.8 11 0.00025 29.9 9.3 58 21-86 21-82 (293)
82 cd04724 Tryptophan_synthase_al 84.6 3.9 8.4E-05 31.9 6.3 24 63-86 115-138 (242)
83 PRK13125 trpA tryptophan synth 84.3 6.1 0.00013 30.7 7.4 61 23-95 87-150 (244)
84 TIGR02109 PQQ_syn_pqqE coenzym 84.3 3.1 6.6E-05 33.8 5.9 59 18-90 34-92 (358)
85 TIGR03234 OH-pyruv-isom hydrox 84.2 5.8 0.00013 30.4 7.1 60 23-83 83-142 (254)
86 COG1313 PflX Uncharacterized F 84.1 2.9 6.3E-05 34.4 5.5 54 27-82 274-333 (335)
87 TIGR00587 nfo apurinic endonuc 84.0 6.4 0.00014 31.0 7.4 69 10-92 3-71 (274)
88 PRK05301 pyrroloquinoline quin 83.9 4 8.7E-05 33.5 6.4 59 18-90 43-101 (378)
89 PF01261 AP_endonuc_2: Xylose 83.4 1 2.2E-05 32.7 2.5 62 23-85 70-133 (213)
90 TIGR02102 pullulan_Gpos pullul 83.4 5 0.00011 38.3 7.5 107 21-128 477-628 (1111)
91 TIGR00262 trpA tryptophan synt 83.3 4.4 9.6E-05 32.0 6.2 28 61-88 124-151 (256)
92 TIGR00683 nanA N-acetylneurami 82.8 15 0.00032 29.4 9.1 100 21-129 18-125 (290)
93 PRK09856 fructoselysine 3-epim 82.7 4.9 0.00011 31.1 6.2 51 25-81 14-64 (275)
94 cd00019 AP2Ec AP endonuclease 82.5 6.8 0.00015 30.5 7.0 53 24-81 10-63 (279)
95 PF00155 Aminotran_1_2: Aminot 82.2 5.5 0.00012 31.7 6.5 60 17-81 126-185 (363)
96 PF13380 CoA_binding_2: CoA bi 81.9 2 4.4E-05 29.8 3.4 53 13-82 55-108 (116)
97 cd00951 KDGDH 5-dehydro-4-deox 81.9 17 0.00038 28.9 9.2 66 20-95 17-85 (289)
98 PF01055 Glyco_hydro_31: Glyco 81.7 5 0.00011 33.6 6.3 121 5-130 26-165 (441)
99 PF03102 NeuB: NeuB family; I 81.3 6 0.00013 31.2 6.2 67 29-95 1-87 (241)
100 COG0134 TrpC Indole-3-glycerol 81.3 1.9 4.2E-05 34.4 3.5 86 10-96 46-175 (254)
101 PLN02877 alpha-amylase/limit d 81.1 4.7 0.0001 37.9 6.3 27 63-90 465-491 (970)
102 PRK07998 gatY putative fructos 81.1 5.9 0.00013 32.1 6.2 62 10-87 77-138 (283)
103 PRK13957 indole-3-glycerol-pho 81.0 6.1 0.00013 31.4 6.2 53 31-96 118-170 (247)
104 TIGR01866 cas_Csn2 CRISPR-asso 81.0 3.6 7.9E-05 32.1 4.8 64 7-81 132-195 (216)
105 PF07905 PucR: Purine cataboli 80.6 8.7 0.00019 26.7 6.3 52 23-90 58-109 (123)
106 COG0366 AmyA Glycosidases [Car 80.5 7.8 0.00017 32.2 7.1 74 20-93 25-108 (505)
107 COG0826 Collagenase and relate 80.3 2.8 6E-05 34.9 4.2 37 59-95 44-80 (347)
108 PLN02607 1-aminocyclopropane-1 80.1 17 0.00037 30.8 9.0 56 21-81 182-237 (447)
109 KOG4175|consensus 80.0 6 0.00013 31.2 5.7 25 61-85 132-156 (268)
110 TIGR03586 PseI pseudaminic aci 79.9 6.2 0.00013 32.6 6.1 79 18-96 11-109 (327)
111 PRK13209 L-xylulose 5-phosphat 79.8 7.2 0.00016 30.3 6.3 54 25-82 22-75 (283)
112 PRK09856 fructoselysine 3-epim 79.6 11 0.00023 29.2 7.1 57 23-83 89-148 (275)
113 PF00701 DHDPS: Dihydrodipicol 79.1 11 0.00025 29.7 7.3 101 20-128 18-124 (289)
114 PRK04302 triosephosphate isome 79.1 9.1 0.0002 29.3 6.5 34 60-93 97-130 (223)
115 COG0159 TrpA Tryptophan syntha 78.7 7 0.00015 31.5 5.9 25 61-85 131-155 (265)
116 cd00953 KDG_aldolase KDG (2-ke 78.5 25 0.00053 27.9 9.0 59 20-86 16-74 (279)
117 PRK10150 beta-D-glucuronidase; 78.4 8 0.00017 34.0 6.7 55 17-88 306-360 (604)
118 PLN02161 beta-amylase 78.1 12 0.00026 33.0 7.4 64 19-87 112-177 (531)
119 PLN02803 beta-amylase 78.0 14 0.00029 32.8 7.8 64 18-86 101-166 (548)
120 TIGR03249 KdgD 5-dehydro-4-deo 77.9 28 0.00061 27.7 9.2 66 20-95 22-90 (296)
121 TIGR02631 xylA_Arthro xylose i 77.7 7 0.00015 32.8 5.9 63 15-81 22-85 (382)
122 PRK13398 3-deoxy-7-phosphohept 77.5 22 0.00048 28.4 8.5 71 21-96 38-110 (266)
123 PRK03620 5-dehydro-4-deoxygluc 77.5 30 0.00064 27.8 9.3 100 20-129 24-130 (303)
124 PRK13604 luxD acyl transferase 77.4 21 0.00045 29.3 8.4 76 16-94 43-120 (307)
125 PF01565 FAD_binding_4: FAD bi 77.2 3.4 7.3E-05 28.7 3.3 24 61-84 8-31 (139)
126 PF00218 IGPS: Indole-3-glycer 77.1 7.7 0.00017 30.9 5.7 56 28-96 122-177 (254)
127 COG0436 Aspartate/tyrosine/aro 77.1 3 6.4E-05 34.9 3.5 26 57-82 176-201 (393)
128 TIGR00542 hxl6Piso_put hexulos 77.1 9.7 0.00021 29.7 6.3 55 24-82 16-70 (279)
129 TIGR03356 BGL beta-galactosida 76.6 9.5 0.00021 32.3 6.5 61 23-88 53-118 (427)
130 PRK10558 alpha-dehydro-beta-de 76.5 11 0.00024 29.8 6.4 60 29-99 32-115 (256)
131 PLN02801 beta-amylase 76.1 17 0.00037 32.0 7.8 64 18-86 31-96 (517)
132 TIGR03852 sucrose_gtfA sucrose 75.3 6.4 0.00014 34.1 5.1 71 12-85 156-232 (470)
133 KOG0259|consensus 75.2 3.5 7.6E-05 35.2 3.4 35 57-92 212-246 (447)
134 COG1523 PulA Type II secretory 75.1 11 0.00024 34.3 6.7 97 30-127 206-344 (697)
135 PF07745 Glyco_hydro_53: Glyco 74.9 13 0.00029 30.7 6.7 52 27-84 27-78 (332)
136 PLN00197 beta-amylase; Provisi 74.4 19 0.00041 32.0 7.8 64 18-86 121-186 (573)
137 PLN02721 threonine aldolase 74.4 14 0.00031 29.1 6.7 58 21-82 118-176 (353)
138 TIGR02668 moaA_archaeal probab 74.2 11 0.00023 29.9 5.9 60 18-90 37-96 (302)
139 PRK12677 xylose isomerase; Pro 73.9 13 0.00029 31.1 6.6 60 26-89 33-93 (384)
140 TIGR01418 PEP_synth phosphoeno 73.7 13 0.00028 34.1 6.9 115 2-130 590-731 (782)
141 PLN02705 beta-amylase 73.7 19 0.00041 32.5 7.6 65 18-87 262-328 (681)
142 TIGR03239 GarL 2-dehydro-3-deo 73.5 16 0.00034 28.8 6.6 36 63-100 74-109 (249)
143 PRK08208 coproporphyrinogen II 73.0 9.6 0.00021 32.2 5.6 64 28-92 142-208 (430)
144 PF01373 Glyco_hydro_14: Glyco 72.9 5.8 0.00013 33.8 4.2 66 14-84 6-73 (402)
145 PRK08195 4-hyroxy-2-oxovalerat 72.8 18 0.0004 29.7 7.1 47 19-76 139-185 (337)
146 PRK10340 ebgA cryptic beta-D-g 72.8 14 0.00031 34.9 7.1 57 17-90 348-404 (1021)
147 PRK13209 L-xylulose 5-phosphat 72.8 5.3 0.00011 31.1 3.8 59 23-84 98-158 (283)
148 PRK12737 gatY tagatose-bisphos 72.7 17 0.00037 29.4 6.8 68 20-88 56-139 (284)
149 COG3977 Alanine-alpha-ketoisov 72.4 4.1 9E-05 34.0 3.1 25 57-81 192-216 (417)
150 PF12696 TraG-D_C: TraM recogn 72.3 6.3 0.00014 27.3 3.7 70 60-129 12-81 (128)
151 cd00952 CHBPH_aldolase Trans-o 72.1 40 0.00087 27.2 8.8 47 20-74 25-71 (309)
152 cd00308 enolase_like Enolase-s 72.0 30 0.00064 26.3 7.7 70 10-84 95-203 (229)
153 PLN02376 1-aminocyclopropane-1 71.9 48 0.001 28.6 9.7 65 10-81 167-236 (496)
154 PLN02231 alanine transaminase 71.9 38 0.00083 29.5 9.2 66 11-81 242-308 (534)
155 cd03174 DRE_TIM_metallolyase D 71.7 28 0.00061 26.6 7.6 53 15-78 137-189 (265)
156 PF00290 Trp_syntA: Tryptophan 71.7 6.6 0.00014 31.4 4.1 55 26-95 104-161 (259)
157 PRK09997 hydroxypyruvate isome 71.6 20 0.00044 27.6 6.8 58 23-83 84-143 (258)
158 TIGR00433 bioB biotin syntheta 71.4 9.1 0.0002 30.1 4.8 52 28-83 124-177 (296)
159 TIGR03569 NeuB_NnaB N-acetylne 71.4 15 0.00033 30.3 6.3 82 15-96 6-108 (329)
160 PRK08636 aspartate aminotransf 71.3 5.4 0.00012 32.8 3.7 26 56-81 187-212 (403)
161 PRK09852 cryptic 6-phospho-bet 71.1 11 0.00024 32.6 5.6 67 24-91 71-142 (474)
162 PRK13210 putative L-xylulose 5 71.1 6.6 0.00014 30.4 3.9 59 23-84 93-153 (284)
163 PRK05942 aspartate aminotransf 70.9 5.6 0.00012 32.6 3.6 25 57-81 183-207 (394)
164 cd06592 GH31_glucosidase_KIAA1 70.1 55 0.0012 26.2 9.8 109 18-130 24-150 (303)
165 TIGR01210 conserved hypothetic 70.0 10 0.00023 30.7 5.0 55 28-83 118-174 (313)
166 PRK12738 kbaY tagatose-bisphos 69.7 22 0.00048 28.8 6.7 25 64-88 115-139 (286)
167 COG1168 MalY Bifunctional PLP- 69.6 6.2 0.00014 33.4 3.6 26 57-82 171-196 (388)
168 PRK10128 2-keto-3-deoxy-L-rham 69.4 22 0.00048 28.4 6.6 56 29-95 31-110 (267)
169 TIGR02455 TreS_stutzeri trehal 69.4 32 0.00069 31.4 8.2 67 28-95 78-164 (688)
170 PF04476 DUF556: Protein of un 69.3 16 0.00034 29.0 5.6 48 28-80 135-183 (235)
171 PLN02368 alanine transaminase 69.2 6.5 0.00014 32.9 3.7 57 20-81 191-247 (407)
172 KOG0462|consensus 69.1 3.2 6.9E-05 37.0 1.9 33 61-93 91-139 (650)
173 PLN02905 beta-amylase 69.1 28 0.00061 31.6 7.7 64 18-86 280-345 (702)
174 TIGR03542 DAPAT_plant LL-diami 69.0 6.3 0.00014 32.4 3.6 25 57-81 186-210 (402)
175 cd00947 TBP_aldolase_IIB Tagat 68.8 27 0.00059 28.1 7.1 25 64-88 110-134 (276)
176 cd07943 DRE_TIM_HOA 4-hydroxy- 68.7 19 0.00042 28.1 6.2 45 21-76 138-182 (263)
177 cd07944 DRE_TIM_HOA_like 4-hyd 68.7 37 0.00081 26.8 7.8 43 22-75 136-178 (266)
178 TIGR03217 4OH_2_O_val_ald 4-hy 68.1 21 0.00046 29.3 6.5 47 19-76 138-184 (333)
179 PRK15014 6-phospho-beta-glucos 68.1 14 0.0003 32.0 5.6 65 24-92 69-141 (477)
180 PRK06552 keto-hydroxyglutarate 67.4 37 0.00081 26.1 7.4 75 22-96 23-128 (213)
181 PF07582 AP_endonuc_2_N: AP en 67.3 5.5 0.00012 24.5 2.2 23 26-48 2-25 (55)
182 PRK07366 succinyldiaminopimela 67.2 7.2 0.00016 31.7 3.5 25 57-81 178-202 (388)
183 COG1385 Uncharacterized protei 66.7 18 0.00039 28.6 5.6 85 12-100 78-166 (246)
184 TIGR00387 glcD glycolate oxida 66.6 6.1 0.00013 33.1 3.1 24 60-83 4-27 (413)
185 PRK09147 succinyldiaminopimela 66.5 7.5 0.00016 31.8 3.5 26 56-81 178-203 (396)
186 PF01116 F_bP_aldolase: Fructo 66.4 27 0.00058 28.2 6.6 62 11-88 77-138 (287)
187 PRK06348 aspartate aminotransf 66.4 7.8 0.00017 31.6 3.6 53 18-81 147-199 (384)
188 PRK08068 transaminase; Reviewe 66.3 7.8 0.00017 31.6 3.6 26 56-81 179-204 (389)
189 TIGR03538 DapC_gpp succinyldia 66.2 7.1 0.00015 31.9 3.3 51 20-81 152-202 (393)
190 cd07939 DRE_TIM_NifV Streptomy 66.2 24 0.00051 27.6 6.2 45 21-76 136-180 (259)
191 TIGR02103 pullul_strch alpha-1 66.1 16 0.00034 34.2 5.8 27 64-91 404-430 (898)
192 cd03319 L-Ala-DL-Glu_epimerase 66.0 38 0.00083 27.0 7.5 68 11-83 179-285 (316)
193 PLN02849 beta-glucosidase 65.8 21 0.00046 31.1 6.3 66 22-92 77-150 (503)
194 PRK09082 methionine aminotrans 65.8 7.7 0.00017 31.6 3.5 25 57-81 176-200 (386)
195 PF02606 LpxK: Tetraacyldisacc 65.8 15 0.00033 30.1 5.2 42 27-77 240-281 (326)
196 PRK07590 L,L-diaminopimelate a 65.6 7.6 0.00017 32.0 3.4 25 57-81 189-213 (409)
197 COG0041 PurE Phosphoribosylcar 65.4 16 0.00034 27.4 4.7 53 18-82 10-62 (162)
198 PRK06464 phosphoenolpyruvate s 65.4 31 0.00068 31.8 7.5 115 2-130 597-738 (795)
199 PRK09195 gatY tagatose-bisphos 65.3 35 0.00076 27.6 7.1 25 64-88 115-139 (284)
200 cd06603 GH31_GANC_GANAB_alpha 65.3 36 0.00078 27.7 7.3 109 17-130 17-145 (339)
201 COG0277 GlcD FAD/FMN-containin 65.2 7.1 0.00015 32.4 3.2 24 60-83 38-61 (459)
202 cd00617 Tnase_like Tryptophana 65.1 8.2 0.00018 32.9 3.6 52 21-81 136-190 (431)
203 PRK05957 aspartate aminotransf 64.9 8.9 0.00019 31.4 3.7 25 57-81 173-197 (389)
204 PRK09427 bifunctional indole-3 64.8 9.6 0.00021 32.8 4.0 38 59-96 141-178 (454)
205 PRK13802 bifunctional indole-3 64.7 16 0.00036 33.2 5.5 38 59-96 142-179 (695)
206 PLN02951 Molybderin biosynthes 64.6 29 0.00063 28.8 6.7 60 18-90 87-147 (373)
207 COG2723 BglB Beta-glucosidase/ 64.5 30 0.00064 30.1 6.8 56 24-83 59-119 (460)
208 PRK13361 molybdenum cofactor b 64.5 23 0.00049 28.7 5.9 60 18-90 42-102 (329)
209 cd00331 IGPS Indole-3-glycerol 64.2 31 0.00068 25.9 6.4 37 60-96 104-140 (217)
210 PRK09276 LL-diaminopimelate am 64.1 9.6 0.00021 30.9 3.7 25 57-81 179-203 (385)
211 PRK07681 aspartate aminotransf 64.1 9 0.0002 31.4 3.6 26 56-81 178-203 (399)
212 PRK08175 aminotransferase; Val 64.0 9.4 0.0002 31.2 3.7 25 57-81 177-201 (395)
213 KOG0464|consensus 63.9 4.5 9.8E-05 35.3 1.8 33 64-96 74-119 (753)
214 PRK14042 pyruvate carboxylase 63.9 51 0.0011 29.5 8.4 95 18-126 148-249 (596)
215 PRK08610 fructose-bisphosphate 63.8 18 0.00039 29.3 5.2 31 58-88 108-142 (286)
216 PLN00145 tyrosine/nicotianamin 63.7 9.8 0.00021 31.9 3.8 25 57-81 203-227 (430)
217 PTZ00377 alanine aminotransfer 63.7 9.7 0.00021 32.3 3.8 57 20-81 199-255 (481)
218 PRK08446 coproporphyrinogen II 63.7 24 0.00053 28.8 6.0 60 29-91 100-164 (350)
219 smart00481 POLIIIAc DNA polyme 63.6 23 0.00051 21.5 4.7 48 25-86 16-63 (67)
220 PF01261 AP_endonuc_2: Xylose 63.5 6.9 0.00015 28.2 2.6 44 30-81 1-44 (213)
221 PRK00278 trpC indole-3-glycero 63.3 28 0.0006 27.5 6.1 54 29-95 125-178 (260)
222 PLN02450 1-aminocyclopropane-1 63.3 9.1 0.0002 32.6 3.5 57 20-81 172-228 (468)
223 PRK07309 aromatic amino acid a 63.3 9.9 0.00022 31.1 3.7 25 57-81 179-203 (391)
224 PRK05628 coproporphyrinogen II 63.2 19 0.00041 29.6 5.3 48 29-79 110-159 (375)
225 PRK07337 aminotransferase; Val 63.2 10 0.00022 30.8 3.7 25 57-81 176-200 (388)
226 PRK08960 hypothetical protein; 63.1 10 0.00022 30.9 3.7 26 56-81 177-202 (387)
227 PRK09589 celA 6-phospho-beta-g 63.1 29 0.00063 29.9 6.6 65 23-91 66-138 (476)
228 COG2008 GLY1 Threonine aldolas 62.8 7.2 0.00016 32.5 2.7 23 58-80 144-166 (342)
229 KOG0256|consensus 62.5 59 0.0013 28.2 8.1 65 11-82 197-264 (471)
230 PLN02187 rooty/superroot1 62.4 10 0.00023 32.1 3.7 25 57-81 217-241 (462)
231 PRK12857 fructose-1,6-bisphosp 62.4 21 0.00046 28.8 5.4 62 11-88 78-139 (284)
232 PRK06207 aspartate aminotransf 62.3 11 0.00023 31.2 3.7 26 56-81 190-215 (405)
233 PRK06358 threonine-phosphate d 62.2 11 0.00024 30.5 3.7 25 57-81 154-178 (354)
234 TIGR03540 DapC_direct LL-diami 62.2 9.7 0.00021 30.9 3.4 25 57-81 177-201 (383)
235 KOG1232|consensus 62.2 5.5 0.00012 34.1 2.0 24 60-83 96-119 (511)
236 PRK08354 putative aminotransfe 62.0 10 0.00022 30.0 3.4 26 56-81 129-154 (311)
237 PRK09440 avtA valine--pyruvate 62.0 10 0.00022 31.2 3.5 26 56-81 191-216 (416)
238 PLN02656 tyrosine transaminase 62.0 11 0.00024 31.1 3.8 25 57-81 182-206 (409)
239 PRK09265 aminotransferase AlaT 62.0 11 0.00024 30.9 3.7 25 57-81 181-205 (404)
240 PRK07379 coproporphyrinogen II 62.0 20 0.00043 30.0 5.3 49 28-79 116-166 (400)
241 PRK02308 uvsE putative UV dama 61.9 38 0.00082 27.5 6.8 54 26-81 50-108 (303)
242 PRK06108 aspartate aminotransf 61.9 11 0.00023 30.4 3.6 25 57-81 171-195 (382)
243 PRK05718 keto-hydroxyglutarate 61.7 52 0.0011 25.4 7.2 75 21-95 24-126 (212)
244 PF00232 Glyco_hydro_1: Glycos 61.7 13 0.00027 31.7 4.1 64 24-91 58-129 (455)
245 PRK12677 xylose isomerase; Pro 61.7 11 0.00024 31.6 3.7 74 22-95 112-201 (384)
246 PRK13238 tnaA tryptophanase/L- 61.6 10 0.00023 32.3 3.6 34 58-91 192-226 (460)
247 PRK06225 aspartate aminotransf 61.5 11 0.00024 30.5 3.7 25 57-81 170-194 (380)
248 PRK09525 lacZ beta-D-galactosi 61.3 29 0.00063 32.9 6.7 57 17-90 364-420 (1027)
249 cd07944 DRE_TIM_HOA_like 4-hyd 61.3 64 0.0014 25.5 7.9 31 61-91 135-165 (266)
250 PTZ00376 aspartate aminotransf 61.2 12 0.00025 30.9 3.7 25 57-81 189-213 (404)
251 cd00019 AP2Ec AP endonuclease 61.1 6.9 0.00015 30.5 2.3 71 22-95 83-163 (279)
252 PRK06855 aminotransferase; Val 61.1 11 0.00025 31.4 3.7 26 56-81 183-208 (433)
253 COG2100 Predicted Fe-S oxidore 60.8 20 0.00043 30.3 4.9 27 55-81 233-259 (414)
254 PRK05839 hypothetical protein; 60.7 11 0.00024 30.7 3.5 25 57-81 168-192 (374)
255 TIGR03470 HpnH hopanoid biosyn 60.7 40 0.00087 27.2 6.8 53 21-75 175-227 (318)
256 PRK07084 fructose-bisphosphate 60.5 22 0.00048 29.4 5.2 24 64-87 126-149 (321)
257 PRK08912 hypothetical protein; 60.5 11 0.00024 30.6 3.5 25 57-81 172-196 (387)
258 TIGR03537 DapC succinyldiamino 60.5 12 0.00025 30.1 3.6 25 57-81 149-173 (350)
259 PLN00143 tyrosine/nicotianamin 60.3 12 0.00026 31.0 3.7 26 56-81 182-207 (409)
260 TIGR03471 HpnJ hopanoid biosyn 60.2 19 0.00041 30.6 5.0 65 27-92 287-353 (472)
261 PF00682 HMGL-like: HMGL-like 60.2 30 0.00066 26.2 5.7 33 60-92 133-165 (237)
262 TIGR02026 BchE magnesium-proto 60.1 16 0.00035 31.4 4.5 62 27-89 287-350 (497)
263 PF07071 DUF1341: Protein of u 60.1 46 0.00099 26.1 6.5 46 26-82 137-182 (218)
264 PRK13355 bifunctional HTH-doma 59.9 12 0.00026 32.1 3.7 25 57-81 294-318 (517)
265 PRK11145 pflA pyruvate formate 59.8 59 0.0013 24.8 7.3 57 24-89 148-208 (246)
266 TIGR01858 tag_bisphos_ald clas 59.7 46 0.001 26.9 6.8 77 11-87 42-136 (282)
267 PRK06425 histidinol-phosphate 59.4 13 0.00028 29.7 3.6 25 57-81 135-159 (332)
268 PRK02227 hypothetical protein; 59.3 28 0.00061 27.6 5.4 47 28-79 135-182 (238)
269 TIGR03128 RuMP_HxlA 3-hexulose 59.3 38 0.00081 25.1 6.0 47 29-89 68-114 (206)
270 cd03174 DRE_TIM_metallolyase D 59.3 50 0.0011 25.2 6.8 61 23-92 114-174 (265)
271 PRK11230 glycolate oxidase sub 59.2 10 0.00022 32.9 3.2 24 60-83 62-85 (499)
272 PRK13511 6-phospho-beta-galact 59.1 34 0.00074 29.4 6.3 63 24-91 54-124 (469)
273 PRK07865 N-succinyldiaminopime 58.7 14 0.0003 29.8 3.7 25 57-81 161-185 (364)
274 PF03851 UvdE: UV-endonuclease 58.6 35 0.00076 27.6 6.0 57 24-81 45-104 (275)
275 cd06604 GH31_glucosidase_II_Ma 58.5 68 0.0015 26.0 7.8 109 17-130 17-145 (339)
276 PRK04296 thymidine kinase; Pro 58.5 13 0.00027 27.7 3.2 25 58-82 87-111 (190)
277 PRK08599 coproporphyrinogen II 58.5 25 0.00054 28.9 5.3 23 59-81 131-153 (377)
278 PRK07709 fructose-bisphosphate 58.4 26 0.00055 28.4 5.2 67 21-88 58-142 (285)
279 PRK05904 coproporphyrinogen II 58.4 26 0.00056 28.9 5.3 49 28-79 104-154 (353)
280 TIGR00539 hemN_rel putative ox 58.1 31 0.00068 28.2 5.7 33 60-92 132-167 (360)
281 cd07940 DRE_TIM_IPMS 2-isoprop 58.1 40 0.00087 26.4 6.2 32 60-91 139-170 (268)
282 PRK13347 coproporphyrinogen II 58.0 20 0.00043 30.5 4.7 21 59-79 183-203 (453)
283 TIGR00629 uvde UV damage endon 57.9 19 0.00042 29.6 4.4 56 25-81 53-111 (312)
284 PRK13505 formate--tetrahydrofo 57.7 43 0.00093 29.8 6.7 47 24-81 359-405 (557)
285 TIGR01233 lacG 6-phospho-beta- 57.5 38 0.00081 29.2 6.3 63 23-90 52-122 (467)
286 COG3589 Uncharacterized conser 57.5 42 0.00091 28.2 6.3 67 10-85 4-70 (360)
287 PRK06294 coproporphyrinogen II 57.5 28 0.00061 28.7 5.4 49 28-79 104-154 (370)
288 PTZ00433 tyrosine aminotransfe 57.4 14 0.00029 30.6 3.5 25 57-81 190-214 (412)
289 TIGR01264 tyr_amTase_E tyrosin 57.4 15 0.00032 30.1 3.8 25 57-81 181-205 (401)
290 PRK08673 3-deoxy-7-phosphohept 57.4 46 0.00099 27.6 6.6 71 21-96 104-176 (335)
291 PRK07777 aminotransferase; Val 57.2 15 0.00032 29.9 3.6 24 58-81 173-196 (387)
292 cd06593 GH31_xylosidase_YicI Y 57.2 97 0.0021 24.6 10.2 107 18-130 18-145 (308)
293 PRK07683 aminotransferase A; V 57.2 14 0.00031 30.1 3.6 25 57-81 174-198 (387)
294 TIGR01140 L_thr_O3P_dcar L-thr 57.0 14 0.00031 29.4 3.5 25 57-81 138-162 (330)
295 PF13204 DUF4038: Protein of u 57.0 48 0.001 26.5 6.5 68 21-89 27-112 (289)
296 PRK09257 aromatic amino acid a 56.9 15 0.00033 30.0 3.7 25 57-81 185-209 (396)
297 COG0800 Eda 2-keto-3-deoxy-6-p 56.9 42 0.00092 26.2 5.9 76 21-96 22-125 (211)
298 KOG4277|consensus 56.8 9.2 0.0002 32.0 2.4 39 55-93 113-152 (468)
299 PF15632 ATPgrasp_Ter: ATP-gra 56.7 14 0.00031 30.5 3.5 55 63-126 52-108 (329)
300 cd07948 DRE_TIM_HCS Saccharomy 56.5 83 0.0018 24.9 7.7 55 10-77 129-183 (262)
301 PF00834 Ribul_P_3_epim: Ribul 56.5 47 0.001 25.4 6.1 48 31-93 74-121 (201)
302 TIGR03234 OH-pyruv-isom hydrox 56.5 23 0.0005 27.1 4.5 42 25-81 15-56 (254)
303 PRK05664 threonine-phosphate d 56.5 16 0.00035 29.2 3.7 25 57-81 137-161 (330)
304 TIGR03539 DapC_actino succinyl 56.3 15 0.00032 29.6 3.5 25 57-81 155-179 (357)
305 PRK09593 arb 6-phospho-beta-gl 56.3 46 0.001 28.7 6.7 66 22-91 71-144 (478)
306 PRK06107 aspartate aminotransf 55.9 15 0.00032 30.2 3.5 25 57-81 179-204 (402)
307 TIGR01265 tyr_nico_aTase tyros 55.8 16 0.00036 29.9 3.8 25 57-81 182-206 (403)
308 PRK11183 D-lactate dehydrogena 55.8 13 0.00028 33.1 3.2 25 60-84 45-69 (564)
309 PRK07568 aspartate aminotransf 55.8 15 0.00033 29.7 3.6 25 57-81 175-199 (397)
310 PLN00175 aminotransferase fami 55.8 16 0.00034 30.4 3.7 25 57-81 200-224 (413)
311 PLN02460 indole-3-glycerol-pho 55.7 30 0.00065 28.8 5.2 85 11-96 120-249 (338)
312 PRK05692 hydroxymethylglutaryl 55.6 78 0.0017 25.4 7.5 32 60-91 151-182 (287)
313 KOG4730|consensus 55.6 12 0.00026 32.6 3.0 33 59-93 55-87 (518)
314 PLN02805 D-lactate dehydrogena 55.5 12 0.00027 32.9 3.1 24 60-83 140-163 (555)
315 PRK07315 fructose-bisphosphate 55.4 83 0.0018 25.4 7.7 24 64-87 117-140 (293)
316 PRK07324 transaminase; Validat 55.2 17 0.00038 29.5 3.8 26 57-82 166-191 (373)
317 cd06601 GH31_lyase_GLase GLase 55.1 1.2E+02 0.0025 24.9 9.1 105 10-128 11-117 (332)
318 PRK09148 aminotransferase; Val 55.1 16 0.00035 30.1 3.6 26 56-81 177-202 (405)
319 PRK12414 putative aminotransfe 54.9 16 0.00035 29.8 3.6 25 57-81 175-199 (384)
320 PF10566 Glyco_hydro_97: Glyco 54.9 22 0.00048 28.7 4.2 46 27-81 109-154 (273)
321 PRK13399 fructose-1,6-bisphosp 54.4 57 0.0012 27.3 6.7 26 63-88 122-147 (347)
322 TIGR00036 dapB dihydrodipicoli 54.4 52 0.0011 25.9 6.3 47 22-82 77-123 (266)
323 PRK08056 threonine-phosphate d 54.3 17 0.00038 29.2 3.6 25 57-81 155-179 (356)
324 PF06080 DUF938: Protein of un 54.2 35 0.00076 26.4 5.1 70 19-89 113-196 (204)
325 PF04055 Radical_SAM: Radical 54.2 19 0.00042 24.4 3.4 51 27-79 90-142 (166)
326 PF02534 T4SS-DNA_transf: Type 53.8 20 0.00043 30.1 4.0 68 62-129 317-385 (469)
327 cd07939 DRE_TIM_NifV Streptomy 53.7 82 0.0018 24.5 7.3 57 24-91 110-166 (259)
328 PRK09989 hypothetical protein; 53.7 62 0.0014 24.8 6.5 58 23-82 84-142 (258)
329 PRK07550 hypothetical protein; 53.6 17 0.00038 29.4 3.6 25 57-81 176-200 (386)
330 PRK06290 aspartate aminotransf 53.4 17 0.00037 30.2 3.5 25 57-81 192-216 (410)
331 PLN02397 aspartate transaminas 53.2 19 0.00041 30.0 3.8 25 57-81 207-231 (423)
332 PRK05764 aspartate aminotransf 52.8 19 0.0004 29.2 3.6 25 57-81 177-201 (393)
333 PF00682 HMGL-like: HMGL-like 52.8 43 0.00092 25.4 5.4 51 18-79 131-181 (237)
334 PLN02814 beta-glucosidase 52.7 48 0.001 28.9 6.2 64 23-91 76-147 (504)
335 COG1217 TypA Predicted membran 52.6 5.7 0.00012 35.0 0.5 22 71-92 47-81 (603)
336 COG0329 DapA Dihydrodipicolina 52.6 1.2E+02 0.0026 24.4 9.2 49 21-77 22-70 (299)
337 PF01747 ATP-sulfurylase: ATP- 52.6 30 0.00066 26.8 4.6 28 58-85 129-157 (215)
338 PLN02998 beta-glucosidase 52.6 45 0.00097 29.0 6.0 66 22-92 80-153 (497)
339 cd04885 ACT_ThrD-I Tandem C-te 52.4 36 0.00079 20.8 4.2 58 22-80 8-66 (68)
340 COG3505 VirD4 Type IV secretor 52.4 20 0.00043 32.1 3.9 65 63-129 421-487 (596)
341 cd07943 DRE_TIM_HOA 4-hydroxy- 52.2 91 0.002 24.3 7.3 33 59-91 136-168 (263)
342 TIGR03849 arch_ComA phosphosul 52.2 15 0.00032 29.2 2.8 15 21-35 9-23 (237)
343 cd06502 TA_like Low-specificit 52.1 18 0.00038 28.4 3.3 24 58-81 140-163 (338)
344 cd03321 mandelate_racemase Man 51.9 86 0.0019 25.5 7.4 71 10-85 187-296 (355)
345 PF03328 HpcH_HpaI: HpcH/HpaI 51.8 43 0.00092 25.3 5.2 67 59-128 92-178 (221)
346 PF04320 DUF469: Protein with 51.7 65 0.0014 22.2 5.6 80 7-86 12-99 (101)
347 cd07948 DRE_TIM_HCS Saccharomy 51.7 84 0.0018 24.8 7.1 56 26-92 114-169 (262)
348 KOG0258|consensus 51.5 99 0.0021 26.8 7.7 67 10-83 186-254 (475)
349 PRK11713 16S ribosomal RNA met 51.3 45 0.00097 25.7 5.4 79 13-95 75-157 (234)
350 TIGR00167 cbbA ketose-bisphosp 51.2 85 0.0018 25.4 7.1 24 64-87 118-141 (288)
351 cd07938 DRE_TIM_HMGL 3-hydroxy 51.1 1.2E+02 0.0025 24.1 7.8 61 26-91 116-176 (274)
352 TIGR01370 cysRS possible cyste 50.9 45 0.00098 27.4 5.5 65 12-77 136-204 (315)
353 cd07941 DRE_TIM_LeuA3 Desulfob 50.8 64 0.0014 25.5 6.3 44 22-76 149-192 (273)
354 PLN03059 beta-galactosidase; P 50.8 82 0.0018 29.5 7.6 60 21-83 56-117 (840)
355 cd06563 GH20_chitobiase-like T 50.8 21 0.00045 29.4 3.6 34 49-82 1-36 (357)
356 COG2730 BglC Endoglucanase [Ca 50.8 43 0.00093 28.1 5.5 55 26-83 75-135 (407)
357 PRK07682 hypothetical protein; 50.6 21 0.00045 28.8 3.6 25 57-81 167-191 (378)
358 PF09183 DUF1947: Domain of un 50.6 10 0.00022 24.2 1.4 25 58-82 2-27 (65)
359 cd06596 GH31_CPE1046 CPE1046 i 50.6 44 0.00095 26.9 5.2 46 24-80 45-91 (261)
360 COG3250 LacZ Beta-galactosidas 50.5 48 0.001 30.8 6.1 82 17-117 314-406 (808)
361 PRK05799 coproporphyrinogen II 50.4 45 0.00098 27.3 5.5 49 28-79 100-150 (374)
362 PRK11858 aksA trans-homoaconit 50.2 73 0.0016 26.5 6.8 45 21-76 142-186 (378)
363 COG0656 ARA1 Aldo/keto reducta 50.1 48 0.001 26.9 5.5 20 60-82 169-188 (280)
364 PF02233 PNTB: NAD(P) transhyd 49.8 29 0.00062 30.2 4.4 36 60-95 321-361 (463)
365 PRK08361 aspartate aminotransf 49.6 22 0.00047 29.0 3.5 25 57-81 179-203 (391)
366 cd07937 DRE_TIM_PC_TC_5S Pyruv 49.6 66 0.0014 25.5 6.2 14 113-126 231-244 (275)
367 PRK05660 HemN family oxidoredu 49.6 39 0.00085 28.0 5.1 48 31-81 111-160 (378)
368 cd01126 TraG_VirD4 The TraG/Tr 49.3 20 0.00043 29.5 3.2 67 63-129 278-344 (384)
369 TIGR01211 ELP3 histone acetylt 49.2 43 0.00093 29.4 5.4 55 27-82 206-260 (522)
370 KOG0257|consensus 49.1 20 0.00044 30.7 3.3 24 58-81 186-209 (420)
371 PRK14467 ribosomal RNA large s 48.8 1.1E+02 0.0023 25.5 7.5 28 61-88 265-296 (348)
372 PRK06256 biotin synthase; Vali 48.8 27 0.0006 28.1 4.0 60 27-89 152-211 (336)
373 PRK13880 conjugal transfer cou 48.5 32 0.0007 30.8 4.6 65 63-129 458-525 (636)
374 TIGR02666 moaA molybdenum cofa 48.3 58 0.0013 26.2 5.8 60 17-89 39-99 (334)
375 TIGR02631 xylA_Arthro xylose i 48.2 64 0.0014 27.0 6.1 73 23-95 114-202 (382)
376 PRK14465 ribosomal RNA large s 48.2 1.4E+02 0.003 24.9 8.0 74 3-85 219-294 (342)
377 PRK09057 coproporphyrinogen II 48.0 50 0.0011 27.3 5.5 61 28-91 105-169 (380)
378 TIGR03365 Bsubt_queE 7-cyano-7 47.9 49 0.0011 25.6 5.1 57 21-91 56-112 (238)
379 PRK01278 argD acetylornithine 47.9 65 0.0014 26.2 6.1 32 60-91 192-225 (389)
380 PRK14017 galactonate dehydrata 47.6 1E+02 0.0023 25.4 7.3 69 11-84 179-286 (382)
381 COG0050 TufB GTPases - transla 47.5 13 0.00028 31.1 1.9 20 74-93 57-89 (394)
382 cd07938 DRE_TIM_HMGL 3-hydroxy 47.2 89 0.0019 24.8 6.6 45 21-76 146-190 (274)
383 TIGR00086 smpB SsrA-binding pr 47.2 21 0.00045 26.3 2.7 24 60-83 78-101 (144)
384 COG1820 NagA N-acetylglucosami 46.8 23 0.0005 30.0 3.3 46 39-85 120-173 (380)
385 COG0481 LepA Membrane GTPase L 46.8 13 0.00029 32.8 1.9 36 58-93 33-90 (603)
386 cd04726 KGPDC_HPS 3-Keto-L-gul 46.6 1.1E+02 0.0025 22.3 7.0 53 29-95 69-124 (202)
387 PRK05835 fructose-bisphosphate 46.5 1.1E+02 0.0024 25.1 7.2 69 20-88 55-139 (307)
388 cd00311 TIM Triosephosphate is 46.5 70 0.0015 25.2 5.8 28 61-88 101-128 (242)
389 TIGR01182 eda Entner-Doudoroff 46.5 22 0.00048 27.4 2.9 75 22-96 18-120 (204)
390 PRK13840 sucrose phosphorylase 46.4 62 0.0013 28.3 5.9 71 13-86 161-236 (495)
391 COG1167 ARO8 Transcriptional r 46.4 1.3E+02 0.0029 25.5 7.9 65 18-92 210-274 (459)
392 PRK05678 succinyl-CoA syntheta 46.4 62 0.0013 26.2 5.6 57 14-83 66-123 (291)
393 PF13353 Fer4_12: 4Fe-4S singl 46.3 56 0.0012 22.2 4.8 52 18-81 33-88 (139)
394 COG1964 Predicted Fe-S oxidore 46.2 76 0.0017 27.7 6.3 56 20-88 90-148 (475)
395 PRK08185 hypothetical protein; 46.2 1.1E+02 0.0024 24.7 7.1 26 63-91 108-133 (283)
396 TIGR01521 FruBisAldo_II_B fruc 46.1 68 0.0015 26.9 5.9 26 62-87 119-144 (347)
397 PRK08363 alanine aminotransfer 45.7 28 0.0006 28.4 3.6 25 57-81 179-203 (398)
398 cd06568 GH20_SpHex_like A subg 45.6 30 0.00064 28.3 3.7 34 49-82 1-36 (329)
399 cd00946 FBP_aldolase_IIA Class 45.5 1.1E+02 0.0024 25.5 7.1 68 10-87 90-164 (345)
400 cd08346 PcpA_N_like N-terminal 45.2 9 0.0002 25.0 0.5 25 61-85 82-106 (126)
401 KOG0471|consensus 45.1 44 0.00095 29.4 4.9 70 14-83 30-107 (545)
402 PLN02672 methionine S-methyltr 45.1 26 0.00056 33.6 3.6 25 57-81 842-866 (1082)
403 PRK05093 argD bifunctional N-s 45.1 80 0.0017 25.9 6.2 26 61-86 202-228 (403)
404 TIGR02717 AcCoA-syn-alpha acet 45.0 69 0.0015 27.3 5.9 66 14-88 65-131 (447)
405 cd09013 BphC-JF8_N_like N-term 44.7 30 0.00065 22.9 3.1 32 60-91 70-101 (121)
406 TIGR01361 DAHP_synth_Bsub phos 44.7 72 0.0016 25.3 5.7 34 63-96 75-108 (260)
407 COG1809 (2R)-phospho-3-sulfola 44.7 43 0.00093 26.7 4.3 14 21-34 28-41 (258)
408 TIGR02826 RNR_activ_nrdG3 anae 44.6 1E+02 0.0022 22.3 6.0 56 18-90 43-98 (147)
409 PF09711 Cas_Csn2: CRISPR-asso 44.6 22 0.00048 27.1 2.6 24 58-81 140-163 (188)
410 PRK09936 hypothetical protein; 44.6 1.5E+02 0.0033 24.3 7.6 70 7-82 19-90 (296)
411 PRK13897 type IV secretion sys 44.6 25 0.00055 31.4 3.4 67 63-129 421-487 (606)
412 PRK14863 bifunctional regulato 44.5 35 0.00076 27.2 3.9 36 59-94 27-62 (292)
413 TIGR02064 dsrA sulfite reducta 44.5 57 0.0012 27.7 5.3 39 40-78 63-111 (402)
414 PF13727 CoA_binding_3: CoA-bi 44.5 28 0.0006 24.4 3.0 46 22-80 126-171 (175)
415 TIGR00538 hemN oxygen-independ 44.3 45 0.00097 28.3 4.7 64 29-93 153-219 (455)
416 TIGR01678 FAD_lactone_ox sugar 44.3 25 0.00054 30.0 3.2 31 60-92 21-51 (438)
417 PRK09989 hypothetical protein; 44.3 84 0.0018 24.1 5.9 41 26-81 17-57 (258)
418 TIGR00046 RNA methyltransferas 44.2 58 0.0013 25.2 5.0 81 12-96 76-159 (240)
419 smart00729 Elp3 Elongator prot 44.2 42 0.00092 23.7 4.0 52 27-80 100-153 (216)
420 PRK10736 hypothetical protein; 43.9 53 0.0012 27.7 5.0 71 23-94 57-158 (374)
421 PRK13404 dihydropyrimidinase; 43.8 1.2E+02 0.0026 25.9 7.3 50 24-82 135-184 (477)
422 PF03644 Glyco_hydro_85: Glyco 43.8 31 0.00067 28.1 3.5 52 24-84 86-137 (311)
423 PRK07094 biotin synthase; Prov 43.8 44 0.00096 26.7 4.4 24 60-83 161-184 (323)
424 cd00363 PFK Phosphofructokinas 43.8 1.5E+02 0.0032 24.5 7.5 93 11-130 64-158 (338)
425 cd01127 TrwB Bacterial conjuga 43.8 32 0.00068 28.8 3.7 67 63-129 285-351 (410)
426 PRK15481 transcriptional regul 43.4 1.9E+02 0.0041 23.9 8.5 60 12-81 190-250 (431)
427 PF13378 MR_MLE_C: Enolase C-t 43.4 30 0.00065 23.1 2.9 23 63-85 32-54 (111)
428 PRK06801 hypothetical protein; 43.2 1.6E+02 0.0035 23.7 7.6 26 63-88 114-139 (286)
429 COG3033 TnaA Tryptophanase [Am 43.1 1.1E+02 0.0024 26.3 6.7 75 21-101 169-245 (471)
430 PRK14455 ribosomal RNA large s 43.0 1.5E+02 0.0033 24.6 7.5 30 60-89 274-305 (356)
431 PF13200 DUF4015: Putative gly 42.9 83 0.0018 25.9 5.9 70 23-93 123-201 (316)
432 COG1448 TyrB Aspartate/tyrosin 42.8 1E+02 0.0023 26.3 6.5 54 26-86 159-212 (396)
433 PRK09249 coproporphyrinogen II 42.7 49 0.0011 28.1 4.7 34 60-93 183-219 (453)
434 PF07488 Glyco_hydro_67M: Glyc 42.7 2E+02 0.0043 24.0 8.8 88 22-130 55-144 (328)
435 PRK12999 pyruvate carboxylase; 42.6 83 0.0018 30.3 6.6 53 14-77 681-733 (1146)
436 PRK09196 fructose-1,6-bisphosp 42.5 1E+02 0.0022 25.8 6.4 26 62-87 121-146 (347)
437 COG2179 Predicted hydrolase of 42.4 85 0.0018 23.8 5.4 49 31-85 21-70 (175)
438 PRK09058 coproporphyrinogen II 42.4 56 0.0012 27.8 5.0 23 59-81 194-217 (449)
439 TIGR02759 TraD_Ftype type IV c 42.4 35 0.00076 30.2 3.9 67 63-129 422-488 (566)
440 TIGR01677 pln_FAD_oxido plant- 42.4 27 0.00059 30.9 3.2 31 60-91 38-68 (557)
441 PRK10534 L-threonine aldolase; 42.4 30 0.00066 27.3 3.3 24 58-81 141-164 (333)
442 PRK13621 psbV cytochrome c-550 42.3 64 0.0014 24.4 4.8 53 15-73 98-151 (170)
443 cd00377 ICL_PEPM Members of th 42.3 1.6E+02 0.0035 22.9 8.2 77 11-89 71-154 (243)
444 cd06570 GH20_chitobiase-like_1 42.0 38 0.00081 27.6 3.8 33 49-81 1-35 (311)
445 PRK00048 dihydrodipicolinate r 41.9 1.5E+02 0.0032 23.1 7.0 52 22-87 69-120 (257)
446 PF06415 iPGM_N: BPG-independe 41.8 1.1E+02 0.0024 23.9 6.2 52 21-81 43-98 (223)
447 TIGR02618 tyr_phenol_ly tyrosi 41.6 31 0.00067 29.9 3.3 55 19-82 152-209 (450)
448 TIGR01019 sucCoAalpha succinyl 41.5 96 0.0021 25.1 6.0 56 14-82 64-120 (286)
449 TIGR02351 thiH thiazole biosyn 41.2 1.4E+02 0.0031 24.6 7.1 52 16-76 98-149 (366)
450 TIGR00433 bioB biotin syntheta 41.1 1.4E+02 0.003 23.3 6.8 54 21-76 184-238 (296)
451 COG0794 GutQ Predicted sugar p 41.1 1.1E+02 0.0024 23.6 6.0 62 27-90 55-126 (202)
452 PF01408 GFO_IDH_MocA: Oxidore 41.0 34 0.00074 22.6 2.9 23 59-81 95-117 (120)
453 TIGR00089 RNA modification enz 41.0 52 0.0011 27.5 4.6 25 60-84 270-296 (429)
454 PF14237 DUF4339: Domain of un 40.7 26 0.00056 20.0 2.0 14 58-71 11-24 (45)
455 PLN02858 fructose-bisphosphate 40.7 1.2E+02 0.0027 29.8 7.5 62 11-88 1173-1234(1378)
456 PRK05422 smpB SsrA-binding pro 40.7 32 0.00068 25.4 2.8 24 60-83 82-105 (148)
457 cd00609 AAT_like Aspartate ami 40.7 36 0.00077 26.3 3.4 24 58-81 146-169 (350)
458 PF01081 Aldolase: KDPG and KH 40.5 26 0.00057 26.8 2.5 75 22-96 18-120 (196)
459 cd01335 Radical_SAM Radical SA 40.5 60 0.0013 22.5 4.3 55 27-81 88-142 (204)
460 TIGR02311 HpaI 2,4-dihydroxyhe 40.5 1.2E+02 0.0027 23.7 6.4 20 29-48 25-44 (249)
461 smart00857 Resolvase Resolvase 40.4 1.2E+02 0.0026 20.8 7.9 28 63-90 51-80 (148)
462 PRK08508 biotin synthase; Prov 40.3 74 0.0016 25.2 5.2 21 60-80 133-153 (279)
463 cd06591 GH31_xylosidase_XylS X 40.2 1.1E+02 0.0023 24.8 6.1 104 18-128 18-142 (319)
464 cd06562 GH20_HexA_HexB-like Be 39.9 39 0.00084 27.8 3.6 34 49-82 1-36 (348)
465 cd03322 rpsA The starvation se 39.9 1.7E+02 0.0037 23.9 7.4 70 11-85 165-273 (361)
466 TIGR01676 GLDHase galactonolac 39.9 29 0.00064 30.7 3.0 33 60-94 68-100 (541)
467 PRK13905 murB UDP-N-acetylenol 39.9 32 0.00069 27.6 3.0 24 60-83 37-60 (298)
468 cd07940 DRE_TIM_IPMS 2-isoprop 39.9 1.5E+02 0.0033 23.1 6.8 46 21-77 140-185 (268)
469 cd07945 DRE_TIM_CMS Leptospira 39.8 1.9E+02 0.0041 23.1 7.4 30 62-91 145-174 (280)
470 cd03329 MR_like_4 Mandelate ra 39.7 1.7E+02 0.0037 24.0 7.3 69 11-84 191-299 (368)
471 COG1082 IolE Sugar phosphate i 39.6 1.3E+02 0.0027 22.9 6.2 62 22-84 82-146 (274)
472 PF00034 Cytochrom_C: Cytochro 39.5 36 0.00078 20.7 2.7 17 60-76 74-90 (91)
473 TIGR02090 LEU1_arch isopropylm 39.5 1.8E+02 0.0039 24.1 7.5 45 21-76 138-182 (363)
474 cd07265 2_3_CTD_N N-terminal d 39.3 47 0.001 21.8 3.4 29 61-89 70-100 (122)
475 TIGR00531 BCCP acetyl-CoA carb 39.3 54 0.0012 24.0 3.9 26 21-46 1-26 (156)
476 smart00633 Glyco_10 Glycosyl h 39.2 41 0.00089 26.1 3.5 26 57-82 9-34 (254)
477 PF04800 ETC_C1_NDUFA4: ETC co 39.1 28 0.0006 24.0 2.2 43 39-81 21-73 (101)
478 PRK13850 type IV secretion sys 38.9 37 0.00081 30.7 3.6 68 62-129 403-470 (670)
479 PRK12330 oxaloacetate decarbox 38.9 1.3E+02 0.0027 26.5 6.7 47 19-76 150-196 (499)
480 PRK05692 hydroxymethylglutaryl 38.9 1.1E+02 0.0024 24.5 6.0 45 21-76 152-196 (287)
481 TIGR01290 nifB nitrogenase cof 38.7 1.2E+02 0.0026 26.0 6.4 29 61-89 200-231 (442)
482 TIGR02320 PEP_mutase phosphoen 38.7 2.1E+02 0.0045 23.1 9.4 73 12-87 81-162 (285)
483 PRK03906 mannonate dehydratase 38.6 79 0.0017 26.7 5.3 22 18-39 37-58 (385)
484 COG1809 (2R)-phospho-3-sulfola 38.6 98 0.0021 24.7 5.4 65 20-84 56-139 (258)
485 PF04308 DUF458: Protein of un 38.6 52 0.0011 24.1 3.7 30 10-39 96-125 (144)
486 PRK14460 ribosomal RNA large s 38.5 34 0.00075 28.4 3.1 23 63-85 272-296 (354)
487 TIGR02660 nifV_homocitr homoci 38.5 1.4E+02 0.003 24.6 6.7 48 22-80 140-188 (365)
488 PRK07998 gatY putative fructos 38.5 1.7E+02 0.0038 23.6 7.0 70 8-80 97-169 (283)
489 PF02679 ComA: (2R)-phospho-3- 38.5 1.5E+02 0.0032 23.6 6.5 65 4-82 8-72 (244)
490 TIGR02491 NrdG anaerobic ribon 38.5 1.5E+02 0.0032 21.3 6.4 60 18-91 43-107 (154)
491 TIGR00419 tim triosephosphate 38.3 93 0.002 23.9 5.2 27 60-86 93-119 (205)
492 PF01595 DUF21: Domain of unkn 38.3 39 0.00085 24.3 3.1 21 58-78 158-178 (183)
493 TIGR03581 EF_0839 conserved hy 38.3 1.1E+02 0.0024 24.3 5.6 45 26-81 137-181 (236)
494 PRK06302 acetyl-CoA carboxylas 38.2 53 0.0011 24.0 3.7 27 21-47 1-27 (155)
495 PRK00164 moaA molybdenum cofac 38.1 1.1E+02 0.0024 24.5 5.9 61 17-90 45-106 (331)
496 PF00265 TK: Thymidine kinase; 38.0 20 0.00043 26.7 1.5 38 57-95 84-128 (176)
497 PRK12436 UDP-N-acetylenolpyruv 37.9 35 0.00076 27.7 3.0 23 60-82 43-65 (305)
498 PLN03244 alpha-amylase; Provis 37.8 34 0.00073 32.0 3.1 67 60-127 437-516 (872)
499 PRK08207 coproporphyrinogen II 37.7 72 0.0016 27.7 5.0 20 60-79 301-320 (488)
500 KOG2550|consensus 37.7 1.1E+02 0.0024 26.6 6.0 31 66-96 343-375 (503)
No 1
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=5.4e-42 Score=275.60 Aligned_cols=123 Identities=34% Similarity=0.537 Sum_probs=117.9
Q ss_pred ceeEEeecCC-CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 9 EVLVHLDLKG-APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 9 ~Rg~mlD~~~-~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
.||+|||++| +++++++||++||.||.+|+|++++|+||+|||+|+ .+++++||++|||+|++||++|||+|||||
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecC
Confidence 5999999998 999999999999999999999999999999999998 455889999999999999999999999999
Q ss_pred CCcchHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348 85 PLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH 131 (131)
Q Consensus 85 ~~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev~ 131 (131)
|||||++++|++|+|.++++++.++++|||++|+|++|+++|++|+.
T Consensus 81 d~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~ 127 (301)
T cd06565 81 QTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVL 127 (301)
T ss_pred CCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHH
Confidence 99999999999999999999888889999999999999999999973
No 2
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.2e-38 Score=267.97 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=108.6
Q ss_pred CCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC----CC------------------------
Q psy2348 3 TPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LG------------------------ 54 (131)
Q Consensus 3 D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~----~~------------------------ 54 (131)
|+|+|++||+|||++|||+++++||++||.||.+|+|.+.+|+.|...|+ +.
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999998864321 10
Q ss_pred -------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-----cccccccccc-----------------
Q psy2348 55 -------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-----VKEFAKMRQN----------------- 105 (131)
Q Consensus 55 -------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-----~p~~~~l~e~----------------- 105 (131)
.+.+++||++|||+||+||++|||+||||||+|||+.++++ ||++.+....
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 02357899999999999999999999999999999999997 4444332110
Q ss_pred ----CCCCceecCCChhHHHHHHHHHhhhC
Q psy2348 106 ----FNDTRFICPNARSSLDLVFKMIGRLH 131 (131)
Q Consensus 106 ----~~~~~~lcp~~~~t~~f~~~ll~ev~ 131 (131)
+...++|||++|+|++|+++||+||+
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~ 190 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIA 190 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHH
Confidence 01246899999999999999999983
No 3
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=1.3e-36 Score=247.30 Aligned_cols=125 Identities=13% Similarity=0.118 Sum_probs=107.3
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC------C-----------CCCCCCCHHHHHHH
Q psy2348 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG------F-----------DNTNPFRETEIFII 69 (131)
Q Consensus 7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~------~-----------~~~~~YT~eeikei 69 (131)
|++||+|||++|||+++++||++||.||.+|+|.+.+|++|...|+-+ + +.+++||++|+|+|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 799999999999999999999999999999999999999987533211 1 23579999999999
Q ss_pred HHHHHHcCCeEeeccCCcchHHHHhc-cccccccccc-------CCCCceecCCChhHHHHHHHHHhhhC
Q psy2348 70 LAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQN-------FNDTRFICPNARSSLDLVFKMIGRLH 131 (131)
Q Consensus 70 v~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e~-------~~~~~~lcp~~~~t~~f~~~ll~ev~ 131 (131)
++||++|||+||||||+|||+.++++ +|++.+-.+. ....+.|||++|+|++|+++|++|+.
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~ 150 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELA 150 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 7777653221 12346899999999999999999973
No 4
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.5e-36 Score=245.39 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=107.0
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC----CC--C----CCCCCCCHHHHHHHHHHHHHc
Q psy2348 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LG--F----DNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~----~~--~----~~~~~YT~eeikeiv~yA~~~ 76 (131)
|++||+|||++||++++++||++||.||.+|+|.+.+|+.|...|+ +. + .++++||++|+|+|++||++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~r 80 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDR 80 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999999998865432 22 2 235699999999999999999
Q ss_pred CCeEeeccCCcchHHHHhc-ccccccccc-------cCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348 77 GLASIPLVPLYSDMDFVLK-VKEFAKMRQ-------NFNDTRFICPNARSSLDLVFKMIGRLH 131 (131)
Q Consensus 77 ~IevIP~i~~~GH~~~~L~-~p~~~~l~e-------~~~~~~~lcp~~~~t~~f~~~ll~ev~ 131 (131)
||+||||||+|||+.++++ ||++.+-.. .+..+++|||++|+|++|+++|++|+.
T Consensus 81 gI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~ 143 (311)
T cd06570 81 GIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMA 143 (311)
T ss_pred CCEEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHHH
Confidence 9999999999999999997 776654321 122356899999999999999999973
No 5
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.3e-36 Score=249.00 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=107.5
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCC--C----------CCC----------------CCC
Q psy2348 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPY--S----------LGF----------------DNT 58 (131)
Q Consensus 7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~--~----------~~~----------------~~~ 58 (131)
|++||+|||++||++++++||++||.||.+|+|.+.+|+.|...| . |.. +++
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 899999999999999999999999999999999999999886322 1 111 125
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-cccccccccc-------CCCCceecCCChhHHHHHHHHHhhh
Q psy2348 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQN-------FNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e~-------~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
|+||++|+|+|++||++|||+||||||||||+.++++ +|++.+..+. ...+++|||++|+|++|+++|++|+
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~ 160 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV 160 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999998 7776654321 2346899999999999999999997
Q ss_pred C
Q psy2348 131 H 131 (131)
Q Consensus 131 ~ 131 (131)
.
T Consensus 161 ~ 161 (357)
T cd06563 161 A 161 (357)
T ss_pred H
Confidence 3
No 6
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2.6e-36 Score=244.51 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=108.7
Q ss_pred CceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-------------------------CCCCCCCC
Q psy2348 8 KEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-------------------------FDNTNPFR 62 (131)
Q Consensus 8 ~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-------------------------~~~~~~YT 62 (131)
.+||+|||++|+++++++||++||.||.+|+|.+.+|++|+++|... .+++++||
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT 80 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT 80 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc
Confidence 47999999999999999999999999999999999999999887644 12467999
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-ccccccccc-cCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ-NFNDTRFICPNARSSLDLVFKMIGRLH 131 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e-~~~~~~~lcp~~~~t~~f~~~ll~ev~ 131 (131)
++|+|+|++||++|||+||||||+|||+.++++ +|++.+... .....++|||++|+|++|+++|++|+.
T Consensus 81 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~ 151 (326)
T cd06564 81 KEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYL 151 (326)
T ss_pred HHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 566544321 123568999999999999999999973
No 7
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=5.5e-36 Score=244.87 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=105.9
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCC--CC--------CCCCCCCCHHHHHHHHHHHH
Q psy2348 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYS--LG--------FDNTNPFRETEIFIILAAAE 74 (131)
Q Consensus 7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~--~~--------~~~~~~YT~eeikeiv~yA~ 74 (131)
|++||+|||++||++++++||++||.||.+|+|.+.+|+.|. ||+. +. .+.+++||++|+|+||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999885 3432 22 23467999999999999999
Q ss_pred HcCCeEeeccCCcchHHHHhc-ccccccccc-------cCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348 75 SNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ-------NFNDTRFICPNARSSLDLVFKMIGRLH 131 (131)
Q Consensus 75 ~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e-------~~~~~~~lcp~~~~t~~f~~~ll~ev~ 131 (131)
+|||+||||||+|||+.++++ +|+...-.. .....++|||++|+|++|+++|++|+.
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~ 145 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVS 145 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHH
Confidence 999999999999999999998 555432111 122456899999999999999999973
No 8
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=6.5e-36 Score=241.38 Aligned_cols=124 Identities=16% Similarity=0.216 Sum_probs=99.2
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCC--CC--------CCC---CCCCCHHHHHHHHH
Q psy2348 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYS--LG--------FDN---TNPFRETEIFIILA 71 (131)
Q Consensus 7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~--~~--------~~~---~~~YT~eeikeiv~ 71 (131)
|++||+|||++|+++++++||++||.||.+|+|.+++|++|+ ||+. .. .+. +|+||++|||+|++
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999998 3322 11 112 23999999999999
Q ss_pred HHHHcCCeEeeccCCcchHHHHhc-cccccccc-----------ccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 72 AAESNGLASIPLVPLYSDMDFVLK-VKEFAKMR-----------QNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 72 yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~-----------e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
||++|||+||||||+|||++++++ +|++.... .......+|||++|+|++|+++|++||
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~ 151 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEV 151 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHH
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999998 67776530 111223589999999999999999997
No 9
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3e-35 Score=236.35 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=104.2
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCCCC----C----------CCCCCCCHHHHHHHHHH
Q psy2348 9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----F----------DNTNPFRETEIFIILAA 72 (131)
Q Consensus 9 ~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~~~----~----------~~~~~YT~eeikeiv~y 72 (131)
+||+|||++|+|+++++||++||.||.+|+|.+++|++|. |++... + +.+++||++|+|+|++|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 7999999999999999999999999999999999999986 333221 1 34679999999999999
Q ss_pred HHHcCCeEeeccCCcchHHHHhc-cccccccc----ccCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348 73 AESNGLASIPLVPLYSDMDFVLK-VKEFAKMR----QNFNDTRFICPNARSSLDLVFKMIGRLH 131 (131)
Q Consensus 73 A~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~----e~~~~~~~lcp~~~~t~~f~~~ll~ev~ 131 (131)
|++|||+||||||||||++++++ +|+..+-. ......+.|||++|+|++|+++|++|+.
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~ 144 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIA 144 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999998 55543211 1123457999999999999999999973
No 10
>KOG2499|consensus
Probab=99.95 E-value=1.6e-27 Score=199.79 Aligned_cols=130 Identities=11% Similarity=0.124 Sum_probs=108.5
Q ss_pred CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--cCCCCCC----CC------CCCCCCHHHHHH
Q psy2348 1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWED--TLPYSLG----FD------NTNPFRETEIFI 68 (131)
Q Consensus 1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed--~~p~~~~----~~------~~~~YT~eeike 68 (131)
|.|.|+|++||++||-|||+.+++.||+.|+-||..|+|.+.-|+-| +|||..- +. ....||.+|+++
T Consensus 175 I~D~PrF~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~e 254 (542)
T KOG2499|consen 175 IQDKPRFGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSE 254 (542)
T ss_pred EeccCCCcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHH
Confidence 57999999999999999999999999999999999999998877754 5887644 21 234699999999
Q ss_pred HHHHHHHcCCeEeeccCCcchHHHH------hcccccccccccCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348 69 ILAAAESNGLASIPLVPLYSDMDFV------LKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH 131 (131)
Q Consensus 69 iv~yA~~~~IevIP~i~~~GH~~~~------L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev~ 131 (131)
||+||+.|||.|+||+|+|||+..| +-+|.|++- ++...+..++|.++.+|+|+++++.||.
T Consensus 255 vV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~-~~~~~~gplnP~~n~tydvls~i~~dv~ 322 (542)
T KOG2499|consen 255 VVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSF-EVQPPFGPLNPTNNHTYDVLSEIFEDVS 322 (542)
T ss_pred HHHHHHhccceeeecccCCcccccccCCCCcccCCccccc-ccCCCCcCCCCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999998 223444443 2223345699999999999999999873
No 11
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=194.08 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=105.9
Q ss_pred CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccC----CCCCC----------------------
Q psy2348 1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTL----PYSLG---------------------- 54 (131)
Q Consensus 1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~----p~~~~---------------------- 54 (131)
+.|+|||+|||+|+|++|+|.+.+.+|++|+.||.+|.|.+.++.-|.- ++++.
T Consensus 255 I~DaPRf~~rGllvDvaRqf~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~ 334 (732)
T COG3525 255 IVDAPRFAWRGLLVDVARQFHSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGY 334 (732)
T ss_pred cccCcccchhhhhHhhhhhcCCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCccccc
Confidence 5799999999999999999999999999999999999998877764421 11110
Q ss_pred --CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-ccccccc-cccC--------CCCceecCCChhHHHH
Q psy2348 55 --FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKM-RQNF--------NDTRFICPNARSSLDL 122 (131)
Q Consensus 55 --~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l-~e~~--------~~~~~lcp~~~~t~~f 122 (131)
-+.+|+|||+++|++++||+.|+|+|||+||+|||+.+++. +| +..+ ++.+ .....++|+-+-+++|
T Consensus 335 ~pe~~ggfytqd~~relv~yAsar~ItviPeiD~PgHa~aav~A~p-~~~l~~a~~ds~~sv~~~~n~~ln~tl~~t~~f 413 (732)
T COG3525 335 GPERMGGFYTQDDIRELVAYASARQITVIPEIDMPGHARAAVVAYP-DLNLGRADPDSYDSVQAYLNPVLNPTLDPTYQF 413 (732)
T ss_pred CcccccCcccHHHHHHHHHHHhhcCceecCCcCCcchhhhhhhhCc-cccccccCCCcchhhhhcccccccccccHHHHH
Confidence 12358999999999999999999999999999999999986 66 2233 1111 1234889999999999
Q ss_pred HHHHHhhhC
Q psy2348 123 VFKMIGRLH 131 (131)
Q Consensus 123 ~~~ll~ev~ 131 (131)
++++++||.
T Consensus 414 ldkv~dEv~ 422 (732)
T COG3525 414 LDKVLDEVA 422 (732)
T ss_pred HHHHHHHHH
Confidence 999999983
No 12
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.35 E-value=8.6e-06 Score=66.15 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=83.4
Q ss_pred CceeEEeecC--CCCCCHHHHHHHHHHHHHcCCCEEEEEee---cc------CCCCCCCC--CCCCCCHHHHHHHHHHHH
Q psy2348 8 KEVLVHLDLK--GAPPSLTYLKEILPILAYTGATSLLIEWE---DT------LPYSLGFD--NTNPFRETEIFIILAAAE 74 (131)
Q Consensus 8 ~~Rg~mlD~~--~~~~~~~~lk~~i~~la~~g~n~~~l~~e---d~------~p~~~~~~--~~~~YT~eeikeiv~yA~ 74 (131)
+.||+=|+-- ...++.+.+.++++.|...|+|++.++.. |+ .|+.+.+. .+..-..+=+..+++-|.
T Consensus 1 E~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaH 80 (311)
T PF02638_consen 1 EFRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAH 80 (311)
T ss_pred CeEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHH
Confidence 3588888873 46778999999999999999999988763 22 23322211 111224678999999999
Q ss_pred HcCCeEeeccC--CcchH-HHHh-ccccccccc------cc---CCCCceecCCChhHHHHHHHHHhhh
Q psy2348 75 SNGLASIPLVP--LYSDM-DFVL-KVKEFAKMR------QN---FNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 75 ~~~IevIP~i~--~~GH~-~~~L-~~p~~~~l~------e~---~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
+|||+|.+=+. +.++. +.++ ++|+..... .. .....-|||++|++.+|+.+++.||
T Consensus 81 krGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Ei 149 (311)
T PF02638_consen 81 KRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEI 149 (311)
T ss_pred HcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHH
Confidence 99999999872 22222 2233 355542111 00 1122469999999999999999997
No 13
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.79 E-value=0.00039 Score=50.17 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCEEEEEeec--cCC-CCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhccccccc
Q psy2348 27 KEILPILAYTGATSLLIEWED--TLP-YSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAK 101 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed--~~p-~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~ 101 (131)
+++++.|...++|++++.-.. -+. |+.. -+++ .++++=++|+++.|+++||.|+=-++.--+-....+||++..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp-~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~ 81 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHP-GLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFV 81 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCC-CCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceee
Confidence 688999999999999985441 111 2333 2222 566677799999999999999999999988888889999987
Q ss_pred ccccCC----------CCceecCCChhHHHHHHHHHhhh
Q psy2348 102 MRQNFN----------DTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 102 l~e~~~----------~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
....+. ....+|+.. .-.+++.+.++||
T Consensus 82 ~~~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei 119 (132)
T PF14871_consen 82 RDADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREI 119 (132)
T ss_pred ECCCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHH
Confidence 644332 123567754 5558888888887
No 14
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.0025 Score=54.01 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=86.4
Q ss_pred CCceeEEee-c-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec---cC------CCCCCCC--CCCCCCHHHHHHHHHHH
Q psy2348 7 FKEVLVHLD-L-KGAPPSLTYLKEILPILAYTGATSLLIEWED---TL------PYSLGFD--NTNPFRETEIFIILAAA 73 (131)
Q Consensus 7 f~~Rg~mlD-~-~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed---~~------p~~~~~~--~~~~YT~eeikeiv~yA 73 (131)
=+-||+=|| . .+...+...+++.+|.|..+|+|++...... ++ |..+... -++.=-.+=+..+++-|
T Consensus 45 ~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~A 124 (418)
T COG1649 45 QEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEA 124 (418)
T ss_pred ccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHH
Confidence 456999999 5 5889999999999999999999999876542 21 2221110 01122346689999999
Q ss_pred HHcCCeEeeccCCcc----hHHHHhccccccccc--------ccCC-CCceecCCChhHHHHHHHHHhhh
Q psy2348 74 ESNGLASIPLVPLYS----DMDFVLKVKEFAKMR--------QNFN-DTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 74 ~~~~IevIP~i~~~G----H~~~~L~~p~~~~l~--------e~~~-~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
.+|||+|+|=++... ++.....+|+..... ..+. ..-.|+|++|++-+|+.+++-||
T Consensus 125 Hkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~ev 194 (418)
T COG1649 125 HKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEV 194 (418)
T ss_pred HhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHH
Confidence 999999999888654 333333344433211 1110 24579999999999999999886
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=97.01 E-value=0.0032 Score=51.85 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE---EeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-cc
Q psy2348 22 SLTYLKEILPILAYTGATSLLI---EWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VK 97 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l---~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p 97 (131)
+.+.+++-++.|++.|+|.++| .|+..-| ..|.|.-+.+.++++.|+++||.||-.+.+-..=.++.+ +|
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP------~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~P 81 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP------EEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYP 81 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S------BTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC------CCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcc
Confidence 3478899999999999999986 3444333 346788888999999999999999987776666677664 66
Q ss_pred ccccccccC-----CCCceecCCChhHHHHHHHHHhhh
Q psy2348 98 EFAKMRQNF-----NDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 98 ~~~~l~e~~-----~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
+-......+ ......|+.+|...+.+.++++.+
T Consensus 82 e~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l 119 (374)
T PF02449_consen 82 EILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRAL 119 (374)
T ss_dssp CCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHH
Confidence 643322111 233567999999888888887654
No 16
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.92 E-value=0.0079 Score=49.32 Aligned_cols=109 Identities=13% Similarity=0.220 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccC---CCCCC---CCCCCCCC--HHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTL---PYSLG---FDNTNPFR--ETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~---p~~~~---~~~~~~YT--~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
+.+.+.++++++..-++|++++.+.|.. .|+.. ....|+-+ ..|++++++.++++||-+|--|-+|--...+
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 3477999999999999999999998764 34333 12223333 3699999999999999999999999977777
Q ss_pred hcccccccccccC------CCCceecCCChhHHHHHHHHHhhh
Q psy2348 94 LKVKEFAKMRQNF------NDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 94 L~~p~~~~l~e~~------~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
.++|+++--..++ ....-+||.++++.+.+-++..|+
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Ea 133 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEA 133 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 7788887522221 223468999999999998888775
No 17
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=96.84 E-value=0.0031 Score=50.70 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=61.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc------
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS------ 88 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G------ 88 (131)
.+-.+.+..|++||.-|++|+..+++. |+. +..+. ..-...+...+|+||++||+++||.|+==.+.-+
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~--~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~ 103 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLVDAGWYG--WEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVAN 103 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCG--S--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEecccccc--ccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHh
Confidence 456799999999999999999988872 221 00010 1111357779999999999999977654333333
Q ss_pred ---hHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348 89 ---DMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 89 ---H~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
+++.+|+. |++++-.+.--+-++-.+-+..++.++++++
T Consensus 104 ~~~~~~~~f~~--~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~ 145 (273)
T PF10566_consen 104 LEKQLDEAFKL--YAKWGVKGVKIDFMDRDDQEMVNWYEDILED 145 (273)
T ss_dssp HHCCHHHHHHH--HHHCTEEEEEEE--SSTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHcCCCEEeeCcCCCCCHHHHHHHHHHHHH
Confidence 34445543 4444322222233455667788888888765
No 18
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=96.26 E-value=0.014 Score=44.97 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 23 LTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
...|.+-||.|+.+|+|+++|- ++....+.|+ ..+..+=|.+|+|++++-|.++||.||=-+-
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4567888999999999998762 2322123343 1133345899999999999999999986553
No 19
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=95.95 E-value=0.045 Score=46.74 Aligned_cols=80 Identities=19% Similarity=0.105 Sum_probs=52.8
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEE--eecc--CCCCCC----C-----------CCCCCCCHHHHHHHHH
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE--WEDT--LPYSLG----F-----------DNTNPFRETEIFIILA 71 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~--~p~~~~----~-----------~~~~~YT~eeikeiv~ 71 (131)
+|++|+-...-.-..|.+-+|.|+.+|+|.++|- ++.. -.+-|+ . .+..+=|.+|.|++|+
T Consensus 9 ~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~ 88 (479)
T PRK09441 9 YFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAID 88 (479)
T ss_pred EEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHH
Confidence 5677765433445567788899999999998762 1211 001122 1 0122338999999999
Q ss_pred HHHHcCCeEeeccCCcchHH
Q psy2348 72 AAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 72 yA~~~~IevIP~i~~~GH~~ 91 (131)
-|.+|||.||=-+ .+-|+.
T Consensus 89 ~~H~~Gi~vi~D~-V~NH~~ 107 (479)
T PRK09441 89 ALHENGIKVYADV-VLNHKA 107 (479)
T ss_pred HHHHCCCEEEEEE-Cccccc
Confidence 9999999998665 456665
No 20
>smart00642 Aamy Alpha-amylase domain.
Probab=95.83 E-value=0.069 Score=39.60 Aligned_cols=72 Identities=18% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEE--eeccC---CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIE--WEDTL---PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~---p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
.=+...+.+-++.|+.+|+|+++|- ++... .+.|+ ..+..+=|.+|++++++-|.++||.||-.+ ++-
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~-V~N 93 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV-VIN 93 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCC
Confidence 3457778888899999999998762 12111 12222 111223378999999999999999999776 455
Q ss_pred hHHH
Q psy2348 89 DMDF 92 (131)
Q Consensus 89 H~~~ 92 (131)
|+..
T Consensus 94 H~~~ 97 (166)
T smart00642 94 HTSD 97 (166)
T ss_pred CCCC
Confidence 5543
No 21
>PRK01060 endonuclease IV; Provisional
Probab=95.26 E-value=0.14 Score=39.99 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=48.5
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348 9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS 80 (131)
Q Consensus 9 ~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Iev 80 (131)
.-|+|..+++. +.+.++.++.+|+.++.|-......|. +..+|.++++++-+.++++||++
T Consensus 3 ~~g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~-----~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 3 LIGAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK-----RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred eEEEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc-----CCCCCHHHHHHHHHHHHHcCCCC
Confidence 35778777655 788999999999999988665422222 35789999999999999999994
No 22
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.06 E-value=0.1 Score=40.04 Aligned_cols=72 Identities=13% Similarity=-0.062 Sum_probs=48.3
Q ss_pred CceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCC-CCC----CCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 8 KEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGF-DNT----NPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 8 ~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~-~~~----~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.+||+-.. ..+-....+.++.|+.+|+|.+++-+. +.... +.. +.-..+.++++++.|+++||.||.
T Consensus 9 ~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 9 NWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp EEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred Eeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 34555544 222226789999999999999998765 11111 111 123457889999999999999998
Q ss_pred ccCCc
Q psy2348 83 LVPLY 87 (131)
Q Consensus 83 ~i~~~ 87 (131)
.+-..
T Consensus 81 d~h~~ 85 (281)
T PF00150_consen 81 DLHNA 85 (281)
T ss_dssp EEEES
T ss_pred EeccC
Confidence 77764
No 23
>PRK05402 glycogen branching enzyme; Provisional
Probab=94.34 E-value=0.18 Score=45.38 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=46.3
Q ss_pred CCHHHHH-HHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 21 PSLTYLK-EILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 21 ~~~~~lk-~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
-+...+. +++|.|+.+|+|++.|- +|. +..|... ..++.+=|.+|.|++|+.|.++||.||=.+ .+.|+
T Consensus 262 g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~-V~NH~ 340 (726)
T PRK05402 262 LSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW-VPAHF 340 (726)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCCCC
Confidence 3455555 55799999999998762 121 1112111 224456689999999999999999998654 25666
No 24
>PRK12313 glycogen branching enzyme; Provisional
Probab=94.27 E-value=0.2 Score=44.35 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=62.5
Q ss_pred CCHHHHH-HHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 21 PSLTYLK-EILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 21 ~~~~~lk-~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
-+...+. ++||.|+.+|+|.+.|- ++. +..|... .....+=|.+|.|++|+.|.++||.||=.+= +.|+
T Consensus 167 g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V-~nH~ 245 (633)
T PRK12313 167 LSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWV-PGHF 245 (633)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCC
Confidence 3444444 66799999999998752 221 1122111 2233455799999999999999999997753 6676
Q ss_pred HH---Hhcc----cccccc----ccc-CCCCceecCCChhHHHHHHHHH
Q psy2348 91 DF---VLKV----KEFAKM----RQN-FNDTRFICPNARSSLDLVFKMI 127 (131)
Q Consensus 91 ~~---~L~~----p~~~~l----~e~-~~~~~~lcp~~~~t~~f~~~ll 127 (131)
.. .+.+ +.|... ... ......++-.+|++.+++.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~ 294 (633)
T PRK12313 246 PKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSA 294 (633)
T ss_pred CCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHH
Confidence 42 1211 111100 000 0011256777899888887765
No 25
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.22 E-value=0.21 Score=44.20 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=61.2
Q ss_pred HHHHH-HHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348 23 LTYLK-EILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (131)
Q Consensus 23 ~~~lk-~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~ 92 (131)
...+. +++|.|+.+|+|+++|- +|. +..|..- ..++.+=|.+|.|++|+.|.++||.||=.+ .+.|+..
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~-V~NH~~~ 233 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW-VPGHFPK 233 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccCcCC
Confidence 34433 55699999999998761 121 1112111 223334578999999999999999999765 3567642
Q ss_pred ---Hhc----ccccccc--c--cc-CCCCceecCCChhHHHHHHHHHh
Q psy2348 93 ---VLK----VKEFAKM--R--QN-FNDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 93 ---~L~----~p~~~~l--~--e~-~~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
.+. .+.|... . .. ......++..+|++.+++.+.+.
T Consensus 234 ~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 234 DDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred ccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 221 1112110 0 00 00112467788888888877653
No 26
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=94.21 E-value=0.2 Score=44.68 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCC---------CCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFD---------NTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~---------~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~ 92 (131)
+.+...++++.|+++|+|.|.|-==-.||+.+.|. ...+=|.||.|.+|+.|-++||-||=-+ .|||..-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~-V~~HF~~ 241 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW-VPNHFPP 241 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe-cCCcCCC
Confidence 45667799999999999997652212356554432 2234589999999999999999998443 4566543
No 27
>PLN00196 alpha-amylase; Provisional
Probab=94.17 E-value=0.35 Score=41.17 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC-------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG-------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~-------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
.-..|.+-++.|+.+|++.++|- ++. ..+.|+ +....+=|.+|.|++++-|.++||.||=-+ .+-|+.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s-~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv-V~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHS-VSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI-VINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE-CccCcc
Confidence 35678889999999999998872 221 111222 211235589999999999999999998665 345554
No 28
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=94.16 E-value=0.29 Score=39.45 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=44.4
Q ss_pred eecCC-CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 14 LDLKG-APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 14 lD~~~-~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.-.+ .-++++.|++.+.....+..+.-.+.+|.+--+- +|..||.+|+++|.++|+++||-+.
T Consensus 98 l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~----GG~~~s~~el~ai~~~a~~~gl~lh 162 (290)
T PF01212_consen 98 LPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELA----GGTVYSLEELRAISELAREHGLPLH 162 (290)
T ss_dssp EBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTT----TSB---HHHHHHHHHHHHHHT-EEE
T ss_pred CCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCC----CCeeCCHHHHHHHHHHHHhCceEEE
Confidence 33345 7789999999988877755566667777654332 2568999999999999999998875
No 29
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=94.14 E-value=0.26 Score=42.91 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC----CC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~----~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH 89 (131)
.=+...+.+-++.|+.+|+|++.|- ..|+.. |+ -.+..+=|.+|++++++.|.++||.||-.+ .+-|
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~--Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~-v~NH 99 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLN--PFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM-VFNH 99 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEEC--CcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE-Cccc
Confidence 3467788888999999999998762 111111 11 112223489999999999999999999765 4555
Q ss_pred HH
Q psy2348 90 MD 91 (131)
Q Consensus 90 ~~ 91 (131)
+.
T Consensus 100 ~~ 101 (543)
T TIGR02403 100 TS 101 (543)
T ss_pred cc
Confidence 53
No 30
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=93.87 E-value=0.28 Score=42.77 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEE----eecc--CCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIE----WEDT--LPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~----~ed~--~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~ 92 (131)
+...+.+-+|.|+.+|+|+++|- +... ..|... ..++.+=|.+|.|++|+.|.++||.||=.+ .+.|+..
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~-V~NH~~~ 187 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDV-VYNHFGP 187 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEE-ccCCCCC
Confidence 55667777899999999998762 1111 111111 223345579999999999999999999665 4567642
Q ss_pred H---h-c-ccccccccccCCCCceecCCCh---hHHHHHHHHH
Q psy2348 93 V---L-K-VKEFAKMRQNFNDTRFICPNAR---SSLDLVFKMI 127 (131)
Q Consensus 93 ~---L-~-~p~~~~l~e~~~~~~~lcp~~~---~t~~f~~~ll 127 (131)
- + . .| |-.-.......+.++-.++ ++.+++-+.+
T Consensus 188 ~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~ 229 (542)
T TIGR02402 188 EGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNA 229 (542)
T ss_pred ccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHH
Confidence 1 1 1 12 2111111112235666666 7777766644
No 31
>PRK14706 glycogen branching enzyme; Provisional
Probab=93.80 E-value=0.26 Score=44.02 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=62.5
Q ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEEeeccCCCC---CC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348 20 PPSLTYL-KEILPILAYTGATSLLIEWEDTLPYS---LG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (131)
Q Consensus 20 ~~~~~~l-k~~i~~la~~g~n~~~l~~ed~~p~~---~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH 89 (131)
+.+...+ .++++.|.++|+|.++|--=--+|+. |+ .....+=|.+|.|++|+-|.++||.||-.+ .+.|
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~-v~nH 241 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW-VPGH 241 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 3343333 46679999999999875311112332 22 122334489999999999999999999775 3466
Q ss_pred HH---HHhcc----ccc--cccc--ccCC-CCceecCCChhHHHHHHHHH
Q psy2348 90 MD---FVLKV----KEF--AKMR--QNFN-DTRFICPNARSSLDLVFKMI 127 (131)
Q Consensus 90 ~~---~~L~~----p~~--~~l~--e~~~-~~~~lcp~~~~t~~f~~~ll 127 (131)
+. ..|.+ |-| ..-. .... ....++-++|++.+|+-+.+
T Consensus 242 ~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~ 291 (639)
T PRK14706 242 FPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSA 291 (639)
T ss_pred cCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHH
Confidence 42 22321 212 1100 0000 11246778899999887654
No 32
>PLN02784 alpha-amylase
Probab=93.64 E-value=0.47 Score=43.89 Aligned_cols=81 Identities=11% Similarity=-0.068 Sum_probs=56.0
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC----C--CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG----F--DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~----~--~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.||++|.-+.----..|++-++.|+.+|+|.++|- ++.. ...|+ + -+..+=|.+|+|++++.|.++||.||
T Consensus 507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVI 585 (894)
T PLN02784 507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVL 585 (894)
T ss_pred EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 57788873221225678899999999999998872 1111 11233 1 12334589999999999999999999
Q ss_pred eccCCcchHHH
Q psy2348 82 PLVPLYSDMDF 92 (131)
Q Consensus 82 P~i~~~GH~~~ 92 (131)
-.+ .+-|+..
T Consensus 586 lDi-ViNH~ag 595 (894)
T PLN02784 586 GDA-VLNHRCA 595 (894)
T ss_pred EEE-Ccccccc
Confidence 876 5667653
No 33
>PLN02361 alpha-amylase
Probab=93.41 E-value=0.4 Score=40.56 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=51.1
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
||..|...+ ---..|++-++.|+.+|+|.++|- ++ ...+.|+ --+..+=|++|.|++++-|.++||.||-
T Consensus 17 ~F~W~~~~~-~~w~~i~~kl~~l~~lG~t~iwl~P~~~-~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~ 94 (401)
T PLN02361 17 AFNWESHKH-DWWRNLEGKVPDLAKSGFTSAWLPPPSQ-SLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMA 94 (401)
T ss_pred EEeccCCcc-HHHHHHHHHHHHHHHcCCCEEEeCCCCc-CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 566665321 133567788889999999998772 11 1112233 1123345899999999999999999998
Q ss_pred ccCCcchH
Q psy2348 83 LVPLYSDM 90 (131)
Q Consensus 83 ~i~~~GH~ 90 (131)
.+= +-|+
T Consensus 95 D~V-~NH~ 101 (401)
T PLN02361 95 DIV-INHR 101 (401)
T ss_pred EEc-cccc
Confidence 763 4565
No 34
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=93.31 E-value=0.63 Score=36.15 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=42.5
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
|+|..+++. +.+-++.++++|++++.|.......+. +..+|.++++++-+.++++||+|.
T Consensus 3 g~~~~~~~~------~~~~~~~~~~~G~~~vel~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~gl~ls 62 (273)
T smart00518 3 GAHVSAAGG------LYKAFIEAVDIGARSFQLFLGNPRSWK-----GVRLSEETAEKFKEALKENNIDVS 62 (273)
T ss_pred eEEEcccCc------HhHHHHHHHHcCCCEEEEECCCCCCCC-----CCCCCHHHHHHHHHHHHHcCCCEE
Confidence 677777652 556788888888888888665433222 236788888888888888888765
No 35
>KOG0470|consensus
Probab=93.14 E-value=0.14 Score=46.28 Aligned_cols=112 Identities=14% Similarity=0.052 Sum_probs=68.1
Q ss_pred ecCCCCCCHHH-------HHHHHHHHHHcCCCEEEEE--eec--cCCCCCC------CCCCCCCCHH------HHHHHHH
Q psy2348 15 DLKGAPPSLTY-------LKEILPILAYTGATSLLIE--WED--TLPYSLG------FDNTNPFRET------EIFIILA 71 (131)
Q Consensus 15 D~~~~~~~~~~-------lk~~i~~la~~g~n~~~l~--~ed--~~p~~~~------~~~~~~YT~e------eikeiv~ 71 (131)
+.+++=+++.. -++.++.|.++|+|.++|. +|. .+...|+ .+...+=|.+ |.|++|+
T Consensus 239 gfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd 318 (757)
T KOG0470|consen 239 GFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVD 318 (757)
T ss_pred cccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHH
Confidence 44566666655 4566888999999998763 343 1212233 2222234555 9999999
Q ss_pred HHHHcCCeEeeccCCcchHHHHhcc----------cccccccc----cCCCCceecCCChhHHHHHHHHH
Q psy2348 72 AAESNGLASIPLVPLYSDMDFVLKV----------KEFAKMRQ----NFNDTRFICPNARSSLDLVFKMI 127 (131)
Q Consensus 72 yA~~~~IevIP~i~~~GH~~~~L~~----------p~~~~l~e----~~~~~~~lcp~~~~t~~f~~~ll 127 (131)
-|-+.||+|+=.| ..-|+..--+. ..|-+... +....+.++-+++.+.+||-+=+
T Consensus 319 ~aHs~GI~VlLDV-V~sHaa~n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nL 387 (757)
T KOG0470|consen 319 KAHSLGIEVLLDV-VHSHAAKNSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNL 387 (757)
T ss_pred HHhhCCcEEehhh-hhhhcccCcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHH
Confidence 9999999998666 44555541111 11222111 11234678888999999987543
No 36
>PRK09505 malS alpha-amylase; Reviewed
Probab=92.89 E-value=0.56 Score=42.29 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEE--eec-----------c---CCCCCCC------CCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348 22 SLTYLKEILPILAYTGATSLLIE--WED-----------T---LPYSLGF------DNTNPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~--~ed-----------~---~p~~~~~------~~~~~YT~eeikeiv~yA~~~~Ie 79 (131)
++..|.+-+|.|+.+|+|+++|- ++. . +.|-|++ .+..+=|.+|.|++|+-|.+|||.
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 47778888999999999998862 221 1 1233331 123345899999999999999999
Q ss_pred EeeccCCcchHH
Q psy2348 80 SIPLVPLYSDMD 91 (131)
Q Consensus 80 vIP~i~~~GH~~ 91 (131)
||=.+ .+-|+.
T Consensus 308 VilD~-V~NH~~ 318 (683)
T PRK09505 308 ILFDV-VMNHTG 318 (683)
T ss_pred EEEEE-CcCCCc
Confidence 88655 245554
No 37
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=92.77 E-value=0.32 Score=42.91 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=63.8
Q ss_pred CCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEE---eeccCCCCCC-------CC--CCCCCCHHHHHHH
Q psy2348 2 VTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE---WEDTLPYSLG-------FD--NTNPFRETEIFII 69 (131)
Q Consensus 2 ~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~---~ed~~p~~~~-------~~--~~~~YT~eeikei 69 (131)
+|+-+|+.-|+.=|.... .+.+..++-|+.|+.+-+|++++| |.+.-|+.+. |. .+...+.+-||+.
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~y 175 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDY 175 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHH
Confidence 588899999998886322 566888999999999999999985 6666676544 21 1236788999999
Q ss_pred HHHHHHcCCeEeeccCCcchHHHHhc
Q psy2348 70 LAAAESNGLASIPLVPLYSDMDFVLK 95 (131)
Q Consensus 70 v~yA~~~~IevIP~i~~~GH~~~~L~ 95 (131)
|+.|.++|+..++-.-+.|=.+....
T Consensus 176 I~~ah~~Gmkam~Ynmiyaa~~~~~~ 201 (559)
T PF13199_consen 176 INAAHKYGMKAMAYNMIYAANNNYEE 201 (559)
T ss_dssp HHHHHHTT-EEEEEEESSEEETT--S
T ss_pred HHHHHHcCcceehhHhhhccccCccc
Confidence 99999999999999988887776544
No 38
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.59 E-value=0.27 Score=44.21 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=59.7
Q ss_pred HHHHHHHcCCCEEEEE----eecc--------CCCCCC-----CCCCCCC----CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 29 ILPILAYTGATSLLIE----WEDT--------LPYSLG-----FDNTNPF----RETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~----~ed~--------~p~~~~-----~~~~~~Y----T~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
.||.|+++|+|+++|- +.+. .-|.|+ ..-.+.| |.+|.|++|+.|.++||.||=.+ .+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv-V~ 267 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV-VY 267 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE-Cc
Confidence 5899999999998652 2110 012333 1112244 78999999999999999999665 35
Q ss_pred chHHHH--------hc---ccccccccc--------cCCCCceecCCChhHHHHHHHHHh
Q psy2348 88 SDMDFV--------LK---VKEFAKMRQ--------NFNDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 88 GH~~~~--------L~---~p~~~~l~e--------~~~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
.|+..- ++ .+.|-.... .....+.++..+|.+.++|.+.+.
T Consensus 268 NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~ 327 (688)
T TIGR02100 268 NHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLR 327 (688)
T ss_pred CCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHH
Confidence 666432 11 111111110 111234677889999999887654
No 39
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=92.27 E-value=0.77 Score=37.53 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHH---HHHHHHHHHHcCCeEeeccC
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETE---IFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~ee---ikeiv~yA~~~~IevIP~i~ 85 (131)
|.+-+.+.=+.+++.|+.+|+|+.+ |=-..=||-.. |+ ..|+++| +|+|++.|++.||++|=.|.
T Consensus 9 G~PWs~e~R~~l~~f~~~~kmN~Yi-YAPKdDpyhr~~Wr--e~Yp~~el~~l~~L~~~a~~~~V~Fv~ais 77 (306)
T PF07555_consen 9 GRPWSHEDRLDLIRFLGRYKMNTYI-YAPKDDPYHRSKWR--EPYPEEELAELKELADAAKANGVDFVYAIS 77 (306)
T ss_dssp SS---HHHHHHHHHHHHHTT--EEE-E--TT-TTTTTTTT--S---HHHHHHHHHHHHHHHHTT-EEEEEEB
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEE-ECCCCChHHHhhhc--ccCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 5677888889999999999999754 22211233222 66 6787764 67889999999999886553
No 40
>PRK12568 glycogen branching enzyme; Provisional
Probab=92.15 E-value=0.67 Score=42.13 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=48.2
Q ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEE--eeccCCCC---CC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 20 PPSLTYLK-EILPILAYTGATSLLIE--WEDTLPYS---LG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 20 ~~~~~~lk-~~i~~la~~g~n~~~l~--~ed~~p~~---~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
+.+-..+. ++|+.|+.+|+|.+.|- +| +|+. |+ .....+=|.+|.|++|+.|.++||.||-.+- +
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e--~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V-~ 341 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITE--HPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWV-S 341 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECcccc--CCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec-c
Confidence 33444454 56899999999998652 22 2322 22 1123345799999999999999999998774 6
Q ss_pred chHHH
Q psy2348 88 SDMDF 92 (131)
Q Consensus 88 GH~~~ 92 (131)
.|+..
T Consensus 342 nH~~~ 346 (730)
T PRK12568 342 AHFPD 346 (730)
T ss_pred ccCCc
Confidence 77653
No 41
>PRK10785 maltodextrin glucosidase; Provisional
Probab=92.10 E-value=0.73 Score=40.68 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEE--eec--cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIE--WED--TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~--~ed--~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
++..|.+-+|.|+.+|+|++.|- ++. ...|.-. --++.+=|.+|.|++++-|.+|||.||=-+ ++.|+.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~-V~NH~~ 252 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG-VFNHTG 252 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCCcCC
Confidence 56788889999999999998762 111 1111110 112334488999999999999999998654 334443
No 42
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=92.02 E-value=0.66 Score=42.33 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCCCEEEEE--eeccC-CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH---
Q psy2348 26 LKEILPILAYTGATSLLIE--WEDTL-PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV--- 93 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~--~ed~~-p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~--- 93 (131)
..+.++.|+.+|+|.++|- +|..+ ...|+ ..+..+=|.+|+|++|+-|.++||.||=.+ .+.|+..-
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv-V~nH~~~~~~~ 331 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV-VHSHASKNTLD 331 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe-ccccccccccc
Confidence 3678999999999998763 22111 11222 112223478999999999999999998654 46666431
Q ss_pred -hc-----ccccccccccC----CCCceecCCChhHHHHHHHHHh
Q psy2348 94 -LK-----VKEFAKMRQNF----NDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 94 -L~-----~p~~~~l~e~~----~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
|. .+.|-+....+ .....++-+++++.+||.+.+.
T Consensus 332 gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~ 376 (758)
T PLN02447 332 GLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLR 376 (758)
T ss_pred cccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHH
Confidence 11 11221111100 0112577788899888877653
No 43
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=91.99 E-value=0.99 Score=41.86 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 19 APPSLTYLKEILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
.-++.+.+.+.++.++.+|+|.+.+- ++. +..|.-. ..+...=|.++.+++++-|+++||.||=.|
T Consensus 15 ~~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 15 AGFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred CCCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34788999999999999999997651 111 1111100 111222388999999999999999877554
No 44
>PRK15452 putative protease; Provisional
Probab=91.99 E-value=0.93 Score=38.81 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCC-CCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDN-TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~-~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
+++.++..+ ..|++.+.+..+. | + ++. .+.+|.+|+++.+++|.++|++|.-.++++=|-+.+
T Consensus 12 ~~e~l~aAi----~~GADaVY~G~~~---~-~-~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el 75 (443)
T PRK15452 12 TLKNMRYAF----AYGADAVYAGQPR---Y-S-LRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKL 75 (443)
T ss_pred CHHHHHHHH----HCCCCEEEECCCc---c-c-hhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHH
Confidence 444444433 6799987775442 1 1 222 357899999999999999999998888888776554
No 45
>PRK14705 glycogen branching enzyme; Provisional
Probab=91.85 E-value=0.65 Score=44.44 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCCEEEEE--eeccCCC---CCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH---H
Q psy2348 26 LKEILPILAYTGATSLLIE--WEDTLPY---SLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM---D 91 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~--~ed~~p~---~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~---~ 91 (131)
.+++||.|+.+|+|.+.|- .| +|+ .|+ ..+..+=|.+|.|++|+.|-++||.||=.+ .|+|+ .
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e--~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~-V~nH~~~d~ 844 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAE--HPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW-VPAHFPKDS 844 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECcccc--CCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe-ccccCCcch
Confidence 3567899999999998652 22 232 222 222334489999999999999999999654 45666 2
Q ss_pred HHhcc----cccccc----cccC-CCCceecCCChhHHHHHHHHH
Q psy2348 92 FVLKV----KEFAKM----RQNF-NDTRFICPNARSSLDLVFKMI 127 (131)
Q Consensus 92 ~~L~~----p~~~~l----~e~~-~~~~~lcp~~~~t~~f~~~ll 127 (131)
+.|+. +-|.+- .+.+ -....++-+++++.+|+-+.+
T Consensus 845 ~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a 889 (1224)
T PRK14705 845 WALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANA 889 (1224)
T ss_pred hhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHH
Confidence 22321 112111 0100 012356778888888876543
No 46
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=91.62 E-value=1.1 Score=41.20 Aligned_cols=73 Identities=22% Similarity=0.180 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
+.-++.+.+.+.++.|+.+|+|++.+- ++. +..|... -.+..+=|.++.+++++-|.++||.||-.+ .|-
T Consensus 10 ~~~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi-VpN 88 (825)
T TIGR02401 10 RAGFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI-VPN 88 (825)
T ss_pred CCCCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence 345788999999999999999997651 110 1112110 112223389999999999999999998765 366
Q ss_pred hHH
Q psy2348 89 DMD 91 (131)
Q Consensus 89 H~~ 91 (131)
|+.
T Consensus 89 H~a 91 (825)
T TIGR02401 89 HMA 91 (825)
T ss_pred ccc
Confidence 665
No 47
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=91.27 E-value=0.99 Score=39.20 Aligned_cols=68 Identities=12% Similarity=-0.005 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC----CC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~----~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH 89 (131)
.=+...|.+-+|.|+.+|+|+++|- .-|+.. |+ -.+..+=|.+|.|++++-|.++||.||=.+ ++.|
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~--Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~-V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLL--PFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL-VLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEEC--CCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe-ccCc
Confidence 4467788889999999999998762 112111 11 112223478999999999999999988543 3444
Q ss_pred H
Q psy2348 90 M 90 (131)
Q Consensus 90 ~ 90 (131)
+
T Consensus 101 ~ 101 (539)
T TIGR02456 101 T 101 (539)
T ss_pred C
Confidence 4
No 48
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=91.23 E-value=1 Score=39.38 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEE--eec---cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIE--WED---TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed---~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
=++..+.+-+|.|+.+|+|+++|- ++. ...|.-. -.+..+=|.+|++++++-|.++||.||=.+ ++-|++
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~-V~NH~s 107 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM-VFNHTS 107 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCCCcc
Confidence 367778888999999999998761 110 0112111 112334489999999999999999998665 345544
No 49
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=91.20 E-value=0.44 Score=42.01 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEE----eecc------CCC-CCC-----CCCCCCC---------CHHHHHHHHHHHHHcCC
Q psy2348 24 TYLKEILPILAYTGATSLLIE----WEDT------LPY-SLG-----FDNTNPF---------RETEIFIILAAAESNGL 78 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l~----~ed~------~p~-~~~-----~~~~~~Y---------T~eeikeiv~yA~~~~I 78 (131)
..+.+.||.|+.+|+|+++|- +... ..| .|+ ..-.+.| +.+|.|++|+-|.++||
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi 243 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGI 243 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence 345677999999999998651 2110 001 222 1000112 25999999999999999
Q ss_pred eEeeccCCcchHHH----Hhc--cccccc-ccccC------CCCceecCCChhHHHHHHHHHh
Q psy2348 79 ASIPLVPLYSDMDF----VLK--VKEFAK-MRQNF------NDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 79 evIP~i~~~GH~~~----~L~--~p~~~~-l~e~~------~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
.||=.+ .+.|+.. .+. .|.|-. ....+ ...+.++-.+|.+.+++.+.+.
T Consensus 244 ~VilDv-V~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~ 305 (605)
T TIGR02104 244 RVIMDV-VYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVL 305 (605)
T ss_pred EEEEEE-EcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHH
Confidence 999665 4566632 111 122211 11111 1123455568888888877653
No 50
>PLN02591 tryptophan synthase
Probab=90.98 E-value=0.86 Score=36.15 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHcCCeEeecc-CCcch--HHHHhc
Q psy2348 61 FRETEIFIILAAAESNGLASIPLV-PLYSD--MDFVLK 95 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i-~~~GH--~~~~L~ 95 (131)
+.-||..++.+.|+++||..|+++ .+.-. +..+.+
T Consensus 115 LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~ 152 (250)
T PLN02591 115 LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAE 152 (250)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH
Confidence 556999999999999999999999 66544 556654
No 51
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=90.94 E-value=0.96 Score=38.19 Aligned_cols=109 Identities=16% Similarity=0.089 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEE--eec----cCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeE----eeccCCc
Q psy2348 19 APPSLTYLKEILPILAYTGATSLLIE--WED----TLPYSLG-FDNTNPFRETEIFIILAAAESNGLAS----IPLVPLY 87 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~~g~n~~~l~--~ed----~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~Iev----IP~i~~~ 87 (131)
.-++.+.++++++.++.+|++.++|- |-. ...--|+ ..+...+- .=++.|+++.++.|+.. -|+.=.+
T Consensus 53 ~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 53 FDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp TG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTST-THHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred cCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhC-CcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 34678999999999999999987772 210 0001123 12222222 23999999999999873 4554222
Q ss_pred c------hHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 88 S------DMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 88 G------H~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
+ |-+++++.+..... .+...-+||.++|++.+.+.+.++.+
T Consensus 132 ~S~l~~~hPdw~l~~~~~~~~--~~r~~~vLD~~~pev~~~l~~~i~~l 178 (394)
T PF02065_consen 132 DSDLYREHPDWVLRDPGRPPT--LGRNQYVLDLSNPEVRDYLFEVIDRL 178 (394)
T ss_dssp SSCHCCSSBGGBTCCTTSE-E--CBTTBEEB-TTSHHHHHHHHHHHHHH
T ss_pred hhHHHHhCccceeecCCCCCc--CcccceEEcCCCHHHHHHHHHHHHHH
Confidence 2 44444443322111 12222479999999999988887653
No 52
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=90.89 E-value=0.52 Score=37.45 Aligned_cols=49 Identities=24% Similarity=0.263 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
++++++.+..+|++. +|+.+. .-..+.++-.++++.|++.|.+|+||+-
T Consensus 86 ~~~yl~~~k~lGf~~--IEiSdG---------ti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 86 FDEYLEECKELGFDA--IEISDG---------TIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHHCT-SE--EEE--S---------SS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHHcCCCE--EEecCC---------ceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 445555555555555 333321 1368899999999999999999999986
No 53
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=90.87 E-value=2.9 Score=31.00 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CC-CCCCCCCCCC--CCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 19 APPSLTYLKEILPILAYTGATSLLIEWEDT--LP-YSLGFDNTNP--FRETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p-~~~~~~~~~~--YT~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
.-.+.+.=.+.+..|...|++++++.|..- .. |+.....++. =+.+=|..+++.|.+.|+.|..-+..-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 367778889999999999999999988631 01 1111211111 134568899999999999999877654
No 54
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=90.85 E-value=1.8 Score=39.04 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCCEEEE-Eee--ccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc-CCcchHHHHhc-ccc
Q psy2348 24 TYLKEILPILAYTGATSLLI-EWE--DTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV-PLYSDMDFVLK-VKE 98 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l-~~e--d~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i-~~~GH~~~~L~-~p~ 98 (131)
+..++-|++|...|.|++.+ ++- -.-|=.|. --+|.-|.. .++-|.+.||.||=.- .+.|+-+|..+ ||+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~----fdf~~~D~~-~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pe 104 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGK----FDFTWLDEI-FLERAYKAGLYVILRTGPTGAPPAWLAKKYPE 104 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccccc----cCcccchHH-HHHHHHhcCceEEEecCCCCCCchHHhcCChh
Confidence 88899999999999999988 552 22232221 123333433 6999999999999666 58899999886 887
Q ss_pred ccccccc-----CCCCceecCCChhHHHHHHHHHhhh
Q psy2348 99 FAKMRQN-----FNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 99 ~~~l~e~-----~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
.-...++ ......+||.++-=.+.+..|++++
T Consensus 105 iL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~i 141 (673)
T COG1874 105 ILAVDENGRVRSDGARENICPVSPVYREYLDRILQQI 141 (673)
T ss_pred heEecCCCcccCCCcccccccccHHHHHHHHHHHHHH
Confidence 6543322 1234568999996556666665554
No 55
>PLN02960 alpha-amylase
Probab=90.83 E-value=1 Score=41.77 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=63.5
Q ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEE--eecc-CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348 20 PPSLTYLK-EILPILAYTGATSLLIE--WEDT-LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (131)
Q Consensus 20 ~~~~~~lk-~~i~~la~~g~n~~~l~--~ed~-~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH 89 (131)
+-+...+. +.|+.|+.+|+|.++|- .|.. +...|+ ...+.+=|.+|.|++|+-|-++||.||-.+ .+.|
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv-V~NH 490 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI-VHSY 490 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 33555564 67999999999998762 1110 001122 223335578999999999999999999776 3555
Q ss_pred HHH----Hhcc----c-cccccccc----CCCCceecCCChhHHHHHHHHH
Q psy2348 90 MDF----VLKV----K-EFAKMRQN----FNDTRFICPNARSSLDLVFKMI 127 (131)
Q Consensus 90 ~~~----~L~~----p-~~~~l~e~----~~~~~~lcp~~~~t~~f~~~ll 127 (131)
+.. -|.. + .|-.-... .-....++-+++++.+|+-+.+
T Consensus 491 ~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 491 AAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred cCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 532 1211 1 11110000 0112356778899988887654
No 56
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=90.72 E-value=1.1 Score=35.54 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
..+.++..++++.|+++|..|.||+-.
T Consensus 96 ~i~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 96 EISLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred CCCHHHHHHHHHHHHhCCCeEeccccc
Confidence 688999999999999999999999743
No 57
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=90.71 E-value=0.64 Score=36.91 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
.+..++.+.+++-+.+|..+|+|.++++. +|.. .+..+.|.+.||-|+.|+...||..
T Consensus 29 ~g~a~~~~~~~~d~~l~k~~G~N~iR~~h---~p~~--------------~~~~~~cD~~GilV~~e~~~~~~~~ 86 (298)
T PF02836_consen 29 LGRAMPDEAMERDLELMKEMGFNAIRTHH---YPPS--------------PRFYDLCDELGILVWQEIPLEGHGS 86 (298)
T ss_dssp TBT---HHHHHHHHHHHHHTT-SEEEETT---S--S--------------HHHHHHHHHHT-EEEEE-S-BSCTS
T ss_pred ccccCCHHHHHHHHHHHHhcCcceEEccc---ccCc--------------HHHHHHHhhcCCEEEEeccccccCc
Confidence 45667899999999999999999998821 2211 4678899999999999998866643
No 58
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.23 E-value=1 Score=35.77 Aligned_cols=25 Identities=36% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 61 FRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
+.-||++++++.|+++||+.|+.+-
T Consensus 126 Lp~ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 126 LPPEEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4559999999999999999999553
No 59
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=89.95 E-value=0.82 Score=43.74 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCCEEEE----EeeccC--------CCCCC-----CCCCCCC---CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 28 EILPILAYTGATSLLI----EWEDTL--------PYSLG-----FDNTNPF---RETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l----~~ed~~--------p~~~~-----~~~~~~Y---T~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
+.|+.|.++|+|++.| +..+.. .|.|+ ..-...| |.+|.|++|+-|.++||+||=.+ .+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv-V~ 269 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV-VF 269 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE-cc
Confidence 5678999999999865 221110 12333 1111234 89999999999999999999665 45
Q ss_pred chHHHHhc-----------cccccccc--------ccCCCCceecCCChhHHHHHHHHHh
Q psy2348 88 SDMDFVLK-----------VKEFAKMR--------QNFNDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 88 GH~~~~L~-----------~p~~~~l~--------e~~~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
.|+..--. ...|-... ......+.++-.+|.+.+++.+.+.
T Consensus 270 NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr 329 (1221)
T PRK14510 270 NHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLR 329 (1221)
T ss_pred ccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHH
Confidence 56543211 11111111 0111224556668888888887764
No 60
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=89.57 E-value=4 Score=32.35 Aligned_cols=102 Identities=6% Similarity=0.005 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~ 96 (131)
-...+.+.++++.+...|++++.+ -|.......+|.+|-+++++.+.+. .+.||.-+-...--+.+-..
T Consensus 15 ~iD~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a 86 (285)
T TIGR00674 15 SVDFAALEKLIDFQIENGTDAIVV--------VGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLT 86 (285)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHH
Confidence 367889999999999999999765 1112223478888888888776654 47777766544332322111
Q ss_pred cccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348 97 KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 97 p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
......+-+. ..|..+.+++++.+++.+++.+.
T Consensus 87 ~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 87 KFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEE 122 (285)
T ss_pred HHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhc
Confidence 1111221110 12233445566677777776654
No 61
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.76 E-value=5 Score=31.83 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYS 88 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~G 88 (131)
-...+.++++++.|...|++++.+- |.......+|.+|-+++++.+.+. .+.||.-+-..+
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~~~--------Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~ 81 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLVVV--------GTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNS 81 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC--------CcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCch
Confidence 4678899999999999999997751 212233478888888888777664 366666655444
No 62
>KOG3698|consensus
Probab=88.70 E-value=0.42 Score=42.62 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHH---HHHHHHHHHHcCCeEeecc
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETE---IFIILAAAESNGLASIPLV 84 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~ee---ikeiv~yA~~~~IevIP~i 84 (131)
|.+.+.+.=|.++++|..+|+|+.+--=.|.|.-+..|| .-||.|| ++.+++.|++++|+.|=-|
T Consensus 27 GRPWt~EQRK~LFrrl~~~gl~tYlYAPKDDyKHR~~WR--ElY~vEEa~~L~~Li~aAke~~i~F~YAi 94 (891)
T KOG3698|consen 27 GRPWTPEQRKHLFRRLNQLGLTTYLYAPKDDYKHRSLWR--ELYNVEEATYLRNLIEAAKENNINFVYAI 94 (891)
T ss_pred CCCCCHHHHHHHHHHHHhcccceeeecccchhHHHHHHH--HHhhhHHHHHHHHHHHHHHhcCceEEEEc
Confidence 778899999999999999999964332222221111155 5688776 5678999999999988544
No 63
>PRK03705 glycogen debranching enzyme; Provisional
Probab=88.51 E-value=1.1 Score=40.32 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=59.7
Q ss_pred HHHHHHHcCCCEEEE----Eeecc--------CCCCCC-----CCCCCCCC------HHHHHHHHHHHHHcCCeEeeccC
Q psy2348 29 ILPILAYTGATSLLI----EWEDT--------LPYSLG-----FDNTNPFR------ETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 29 ~i~~la~~g~n~~~l----~~ed~--------~p~~~~-----~~~~~~YT------~eeikeiv~yA~~~~IevIP~i~ 85 (131)
.||.|+.+|+|+++| ++... -.|.|+ ..-.+.|. .+|.|++|+-|.++||+||=.+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv- 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV- 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE-
Confidence 489999999999875 12110 012333 11112332 4799999999999999999776
Q ss_pred CcchHHHH--------hc---cccccccccc------CCCCceecCCChhHHHHHHHHHh
Q psy2348 86 LYSDMDFV--------LK---VKEFAKMRQN------FNDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 86 ~~GH~~~~--------L~---~p~~~~l~e~------~~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
.+.|+... ++ .+.|-.+.+. ....+.++-.+|.+.+++.+.+.
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~ 322 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLR 322 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHH
Confidence 45666532 11 1222211111 11234677789999999887764
No 64
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.51 E-value=5 Score=32.18 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH--c-CCeEeeccCCcchHHHHhccc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES--N-GLASIPLVPLYSDMDFVLKVK 97 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~--~-~IevIP~i~~~GH~~~~L~~p 97 (131)
...+.++++++++...|++++.+ -|.......+|.+|-+++++.+.+ . .+.||.-+-....-+.+-...
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v--------~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~ 89 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISV--------GGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTK 89 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHH
Confidence 67889999999999999999765 121223347999999998886654 2 378887777766666653211
Q ss_pred ccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348 98 EFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 98 ~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
....++-+. ..|.-+.|+.++.+++.+.+.+.
T Consensus 90 ~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 90 FAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADA 124 (294)
T ss_pred HHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHh
Confidence 122222111 12233455666677777777654
No 65
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=88.46 E-value=4.4 Score=34.59 Aligned_cols=72 Identities=6% Similarity=0.098 Sum_probs=54.2
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 9 ~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
.-|.|+-+++. +..-+.....+|+|++++.....-. |. ...+|.++++++.+.++++||.+.|. ..
T Consensus 132 ~iGaHvSiaGG------~~~a~~~a~~~g~~afqiF~~npr~----w~-~~~~~~~~~~~f~~~~~~~gi~~~~i---~~ 197 (413)
T PTZ00372 132 YIGAHVSASGG------VDNSPINAYNIAGQAFALFLKNQRT----WN-SPPLSDETIDKFKENCKKYNYDPKFI---LP 197 (413)
T ss_pred eEEEEEecccc------HHHHHHHHHHcCCCEEEEEcCCCcc----CC-CCCCCHHHHHHHHHHHHHcCCCcceE---Ee
Confidence 45788888764 4557888889999999997754322 33 24899999999999999999986553 33
Q ss_pred hHHHHh
Q psy2348 89 DMDFVL 94 (131)
Q Consensus 89 H~~~~L 94 (131)
|+.+.+
T Consensus 198 HapYlI 203 (413)
T PTZ00372 198 HGSYLI 203 (413)
T ss_pred ecCcee
Confidence 877764
No 66
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=88.10 E-value=4.9 Score=32.01 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK 95 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~ 95 (131)
+-+.+.+++.++.+...|++.+.++......-.........+|.++++++++.|+++|+.|.--....+..+.+++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~ 191 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIR 191 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3457888999999999999999888753211011011223789999999999999999998866655555555554
No 67
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=88.05 E-value=5.8 Score=31.25 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccC
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVP 85 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~ 85 (131)
=...+.++++++.|...|++++.+- |.......+|.+|-+++++.+.+. .+.||.-+-
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~--------GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~ 77 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVC--------GTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG 77 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC--------CCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC
Confidence 3678899999999999999997651 212223467777777777776665 355554443
No 68
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=87.36 E-value=14 Score=33.57 Aligned_cols=118 Identities=11% Similarity=0.083 Sum_probs=71.4
Q ss_pred CCceeEEeecCCCC-C----CHHHHHHHHHHHHHcCCCEEEEEe-ec----------cCCCCCCCC-CCCCCCHHHHHHH
Q psy2348 7 FKEVLVHLDLKGAP-P----SLTYLKEILPILAYTGATSLLIEW-ED----------TLPYSLGFD-NTNPFRETEIFII 69 (131)
Q Consensus 7 f~~Rg~mlD~~~~~-~----~~~~lk~~i~~la~~g~n~~~l~~-ed----------~~p~~~~~~-~~~~YT~eeikei 69 (131)
-..|.+|.|+---. + ....|..+|+.|..+|+|++.|.- .| -||+ .+++ ...-|+.-.. .
T Consensus 312 ~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp~r~d~f~~~aw--~ 388 (671)
T PRK14582 312 SPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLPMRADLFNRVAW--Q 388 (671)
T ss_pred CCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccccccCCcCHHHH--H
Confidence 34799999884222 3 357899999999999999998876 11 1333 1111 1123443222 2
Q ss_pred HHHHHHcCCeEeeccCCcchHHHHhccccccccc-------ccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 70 LAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMR-------QNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 70 v~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~-------e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
.|.++|++|---.++.+=.. --+.+.-..+. -.+....-|.|.+|++.+.|.+++.|+
T Consensus 389 --l~~r~~v~v~AWmp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dl 453 (671)
T PRK14582 389 --LRTRAGVNVYAWMPVLSFDL-DPTLPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDL 453 (671)
T ss_pred --HHHhhCCEEEEeccceeecc-CCCcchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 28889999987777765211 00111111111 011112349999999999999999986
No 69
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=87.31 E-value=1.4 Score=36.03 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 23 LTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
.++-...+++|...|+|++..|+ +..-|-+|... +=-..|++.+++.|++.|+-||=-
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~d---f~g~~dl~~f~~~a~~~gl~vilr 82 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFD---FTGNRDLDRFLDLAQENGLYVILR 82 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB------SGGG-HHHHHHHHHHTT-EEEEE
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCCCCCccc---ccchhhHHHHHHHHHHcCcEEEec
Confidence 77888999999999999997764 43334444311 111379999999999999988843
No 70
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=87.20 E-value=7.8 Score=30.37 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~ 96 (131)
-...+.++++++.|...|++++.+ -|.......+|.+|-+++++.+.+. .+.||--+-...=.+ .++.
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~--------~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~-~i~~ 84 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVV--------LGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE-AIEL 84 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE--------CCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHH-HHHH
Confidence 367788999999999999999765 1212234478999999998887764 366665553322211 2221
Q ss_pred -cccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348 97 -KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 97 -p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
....+++-+. ..|.-+.+++++.+++.+++.+.
T Consensus 85 a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 85 ARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA 121 (281)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc
Confidence 1111221110 11223345667777777777654
No 71
>PLN02417 dihydrodipicolinate synthase
Probab=86.96 E-value=7.3 Score=30.95 Aligned_cols=101 Identities=7% Similarity=0.009 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~ 96 (131)
-...+.++++++++...|++++.+ -|.......+|.+|-+++++.+.+. .+.||.-+-...=.+.+-..
T Consensus 18 ~iD~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a 89 (280)
T PLN02417 18 RFDLEAYDSLVNMQIENGAEGLIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHAT 89 (280)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE--------CccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHH
Confidence 367889999999999999999765 1212233478888888888776654 25555555443333333211
Q ss_pred cccccccccC---CCCceecCCChhHHHHHHHHHh
Q psy2348 97 KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 97 p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
.....++-+. ..|.-..|+.++.+++.+++.+
T Consensus 90 ~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 90 EQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLD 124 (280)
T ss_pred HHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHh
Confidence 1122222110 1122344566677777777654
No 72
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.84 E-value=2.1 Score=34.12 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 61 FRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
+.-||..++.+.|+++||..|+.+.---
T Consensus 128 LP~ee~~~~~~~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 128 LPYEESDYLISVCNLYNIELILLIAPTS 155 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 4458999999999999999999986433
No 73
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=86.66 E-value=11 Score=30.01 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348 21 PSLTYLKEILPILAYT-GATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~-g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~ 96 (131)
...+.++++++.+... |++++.+ -|.......+|.+|-+++++.+.+. .+.||--+-...--+ +++.
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~--------~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~-ai~~ 88 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYV--------NGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKE-SQEL 88 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHH-HHHH
Confidence 6788999999999999 9999765 1212233478888888888877663 355665554433322 2221
Q ss_pred -cccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348 97 -KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 97 -p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
....+.+-+. ..|..+.|++++.+++.+++.+.
T Consensus 89 a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a 125 (288)
T cd00954 89 AKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAA 125 (288)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 1111211110 11223346667788887777654
No 74
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=86.39 E-value=0.62 Score=30.27 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH-hcccccccc
Q psy2348 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV-LKVKEFAKM 102 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~-L~~p~~~~l 102 (131)
.-+...=+++.++||+++|..|+|.= .=.... -+||+|+.+
T Consensus 37 qGia~~L~~~~l~~a~~~~~kv~p~C---~y~~~~~~~hpey~dl 78 (78)
T PF14542_consen 37 QGIAKKLVEAALDYARENGLKVVPTC---SYVAKYFRRHPEYQDL 78 (78)
T ss_dssp TTHHHHHHHHHHHHHHHTT-EEEETS---HHHHHHHHH-GGGTTT
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEEC---HHHHHHHHhCcccccC
Confidence 46788889999999999999999962 222223 358888653
No 75
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=86.31 E-value=1.2 Score=34.85 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
++.+++.++..+.+|++.+.+.-.+ .++.......-....+-+++++++|+++||++.=|
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYD-VYYEEHDEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcc-cccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 4578999999999999988763211 11111000001234577899999999999987655
No 76
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=86.17 E-value=2.4 Score=35.37 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=42.9
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
|+.+-+... +.+..+++|..++.+|++.+. |++.. ....-..+++++|.++|+++|++||.-|+
T Consensus 3 GiSvY~~~~--~~~~~~~yi~~a~~~Gf~~iFTSL~ipe---------~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 3 GISVYPGQS--SFEENKAYIEKAAKYGFKRIFTSLHIPE---------DDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp EEEE-CCCS---HHHHHHHHHHHHCTTEEEEEEEE------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred EEEEeCCCC--CHHHHHHHHHHHHHCCCCEEECCCCcCC---------CCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 555555444 788999999999999998764 22211 11234578999999999999999999885
No 77
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.12 E-value=2.3 Score=32.98 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
++|.--.+.+.++.++.+|+.++.+...+. .. ......+|.++++++.+.++++||+|.-
T Consensus 11 ~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~---~~-~~~~~~~~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 11 ALPKHLSWEERLVFAKELGFDFVEMSVDES---DE-RLARLDWSKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred hcCCCCCHHHHHHHHHHcCCCeEEEecCCc---cc-ccccccCCHHHHHHHHHHHHHcCCCceE
Confidence 444444678999999999999988854321 11 1122357889999999999999999863
No 78
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=86.01 E-value=5.7 Score=30.62 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccC---CCC--C--C-CCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTL---PYS--L--G-FDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~---p~~--~--~-~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
-+.+.++++.+.++.++...+.|---+.+ .|. | + +.+-...|+++++++.+.|+++|+.++
T Consensus 142 d~~e~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 142 LSRENMQQALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 35677888888888776654432111111 000 0 0 333447899999999999999999985
No 79
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=85.38 E-value=4.4 Score=40.24 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEE--ee----ccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIE--WE----DTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~--~e----d~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
+.-++.+.+.+.++.|+.+|+|.+.+- ++ .+..|... -.+..+=|.++.+++++-|.++||.||=.+ .|.
T Consensus 752 ~~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDi-V~N 830 (1693)
T PRK14507 752 HKDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDI-VPN 830 (1693)
T ss_pred CCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence 346789999999999999999997651 11 01112110 112223379999999999999999887655 456
Q ss_pred hHH
Q psy2348 89 DMD 91 (131)
Q Consensus 89 H~~ 91 (131)
|+.
T Consensus 831 H~~ 833 (1693)
T PRK14507 831 HMG 833 (1693)
T ss_pred ccC
Confidence 665
No 80
>PRK15447 putative protease; Provisional
Probab=84.89 E-value=6.7 Score=31.66 Aligned_cols=66 Identities=5% Similarity=-0.037 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE---eeccC-CcchHHHHh
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS---IPLVP-LYSDMDFVL 94 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Iev---IP~i~-~~GH~~~~L 94 (131)
+...+..+...++.-|+..+.+-. ..| + .| ..+|.+|+++++++|+++|.+| +|-|- ..+.+..+.
T Consensus 13 p~~~~~~~~~~~~~~gaDaVY~g~-~~~---~-~R--~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~ 82 (301)
T PRK15447 13 PKETVRDFYQRAADSPVDIVYLGE-TVC---S-KR--RELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELR 82 (301)
T ss_pred CCCCHHHHHHHHHcCCCCEEEECC-ccC---C-Cc--cCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHH
Confidence 344566788888888999877752 222 2 33 2689999999999999999998 56664 355555554
No 81
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=84.85 E-value=11 Score=29.93 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCC
Q psy2348 21 PSLTYLKEILPILAY-TGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPL 86 (131)
Q Consensus 21 ~~~~~lk~~i~~la~-~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~ 86 (131)
...+.++++++++.. .|++++.+ -|.......+|.+|-+++++.+.+. .+.||.-+-.
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYV--------GGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEE--------CCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 678899999999999 99999765 1111122367777777777665542 2555555533
No 82
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=84.57 E-value=3.9 Score=31.90 Aligned_cols=24 Identities=33% Similarity=0.182 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
-||+.++++.|+++|+..|+.+.-
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P 138 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAP 138 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCC
Confidence 479999999999999999998763
No 83
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=84.33 E-value=6.1 Score=30.74 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc---hHHHHhc
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS---DMDFVLK 95 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G---H~~~~L~ 95 (131)
+....++++.++..|++++.++- -|++ +-++.++++++|+++|++++++++.-- -++.+++
T Consensus 87 ~~~~~~~i~~~~~~Gadgvii~d---lp~e---------~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~ 150 (244)
T PRK13125 87 VDSLDNFLNMARDVGADGVLFPD---LLID---------YPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK 150 (244)
T ss_pred hhCHHHHHHHHHHcCCCEEEECC---CCCC---------cHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence 44567788899999999988841 1121 136899999999999999999998833 4555555
No 84
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=84.30 E-value=3.1 Score=33.84 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
+.-++.+.++++++.++.+|...+.+ . +|.++-..++.+|+++|+++|+.+ .+.|=|.+
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~~v~~--------~----GGEPll~~~~~~ii~~~~~~g~~~--~l~TNG~l 92 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVLQLHF--------S----GGEPLARPDLVELVAHARRLGLYT--NLITSGVG 92 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCcEEEE--------e----CccccccccHHHHHHHHHHcCCeE--EEEeCCcc
Confidence 45688999999999999988754333 1 234555667999999999999754 67888863
No 85
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=84.19 E-value=5.8 Score=30.39 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
.+.+++.|+..+.+|++.+.+.... -|.............+-++++.++|++.||.+.=|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~-~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE 142 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGK-RPAGVSPEEARATLVENLRYAADALDRIGLTLLIE 142 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5788999999999999987663311 01100000000122356899999999999998866
No 86
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=84.08 E-value=2.9 Score=34.44 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCC---CCC---CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLG---FDN---TNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~---~~~---~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
|.+++++|+.=-|.+.+-+ |+.|..+ +.+ ....|++|+.+..+||++.|++-+.
T Consensus 274 kpI~~wiae~~g~~~~vNi--M~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 274 KPILRWIAENLGNDVRVNI--MFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred HHHHHHHHHhCCCCeeEEe--hhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCceee
Confidence 6788888887655544433 4444332 111 2489999999999999999998764
No 87
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.99 E-value=6.4 Score=31.01 Aligned_cols=69 Identities=20% Similarity=0.121 Sum_probs=50.2
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH 89 (131)
-|.|+-+++ -+.+-++.++++|++++++..+...- |. ...+|.++++++-+.++++++.+.+ +.-|
T Consensus 3 ~g~h~s~~g------~~~~a~~~~~~~G~~~~qif~~~P~~----w~-~~~~~~~~~~~~~~~~~~~~~~~~~---i~~H 68 (274)
T TIGR00587 3 LGAHVSAAG------GLQAAYNRAAEIGATAFMFFLKSPRW----WR-RPMLEEEVIDWFKAALETNKNLSQI---VLVH 68 (274)
T ss_pred eEEEEeccC------CHHHHHHHHHHhCCCEEEEEecCccc----cC-CCCCCHHHHHHHHHHHHHcCCCCcc---eecc
Confidence 467777775 35678999999999999996654221 32 3478999999999999999987433 2445
Q ss_pred HHH
Q psy2348 90 MDF 92 (131)
Q Consensus 90 ~~~ 92 (131)
+-+
T Consensus 69 apy 71 (274)
T TIGR00587 69 APY 71 (274)
T ss_pred CCe
Confidence 444
No 88
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=83.91 E-value=4 Score=33.52 Aligned_cols=59 Identities=22% Similarity=0.134 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
+..++.+.++++|+.++..|...+.+ . +|.++...++.+|+++|+++|+.+ .+.|=|.+
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~~~v~~--------~----GGEPll~~~~~~il~~~~~~g~~~--~i~TNG~l 101 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGALQLHF--------S----GGEPLLRKDLEELVAHARELGLYT--NLITSGVG 101 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEE--------E----CCccCCchhHHHHHHHHHHcCCcE--EEECCCcc
Confidence 45688999999999999988644332 1 245666778999999999999755 57888863
No 89
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=83.45 E-value=1 Score=32.70 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
++.+++.++..+.+|+..+.+..-. ++.... ....-....+-++++.++|+++|++|.-|--
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~ 133 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR-YPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH 133 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT-ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc-cccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc
Confidence 8899999999999999988886431 111110 0001134456889999999999999887743
No 90
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=83.44 E-value=5 Score=38.28 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEE--ee----cc--------------CCC-CCC-----CCCCCCC---------CHHH
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIE--WE----DT--------------LPY-SLG-----FDNTNPF---------RETE 65 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~--~e----d~--------------~p~-~~~-----~~~~~~Y---------T~ee 65 (131)
=+...|.+-|+.|+.+|+|.++|- ++ +- -.| .|+ ..-.+.| +.+|
T Consensus 477 Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 477 GTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAE 556 (1111)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHH
Confidence 355566667899999999998652 11 10 012 233 1111233 2589
Q ss_pred HHHHHHHHHHcCCeEeeccCCcchHHHH--hc--ccccccccc-cCC-----CCceecCCChhHHHHHHHHHh
Q psy2348 66 IFIILAAAESNGLASIPLVPLYSDMDFV--LK--VKEFAKMRQ-NFN-----DTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 66 ikeiv~yA~~~~IevIP~i~~~GH~~~~--L~--~p~~~~l~e-~~~-----~~~~lcp~~~~t~~f~~~ll~ 128 (131)
.|++|+-|.++||.||=.+ .+-|+... +. .|.|-+... .+. ..+.+...++.+.++|-+.+.
T Consensus 557 fK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~ 628 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIK 628 (1111)
T ss_pred HHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHH
Confidence 9999999999999999665 56776432 11 233332211 111 123344556777787776553
No 91
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=83.33 E-value=4.4 Score=32.02 Aligned_cols=28 Identities=25% Similarity=0.200 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 61 FRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
..-+|..++++.|+++|+..|+.+.-=-
T Consensus 124 lp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 124 LPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred CChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3448999999999999999998886433
No 92
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=82.76 E-value=15 Score=29.39 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348 21 PSLTYLKEILPILAYTG-ATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g-~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~ 96 (131)
...+.++++++.+...| ++++.+ -|.......+|.||-+++++.+.+. .+.||.-+-..+ +...++.
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~--------~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~-t~~~i~l 88 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYV--------GGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVN-LKEAVEL 88 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEE--------CCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC-HHHHHHH
Confidence 67788999999999999 998765 1111223467777777777766554 355555443333 2222322
Q ss_pred ccc-ccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348 97 KEF-AKMRQNF---NDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 97 p~~-~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
-++ ..++-+. ..|.-++++.++.+++.+++.+.
T Consensus 89 a~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~ 125 (290)
T TIGR00683 89 GKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAE 125 (290)
T ss_pred HHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhh
Confidence 111 1111110 12334455566677777666553
No 93
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=82.74 E-value=4.9 Score=31.09 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 25 ~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
-+.+.++.++++|++++.+.... |.. . ..-.++.+++++-+.++++||+|+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~--~~~--~--~~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR--PHA--F--APDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC--ccc--c--ccccCchHHHHHHHHHHHcCCeEE
Confidence 37899999999999998773211 100 1 113577899999999999999985
No 94
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=82.52 E-value=6.8 Score=30.51 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeEe
Q psy2348 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN-GLASI 81 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~-~IevI 81 (131)
..+.+.++.++++|+.++.+.+.....+ .. ...|.++++++.+.++++ ++.+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~i~ 63 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSW----LS-RPLKKERAEKFKAIAEEGPSICLS 63 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCcc----CC-CCCCHHHHHHHHHHHHHcCCCcEE
Confidence 4467788888888888877765432211 11 234777777777777777 55554
No 95
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=82.23 E-value=5.5 Score=31.68 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.+.-+.++.|++.++....-+...-.+.+.. |+ -+.|..+|.+++++|++.|+++++-||
T Consensus 126 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~--p~---nPtG~~~~~~~l~~l~~~~~~~~~~ii 185 (363)
T PF00155_consen 126 NDFHLDPEALEEALDELPSKGPRPKAVLICN--PN---NPTGSVLSLEELRELAELAREYNIIII 185 (363)
T ss_dssp TTTEETHHHHHHHHHTSHTTTETEEEEEEES--SB---TTTTBB--HHHHHHHHHHHHHTTSEEE
T ss_pred ccccccccccccccccccccccccceeeecc--cc---cccccccccccccchhhhhccccccee
Confidence 4667778888877777665554222233332 22 234568999999999999999999988
No 96
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=81.93 E-value=2 Score=29.77 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=37.4
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-e
Q psy2348 13 HLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-P 82 (131)
Q Consensus 13 mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI-P 82 (131)
-+|+.--+-+.+.+-++++.+...|...+++.- | ++-.+++++|++.||+++ |
T Consensus 55 ~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~-------------g----~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 55 PIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQP-------------G----AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp T-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-T-------------T----S--HHHHHHHHHTT-EEEES
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEc-------------c----hHHHHHHHHHHHcCCEEEeC
Confidence 456666667788899999999999999988832 1 455789999999999999 6
No 97
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=81.85 E-value=17 Score=28.89 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLK 95 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~ 95 (131)
-...+.++++++.+...|++++.+ -|.......+|.||-+++++.+.+. .+.||.-+-. -+...++
T Consensus 17 ~iD~~~l~~l~~~l~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~--~t~~~i~ 85 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYGAAALFA--------AGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY--GTATAIA 85 (289)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC--CHHHHHH
Confidence 467788999999999999999765 1212233478999999998877664 4778877743 3444443
No 98
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=81.73 E-value=5 Score=33.58 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=67.4
Q ss_pred CCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCC--CCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 5 STFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLP--YSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 5 P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p--~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
|+++. |+++ ++-...+-+.++++++.+...++--=.+.+++.+- +...--+...+- +.+++++..+++|+.+++
T Consensus 26 P~wal-G~~~-~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FP--d~~~~~~~l~~~G~~~~~ 101 (441)
T PF01055_consen 26 PRWAL-GFWQ-SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFP--DPKQMIDELHDQGIKVVL 101 (441)
T ss_dssp -GGGG-SEEE-EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTT--THHHHHHHHHHTT-EEEE
T ss_pred chhhh-ceEe-ecCcCCCHHHHHHHHHHHHHcCCCccceecccccccccccccccccccc--chHHHHHhHhhCCcEEEE
Confidence 55555 8888 44455679999999999999998543333433221 111011222332 889999999999999987
Q ss_pred ccCCcchHHHHhccccccccc--------c---------cCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 83 LVPLYSDMDFVLKVKEFAKMR--------Q---------NFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 83 ~i~~~GH~~~~L~~p~~~~l~--------e---------~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
-++-.=+...- .++.|.+.. . ++.....++.+||++.+...+.++++
T Consensus 102 ~~~P~v~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 165 (441)
T PF01055_consen 102 WVHPFVSNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKEL 165 (441)
T ss_dssp EEESEEETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHH
T ss_pred EeecccCCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHH
Confidence 66542222211 011111111 0 11123568899999999997777654
No 99
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=81.33 E-value=6 Score=31.22 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCEEEEEeec----------cCCCCCC--CC--------CCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 29 ILPILAYTGATSLLIEWED----------TLPYSLG--FD--------NTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed----------~~p~~~~--~~--------~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
+|+..++-|++.+-+.+-. ..+|... +. ..-.+|.++.++|.+||+++||..+=..--+.
T Consensus 1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd~~ 80 (241)
T PF03102_consen 1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFDEE 80 (241)
T ss_dssp HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-SHH
T ss_pred CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCCHH
Confidence 5788889999987665521 1233221 01 11259999999999999999999988777777
Q ss_pred hHHHHhc
Q psy2348 89 DMDFVLK 95 (131)
Q Consensus 89 H~~~~L~ 95 (131)
=.+++.+
T Consensus 81 s~d~l~~ 87 (241)
T PF03102_consen 81 SVDFLEE 87 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777644
No 100
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=81.26 E-value=1.9 Score=34.43 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=61.4
Q ss_pred eeEEeecCCCCCCHHHHH------HHHHHHHHcCCCEEEEEeeccCCCCCC---C-------------------------
Q psy2348 10 VLVHLDLKGAPPSLTYLK------EILPILAYTGATSLLIEWEDTLPYSLG---F------------------------- 55 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk------~~i~~la~~g~n~~~l~~ed~~p~~~~---~------------------------- 55 (131)
.++..-++++-|+..-+. ++.......|+..+-+=.|..| |.|. +
T Consensus 46 ~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~-F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~ 124 (254)
T COG0134 46 PAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKY-FQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYE 124 (254)
T ss_pred ceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccc-cCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHH
Confidence 445555666656554333 3455667788888877666544 4444 0
Q ss_pred -CC--C-------CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 56 -DN--T-------NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 56 -~~--~-------~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
+. . ..++++++++++++|.++|++++=|+..--+++.+++.
T Consensus 125 Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ 175 (254)
T COG0134 125 ARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKL 175 (254)
T ss_pred HHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhC
Confidence 01 1 26999999999999999999999999999999999873
No 101
>PLN02877 alpha-amylase/limit dextrinase
Probab=81.10 E-value=4.7 Score=37.94 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
..|.|++|+-|.++||+||-.+ .+-|+
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt 491 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHL 491 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCccc
Confidence 4699999999999999999765 56676
No 102
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=81.10 E-value=5.9 Score=32.08 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=38.4
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
-.+||| |-.+.+.+++-| ..|++++++-=. ..||+ -..+.-|+++++|..+|+.|=-|+=..
T Consensus 77 V~lHLD---H~~~~e~i~~Ai----~~GftSVM~DgS-~l~~e--------eNi~~T~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 77 VSLHLD---HGKTFEDVKQAV----RAGFTSVMIDGA-ALPFE--------ENIAFTKEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred EEEECc---CCCCHHHHHHHH----HcCCCEEEEeCC-CCCHH--------HHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 356777 445666666655 347877776111 01211 245678999999999999885555444
No 103
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=81.03 E-value=6.1 Score=31.40 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 31 PILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 31 ~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
..-..+|++.+.|-. ..++.+++++++++|.+.|++++=|+-+.--++.+++.
T Consensus 118 ~ea~~~GADavLLI~-------------~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ 170 (247)
T PRK13957 118 REARAFGASAILLIV-------------RILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDC 170 (247)
T ss_pred HHHHHcCCCEEEeEH-------------hhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhC
Confidence 334446666665522 47899999999999999999999999999999999874
No 104
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=80.98 E-value=3.6 Score=32.07 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=45.2
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
|+.-|+++|....- ..+-+-++++...++.-+.+.+-. + -+.++|.+|+.++.+|+....+.|+
T Consensus 132 ~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv-------N---l~~YLt~eei~el~~~i~~~~~~vl 195 (216)
T TIGR01866 132 IKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI-------N---SGAFLTKDELAELQKFISYTKLTVL 195 (216)
T ss_pred HHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE-------c---HHHhCCHHHHHHHHHHHHHhcccEE
Confidence 34557788875443 556666666666666655544422 2 2479999999999999999999887
No 105
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=80.62 E-value=8.7 Score=26.70 Aligned_cols=52 Identities=29% Similarity=0.279 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
.+.++++|+.|+..|+.++.+...+.+ .+++ ++++++|.++++ |.|.+|-+.
T Consensus 58 ~~~~~~~i~~L~~~~~agL~i~~~~~~---~~iP----------~~~i~~A~~~~l---Pli~ip~~~ 109 (123)
T PF07905_consen 58 EEELREFIRELAEKGAAGLGIKTGRYL---DEIP----------EEIIELADELGL---PLIEIPWEV 109 (123)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeccCcc---ccCC----------HHHHHHHHHcCC---CEEEeCCCC
Confidence 346999999999999999998775322 2233 689999999997 444555433
No 106
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=80.51 E-value=7.8 Score=32.24 Aligned_cols=74 Identities=15% Similarity=0.009 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEE-eecc-CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeecc--CCcch
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIE-WEDT-LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLV--PLYSD 89 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~-~ed~-~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i--~~~GH 89 (131)
.-++.-|.+-+|.+..+|++.+.|- +-.. ..+-|+ --+..+=|.+|.+++++-|.+|||.||--+ +..|.
T Consensus 25 ~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~ 104 (505)
T COG0366 25 GGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSD 104 (505)
T ss_pred cccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCC
Confidence 3566677799999999999997651 1111 112222 112456799999999999999999999877 44444
Q ss_pred HHHH
Q psy2348 90 MDFV 93 (131)
Q Consensus 90 ~~~~ 93 (131)
...+
T Consensus 105 ~~~~ 108 (505)
T COG0366 105 EHPW 108 (505)
T ss_pred ccHH
Confidence 4443
No 107
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=80.28 E-value=2.8 Score=34.85 Aligned_cols=37 Identities=16% Similarity=0.025 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2348 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK 95 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~ 95 (131)
.-+|.+|++++++||.++|..+.=.++++=|....-.
T Consensus 44 ~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~ 80 (347)
T COG0826 44 LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELET 80 (347)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhH
Confidence 3699999999999999999999999999988776654
No 108
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=80.14 E-value=17 Score=30.80 Aligned_cols=56 Identities=9% Similarity=-0.084 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
++++.+++.+.....-|.+.-.+.+ +.| . -+-|.-||++++++|++.|++++|-||
T Consensus 182 ~~~~~le~a~~~a~~~~~~vk~lll--~nP--~-NPtG~~~s~e~l~~l~~~~~~~~i~lI 237 (447)
T PLN02607 182 VTPQALEAAYQEAEAANIRVRGVLI--TNP--S-NPLGATVQRSVLEDILDFVVRKNIHLV 237 (447)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEEEE--eCC--C-CCcCcccCHHHHHHHHHHHHHCCCEEE
Confidence 6888888887765555554322333 222 1 234568999999999999999999987
No 109
>KOG4175|consensus
Probab=80.03 E-value=6 Score=31.19 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 61 FRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
+-.||...+-.+|++.||++||++-
T Consensus 132 lPpEEa~~~Rne~~k~gislvpLva 156 (268)
T KOG4175|consen 132 LPPEEAETLRNEARKHGISLVPLVA 156 (268)
T ss_pred CChHHHHHHHHHHHhcCceEEEeeC
Confidence 5578888888899999999998873
No 110
>TIGR03586 PseI pseudaminic acid synthase.
Probab=79.95 E-value=6.2 Score=32.56 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEe--eccC-------CCCC---CCC--------CCCCCCHHHHHHHHHHHHHcC
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEW--EDTL-------PYSL---GFD--------NTNPFRETEIFIILAAAESNG 77 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~--ed~~-------p~~~---~~~--------~~~~YT~eeikeiv~yA~~~~ 77 (131)
+|-=+++..|++|+..++-|++.+-+.. .+++ +|.. .+. .+-.++.++.++|.+||++.|
T Consensus 11 NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 11 NHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELG 90 (327)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhC
Confidence 7777999999999999999999765544 2221 1210 011 012467899999999999999
Q ss_pred CeEeeccCCcchHHHHhcc
Q psy2348 78 LASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 78 IevIP~i~~~GH~~~~L~~ 96 (131)
|.++=++=-..+.+.+..+
T Consensus 91 i~~~stpfd~~svd~l~~~ 109 (327)
T TIGR03586 91 LTIFSSPFDETAVDFLESL 109 (327)
T ss_pred CcEEEccCCHHHHHHHHHc
Confidence 9999999999999887553
No 111
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.84 E-value=7.2 Score=30.34 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 25 ~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.+.+.++.++..|+.++.+...+. .. ......++.+++++|-+.++++||+|.-
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~---~~-~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDES---DE-RLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCcc---cc-chhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 467899999999999988854331 11 1122357899999999999999999853
No 112
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.64 E-value=11 Score=29.19 Aligned_cols=57 Identities=16% Similarity=0.002 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCC---CCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNT---NPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~---~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
++.+++.|+..+.+|+..+++..-. .+..... -.-+.+-++++.++|++.||++.=|
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAH----AGYLTPPNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 5688899999999999988773211 1100000 0011234899999999999999755
No 113
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=79.15 E-value=11 Score=29.67 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH---cCCeEeeccCCcchHHHHhcc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES---NGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~---~~IevIP~i~~~GH~~~~L~~ 96 (131)
=...+.++++++.+...|++++.+ -|.......+|.+|-++|++.+.+ -.+.||.-+-...--+.+=..
T Consensus 18 ~id~~~~~~~i~~l~~~Gv~gl~~--------~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a 89 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEAGVDGLVV--------LGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELA 89 (289)
T ss_dssp SB-HHHHHHHHHHHHHTTSSEEEE--------SSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE--------CCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHH
Confidence 356788999999999999999776 121112236788888887777655 346677666554433333111
Q ss_pred cccccccccC---CCCceecCCChhHHHHHHHHHh
Q psy2348 97 KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 97 p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
.....++-+. ..|.-..++.++.+++.+++.+
T Consensus 90 ~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 90 RHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp HHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHH
T ss_pred HHHhhcCceEEEEeccccccchhhHHHHHHHHHHh
Confidence 1111221110 0122334556667777776664
No 114
>PRK04302 triosephosphate isomerase; Provisional
Probab=79.11 E-value=9.1 Score=29.29 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
....+|+++++..|++.|+++|.++.+.--+..+
T Consensus 97 ~~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~~ 130 (223)
T PRK04302 97 RLTLADIEAVVERAKKLGLESVVCVNNPETSAAA 130 (223)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH
Confidence 3667889999999999999999888885544444
No 115
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=78.73 E-value=7 Score=31.47 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 61 FRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
+-.||-.++..+|+++||..||.+-
T Consensus 131 LP~ee~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 131 LPPEESDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEeC
Confidence 5678888999999999999999884
No 116
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=78.51 E-value=25 Score=27.91 Aligned_cols=59 Identities=14% Similarity=-0.062 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
=...+.++++++++...|++++.+ -|.......+|.+|-+++++.+.+..=.||.-+-.
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~--------~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~ 74 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFV--------AGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGS 74 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEE--------cccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCc
Confidence 356788999999999999999765 12122334799999999998887755456665543
No 117
>PRK10150 beta-D-glucuronidase; Provisional
Probab=78.45 E-value=8 Score=33.98 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
.+..++.+...+-+.+|..+|+|.+++.. +|.. .++.+.|.+.||-|+-|+.+-|
T Consensus 306 ~G~a~~~~~~~~d~~l~K~~G~N~vR~sh---~p~~--------------~~~~~~cD~~GllV~~E~p~~~ 360 (604)
T PRK10150 306 RGKGLDEVLNVHDHNLMKWIGANSFRTSH---YPYS--------------EEMLDLADRHGIVVIDETPAVG 360 (604)
T ss_pred cCCcCCHHHHHHHHHHHHHCCCCEEEecc---CCCC--------------HHHHHHHHhcCcEEEEeccccc
Confidence 46678888889999999999999998832 3321 2678999999999999987543
No 118
>PLN02161 beta-amylase
Probab=78.09 E-value=12 Score=32.98 Aligned_cols=64 Identities=14% Similarity=0.002 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
.+-+.+.|+..+..|+..|+.++++.. |.|. -.+++-|.-.=.+++.+.+++.|+.+.|-+-+=
T Consensus 112 ~v~~~~al~~~L~~LK~~GVdGVmvDV-----WWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFH 177 (531)
T PLN02161 112 KIKRLKALTVSLKALKLAGVHGIAVEV-----WWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFH 177 (531)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEe-----eeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 688999999999999999999998864 4454 224568888889999999999999999987653
No 119
>PLN02803 beta-amylase
Probab=78.00 E-value=14 Score=32.76 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
+.+-+.+.|+..+..|+..|+.++++.. |.|. -.+++-|.-.=.+++.+.+++.|+.|.|-+-+
T Consensus 101 ~~~~~~~~l~~~L~~LK~~GVdGVmvDV-----WWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSF 166 (548)
T PLN02803 101 GNLNKPRAMNASLMALRSAGVEGVMVDA-----WWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSF 166 (548)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEEe-----eeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEe
Confidence 5788889999999999999999998865 4554 22456888899999999999999999997654
No 120
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=77.87 E-value=28 Score=27.74 Aligned_cols=66 Identities=14% Similarity=0.010 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLK 95 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~ 95 (131)
=...+.++++++.+...|++++.+ -|.....-.+|.+|-+++++.+.+. .+.||.-+-. . +...++
T Consensus 22 ~iD~~~l~~li~~l~~~Gv~gi~v--------~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~-t~~ai~ 90 (296)
T TIGR03249 22 SFDEAAYRENIEWLLGYGLEALFA--------AGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-N-TSDAIE 90 (296)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEE--------CCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-c-HHHHHH
Confidence 367888999999999999999765 1212223478999998888866552 4777777742 3 555543
No 121
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=77.68 E-value=7 Score=32.77 Aligned_cols=63 Identities=21% Similarity=0.142 Sum_probs=43.3
Q ss_pred ec-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 15 DL-KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 15 D~-~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
|- +.+..+.-.+.+.++.++.+|+.++.+...+-+||.... .-....+++|-+.++++|+.|+
T Consensus 22 ~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~----~e~~~~~~~lk~~L~~~GL~v~ 85 (382)
T TIGR02631 22 DPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPP----QERDQIVRRFKKALDETGLKVP 85 (382)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCCh----hHHHHHHHHHHHHHHHhCCeEE
Confidence 44 333233345678999999999999988766666764310 0113447889999999999965
No 122
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=77.51 E-value=22 Score=28.35 Aligned_cols=71 Identities=21% Similarity=0.149 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeec--cCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWED--TLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed--~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
-+.+.+.++...|++.|+..++.+.++ |.|+. +++- -.+.++.+-++|++.||.++=++=-+-+.+.+...
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s--~~G~---g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~ 110 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYS--FQGL---GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY 110 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCc--cCCc---HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh
Confidence 467888888999999999988888775 23331 3321 29999999999999999999999999999999654
No 123
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=77.48 E-value=30 Score=27.78 Aligned_cols=100 Identities=13% Similarity=-0.008 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~ 96 (131)
-...+.++++++.+...|++++.+ -|.......+|.||-+++++-+.+. .+.||.-+-. =+...+..
T Consensus 24 ~iD~~~l~~li~~l~~~Gv~Gi~~--------~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~--~t~~~i~~ 93 (303)
T PRK03620 24 SFDEAAYREHLEWLAPYGAAALFA--------AGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG--GTAQAIEY 93 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC--CHHHHHHH
Confidence 467889999999999999999765 1212223478999998888866543 4778877732 23344332
Q ss_pred cc-cccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348 97 KE-FAKMRQNF---NDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 97 p~-~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
-+ ...++-+. ..|.-..++.++.+++.+++.+.
T Consensus 94 ~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~ 130 (303)
T PRK03620 94 AQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKS 130 (303)
T ss_pred HHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 11 11221110 11222344555677777766554
No 124
>PRK13604 luxD acyl transferase; Provisional
Probab=77.45 E-value=21 Score=29.27 Aligned_cols=76 Identities=11% Similarity=0.078 Sum_probs=51.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccC-CCCCCCCC-CCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 16 LKGAPPSLTYLKEILPILAYTGATSLLIEWEDTL-PYSLGFDN-TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 16 ~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~-p~~~~~~~-~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
+.+.--+.+...++.+.|+..|+|.++.-+.... .=.|++.. .-.+-.+|+..+++|+++++. ..|=+.||++-.
T Consensus 43 ~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~~---~~I~LiG~SmGg 119 (307)
T PRK13604 43 ASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRGI---NNLGLIAASLSA 119 (307)
T ss_pred eCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcCC---CceEEEEECHHH
Confidence 5444445567999999999999999887542211 00121110 112457899999999999754 568899998866
Q ss_pred h
Q psy2348 94 L 94 (131)
Q Consensus 94 L 94 (131)
.
T Consensus 120 a 120 (307)
T PRK13604 120 R 120 (307)
T ss_pred H
Confidence 4
No 125
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=77.17 E-value=3.4 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 61 FRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i 84 (131)
=|.+|+++++++|.++++.|.|.=
T Consensus 8 ~s~~ev~~~v~~a~~~~~~v~~~g 31 (139)
T PF01565_consen 8 KSVEEVQAIVKFANENGVPVRVRG 31 (139)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEc
Confidence 378999999999999999999864
No 126
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=77.10 E-value=7.7 Score=30.90 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 28 EILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
.+|..-..+|++.+.|-. ..++.+++++++++|.+.|++++=||-+.-.++.++..
T Consensus 122 ~QI~eA~~~GADaVLLI~-------------~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~ 177 (254)
T PF00218_consen 122 YQIYEARAAGADAVLLIA-------------AILSDDQLEELLELAHSLGLEALVEVHNEEELERALEA 177 (254)
T ss_dssp HHHHHHHHTT-SEEEEEG-------------GGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEeehhH-------------HhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHc
Confidence 344555667777776622 48999999999999999999999999999999999864
No 127
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=77.10 E-value=3 Score=34.89 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
-|.-||++++++|+++|++++|-||=
T Consensus 176 TGav~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 176 TGAVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred cCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 35689999999999999999998874
No 128
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=77.07 E-value=9.7 Score=29.69 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
-.+.+.++.+++.|+.++.+-+.+. .. ......+|.++++++.+.++++||+|.-
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDET---DD-RLSRLDWSREQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCc---cc-hhhccCCCHHHHHHHHHHHHHcCCCcee
Confidence 3466788999999999988844321 11 1222357899999999999999999863
No 129
>TIGR03356 BGL beta-galactosidase.
Probab=76.59 E-value=9.5 Score=32.32 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCH---HHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 23 LTYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRE---TEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~---eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
-...++=|++|+++|+|.+++ .|..-+|- | .+.+.+ +-.+++++.|.++||++|..+--++
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~-g----~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSIAWPRIFPE-G----TGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEcccchhhcccC-C----CCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 366789999999999999885 55555553 1 134554 5567999999999999998874333
No 130
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=76.46 E-value=11 Score=29.83 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCe------------------------Eeecc
Q psy2348 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLA------------------------SIPLV 84 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Ie------------------------vIP~i 84 (131)
..+.++..|+.-+++..|+ +.++.+++.+++..|+..|++ ++|-|
T Consensus 32 ~~e~~a~~G~D~v~iD~EH-----------g~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v 100 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEH-----------APNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFV 100 (256)
T ss_pred HHHHHHhcCCCEEEEcccc-----------CCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCc
Confidence 4455666677777776665 244444454444444444332 77888
Q ss_pred CCcchHHHHhccccc
Q psy2348 85 PLYSDMDFVLKVKEF 99 (131)
Q Consensus 85 ~~~GH~~~~L~~p~~ 99 (131)
++.-..+.+.++=+|
T Consensus 101 ~tae~a~~~v~a~ky 115 (256)
T PRK10558 101 ETAEEARRAVASTRY 115 (256)
T ss_pred CCHHHHHHHHHHcCC
Confidence 888888887653333
No 131
>PLN02801 beta-amylase
Probab=76.11 E-value=17 Score=31.97 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
+.+-+.+.|+..+..|+..|+.++++.. |.|. -.+.+-|.-.=.+++.+.+++.|+.+.|-+-+
T Consensus 31 ~~l~~~~~l~~~L~~LK~~GVdGVmvDV-----WWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSF 96 (517)
T PLN02801 31 NVLEDEEGLEKQLKRLKEAGVDGVMVDV-----WWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSF 96 (517)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEEee-----eeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEe
Confidence 7788999999999999999999998865 4554 22456899999999999999999999887654
No 132
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=75.30 E-value=6.4 Score=34.13 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=52.5
Q ss_pred EEeecC-CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-C--C--CCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 12 VHLDLK-GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-F--D--NTNPFRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 12 ~mlD~~-~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-~--~--~~~~YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
-+.|+= +..--.+++++.+......|+.+++| |..+|--+ . . .-..=|-+-+|++.+.+...+..||+|+.
T Consensus 156 ~QpDLN~~np~v~e~i~~il~fwl~~GvdgfRL---DAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~ 232 (470)
T TIGR03852 156 EQIDLDVTSETTKRFIRDNLENLAEHGASIIRL---DAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIH 232 (470)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHcCCCEEEE---ecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhh
Confidence 366662 34666788889999999999999999 55554221 1 0 11145888999999999999999999993
No 133
>KOG0259|consensus
Probab=75.20 E-value=3.5 Score=35.20 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~ 92 (131)
.|+.||.+-+++|.+.|+++||.||-- +..||+-+
T Consensus 212 cGnVys~~HL~kiae~A~klgi~vIaD-EVY~~~vf 246 (447)
T KOG0259|consen 212 CGNVYSEDHLKKIAETAKKLGIMVIAD-EVYGHTVF 246 (447)
T ss_pred CcccccHHHHHHHHHHHHHhCCeEEeh-hhcceeec
Confidence 478999999999999999999999964 66777644
No 134
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=75.13 E-value=11 Score=34.30 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=58.9
Q ss_pred HHHHHHcCCCEEEE----Eeec--cC------CCCCC-----CCCCCCC--------CHHHHHHHHHHHHHcCCeEeecc
Q psy2348 30 LPILAYTGATSLLI----EWED--TL------PYSLG-----FDNTNPF--------RETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 30 i~~la~~g~n~~~l----~~ed--~~------p~~~~-----~~~~~~Y--------T~eeikeiv~yA~~~~IevIP~i 84 (131)
|+.|+.+|+|.++| ++.+ .- =|.|+ +...+.| -..|.|.+|+-.-++||+||=-|
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999998854 2221 11 13444 1111122 24599999999999999999766
Q ss_pred CCcchHHH------H--hc--ccc-cccccc------cCCCCceecCCChhHHHHHHHHH
Q psy2348 85 PLYSDMDF------V--LK--VKE-FAKMRQ------NFNDTRFICPNARSSLDLVFKMI 127 (131)
Q Consensus 85 ~~~GH~~~------~--L~--~p~-~~~l~e------~~~~~~~lcp~~~~t~~f~~~ll 127 (131)
.+=|+-. . ++ -|. |--+.. .....++++-.+|-+.++|-|-|
T Consensus 286 -VfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsL 344 (697)
T COG1523 286 -VFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSL 344 (697)
T ss_pred -eccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHH
Confidence 5667631 1 11 122 111111 12345788888999999887654
No 135
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=74.91 E-value=13 Score=30.70 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
+.+++.|+..|+|.++|..-. -|+. +|..+.+.+.++..-|++.|+.|.-.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv-~P~~-----~g~~~~~~~~~~akrak~~Gm~vlldf 78 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWV-NPYD-----GGYNDLEDVIALAKRAKAAGMKVLLDF 78 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-S-S-TT-----TTTTSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHhcCCCeEEEEecc-CCcc-----cccCCHHHHHHHHHHHHHCCCeEEEee
Confidence 568999999999999997632 2444 479999999999999999999998544
No 136
>PLN00197 beta-amylase; Provisional
Probab=74.44 E-value=19 Score=32.04 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
+.+-+.+.|+..+..|+..|+.++++.. |.|. -.+++-|.-.=.+++.+.+++.|+.|.|-+-.
T Consensus 121 ~~l~~~~~l~~~L~~LK~~GVdGVmvDv-----WWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSF 186 (573)
T PLN00197 121 NTVNRRKAMKASLQALKSAGVEGIMMDV-----WWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSF 186 (573)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEee-----eeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEe
Confidence 6788899999999999999999998864 4454 22456888889999999999999999997654
No 137
>PLN02721 threonine aldolase
Probab=74.41 E-value=14 Score=29.11 Aligned_cols=58 Identities=16% Similarity=-0.011 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHcCC-CEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 21 PSLTYLKEILPILAYTGA-TSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~-n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
+.++.+++.|+....-+. ++-.+.++.+..-. .|..++.+++++|.+.|+++|+-||=
T Consensus 118 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np----~G~~~~~~~l~~l~~l~~~~g~~liv 176 (353)
T PLN02721 118 MDLDAIEAAIRPKGDDHFPTTRLICLENTHANC----GGRCLSVEYTDKVGELAKRHGLKLHI 176 (353)
T ss_pred cCHHHHHHHHHhccCCCCCcceEEEEecccccc----CCccccHHHHHHHHHHHHHcCCEEEE
Confidence 567777777754322111 33445555433111 23468999999999999999988853
No 138
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=74.15 E-value=11 Score=29.88 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
+..++.+.++++++.++..|...+.+ .| |.+....++.+++++++++|++-| .+.|-|.+
T Consensus 37 ~~~ls~eei~~~i~~~~~~gi~~I~~--------tG----GEPll~~~l~~iv~~l~~~g~~~v-~i~TNG~l 96 (302)
T TIGR02668 37 GNELSPEEIERIVRVASEFGVRKVKI--------TG----GEPLLRKDLIEIIRRIKDYGIKDV-SMTTNGIL 96 (302)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEEE--------EC----cccccccCHHHHHHHHHhCCCceE-EEEcCchH
Confidence 46789999999999999999887655 11 334555678899999999988433 56788864
No 139
>PRK12677 xylose isomerase; Provisional
Probab=73.86 E-value=13 Score=31.13 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee-ccCCcch
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP-LVPLYSD 89 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP-~i~~~GH 89 (131)
+.+.++.++.+|+.++.++.++.+||... ..-....+++|.+.++++||+|.= ..++++|
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~----~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~ 93 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGAT----DAERDRIIKRFKKALDETGLVVPMVTTNLFTH 93 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCC----hhhhHHHHHHHHHHHHHcCCeeEEEecCCCCC
Confidence 67899999999999999987777777431 011123588999999999999552 2345544
No 140
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=73.74 E-value=13 Score=34.12 Aligned_cols=115 Identities=11% Similarity=-0.029 Sum_probs=71.1
Q ss_pred CCCCCCCceeEEeecCCCCCCHHHHHHHHHH----HHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy2348 2 VTPSTFKEVLVHLDLKGAPPSLTYLKEILPI----LAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG 77 (131)
Q Consensus 2 ~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~----la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~ 77 (131)
++-|...+||+=+-+...++ +-++..++. ++..|++++.+ ++|+ -=|.+|++++++.++..+
T Consensus 590 E~NP~LG~RGir~~l~~~~~--~lf~~qlraI~ral~d~G~~~~~I----m~Pm--------V~s~eE~~~~~~~~~~~g 655 (782)
T TIGR01418 590 EENPMLGWRGASRYYSESYE--EAFRLECRAIKRVREEMGLTNVEV----MIPF--------VRTPEEGKRALEIMAEEG 655 (782)
T ss_pred CCCcccccchhhhhcccccH--HHHHHHHHHHHHHHHhcCCCCeEE----EecC--------CCCHHHHHHHHHHHHHhC
Confidence 45688999998877765333 334444443 33568887655 3454 237899999999998754
Q ss_pred -------CeEeeccCCcchHHHH---hccccccc-----c--------cccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 78 -------LASIPLVPLYSDMDFV---LKVKEFAK-----M--------RQNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 78 -------IevIP~i~~~GH~~~~---L~~p~~~~-----l--------~e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
+.|+.-|++|.=...+ ++.=.+-- | |+++.-.....+.+|+..+.++.+++..
T Consensus 656 ~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a 731 (782)
T TIGR01418 656 LRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAA 731 (782)
T ss_pred ccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHH
Confidence 5688888888654443 33311100 1 1111112346678899999999888753
No 141
>PLN02705 beta-amylase
Probab=73.67 E-value=19 Score=32.52 Aligned_cols=65 Identities=5% Similarity=-0.095 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
+.+-+.+.|+..+..|+..|+.++++.. |+|. -.+.+-|.-.=.+++.+.+++.|+.|.|-+-+=
T Consensus 262 ~~l~~~~al~a~L~aLK~aGVdGVmvDV-----WWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 328 (681)
T PLN02705 262 CQLVDPEGVRQELSHMKSLNVDGVVVDC-----WWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFH 328 (681)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEee-----eeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEee
Confidence 7789999999999999999999998864 4554 224568888899999999999999999977553
No 142
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=73.47 E-value=16 Score=28.83 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccccc
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFA 100 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~ 100 (131)
...|+..++ +--.|| ++|-|++.-..+.+.++=+|+
T Consensus 74 ~~~i~r~LD-~Ga~gI-ivP~v~taeea~~~v~a~kyp 109 (249)
T TIGR03239 74 PVIIKRLLD-IGFYNF-LIPFVESAEEAERAVAATRYP 109 (249)
T ss_pred HHHHHHHhc-CCCCEE-EecCcCCHHHHHHHHHHcCCC
Confidence 444555444 233444 789999999988887533333
No 143
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=73.03 E-value=9.6 Score=32.15 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe--e-ccCCcchHHH
Q psy2348 28 EILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI--P-LVPLYSDMDF 92 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI--P-~i~~~GH~~~ 92 (131)
+.++.|+..|+|.+.+-++..-+-.-..-++ ..|.+++.+.++.+++.|+.+| = -+..||.+..
T Consensus 142 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R-~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e 208 (430)
T PRK08208 142 EKLALLAARGVNRLSIGVQSFHDSELHALHR-PQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHA 208 (430)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHH
Confidence 3444444455555555554311100001123 4699999999999999998753 1 2355666533
No 144
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=72.86 E-value=5.8 Score=33.76 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=46.9
Q ss_pred eecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
||+-...-+++.++..++.|+..|+.++++.. +.|. -..++-|.-.-.+++.+.+++.|+.|+|-+
T Consensus 6 Ld~v~~~~~~~~~~~~L~~LK~~GV~GVmvdv-----WWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vm 73 (402)
T PF01373_consen 6 LDTVTDDNDWNALEAQLRALKSAGVDGVMVDV-----WWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVM 73 (402)
T ss_dssp TTSSCTTSECHHHHHHHHHHHHTTEEEEEEEE-----EHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEE
T ss_pred eeeecCCCcHHHHHHHHHHHHHcCCcEEEEEe-----EeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEE
Confidence 34333334566999999999999999998865 3333 113468888999999999999999999954
No 145
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=72.85 E-value=18 Score=29.73 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
+..+++++.+++..+..+|++. +++-||+ |.+|.+++++++...++.
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~--i~i~DT~---------G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQC--VYVVDSA---------GALLPEDVRDRVRALRAA 185 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCE--EEeCCCC---------CCCCHHHHHHHHHHHHHh
Confidence 3457777777777777777765 5555544 678888888888887764
No 146
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=72.82 E-value=14 Score=34.86 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
.+...+.+.+++-|.+|..+|+|.++... +|.. .++.+.|.+.||-|+-|+++-+|.
T Consensus 348 ~G~a~~~e~~~~dl~lmK~~g~NavR~sH---yP~~--------------~~fydlcDe~GllV~dE~~~e~~g 404 (1021)
T PRK10340 348 KGRAVGMDRVEKDIQLMKQHNINSVRTAH---YPND--------------PRFYELCDIYGLFVMAETDVESHG 404 (1021)
T ss_pred cCccCCHHHHHHHHHHHHHCCCCEEEecC---CCCC--------------HHHHHHHHHCCCEEEECCcccccC
Confidence 35567899999999999999999998742 3321 256789999999999999877775
No 147
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.76 E-value=5.3 Score=31.09 Aligned_cols=59 Identities=7% Similarity=-0.014 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCC--CCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNT--NPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~--~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
++.+++.|+..+.+|+..+.+. +++........ -....+.+++|.++|++.||.|.=|-
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLA---GYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC---CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 5578899999999999988763 11110000000 02235678999999999999887664
No 148
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=72.71 E-value=17 Score=29.35 Aligned_cols=68 Identities=6% Similarity=-0.039 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHH-cCCCEEEEEeeccCC-----------CCCCCCCCCCCCHH----HHHHHHHHHHHcCCeEeec
Q psy2348 20 PPSLTYLKEILPILAY-TGATSLLIEWEDTLP-----------YSLGFDNTNPFRET----EIFIILAAAESNGLASIPL 83 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~-~g~n~~~l~~ed~~p-----------~~~~~~~~~~YT~e----eikeiv~yA~~~~IevIP~ 83 (131)
+...+.+..++..+|+ .++ -+-+++.+... |.+-+-++..+.-| .-|+++++|..+|+.|=-|
T Consensus 56 ~~g~~~~~~~~~~~a~~~~V-PValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaE 134 (284)
T PRK12737 56 YAGTDYIVAIAEVAARKYNI-PLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAE 134 (284)
T ss_pred hCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3556666666666654 222 34455544321 11112234445544 4799999999999999887
Q ss_pred cCCcc
Q psy2348 84 VPLYS 88 (131)
Q Consensus 84 i~~~G 88 (131)
+=..|
T Consensus 135 lG~ig 139 (284)
T PRK12737 135 LGRLG 139 (284)
T ss_pred Eeecc
Confidence 75543
No 149
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=72.36 E-value=4.1 Score=34.01 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
-|+.+|.+|++.|.+.|+++||-+|
T Consensus 192 TGNVlTdeE~~kldalA~~~giPli 216 (417)
T COG3977 192 TGNVLTDEELAKLDALARQHGIPLI 216 (417)
T ss_pred CCCcccHHHHHHHHHHhhhcCCcEE
Confidence 3678999999999999999999886
No 150
>PF12696 TraG-D_C: TraM recognition site of TraD and TraG
Probab=72.28 E-value=6.3 Score=27.32 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
..+...+.++++-++.+||.++=-+|..+.++...--.....+..+-...-.+-..+++|.+.+.+++.+
T Consensus 12 ~~~~~~l~~~~~~~r~~gi~~~~~~Qs~~ql~~~yG~~~~~~i~~n~~~~~~~~~~d~~t~e~~s~~~G~ 81 (128)
T PF12696_consen 12 LGPIPGLEDLLATGRSYGISFILAFQSLAQLEAKYGKEGAESILGNCNNKIFFGSNDPETAEYISKLLGE 81 (128)
T ss_pred cCCcHhHHHHHHHHhcCCCEEEEEEccHHHHHHHHCHHHHHHHHHhcCceEeccCCCHHHHHHHHHHhCC
Confidence 3355789999999999999999999999999885421111122221111123445578899999988765
No 151
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=72.12 E-value=40 Score=27.16 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAE 74 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~ 74 (131)
-...+.++++++.|...|++++.+ -|.......+|.+|-+++++.|.
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~Gi~v--------~GstGE~~~Lt~eEr~~v~~~~~ 71 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILT--------MGTFGECATLTWEEKQAFVATVV 71 (309)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE--------CcccccchhCCHHHHHHHHHHHH
Confidence 467888999999999999999765 11111222566666666665544
No 152
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=72.01 E-value=30 Score=26.27 Aligned_cols=70 Identities=14% Similarity=-0.063 Sum_probs=45.4
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-----------------------------------
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG----------------------------------- 54 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~----------------------------------- 54 (131)
-.+|+|.- .-.+.+...++++.|+.+++ ..+|+.+|-...
T Consensus 95 ~~l~lDaN-~~~~~~~a~~~~~~l~~~~i----~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~ 169 (229)
T cd00308 95 ARLAVDAN-GAWTPKEAIRLIRALEKYGL----AWIEEPCAPDDLEGYAALRRRTGIPIAADESVTTVDDALEALELGAV 169 (229)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHhhhcCC----CeEECCCCccCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCC
Confidence 35899984 44688999999999998664 233443321100
Q ss_pred ----CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 55 ----FDNTNPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 55 ----~~~~~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
+.-...-...+.+++.++|+++||.++|--
T Consensus 170 d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~ 203 (229)
T cd00308 170 DILQIKPTRVGGLTESRRAADLAEAFGIRVMVHG 203 (229)
T ss_pred CEEecCccccCCHHHHHHHHHHHHHcCCEEeecC
Confidence 000112346788889999999999999864
No 153
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=71.93 E-value=48 Score=28.57 Aligned_cols=65 Identities=5% Similarity=-0.006 Sum_probs=41.5
Q ss_pred eeEEeec--C-CCCCCHHHHHHHHHHHHHc--CCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 10 VLVHLDL--K-GAPPSLTYLKEILPILAYT--GATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 10 Rg~mlD~--~-~~~~~~~~lk~~i~~la~~--g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.+.+++ . +.-++++.+.+.+...... +...+.+ +.| . -+-|.-||.+++++|++.|++++|-||
T Consensus 167 ~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l----~nP--~-NPTG~~~s~e~l~~L~~~a~~~~i~lI 236 (496)
T PLN02376 167 EIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLIL----TNP--S-NPLGTMLDKDTLTNLVRFVTRKNIHLV 236 (496)
T ss_pred EEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEE----cCC--C-CCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 4455555 2 3456778777665544433 3333333 122 1 234579999999999999999999766
No 154
>PLN02231 alanine transaminase
Probab=71.89 E-value=38 Score=29.53 Aligned_cols=66 Identities=20% Similarity=0.064 Sum_probs=42.0
Q ss_pred eEEeecC-CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 11 LVHLDLK-GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 11 g~mlD~~-~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.+-+|-. +--++++.|++.+......+.+.-.+.+- .| + -+.|..||.+++++|++.|+++++-||
T Consensus 242 ~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~--nP--~-NPTG~vls~e~l~~Iv~~a~~~~l~lI 308 (534)
T PLN02231 242 PYYLDEATGWGLEISELKKQLEDARSKGITVRALVVI--NP--G-NPTGQVLAEENQRDIVEFCKQEGLVLL 308 (534)
T ss_pred EEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEe--CC--C-CCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 3344443 33578888888776544333332222221 12 2 334679999999999999999999777
No 155
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.68 E-value=28 Score=26.58 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=36.7
Q ss_pred ecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q psy2348 15 DLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGL 78 (131)
Q Consensus 15 D~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~I 78 (131)
|..+-..+.+++.+++..+..+|++.+. +-|| .|..|.+++++++...+++.=
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~g~~~i~--l~Dt---------~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 137 DAFGCKTDPEYVLEVAKALEEAGADEIS--LKDT---------VGLATPEEVAELVKALREALP 189 (265)
T ss_pred eecCCCCCHHHHHHHHHHHHHcCCCEEE--echh---------cCCcCHHHHHHHHHHHHHhCC
Confidence 4544456788888888888888877644 4443 256788888888888776543
No 156
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=71.65 E-value=6.6 Score=31.36 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC---cchHHHHhc
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPL---YSDMDFVLK 95 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~---~GH~~~~L~ 95 (131)
+++++..+++.|++++++ + =+.-||-.++.+.|+++||.+||.|.- ..-+..+.+
T Consensus 104 ~e~F~~~~~~aGvdGlIi------------p---DLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~ 161 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLII------------P---DLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAK 161 (259)
T ss_dssp HHHHHHHHHHHTEEEEEE------------T---TSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEE------------c---CCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH
Confidence 345555555556655554 1 122367788899999999999999975 444444443
No 157
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=71.56 E-value=20 Score=27.56 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCC--CCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNT--NPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~--~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
.+.+++.|+....+|+..+.+.+-.. | .+ .... -....+.++++.++|+++||.+.=|
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~-~-~~-~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE 143 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKT-P-AG-FSSEQIHATLVENLRYAANMLMKEDILLLIE 143 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCC-C-CC-CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 56789999999999999876633110 0 00 0000 0233456688999999999988765
No 158
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=71.42 E-value=9.1 Score=30.07 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCCEEEEEeeccCC--CCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 28 EILPILAYTGATSLLIEWEDTLP--YSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p--~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
+.++.|.+.|++.+.+.+| +-| |+. ++ + ..|-++..+.++.|++.||.|.+-
T Consensus 124 e~l~~Lk~aG~~~v~i~~E-~~~~~~~~-i~-~-~~s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 124 EQAKRLKDAGLDYYNHNLD-TSQEFYSN-II-S-THTYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHcCCCEEEEccc-CCHHHHhh-cc-C-CCCHHHHHHHHHHHHHcCCEEEEe
Confidence 3444566677777777776 322 111 33 2 369999999999999999997544
No 159
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=71.36 E-value=15 Score=30.27 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=61.0
Q ss_pred ecC-CCCCCHHHHHHHHHHHHHcCCCEEEEEee--ccC--------CCC------CC----CCCCCCCCHHHHHHHHHHH
Q psy2348 15 DLK-GAPPSLTYLKEILPILAYTGATSLLIEWE--DTL--------PYS------LG----FDNTNPFRETEIFIILAAA 73 (131)
Q Consensus 15 D~~-~~~~~~~~lk~~i~~la~~g~n~~~l~~e--d~~--------p~~------~~----~~~~~~YT~eeikeiv~yA 73 (131)
.++ +|-=+++.-|++|+..++-|+..+-+..- +++ +|. |. +...-.++.++.++|.+||
T Consensus 6 Eig~NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~ 85 (329)
T TIGR03569 6 EAGVNHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYC 85 (329)
T ss_pred EeCCCccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHH
Confidence 443 77789999999999999999987765441 111 121 11 0112358899999999999
Q ss_pred HHcCCeEeeccCCcchHHHHhcc
Q psy2348 74 ESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 74 ~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
++.||.++=+.=-.-+.+.+..+
T Consensus 86 ~~~Gi~~~stpfd~~svd~l~~~ 108 (329)
T TIGR03569 86 ESKGIEFLSTPFDLESADFLEDL 108 (329)
T ss_pred HHhCCcEEEEeCCHHHHHHHHhc
Confidence 99999999998888888888654
No 160
>PRK08636 aspartate aminotransferase; Provisional
Probab=71.34 E-value=5.4 Score=32.78 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=23.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|..||.+++++|++.|+++++-||
T Consensus 187 PTG~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 187 PTTATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred CCCccCCHHHHHHHHHHHHHcCcEEE
Confidence 35679999999999999999999887
No 161
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=71.13 E-value=11 Score=32.58 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348 24 TYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV---PLYSDMD 91 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i---~~~GH~~ 91 (131)
...++=|++|+++|+|..++ .|..-+|- |.-...+.-..+=.+++++.+.++||++|-.+ ++|+.+.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~-g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQ-GDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeC-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHH
Confidence 44588899999999998775 66666663 21000122334456789999999999997665 5666543
No 162
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.12 E-value=6.6 Score=30.40 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCC--CCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNT--NPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~--~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
++.+++.|+..+.+|++.+.+.--+ .+.. .... -.-..+.++++..+|++.||++.=|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~--~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYD--VYYE-EKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcc--cccc-cccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5778999999999999998762100 0000 0000 01223568999999999999887543
No 163
>PRK05942 aspartate aminotransferase; Provisional
Probab=70.91 E-value=5.6 Score=32.57 Aligned_cols=25 Identities=16% Similarity=0.004 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 183 tG~~~s~~~~~~i~~~a~~~~~~iI 207 (394)
T PRK05942 183 TTATAPREFFEEIVAFARKYEIMLV 207 (394)
T ss_pred CCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 4678999999999999999999887
No 164
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=70.13 E-value=55 Score=26.23 Aligned_cols=109 Identities=11% Similarity=0.079 Sum_probs=64.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEEEeeccC-CCCCCC-CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc---chH
Q psy2348 18 GAPPSLTYLKEILPILAYTGAT--SLLIEWEDTL-PYSLGF-DNTNPFRETEIFIILAAAESNGLASIPLVPLY---SDM 90 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n--~~~l~~ed~~-p~~~~~-~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~---GH~ 90 (131)
....+-+.|.++++.+.+.|+. .+.+- +.+ .-.|.+ -+...+- +.+++++.-+++|+.++.-|+=. .+.
T Consensus 24 ~~~~s~~~v~~~~~~~~~~~iP~d~i~iD--~~w~~~~g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~P~i~~~s~ 99 (303)
T cd06592 24 KADINQETVLNYAQEIIDNGFPNGQIEID--DNWETCYGDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVHPFINTDSE 99 (303)
T ss_pred ccCcCHHHHHHHHHHHHHcCCCCCeEEeC--CCccccCCccccChhhCC--CHHHHHHHHHHCCCeEEEEECCeeCCCCH
Confidence 3457888999999999999974 55542 211 111221 1222343 58999999999999998765521 110
Q ss_pred HHH-hccccccc---------ccc-cCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 91 DFV-LKVKEFAK---------MRQ-NFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 91 ~~~-L~~p~~~~---------l~e-~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
.+- ++...|-- +.. ++.....++.+||++.+...+.++++
T Consensus 100 ~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 150 (303)
T cd06592 100 NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSL 150 (303)
T ss_pred HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHH
Confidence 000 11111100 000 11223578999999999999988764
No 165
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=69.97 E-value=10 Score=30.70 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCC-EEEEEeeccCCCCC-CCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 28 EILPILAYTGAT-SLLIEWEDTLPYSL-GFDNTNPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 28 ~~i~~la~~g~n-~~~l~~ed~~p~~~-~~~~~~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
+.++.|+..|.| .+.+-+|..-+--- ..-++| .|.+++.+.++.|+++||.|.-.
T Consensus 118 e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t~~~~~~ai~~~~~~Gi~v~~~ 174 (313)
T TIGR01210 118 EKLEELRKIGVNVEVAVGLETANDRIREKSINKG-STFEDFIRAAELARKYGAGVKAY 174 (313)
T ss_pred HHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CCHHHHHHHHHHHHHcCCcEEEE
Confidence 444455556666 46666653211000 011344 49999999999999999997644
No 166
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=69.68 E-value=22 Score=28.83 Aligned_cols=25 Identities=4% Similarity=-0.087 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 64 TEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 64 eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
+.-|++++||..+|+.|=-|+=..|
T Consensus 115 ~~T~evv~~Ah~~gv~VEaElG~ig 139 (286)
T PRK12738 115 KLVKSVVDFCHSQDCSVEAELGRLG 139 (286)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEeeC
Confidence 3479999999999999987764443
No 167
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=69.63 E-value=6.2 Score=33.40 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.|...|+||++.|.+.|+++|+.||-
T Consensus 171 ~Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 171 TGRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred CCccccHHHHHHHHHHHHHcCCEEEe
Confidence 35689999999999999999999995
No 168
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=69.40 E-value=22 Score=28.45 Aligned_cols=56 Identities=25% Similarity=0.276 Sum_probs=34.2
Q ss_pred HHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCe------------------------Eeecc
Q psy2348 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLA------------------------SIPLV 84 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Ie------------------------vIP~i 84 (131)
....++..|+.-+++..|+ +.++.+++..++..|+..|+. |+|-|
T Consensus 31 ~~E~~a~~GfD~v~iD~EH-----------g~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V 99 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEH-----------APNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMV 99 (267)
T ss_pred HHHHHHHcCCCEEEEcccc-----------CCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCc
Confidence 4445666677777776665 355555555555555555543 56777
Q ss_pred CCcchHHHHhc
Q psy2348 85 PLYSDMDFVLK 95 (131)
Q Consensus 85 ~~~GH~~~~L~ 95 (131)
+|.-..+.+.+
T Consensus 100 ~saeeA~~~V~ 110 (267)
T PRK10128 100 DTAEQARQVVS 110 (267)
T ss_pred CCHHHHHHHHH
Confidence 77777776664
No 169
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=69.38 E-value=32 Score=31.36 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCEEEEE-eecc--------CCC-CCC--CC----CCCCCCHHHHHHHHHHHHHcCCeEe----eccCCc
Q psy2348 28 EILPILAYTGATSLLIE-WEDT--------LPY-SLG--FD----NTNPFRETEIFIILAAAESNGLASI----PLVPLY 87 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~-~ed~--------~p~-~~~--~~----~~~~YT~eeikeiv~yA~~~~IevI----P~i~~~ 87 (131)
.+-+.|+.+|++++++- +-.+ -|. ++. +. +..+=|.+|.+++++-|.++||.|| |.=-.-
T Consensus 78 ~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ 157 (688)
T TIGR02455 78 ALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGK 157 (688)
T ss_pred HHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCC
Confidence 56778999999998762 1001 021 111 11 2335699999999999999999876 555666
Q ss_pred chHHHHhc
Q psy2348 88 SDMDFVLK 95 (131)
Q Consensus 88 GH~~~~L~ 95 (131)
||= +.++
T Consensus 158 ghd-F~lA 164 (688)
T TIGR02455 158 GAD-FRLA 164 (688)
T ss_pred Ccc-hHHH
Confidence 776 6664
No 170
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=69.27 E-value=16 Score=29.03 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348 28 EILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLAS 80 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~Iev 80 (131)
.+.+..+..|+.++++ ||+--+|. +- .+++.++++++++-|+++|+..
T Consensus 135 ~l~~~a~~aG~~gvMl---DTa~Kdg~~L~--d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 135 DLPEIAAEAGFDGVML---DTADKDGGSLF--DHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHHHcCCCEEEE---ecccCCCCchh--hcCCHHHHHHHHHHHHHccchh
Confidence 4677788889999888 44422332 22 5899999999999999999864
No 171
>PLN02368 alanine transaminase
Probab=69.15 E-value=6.5 Score=32.95 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
-++++.|.+.+.....-+.++-.+-+- .| . -+.|..||++++++|++.|+++++-||
T Consensus 191 ~~d~~~le~~i~~~~~~~~~~k~l~l~--nP--~-NPTG~v~s~e~l~~l~~~a~~~~~~II 247 (407)
T PLN02368 191 GLDVNNLRQSVAQARSKGITVRAMVII--NP--G-NPTGQCLSEANLREILKFCYQERLVLL 247 (407)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEE--CC--C-CCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 466777777665332221111111121 12 2 345678999999999999999999887
No 172
>KOG0462|consensus
Probab=69.13 E-value=3.2 Score=36.98 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHcCCeE----------------eeccCCcchHHHH
Q psy2348 61 FRETEIFIILAAAESNGLAS----------------IPLVPLYSDMDFV 93 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~Iev----------------IP~i~~~GH~~~~ 93 (131)
--|+++-+=++-=++||||| .=.||||||..+-
T Consensus 91 ~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 91 IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 45788888888889999987 4579999998764
No 173
>PLN02905 beta-amylase
Probab=69.07 E-value=28 Score=31.59 Aligned_cols=64 Identities=8% Similarity=-0.031 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
+.+-+.+.|+..+..|+..|+.++++.. |+|. -.+++-|.-.=.+++.+.+++.|+.|.|-+-+
T Consensus 280 ~~l~~~~al~a~L~aLK~aGVdGVmvDV-----WWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSF 345 (702)
T PLN02905 280 CELADPDGLLKQLRILKSINVDGVKVDC-----WWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSF 345 (702)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEee-----eeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEe
Confidence 6788999999999999999999998854 4554 22456888888999999999999999997654
No 174
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=68.96 E-value=6.3 Score=32.37 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 186 TG~~~s~~~~~~l~~~a~~~~~~iI 210 (402)
T TIGR03542 186 TGTVLTKEQLKELVDYANEHGSLIL 210 (402)
T ss_pred CCccCCHHHHHHHHHHHHHcCeEEE
Confidence 4668999999999999999998776
No 175
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=68.77 E-value=27 Score=28.12 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 64 TEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 64 eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
+.-|+++++|..+|+.|=-|+=..|
T Consensus 110 ~~t~~vv~~ah~~gv~VEaElG~i~ 134 (276)
T cd00947 110 AKTKEVVELAHAYGVSVEAELGRIG 134 (276)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeec
Confidence 3479999999999999987775543
No 176
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=68.74 E-value=19 Score=28.13 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
.+++++.++++.+...|+.. +++.||+ |..|.+++.++++..++.
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~--i~l~DT~---------G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 138 ASPEELAEQAKLMESYGADC--VYVTDSA---------GAMLPDDVRERVRALREA 182 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEEcCCC---------CCcCHHHHHHHHHHHHHh
Confidence 46778888888888888775 4566654 678888888888887764
No 177
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=68.70 E-value=37 Score=26.81 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES 75 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~ 75 (131)
+.+++.+++..+...|+.. +.+.||. |..|.+++++++...++
T Consensus 136 ~~~~~~~~~~~~~~~g~~~--i~l~DT~---------G~~~P~~v~~lv~~l~~ 178 (266)
T cd07944 136 SDEELLELLELVNEIKPDV--FYIVDSF---------GSMYPEDIKRIISLLRS 178 (266)
T ss_pred CHHHHHHHHHHHHhCCCCE--EEEecCC---------CCCCHHHHHHHHHHHHH
Confidence 4455555555555555443 3333332 45666666666666554
No 178
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=68.13 E-value=21 Score=29.32 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
+.-+++++.+++..+..+|++. +++-||+ |..|.+|+++++...++.
T Consensus 138 ~~~~~e~l~~~a~~~~~~Ga~~--i~i~DT~---------G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 138 HMTPPEKLAEQAKLMESYGADC--VYIVDSA---------GAMLPDDVRDRVRALKAV 184 (333)
T ss_pred cCCCHHHHHHHHHHHHhcCCCE--EEEccCC---------CCCCHHHHHHHHHHHHHh
Confidence 4457788888888888888875 5666654 788999999999988864
No 179
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=68.07 E-value=14 Score=31.95 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHH---HHHHHHHHHHcCCeEeecc---CCcchHHH
Q psy2348 24 TYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETE---IFIILAAAESNGLASIPLV---PLYSDMDF 92 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~ee---ikeiv~yA~~~~IevIP~i---~~~GH~~~ 92 (131)
...|+=|++|+++|+|..+ |.|..-+|- | .++...++- .+++++.+.++||+.|-.+ ++|..+..
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~-G---~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~ 141 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPK-G---DEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQ 141 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccC-C---CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHH
Confidence 4678999999999999876 467777773 2 122345554 4689999999999988876 67776643
No 180
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.39 E-value=37 Score=26.12 Aligned_cols=75 Identities=8% Similarity=0.036 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccC----------CCCC--C--CCCCCCCCHHHHH-----------------HHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTL----------PYSL--G--FDNTNPFRETEIF-----------------IIL 70 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~----------p~~~--~--~~~~~~YT~eeik-----------------eiv 70 (131)
+.+...++.+.|..-|+..+.+-|.... .|.+ + +.-|.-+|.+|++ +++
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~ 102 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRETA 102 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 6788888999999999998777664211 1321 2 3445678888887 788
Q ss_pred HHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 71 AAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 71 ~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
++|++++|-+||-.-||.-...++.+
T Consensus 103 ~~~~~~~i~~iPG~~T~~E~~~A~~~ 128 (213)
T PRK06552 103 KICNLYQIPYLPGCMTVTEIVTALEA 128 (213)
T ss_pred HHHHHcCCCEECCcCCHHHHHHHHHc
Confidence 99999999999999999888888753
No 181
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=67.33 E-value=5.5 Score=24.51 Aligned_cols=23 Identities=35% Similarity=0.383 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCCEE-EEEeecc
Q psy2348 26 LKEILPILAYTGATSL-LIEWEDT 48 (131)
Q Consensus 26 lk~~i~~la~~g~n~~-~l~~ed~ 48 (131)
.++++..|...|+++. .+|+||.
T Consensus 2 w~~i~~~L~~~GYdG~~siE~ED~ 25 (55)
T PF07582_consen 2 WKRIFSALREIGYDGWLSIEHEDA 25 (55)
T ss_dssp HHHHHHHHHHTT--SEEEE---ST
T ss_pred HHHHHHHHHHcCCCceEEEEeecC
Confidence 4789999999999875 6899984
No 182
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=67.17 E-value=7.2 Score=31.74 Aligned_cols=25 Identities=12% Similarity=-0.033 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 178 TG~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 178 TTAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred CCccCCHHHHHHHHHHHHHcCeEEE
Confidence 4678999999999999999998777
No 183
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.73 E-value=18 Score=28.58 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=60.8
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec-cC-CCCCCCCCCCCCCHHHHHHH-HHHHHHcCCeEeeccCCcc
Q psy2348 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWED-TL-PYSLGFDNTNPFRETEIFII-LAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 12 ~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed-~~-p~~~~~~~~~~YT~eeikei-v~yA~~~~IevIP~i~~~G 88 (131)
..+.+.-..++-+-+...|...+++|++.++.-+-+ +. .+++ .+-. -.+.++.| ++.|++-|-.+||+|..+=
T Consensus 78 ~~i~l~~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~---~~~~-kler~~ki~ieAaEQs~R~~vP~I~~~~ 153 (246)
T COG1385 78 LKITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDG---KKAA-KLERWQKIAIEAAEQSGRNVVPEIKPPE 153 (246)
T ss_pred ceEEEEEEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEeccc---cchh-HHHHHHHHHHHHHHhcCCCcCCeeechh
Confidence 345556677888889999999999999998875532 21 1111 1112 45666665 4677889999999999999
Q ss_pred hHHHHhc-ccccc
Q psy2348 89 DMDFVLK-VKEFA 100 (131)
Q Consensus 89 H~~~~L~-~p~~~ 100 (131)
....+++ ++.+.
T Consensus 154 ~~~~~l~~~~~~~ 166 (246)
T COG1385 154 SLKELLKEIDDED 166 (246)
T ss_pred hHHHHHHhcccch
Confidence 9999997 44333
No 184
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=66.63 E-value=6.1 Score=33.08 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 60 PFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
+=|.+|+.+++++|.+++|.|+|-
T Consensus 4 P~s~eev~~iv~~a~~~~i~v~~~ 27 (413)
T TIGR00387 4 PKNTEQVARILKLCHEHRIPIVPR 27 (413)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 348999999999999999999994
No 185
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=66.48 E-value=7.5 Score=31.76 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|..||.+++++|++.|+++++-||
T Consensus 178 PTG~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 178 PTGAVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred CcCccCCHHHHHHHHHHHHHcCeEEE
Confidence 34679999999999999999999887
No 186
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=66.44 E-value=27 Score=28.21 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=37.7
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
.+|||= -.+.+.+++-|+. |++++++--. ..||+. ..+.-|+++++|..+|+.|=-|+-..|
T Consensus 77 alHLDH---~~~~e~i~~ai~~----GftSVM~DgS-~l~~ee--------Ni~~T~~vv~~ah~~gv~VEaElG~i~ 138 (287)
T PF01116_consen 77 ALHLDH---GKDFEDIKRAIDA----GFTSVMIDGS-ALPFEE--------NIAITREVVEYAHAYGVSVEAELGHIG 138 (287)
T ss_dssp EEEEEE---E-SHHHHHHHHHH----TSSEEEEE-T-TS-HHH--------HHHHHHHHHHHHHHTT-EEEEEESBSS
T ss_pred Eeeccc---CCCHHHHHHHHHh----CcccccccCC-cCCHHH--------HHHHHHHHHHhhhhhCCEEEEEeeeee
Confidence 566764 3346666666655 8888776221 112221 233478999999999999988876555
No 187
>PRK06348 aspartate aminotransferase; Provisional
Probab=66.42 E-value=7.8 Score=31.58 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+..+.++.|++.+.. +...+.+ . .|- -+.|..+|.+++++|++.|+++++-||
T Consensus 147 ~~~~d~~~l~~~~~~----~~~~v~l--~--~p~---NPtG~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 147 GFQINVKKLEALITS----KTKAIIL--N--SPN---NPTGAVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred CCcCCHHHHHHhhCc----CccEEEE--e--CCC---CCCCcCCCHHHHHHHHHHHHHCCeEEE
Confidence 334667777665531 3333333 2 121 234578999999999999999998876
No 188
>PRK08068 transaminase; Reviewed
Probab=66.34 E-value=7.8 Score=31.60 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|..||.+++++|++.|+++++-||
T Consensus 179 PTG~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 179 PTGAVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 34679999999999999999999777
No 189
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=66.21 E-value=7.1 Score=31.89 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
-++++.+.+.+.. +...+. +. .| . -+.|..||++++++|++.|+++++-||
T Consensus 152 ~~d~~~l~~~~~~----~~k~i~--l~--~p--~-NPtG~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 152 LPDFDAVPESVWR----RCQLLF--VC--SP--G-NPTGAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred CCCHHHHHHHHhh----cceEEE--Ee--CC--C-CCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence 3566766665432 333333 32 12 1 334679999999999999999998776
No 190
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.21 E-value=24 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
.+++++.+++..+...|++. +++-||. |..+.+++++++...++.
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~--i~l~DT~---------G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADR--LRFADTV---------GILDPFTTYELIRRLRAA 180 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCE--EEeCCCC---------CCCCHHHHHHHHHHHHHh
Confidence 45777777777777777765 4555543 577788888888877764
No 191
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=66.10 E-value=16 Score=34.25 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 64 TEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 64 eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
+|.|++|+-|.++||.||=.+ .+-|+.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~ 430 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTN 430 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-eccccc
Confidence 699999999999999998554 344544
No 192
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.00 E-value=38 Score=26.99 Aligned_cols=68 Identities=21% Similarity=0.088 Sum_probs=43.8
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-----------CC---CCCC----------------
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-----------FD---NTNP---------------- 60 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-----------~~---~~~~---------------- 60 (131)
.+|+|+. .-.+.+...++.+.|+.+++ ..+|+.++-... ++ +...
T Consensus 179 ~l~vD~n-~~~~~~~A~~~~~~l~~~~l----~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d 253 (316)
T cd03319 179 RLRVDAN-QGWTPEEAVELLRELAELGV----ELIEQPVPAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYD 253 (316)
T ss_pred eEEEeCC-CCcCHHHHHHHHHHHHhcCC----CEEECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCC
Confidence 4899984 45667888899999998865 233543321100 00 1111
Q ss_pred ---------CCHHHHHHHHHHHHHcCCeEeec
Q psy2348 61 ---------FRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 61 ---------YT~eeikeiv~yA~~~~IevIP~ 83 (131)
=...+.+++.++|+++||.++|-
T Consensus 254 ~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 254 GINIKLMKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 24667778888999999999986
No 193
>PLN02849 beta-glucosidase
Probab=65.84 E-value=21 Score=31.09 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHHH
Q psy2348 22 SLTYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMDF 92 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~~ 92 (131)
.-...|+=|.+|+++|+|..+ |.|..-+|- | .|...++-| +++++.+.++|||.+-.+ ++|-+++.
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~-G----~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~ 150 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPN-G----RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLED 150 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcC-C----CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHH
Confidence 345678899999999999876 466677774 2 134566665 789999999999988654 56655543
No 194
>PRK09082 methionine aminotransferase; Validated
Probab=65.78 E-value=7.7 Score=31.63 Aligned_cols=25 Identities=0% Similarity=0.096 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~i~li 200 (386)
T PRK09082 176 SGTVWSAADMRALWQLIAGTDIYVL 200 (386)
T ss_pred CCcCCCHHHHHHHHHHHHHCCEEEE
Confidence 4568999999999999999999877
No 195
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=65.76 E-value=15 Score=30.08 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG 77 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~ 77 (131)
++|++.|..+|++... +..|. +-..||++|+..|.+.|++.+
T Consensus 240 ~~F~~~L~~~G~~~~~-----~~~f~----DHh~yt~~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 240 ERFFDTLESLGIEVVG-----TLAFP----DHHRYTEQDLEKLEAEAKAAG 281 (326)
T ss_pred HHHHHHHHHcCCeEEE-----eeECC----CCCCCCHHHHHHHHHhhcccc
Confidence 5677888888876541 22233 235899999999999999998
No 196
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=65.65 E-value=7.6 Score=31.97 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 189 TG~~~s~~~~~~l~~~a~~~~~~iI 213 (409)
T PRK07590 189 TGTVLTKEQLKAWVDYAKENGSLIL 213 (409)
T ss_pred cCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 3568999999999999999998777
No 197
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=65.41 E-value=16 Score=27.38 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
|.--..+..|+-.+.|.++|+ ||.-.+.+ -+=|.|.+.+...-|+++|++||=
T Consensus 10 GS~SD~~~mk~Aa~~L~~fgi-----------~ye~~VvS-AHRTPe~m~~ya~~a~~~g~~viI 62 (162)
T COG0041 10 GSKSDWDTMKKAAEILEEFGV-----------PYEVRVVS-AHRTPEKMFEYAEEAEERGVKVII 62 (162)
T ss_pred cCcchHHHHHHHHHHHHHcCC-----------CeEEEEEe-ccCCHHHHHHHHHHHHHCCCeEEE
Confidence 334467788999999999987 34333333 367999999999999999998874
No 198
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=65.38 E-value=31 Score=31.78 Aligned_cols=115 Identities=12% Similarity=0.001 Sum_probs=68.7
Q ss_pred CCCCCCCceeEEeecCCCCCCHHHHHHHHHH----HHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy2348 2 VTPSTFKEVLVHLDLKGAPPSLTYLKEILPI----LAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG 77 (131)
Q Consensus 2 ~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~----la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~ 77 (131)
++-|...+||+=+-++..+ .+-++..++. +...|+.++.+ ++|+ -=|.+|++++++.++.+|
T Consensus 597 E~NP~LG~RGiR~~l~~p~--~~lf~~qlraI~rald~~G~~~~~I----mvPm--------V~s~eEa~~~~~~~~~~g 662 (795)
T PRK06464 597 EENPMLGFRGASRYLSESF--REAFALECEAIKRVREEMGLTNVEV----MIPF--------VRTVEEAEKVIELLAENG 662 (795)
T ss_pred CCCCccccchhhhcccCch--HHHHHHHHHHHHHHHHhcCCCCeEE----EecC--------CCCHHHHHHHHHHHHHhC
Confidence 4568899999877765431 1233333332 33368877655 3454 337899999999998764
Q ss_pred -------CeEeeccCCcchHHHH---hccccccc-----c--------cccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 78 -------LASIPLVPLYSDMDFV---LKVKEFAK-----M--------RQNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 78 -------IevIP~i~~~GH~~~~---L~~p~~~~-----l--------~e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
+.|+.-|++|.=...+ ++.=.+-- | |+++.-.....+.+|+..+.++.+++..
T Consensus 663 ~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa 738 (795)
T PRK06464 663 LKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAA 738 (795)
T ss_pred ccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHH
Confidence 4578888888654433 33311100 1 1111112346678899999999888753
No 199
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=65.31 E-value=35 Score=27.61 Aligned_cols=25 Identities=0% Similarity=-0.118 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 64 TEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 64 eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
+.-|+++++|..+|+.|=-|+=..|
T Consensus 115 ~~T~~vv~~Ah~~gv~VEaElG~vg 139 (284)
T PRK09195 115 SLVKEVVDFCHRFDVSVEAELGRLG 139 (284)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeccc
Confidence 3468999999999999987764443
No 200
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=65.26 E-value=36 Score=27.71 Aligned_cols=109 Identities=9% Similarity=-0.056 Sum_probs=66.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC--EEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 17 KGAPPSLTYLKEILPILAYTGAT--SLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~n--~~~l~~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
+....+-+.+.++++.+.+.++. ++.+.+..+.-+..- + +...|. +.+.+++.-++.|+.|++-++-.=..+.
T Consensus 17 r~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~-d~~~FP--dp~~mi~~L~~~G~k~~~~~~P~v~~~~- 92 (339)
T cd06603 17 RWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTW-DKKKFP--DPEKMQEKLASKGRKLVTIVDPHIKRDD- 92 (339)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEe-CcccCC--CHHHHHHHHHHCCCEEEEEecCceecCC-
Confidence 45667889999999999999984 444443211111100 2 223343 6789999999999999998863311110
Q ss_pred hccccccccc-----------------ccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 94 LKVKEFAKMR-----------------QNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 94 L~~p~~~~l~-----------------e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
.++.|.++. -++.....+..+||++.+...+.++++
T Consensus 93 -~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 93 -GYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred -CCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 011122211 112223578899999999988887764
No 201
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=65.21 E-value=7.1 Score=32.38 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 60 PFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
+-|.+|+.+++.+|.+++|-|+|-
T Consensus 38 p~s~~eV~~iv~~a~~~~~~v~pr 61 (459)
T COG0277 38 PKSEEEVAAILRLANENGIPVVPR 61 (459)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEE
Confidence 678999999999999999999985
No 202
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=65.13 E-value=8.2 Score=32.86 Aligned_cols=52 Identities=10% Similarity=0.181 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 21 PSLTYLKEILPILAYTG---ATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g---~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
++++.|++.|. ..+ .-.+.+..- ....+|..+|.+++++|.+.|+++||-||
T Consensus 136 iD~e~Le~~I~---~~~~~~~~~I~v~~p------~N~~gG~~~s~~~l~~i~eia~~~gi~li 190 (431)
T cd00617 136 IDVAKLEKLID---EVGAENIPYIVLTIT------NNTAGGQPVSMANLREVRELAHKYGIPVV 190 (431)
T ss_pred cCHHHHHHHhC---cccCCCccEEEEECC------cCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 56777777765 222 122334322 11123578999999999999999999886
No 203
>PRK05957 aspartate aminotransferase; Provisional
Probab=64.92 E-value=8.9 Score=31.37 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++|+-||
T Consensus 173 tG~~~~~~~~~~i~~~a~~~~~~li 197 (389)
T PRK05957 173 TGVVYPEALLRAVNQICAEHGIYHI 197 (389)
T ss_pred CCcCcCHHHHHHHHHHHHHcCcEEE
Confidence 4568999999999999999999887
No 204
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=64.80 E-value=9.6 Score=32.84 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
..++++++++++++|.+.|++++=|+.+.-.++.+++.
T Consensus 141 ~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~ 178 (454)
T PRK09427 141 SVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL 178 (454)
T ss_pred HhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhC
Confidence 47899999999999999999999999999999999875
No 205
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=64.66 E-value=16 Score=33.18 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
..++.+++++++++|++.|++++=||-+.-.++.+++.
T Consensus 142 ~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ 179 (695)
T PRK13802 142 AALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAA 179 (695)
T ss_pred hhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhC
Confidence 47899999999999999999999999999999999874
No 206
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=64.58 E-value=29 Score=28.84 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeEeeccCCcchH
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN-GLASIPLVPLYSDM 90 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~-~IevIP~i~~~GH~ 90 (131)
...++.+.++++++.++..|+..+.+ .| |.+.-..++.+|++++++. |+..| .+.|-|.+
T Consensus 87 ~~~ls~eei~~~i~~~~~~Gv~~I~~--------tG----GEPllr~dl~eli~~l~~~~gi~~i-~itTNG~l 147 (373)
T PLN02951 87 SHLLSQDEIVRLAGLFVAAGVDKIRL--------TG----GEPTLRKDIEDICLQLSSLKGLKTL-AMTTNGIT 147 (373)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEE--------EC----CCCcchhhHHHHHHHHHhcCCCceE-EEeeCcch
Confidence 45789999999999999999887654 12 3455566899999999997 77532 55788865
No 207
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=64.53 E-value=30 Score=30.09 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeec
Q psy2348 24 TYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPL 83 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~ 83 (131)
...|+=|++|+++|+|.++ +.|..-||-.+ ++-..++-+ ++|++-|.++|||.+=.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~----~~e~N~~gl~fY~~l~del~~~gIep~vT 119 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGD----GGEVNEKGLRFYDRLFDELKARGIEPFVT 119 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCC----CCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4568889999999999886 57778787433 123444443 68999999999997754
No 208
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=64.45 E-value=23 Score=28.71 Aligned_cols=60 Identities=12% Similarity=-0.010 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeEeeccCCcchH
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG-LASIPLVPLYSDM 90 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~-IevIP~i~~~GH~ 90 (131)
...++.+.++++++.++.+|+..+.+- | |.+....++-+|++++++++ +. ...+.|=|.+
T Consensus 42 ~~~ls~eei~~li~~~~~~Gv~~I~~t--------G----GEPllr~dl~~li~~i~~~~~l~-~i~itTNG~l 102 (329)
T PRK13361 42 DQVLSLEELAWLAQAFTELGVRKIRLT--------G----GEPLVRRGCDQLVARLGKLPGLE-ELSLTTNGSR 102 (329)
T ss_pred cCCCCHHHHHHHHHHHHHCCCCEEEEE--------C----cCCCccccHHHHHHHHHhCCCCc-eEEEEeChhH
Confidence 456899999999999999998776651 2 34667778999999999876 32 2356777764
No 209
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=64.21 E-value=31 Score=25.91 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
.++.+++++++.+|...|+++++++.+.--+..++++
T Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~ 140 (217)
T cd00331 104 ALDDEQLKELYELARELGMEVLVEVHDEEELERALAL 140 (217)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc
Confidence 4566999999999999999999999766555555553
No 210
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=64.09 E-value=9.6 Score=30.90 Aligned_cols=25 Identities=4% Similarity=-0.172 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 179 tG~~~~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 179 TGAVADLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred CCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 4568999999999999999998776
No 211
>PRK07681 aspartate aminotransferase; Provisional
Probab=64.08 E-value=9 Score=31.39 Aligned_cols=26 Identities=12% Similarity=0.039 Sum_probs=23.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|..+|.+++++|++.|+++++-||
T Consensus 178 PTG~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 178 PVPAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred CcCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 34578999999999999999999887
No 212
>PRK08175 aminotransferase; Validated
Probab=63.98 E-value=9.4 Score=31.23 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++|+-||
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~i~ii 201 (395)
T PRK08175 177 TAQCVELEFFEKVVALAKRYDVLVV 201 (395)
T ss_pred CCCCCCHHHHHHHHHHHHHcCcEEE
Confidence 4679999999999999999999777
No 213
>KOG0464|consensus
Probab=63.86 E-value=4.5 Score=35.28 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCeE-------------eeccCCcchHHHHhcc
Q psy2348 64 TEIFIILAAAESNGLAS-------------IPLVPLYSDMDFVLKV 96 (131)
Q Consensus 64 eeikeiv~yA~~~~Iev-------------IP~i~~~GH~~~~L~~ 96 (131)
+-+.+..+--++|||+| |-+||||||..+-|..
T Consensus 74 dtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~lev 119 (753)
T KOG0464|consen 74 DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEV 119 (753)
T ss_pred chHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEH
Confidence 44667888899999998 7799999999887654
No 214
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=63.85 E-value=51 Score=29.49 Aligned_cols=95 Identities=17% Similarity=0.077 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch-----HHH
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD-----MDF 92 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH-----~~~ 92 (131)
.+..+++++.++++.+...|++. +.+.||. |..|.+++++++...++.- . +| |..=+| .-+
T Consensus 148 sp~~t~e~~~~~ak~l~~~Gad~--I~IkDta---------G~l~P~~v~~lv~alk~~~-~-ip-i~~H~Hnt~Gla~a 213 (596)
T PRK14042 148 SPVHTLDNFLELGKKLAEMGCDS--IAIKDMA---------GLLTPTVTVELYAGLKQAT-G-LP-VHLHSHSTSGLASI 213 (596)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCE--EEeCCcc---------cCCCHHHHHHHHHHHHhhc-C-CE-EEEEeCCCCCcHHH
Confidence 56889999999999999999975 6666654 7899999999999988752 3 33 344444 211
Q ss_pred -Hhcccccc-cccccCCCCceecCCChhHHHHHHHH
Q psy2348 93 -VLKVKEFA-KMRQNFNDTRFICPNARSSLDLVFKM 126 (131)
Q Consensus 93 -~L~~p~~~-~l~e~~~~~~~lcp~~~~t~~f~~~l 126 (131)
.|+.=+-. ..-+.....-.-|++|+.+..++..+
T Consensus 214 n~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L 249 (596)
T PRK14042 214 CHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAAL 249 (596)
T ss_pred HHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHH
Confidence 12210000 01122223334588898888877543
No 215
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=63.84 E-value=18 Score=29.33 Aligned_cols=31 Identities=6% Similarity=-0.055 Sum_probs=23.0
Q ss_pred CCCCCHH----HHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 58 TNPFRET----EIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 58 ~~~YT~e----eikeiv~yA~~~~IevIP~i~~~G 88 (131)
+..++-| .-|+++++|..+|+.|=-|+=..|
T Consensus 108 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vg 142 (286)
T PRK08610 108 ASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVG 142 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccC
Confidence 3445544 478999999999999988775443
No 216
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=63.73 E-value=9.8 Score=31.88 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++|+-||
T Consensus 203 tG~v~~~~~l~~i~~~a~~~~i~ii 227 (430)
T PLN00145 203 CGSVYSYEHLAKIAETARKLGILVI 227 (430)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4568999999999999999999887
No 217
>PTZ00377 alanine aminotransferase; Provisional
Probab=63.70 E-value=9.7 Score=32.30 Aligned_cols=57 Identities=12% Similarity=0.014 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
-++++.|++.+.....-|-+.-.+.+- .| + -+.|..||.+++++|++.|+++++-||
T Consensus 199 ~~d~~~l~~~l~~~~~~~~~~k~l~l~--~P--~-NPTG~~~s~e~~~~i~~~a~~~~~~iI 255 (481)
T PTZ00377 199 SLDQEELEEAYEQAVRNGITPRALVVI--NP--G-NPTGQVLTRDVMEEIIKFCYEKGIVLM 255 (481)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEE--CC--C-CCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 467888887775433222222122222 12 1 234678999999999999999999776
No 218
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=63.68 E-value=24 Score=28.85 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCEEEEEeeccCCCCCC-CC-CCCCCCHHHHHHHHHHHHHcCCeEe--e-ccCCcchHH
Q psy2348 29 ILPILAYTGATSLLIEWEDTLPYSLG-FD-NTNPFRETEIFIILAAAESNGLASI--P-LVPLYSDMD 91 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed~~p~~~~-~~-~~~~YT~eeikeiv~yA~~~~IevI--P-~i~~~GH~~ 91 (131)
.++.|+..|+|.+.+-++. +..+ ++ -+-..|.+++.+.++.|++.|+..| = -+..||.+.
T Consensus 100 ~l~~l~~~GvnRiSiGvQS---~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~ 164 (350)
T PRK08446 100 WLKGMKNLGVNRISFGVQS---FNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNK 164 (350)
T ss_pred HHHHHHHcCCCEEEEeccc---CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCH
Confidence 3334444566666665553 2222 11 1235799999999999999998632 1 233466643
No 219
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=63.57 E-value=23 Score=21.48 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 25 ~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
.+++++...++.|++.+-+ -|.. |-....++..++++.||.+||-++.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i--TDh~------------~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI--TDHG------------NLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE--eeCC------------cccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3678899999999987554 1111 1111345667788899999996653
No 220
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=63.54 E-value=6.9 Score=28.22 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=33.4
Q ss_pred HHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 30 LPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 30 i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
++.++++|+.++.+...+..++.. . .++++++.+.++++||+|+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~------~--~~~~~~~~~~~~~~gl~i~ 44 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE------K--DDEAEELRRLLEDYGLKIA 44 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH------H--HHHHHHHHHHHHHTTCEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc------c--hHHHHHHHHHHHHcCCeEE
Confidence 467899999998887655333221 1 7899999999999999944
No 221
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=63.28 E-value=28 Score=27.48 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=41.0
Q ss_pred HHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2348 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK 95 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~ 95 (131)
+++.....|++.+.+-- ..++.+++++++++|+++|++++=++.+.-=.+.+++
T Consensus 125 qi~~a~~~GAD~VlLi~-------------~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~ 178 (260)
T PRK00278 125 QIYEARAAGADAILLIV-------------AALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK 178 (260)
T ss_pred HHHHHHHcCCCEEEEEe-------------ccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 56677777777766621 3457799999999999999999988887765666654
No 222
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=63.26 E-value=9.1 Score=32.57 Aligned_cols=57 Identities=11% Similarity=-0.023 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
-+.++.+.+.+......+.+.-.+.+- .| . -+-|..||.+++++|++.|+++++-||
T Consensus 172 ~~~~~~le~~~~~~~~~~~~~k~v~l~--nP--~-NPTG~~~s~e~l~~ll~~a~~~~~~iI 228 (468)
T PLN02450 172 QITESALEEAYQQAQKLNLKVKGVLIT--NP--S-NPLGTTTTRTELNLLVDFITAKNIHLI 228 (468)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeEEEEe--cC--C-CCCCcccCHHHHHHHHHHHHHCCcEEE
Confidence 345566666554422222222122232 12 1 234578999999999999999999887
No 223
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=63.26 E-value=9.9 Score=31.10 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++.||
T Consensus 179 tG~~~s~~~~~~l~~~~~~~~~~ii 203 (391)
T PRK07309 179 TGVTYSREQIKALADVLKKYDIFVI 203 (391)
T ss_pred CCcCcCHHHHHHHHHHHHHcCcEEE
Confidence 3568999999999999999999877
No 224
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=63.24 E-value=19 Score=29.64 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=30.0
Q ss_pred HHHHHHHcCCCEEEEEeeccCCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348 29 ILPILAYTGATSLLIEWEDTLPYSLG-F-DNTNPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed~~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~Ie 79 (131)
.++.|+..|+|.+.+-++.. ... + .-+...|.+++.+.+..+++.|+.
T Consensus 110 ~l~~l~~~G~~rvslGvQS~---~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 110 FFAALRAAGFTRVSLGMQSA---APHVLAVLDRTHTPGRAVAAAREARAAGFE 159 (375)
T ss_pred HHHHHHHcCCCEEEEecccC---CHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 33344445555555555431 111 1 113468999999999999999987
No 225
>PRK07337 aminotransferase; Validated
Probab=63.22 E-value=10 Score=30.84 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+|+++|++.|+++++-||
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~~~ii 200 (388)
T PRK07337 176 TGTSIAPDELRRIVEAVRARGGFTI 200 (388)
T ss_pred CCcCcCHHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999998766
No 226
>PRK08960 hypothetical protein; Provisional
Probab=63.15 E-value=10 Score=30.90 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|..+|.+++++|++.|+++++-||
T Consensus 177 PtG~~~~~~~~~~l~~~~~~~~~~li 202 (387)
T PRK08960 177 PTGTLLSRDELAALSQALRARGGHLV 202 (387)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEE
Confidence 45678999999999999999998766
No 227
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=63.06 E-value=29 Score=29.94 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348 23 LTYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMD 91 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~ 91 (131)
-...|+=|++|+++|+|..+ |.|..-+|- |. ++...++-| +++++.+.++||+.+--+ ++|-.++
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~-G~---~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~ 138 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSIAWTRIFPQ-GD---ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLV 138 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEeccchhhcCcC-CC---CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHH
Confidence 35578899999999999876 567777773 21 123455554 689999999999988765 5555553
No 228
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=62.80 E-value=7.2 Score=32.55 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeE
Q psy2348 58 TNPFRETEIFIILAAAESNGLAS 80 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~Iev 80 (131)
|.-||.+|+++|.++|+++||-+
T Consensus 144 GtVy~l~el~~i~~~~k~~~l~L 166 (342)
T COG2008 144 GTVYPLDELEAISAVCKEHGLPL 166 (342)
T ss_pred ceecCHHHHHHHHHHHHHhCCce
Confidence 56899999999999999999865
No 229
>KOG0256|consensus
Probab=62.46 E-value=59 Score=28.18 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=46.7
Q ss_pred eEEeecC-CCCCCHHHHHHHHHHHHHcC--CCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 11 LVHLDLK-GAPPSLTYLKEILPILAYTG--ATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 11 g~mlD~~-~~~~~~~~lk~~i~~la~~g--~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.+|++-+ +--.+++.+.+-...--+.| +.|+++-- |- -+=|..||+|++..++.+|.+.+|.||-
T Consensus 197 pv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitN----Ps---NPLG~~~~~e~L~~ll~Fa~~kniHvI~ 264 (471)
T KOG0256|consen 197 PVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITN----PS---NPLGTTLSPEELISLLNFASRKNIHVIS 264 (471)
T ss_pred EEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeC----CC---CCCCCccCHHHHHHHHHHHhhcceEEEe
Confidence 3666666 44567888887777666554 45766622 21 1234789999999999999999999874
No 230
>PLN02187 rooty/superroot1
Probab=62.42 E-value=10 Score=32.15 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 217 TG~v~s~e~l~~i~~~a~~~~i~iI 241 (462)
T PLN02187 217 CGNVYSHDHLKKVAETARKLGIMVI 241 (462)
T ss_pred CCCccCHHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999998776
No 231
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=62.35 E-value=21 Score=28.82 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=36.2
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
.+|||=+ .+.+.+++.|+ .|++++++-=.. .||+. ..+.-|++++||..+|+.|=-|+=..|
T Consensus 78 alHLDH~---~~~e~i~~ai~----~GftSVM~DgS~-lp~ee--------Ni~~T~~vv~~Ah~~gvsVEaElG~vg 139 (284)
T PRK12857 78 ALHLDHG---TDFEQVMKCIR----NGFTSVMIDGSK-LPLEE--------NIALTKKVVEIAHAVGVSVEAELGKIG 139 (284)
T ss_pred EEECCCC---CCHHHHHHHHH----cCCCeEEEeCCC-CCHHH--------HHHHHHHHHHHHHHcCCEEEEEeeecC
Confidence 4555533 34555555554 366665552211 22221 234578999999999999988875543
No 232
>PRK06207 aspartate aminotransferase; Provisional
Probab=62.34 E-value=11 Score=31.22 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=23.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|..+|.+++++|++.|+++++-||
T Consensus 190 PTG~~~s~e~l~~l~~~a~~~~~~iI 215 (405)
T PRK06207 190 PAGVVYSAEEIAQIAALARRYGATVI 215 (405)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 34678999999999999999998776
No 233
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=62.22 E-value=11 Score=30.46 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 154 tG~~~~~~~~~~l~~~a~~~~~~ii 178 (354)
T PRK06358 154 TGQLISKEEMKKILDKCEKRNIYLI 178 (354)
T ss_pred CCCccCHHHHHHHHHHHHhcCCEEE
Confidence 4568999999999999999999877
No 234
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=62.17 E-value=9.7 Score=30.86 Aligned_cols=25 Identities=4% Similarity=-0.164 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 177 TGAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred cCccCCHHHHHHHHHHHHHcCEEEE
Confidence 4568999999999999999998776
No 235
>KOG1232|consensus
Probab=62.15 E-value=5.5 Score=34.14 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 60 PFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
+=|-+|+-+|.+||.++.+-|||.
T Consensus 96 Pkst~eVS~ILkYCn~~kLAVVPQ 119 (511)
T KOG1232|consen 96 PKSTEEVSAILKYCNDRKLAVVPQ 119 (511)
T ss_pred CCCHHHHHHHHHhhccccEEEecC
Confidence 458899999999999999999996
No 236
>PRK08354 putative aminotransferase; Provisional
Probab=62.05 E-value=10 Score=30.01 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|..+|.+++++|++.|+++++-||
T Consensus 129 PTG~~~~~~~l~~l~~~a~~~~~~li 154 (311)
T PRK08354 129 PDGKFYNFKELKPLLDAVEDRNALLI 154 (311)
T ss_pred CCCCccCHHHHHHHHHHhhhcCcEEE
Confidence 34679999999999999999998776
No 237
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=62.04 E-value=10 Score=31.17 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|..||.+++++|++.|+++++-||
T Consensus 191 PTG~~~s~~~~~~l~~~a~~~~~~iI 216 (416)
T PRK09440 191 PTGNVLTDEELEKLDALARQHNIPLL 216 (416)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCcEE
Confidence 34568999999999999999999776
No 238
>PLN02656 tyrosine transaminase
Probab=62.04 E-value=11 Score=31.10 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 182 tG~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 182 CGNVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4578999999999999999998776
No 239
>PRK09265 aminotransferase AlaT; Validated
Probab=61.99 E-value=11 Score=30.94 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++|+-||
T Consensus 181 tG~~~~~~~~~~i~~~a~~~~~~ii 205 (404)
T PRK09265 181 TGAVYSKELLEEIVEIARQHNLIIF 205 (404)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999998776
No 240
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=61.97 E-value=20 Score=29.98 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCEEEEEeeccCCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348 28 EILPILAYTGATSLLIEWEDTLPYSLG-F-DNTNPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~Ie 79 (131)
+.++.|+..|+|.+.+-.+. +... + .-+...|.+++.+.++.|++.|++
T Consensus 116 e~l~~l~~~GvnrislGvQS---~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~ 166 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQA---FQDELLALCGRSHRVKDIFAAVDLIHQAGIE 166 (400)
T ss_pred HHHHHHHHCCCCEEEEEccc---CCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 34445555666666665553 2222 1 112368999999999999999987
No 241
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=61.91 E-value=38 Score=27.48 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCC-----CCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLG-----FDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~-----~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.++++.....|+.-+++- .+.+|+..+ |. .-...+++++++-+++++.||.++
T Consensus 50 l~~~l~~~~~~~I~~~R~s-S~l~P~~~h~~~~~w~-~~~~~~~~~~~~g~~~~~~~irls 108 (303)
T PRK02308 50 LLRILKYNIAHGIGLFRLS-SSLIPLATHPELEGWD-YIEPFKEELREIGEFIKEHNIRLS 108 (303)
T ss_pred HHHHHHHHHHCCCCEEEcc-cCcCCCCCChhhcccC-CCCCCHHHHHHHHHHHHHcCCCee
Confidence 3444444444554444432 356788765 22 236889999999999999988653
No 242
>PRK06108 aspartate aminotransferase; Provisional
Probab=61.90 E-value=11 Score=30.39 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 171 tG~~~~~~~~~~l~~~~~~~~~~li 195 (382)
T PRK06108 171 TGWTASRDDLRAILAHCRRHGLWIV 195 (382)
T ss_pred CCcccCHHHHHHHHHHHHHCCcEEE
Confidence 3467899999999999999998776
No 243
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.72 E-value=52 Score=25.38 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccC----------CCCCC-CCCCCCCCHHHHH-----------------HHHHH
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTL----------PYSLG-FDNTNPFRETEIF-----------------IILAA 72 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~----------p~~~~-~~~~~~YT~eeik-----------------eiv~y 72 (131)
.+.+...++.+.|...|++.+.+-+.... .|++- +.-+.-.|.+|.+ +++++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~~ 103 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLKA 103 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 46778888888999999987766653211 12211 2234456666654 68899
Q ss_pred HHHcCCeEeeccCCcchHHHHhc
Q psy2348 73 AESNGLASIPLVPLYSDMDFVLK 95 (131)
Q Consensus 73 A~~~~IevIP~i~~~GH~~~~L~ 95 (131)
|++++|.++|-+-||.=...+++
T Consensus 104 a~~~~i~~iPG~~TptEi~~a~~ 126 (212)
T PRK05718 104 AQEGPIPLIPGVSTPSELMLGME 126 (212)
T ss_pred HHHcCCCEeCCCCCHHHHHHHHH
Confidence 99999999999999987776654
No 244
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=61.71 E-value=13 Score=31.68 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeeccC---CcchHH
Q psy2348 24 TYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLVP---LYSDMD 91 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i~---~~GH~~ 91 (131)
...++=|++|+++|+|.+++ .|..-+|-. ..|...++.+ +++++.++++||+.|..+- +|-.++
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g----~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDG----FEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTS----SSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecc----cccccCHhHhhhhHHHHHHHHhhccceeeeeeeccccccee
Confidence 55778899999999998875 666666641 1245565554 7999999999999998875 554443
No 245
>PRK12677 xylose isomerase; Provisional
Probab=61.67 E-value=11 Score=31.61 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEee-cc--CCCCCCCCCCCCCCHHHHHHHHHHHHHcC--CeE----ee-------ccC
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWE-DT--LPYSLGFDNTNPFRETEIFIILAAAESNG--LAS----IP-------LVP 85 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~e-d~--~p~~~~~~~~~~YT~eeikeiv~yA~~~~--Iev----IP-------~i~ 85 (131)
.++.+++.|+.-+++|++.+.+.-- +. +++.......-....+=++++.+||++.| |.| .| .+.
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l~ 191 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILLP 191 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeeeC
Confidence 3677899999999999998877321 11 11111001001233466779999999855 533 33 356
Q ss_pred CcchHHHHhc
Q psy2348 86 LYSDMDFVLK 95 (131)
Q Consensus 86 ~~GH~~~~L~ 95 (131)
+.||+..+++
T Consensus 192 t~~~al~li~ 201 (384)
T PRK12677 192 TVGHALAFIA 201 (384)
T ss_pred CHHHHHHHHH
Confidence 7888777764
No 246
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=61.61 E-value=10 Score=32.32 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEeecc-CCcchHH
Q psy2348 58 TNPFRETEIFIILAAAESNGLASIPLV-PLYSDMD 91 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~IevIP~i-~~~GH~~ 91 (131)
|..||.+++++|.+.|+++||-||=-- +..+|+-
T Consensus 192 G~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~ 226 (460)
T PRK13238 192 GQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAY 226 (460)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhh
Confidence 368999999999999999999998543 4555443
No 247
>PRK06225 aspartate aminotransferase; Provisional
Probab=61.53 E-value=11 Score=30.52 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++|+-||
T Consensus 170 tG~~~~~~~~~~i~~~a~~~~~~ii 194 (380)
T PRK06225 170 LGSSYTEEEIKEFAEIARDNDAFLL 194 (380)
T ss_pred CCcCCCHHHHHHHHHHHHHCCcEEE
Confidence 3568999999999999999999876
No 248
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=61.32 E-value=29 Score=32.91 Aligned_cols=57 Identities=7% Similarity=0.047 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
.++.++.+.+++-|..|..+|+|.++.. .+|.. .+..+.|.+.||-|+-|.+.-+|-
T Consensus 364 ~G~a~t~e~~~~di~lmK~~g~NaVR~s---HyP~~--------------p~fydlcDe~GilV~dE~~~e~hg 420 (1027)
T PRK09525 364 HGQVMDEETMVQDILLMKQHNFNAVRCS---HYPNH--------------PLWYELCDRYGLYVVDEANIETHG 420 (1027)
T ss_pred cCccCCHHHHHHHHHHHHHCCCCEEEec---CCCCC--------------HHHHHHHHHcCCEEEEecCccccC
Confidence 3556899999999999999999999883 23321 256789999999999998765553
No 249
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=61.31 E-value=64 Score=25.48 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 61 FRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
+|.+.+.+++.-+.+.|...|=..||.|-+.
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~ 165 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSMY 165 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCC
Confidence 5566666666666666666666666666443
No 250
>PTZ00376 aspartate aminotransferase; Provisional
Probab=61.22 E-value=12 Score=30.91 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 189 TG~~~s~~~~~~l~~~a~~~~~~ii 213 (404)
T PTZ00376 189 TGVDPTEEQWKEIADVMKRKNLIPF 213 (404)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 4568999999999999999999777
No 251
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=61.15 E-value=6.9 Score=30.49 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeec---------cCCcchHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPL---------VPLYSDMD 91 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~---------i~~~GH~~ 91 (131)
.++.+++.++..+.+|++.+.+.-.. +.+. ....-....+-+++++++|++.||+|.=| +.++.++.
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~---~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~ 159 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGS---YLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELK 159 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCC---CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHH
Confidence 35678888889999999876652211 1100 00001234577899999999999998733 34555566
Q ss_pred HHhc
Q psy2348 92 FVLK 95 (131)
Q Consensus 92 ~~L~ 95 (131)
.+++
T Consensus 160 ~li~ 163 (279)
T cd00019 160 EIID 163 (279)
T ss_pred HHHH
Confidence 6665
No 252
>PRK06855 aminotransferase; Validated
Probab=61.12 E-value=11 Score=31.41 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=23.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+-|..||.+++++|++.|+++++-||
T Consensus 183 PTG~~~s~~~~~~l~~~a~~~~~~II 208 (433)
T PRK06855 183 PTGAVYPKEILREIVDIAREYDLFII 208 (433)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 34679999999999999999999887
No 253
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=60.82 E-value=20 Score=30.26 Aligned_cols=27 Identities=4% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 55 FDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 55 ~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.+...|..+-++++..|+.+-+|.|+
T Consensus 233 L~G~~dYdv~kvle~aE~i~~a~idvl 259 (414)
T COG2100 233 LAGRKDYDVKKVLEVAEYIANAGIDVL 259 (414)
T ss_pred hcCccccCHHHHHHHHHHHHhCCCCEE
Confidence 444558999999999999999999874
No 254
>PRK05839 hypothetical protein; Provisional
Probab=60.73 E-value=11 Score=30.65 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 168 TG~~~s~~~l~~i~~~~~~~~~~ii 192 (374)
T PRK05839 168 TGRTLSLEELIEWVKLALKHDFILI 192 (374)
T ss_pred cCcccCHHHHHHHHHHHHHcCCEEE
Confidence 3568999999999999999999888
No 255
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=60.71 E-value=40 Score=27.24 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES 75 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~ 75 (131)
.+.+.+.++++.+.++|++++.+. ..+||........+++.+|.+++.....+
T Consensus 175 ~n~~ei~~~~~~~~~lGv~~i~i~--p~~~~~~a~~~~~~l~~~e~~~~~~~~~~ 227 (318)
T TIGR03470 175 TDPEEVAEFFDYLTDLGVDGMTIS--PGYAYEKAPDQDHFLGRRQTKKLFREVLS 227 (318)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--cCcccccccccccccCHHHHHHHHHHHHh
Confidence 467778888888888888775552 23444321112346788887776655443
No 256
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=60.54 E-value=22 Score=29.37 Aligned_cols=24 Identities=4% Similarity=-0.125 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 64 TEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 64 eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
+.-|+++++|..+|+.|=-|+=..
T Consensus 126 ~~T~evv~~Ah~~GvsVEaElG~i 149 (321)
T PRK07084 126 ALTKKVVEYAHQFDVTVEGELGVL 149 (321)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeee
Confidence 457899999999999997776444
No 257
>PRK08912 hypothetical protein; Provisional
Probab=60.51 E-value=11 Score=30.60 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 172 tG~~~s~~~~~~i~~~~~~~~~~ii 196 (387)
T PRK08912 172 AGKVFPREELALLAEFCQRHDAVAI 196 (387)
T ss_pred cCcccCHHHHHHHHHHHHHCCeEEE
Confidence 3568999999999999999998776
No 258
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=60.50 E-value=12 Score=30.08 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++|+-||
T Consensus 149 tG~~~~~~~~~~l~~~a~~~~~~ii 173 (350)
T TIGR03537 149 TGATAPRSYLKETIAMCREHGIILC 173 (350)
T ss_pred cCcccCHHHHHHHHHHHHHcCcEEE
Confidence 4568999999999999999998666
No 259
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=60.31 E-value=12 Score=30.97 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|.-+|.+++++|++.|+++++-||
T Consensus 182 PTG~~~s~~~~~~l~~~a~~~~~~ii 207 (409)
T PLN00143 182 PCGSVYSYEHLNKIAETARKLGILVI 207 (409)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCeEE
Confidence 34678999999999999999998776
No 260
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=60.19 E-value=19 Score=30.57 Aligned_cols=65 Identities=14% Similarity=0.022 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc--CCcchHHH
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV--PLYSDMDF 92 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i--~~~GH~~~ 92 (131)
.++++.|++.|.+.+.+-+|..-+-.-..-++ ..|.+++.+.++.|++.||.+.-.+ -.||.+..
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K-~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e 353 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKK-GLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRE 353 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHH
Confidence 45667777777777777666421100001122 4688899999999999999877554 44555443
No 261
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=60.17 E-value=30 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~ 92 (131)
.+|.+++.+++..+.+.|+..|=.-||.|.+.-
T Consensus 133 ~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P 165 (237)
T PF00682_consen 133 RTDPEELLELAEALAEAGADIIYLADTVGIMTP 165 (237)
T ss_dssp GSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-H
T ss_pred cccHHHHHHHHHHHHHcCCeEEEeeCccCCcCH
Confidence 566666666666666666666666666666543
No 262
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=60.11 E-value=16 Score=31.40 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec--cCCcch
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL--VPLYSD 89 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~--i~~~GH 89 (131)
.++++.|++.|.+.+.+-+|..-+-.-..-++ ..|.+++.+.++.+++.||.+.-. +-.||.
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K-~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e 350 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFRK-GTTTSTNKEAIRLLRQHNILSEAQFITGFENE 350 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhcC-CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCC
Confidence 46778888888888888877532210001123 458999999999999999976543 333555
No 263
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=60.09 E-value=46 Score=26.07 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
+..-+.+|+.+|.+++-+ ||-.| -=+.||++.+.+.|+++|+.+=|
T Consensus 137 vetAiaml~dmG~~SiKf-----fPm~G------l~~leE~~avAkA~a~~g~~lEP 182 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKF-----FPMGG------LKHLEELKAVAKACARNGFTLEP 182 (218)
T ss_dssp HHHHHHHHHHTT--EEEE--------TT------TTTHHHHHHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHHHcCCCeeeE-----eecCC------cccHHHHHHHHHHHHHcCceeCC
Confidence 456788999999998765 45444 55789999999999999999965
No 264
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=59.94 E-value=12 Score=32.10 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 294 TG~v~~~~~l~~i~~~a~~~~~~ii 318 (517)
T PRK13355 294 TGALYPREVLQQIVDIAREHQLIIF 318 (517)
T ss_pred CCcCcCHHHHHHHHHHHHHcCcEEE
Confidence 4568999999999999999998776
No 265
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=59.82 E-value=59 Score=24.79 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc----CCeEeeccCCcch
Q psy2348 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN----GLASIPLVPLYSD 89 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~----~IevIP~i~~~GH 89 (131)
..+.+.++.++..|.+ +.+.+ +. -+| -.-+.+|+++|++++++. +++++|....+++
T Consensus 148 ~~~l~~i~~l~~~g~~-v~i~~--~l-i~g-----~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~ 208 (246)
T PRK11145 148 HRTLEFARYLAKRNQK-TWIRY--VV-VPG-----WTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKH 208 (246)
T ss_pred HHHHHHHHHHHhCCCc-EEEEE--EE-ECC-----CCCCHHHHHHHHHHHHhcCCcceEEEecCCccchh
Confidence 4455556667766653 22221 11 122 234677888888887763 5677777766655
No 266
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=59.66 E-value=46 Score=26.90 Aligned_cols=77 Identities=8% Similarity=-0.038 Sum_probs=41.7
Q ss_pred eEEeecC---CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCC-----------CCCCCCCCCCCCHH----HHHHHHHH
Q psy2348 11 LVHLDLK---GAPPSLTYLKEILPILAYTGATSLLIEWEDTLP-----------YSLGFDNTNPFRET----EIFIILAA 72 (131)
Q Consensus 11 g~mlD~~---~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p-----------~~~~~~~~~~YT~e----eikeiv~y 72 (131)
.+.|.++ ..+...+.+..++..+|+-----+-+++.+... |.+-+-++..++-| .-|+++++
T Consensus 42 PvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~ 121 (282)
T TIGR01858 42 PVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDF 121 (282)
T ss_pred CEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3445553 233555666666665554211123444443221 11112234445544 47999999
Q ss_pred HHHcCCeEeeccCCc
Q psy2348 73 AESNGLASIPLVPLY 87 (131)
Q Consensus 73 A~~~~IevIP~i~~~ 87 (131)
|..+||.|=-|+=..
T Consensus 122 Ah~~gv~VEaElG~v 136 (282)
T TIGR01858 122 CHRQDCSVEAELGRL 136 (282)
T ss_pred HHHcCCeEEEEEEec
Confidence 999999998776444
No 267
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=59.41 E-value=13 Score=29.69 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 135 TG~~~s~~~~~~l~~~a~~~~~~iI 159 (332)
T PRK06425 135 LGNLISRDSLLTISEICRKKGALLF 159 (332)
T ss_pred cCCccCHHHHHHHHHHHHHcCCEEE
Confidence 4568999999999999999998776
No 268
>PRK02227 hypothetical protein; Provisional
Probab=59.35 E-value=28 Score=27.64 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348 28 EILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~Ie 79 (131)
.+.+..+..|+.+.++ ||+--+|. +- .+++.++++++++-|+++|+.
T Consensus 135 ~l~~~a~~aGf~g~Ml---DTa~Kdg~~Lf--d~l~~~~L~~Fv~~ar~~Gl~ 182 (238)
T PRK02227 135 SLPAIAADAGFDGAML---DTAIKDGKSLF--DHMDEEELAEFVAEARSHGLM 182 (238)
T ss_pred HHHHHHHHcCCCEEEE---ecccCCCcchH--hhCCHHHHHHHHHHHHHcccH
Confidence 5777888899999988 55533332 22 489999999999999999975
No 269
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=59.34 E-value=38 Score=25.12 Aligned_cols=47 Identities=15% Similarity=-0.046 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH 89 (131)
.++.++..|++-+.++.+. +...+.+++++|+++|+.+++.+-+++-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~--------------~~~~~~~~i~~~~~~g~~~~~~~~~~~t 114 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA--------------DDATIKGAVKAAKKHGKEVQVDLINVKD 114 (206)
T ss_pred HHHHHHHcCCCEEEEeccC--------------CHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 4677778888776665431 2357899999999999999998755543
No 270
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=59.33 E-value=50 Score=25.17 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~ 92 (131)
++.+++.+......|+. +.+..++.+. ..++.+++.++++.+.+.|...|=..||.|.+.-
T Consensus 114 ~~~~~~~i~~a~~~G~~-v~~~~~~~~~--------~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P 174 (265)
T cd03174 114 LENAEEAIEAAKEAGLE-VEGSLEDAFG--------CKTDPEYVLEVAKALEEAGADEISLKDTVGLATP 174 (265)
T ss_pred HHHHHHHHHHHHHCCCe-EEEEEEeecC--------CCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCH
Confidence 56666777777778863 5555555331 1589999999999999999999999999997643
No 271
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=59.20 E-value=10 Score=32.86 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 60 PFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
+=|.+||.+++++|.++++.|+|-
T Consensus 62 P~s~eeV~~iv~~a~~~~ipv~~r 85 (499)
T PRK11230 62 PKQMEQVQALLAVCHRLRVPVVAR 85 (499)
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEE
Confidence 568999999999999999999984
No 272
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=59.06 E-value=34 Score=29.38 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348 24 TYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMD 91 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~ 91 (131)
...|+=|.+|+++|+|..+ |.|..-+|- | .+...++-| +++++.+.++||+.+--+ ++|-.++
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~-G----~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~ 124 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPD-G----YGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALH 124 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcC-C----CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHH
Confidence 5678899999999999876 467677774 2 124555555 689999999999988775 5555553
No 273
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=58.70 E-value=14 Score=29.80 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 161 tG~~~~~~~~~~i~~~a~~~~~~ii 185 (364)
T PRK07865 161 TGRVLGVDHLRKVVAWARERGAVVA 185 (364)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEE
Confidence 3568999999999999999998777
No 274
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=58.60 E-value=35 Score=27.55 Aligned_cols=57 Identities=21% Similarity=0.076 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCC---CCCHHHHHHHHHHHHHcCCeEe
Q psy2348 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTN---PFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~---~YT~eeikeiv~yA~~~~IevI 81 (131)
+.+++++...+..|+.-+++- .+.+|+..+-..+- ..=++++++|-++|+++||.+-
T Consensus 45 ~~l~~~L~~n~~~~I~~yRis-S~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRls 104 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRIS-SDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRLS 104 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE---TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHcCCCEEecC-cccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeEE
Confidence 344455555555665444443 46788876511111 1346789999999999999985
No 275
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=58.54 E-value=68 Score=26.04 Aligned_cols=109 Identities=6% Similarity=0.005 Sum_probs=65.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC--CEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 17 KGAPPSLTYLKEILPILAYTGA--TSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~--n~~~l~~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
+-...+-+.++++++.+.+.|+ .++.+.+.-+-.+..- + +...|. +-+++++..+++|+.+++.++-.=....
T Consensus 17 ~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~-d~~~fP--dp~~m~~~l~~~g~~~~~~~~P~v~~~~- 92 (339)
T cd06604 17 RWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTW-DKERFP--DPKELIKELHEQGFKVVTIIDPGVKVDP- 92 (339)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceee-ccccCC--CHHHHHHHHHHCCCEEEEEEeCceeCCC-
Confidence 3455688999999999999998 4555543321111110 1 122333 5689999999999999876653211100
Q ss_pred hccccccccc-----------------ccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 94 LKVKEFAKMR-----------------QNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 94 L~~p~~~~l~-----------------e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
.++.|.+.. .++.....++.+||++.+...+.++++
T Consensus 93 -~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 93 -GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred -CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 011121110 112223457999999999998888764
No 276
>PRK04296 thymidine kinase; Provisional
Probab=58.53 E-value=13 Score=27.71 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 58 TNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.++++.+++.+++..++..|++||=
T Consensus 87 aq~l~~~~v~~l~~~l~~~g~~vi~ 111 (190)
T PRK04296 87 AQFLDKEQVVQLAEVLDDLGIPVIC 111 (190)
T ss_pred cccCCHHHHHHHHHHHHHcCCeEEE
Confidence 4689999999999999999999985
No 277
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=58.52 E-value=25 Score=28.89 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 59 NPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevI 81 (131)
...|.+++.+.++.+++.|+..|
T Consensus 131 r~~~~~~~~~~i~~l~~~g~~~v 153 (377)
T PRK08599 131 RTHNEEDVYEAIANAKKAGFDNI 153 (377)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcE
Confidence 36899999999999999998643
No 278
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=58.42 E-value=26 Score=28.41 Aligned_cols=67 Identities=4% Similarity=0.007 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHcCCC---EEEEEeeccCC-----------CCCCCCCCCCCCHH----HHHHHHHHHHHcCCeEee
Q psy2348 21 PSLTYLKEILPILAYTGAT---SLLIEWEDTLP-----------YSLGFDNTNPFRET----EIFIILAAAESNGLASIP 82 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n---~~~l~~ed~~p-----------~~~~~~~~~~YT~e----eikeiv~yA~~~~IevIP 82 (131)
.+.+.+..+++.+++ .++ -+-+++.+... |.+-+-++..++-| .-|+++++|..+|+.|=-
T Consensus 58 ~~~~~~~~~~~~~a~-~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEa 136 (285)
T PRK07709 58 TGFKTVVAMVKALIE-EMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEA 136 (285)
T ss_pred CCHHHHHHHHHHHHH-HcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 456667777777765 222 46667665432 22212234455544 479999999999999988
Q ss_pred ccCCcc
Q psy2348 83 LVPLYS 88 (131)
Q Consensus 83 ~i~~~G 88 (131)
|+=..|
T Consensus 137 ElG~ig 142 (285)
T PRK07709 137 ELGTVG 142 (285)
T ss_pred EEeccC
Confidence 875554
No 279
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=58.38 E-value=26 Score=28.90 Aligned_cols=49 Identities=6% Similarity=0.058 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCCEEEEEeeccCCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348 28 EILPILAYTGATSLLIEWEDTLPYSLG-F-DNTNPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~Ie 79 (131)
+.++.|+..|+|.+.+-++. +... + .-+..+|.+++.+.++.+++.|+.
T Consensus 104 e~l~~lk~~G~nrisiGvQS---~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 104 SQINLLKKNKVNRISLGVQS---MNNNILKQLNRTHTIQDSKEAINLLHKNGIY 154 (353)
T ss_pred HHHHHHHHcCCCEEEEeccc---CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 45555666677777776653 2222 1 112368999999999999999975
No 280
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=58.09 E-value=31 Score=28.21 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHcCCe-Eee--ccCCcchHHH
Q psy2348 60 PFRETEIFIILAAAESNGLA-SIP--LVPLYSDMDF 92 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~Ie-vIP--~i~~~GH~~~ 92 (131)
..|.+++.+.++.|++.|+. |-- -+-+||.+..
T Consensus 132 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~ 167 (360)
T TIGR00539 132 QHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLN 167 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHH
Confidence 68999999999999999996 434 3455777654
No 281
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=58.07 E-value=40 Score=26.40 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
..|.+.+.++++-+.+.|+..|=.-||.|.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~ 170 (268)
T cd07940 139 RTDLDFLIEVVEAAIEAGATTINIPDTVGYLT 170 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCC
Confidence 35555556666666666666666666655544
No 282
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=58.00 E-value=20 Score=30.46 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCe
Q psy2348 59 NPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~Ie 79 (131)
...|.+++.+.++.|++.|++
T Consensus 183 R~~~~~~~~~ai~~lr~~G~~ 203 (453)
T PRK13347 183 RIQPEEMVARAVELLRAAGFE 203 (453)
T ss_pred CCCCHHHHHHHHHHHHhcCCC
Confidence 358999999999999999986
No 283
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.92 E-value=19 Score=29.59 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCC-CCCHHHHHHHHHHHHHcCCeEe
Q psy2348 25 YLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTN-PFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 25 ~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~-~YT~eeikeiv~yA~~~~IevI 81 (131)
.+.++++.....|+.-+++- .+.+||..+ ....- ..-+++.++|-++|+++||.+-
T Consensus 53 ~l~~~L~~n~~~~I~f~Ris-S~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRLS 111 (312)
T TIGR00629 53 DTMKTLHWNIGHGIPFYRFS-SSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLT 111 (312)
T ss_pred HHHHHHHHHHHcCCcEEecC-ccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEEE
Confidence 34444444444555444443 467898876 11110 1334689999999999999985
No 284
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=57.66 E-value=43 Score=29.83 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.-|++.|+.+..+|++.+.. +. . |+ .=|.+|+..|-+||+++|+.++
T Consensus 359 ~NL~RHIenvr~FGvPvVVA-IN-K--Fd-------~DTe~Ei~~I~~~c~e~Gv~va 405 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVA-IN-K--FV-------TDTDAEIAALKELCEELGVEVA 405 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEE-Ee-C--CC-------CCCHHHHHHHHHHHHHcCCCEE
Confidence 56778888888999876553 11 1 21 3378899999999999999988
No 285
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=57.52 E-value=38 Score=29.17 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchH
Q psy2348 23 LTYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDM 90 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~ 90 (131)
-...++=|.+|+++|+|..+ |.|..-+|- | .+...++-| +++++.+.++||+.|-.+ ++|-++
T Consensus 52 yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~-g----~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L 122 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRISIAWSRIFPT-G----YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEAL 122 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEEecchhhccCC-C----CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHH
Confidence 35678889999999999876 467677774 2 124555554 689999999999988764 455444
No 286
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=57.50 E-value=42 Score=28.21 Aligned_cols=67 Identities=10% Similarity=-0.094 Sum_probs=41.7
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
+||.+=.-+. .++.-+++|+.|+.+|+..+..-+- +-.+ .. ..--+=.++|+.+|.+.|+++|--|+
T Consensus 4 ~GfSifp~~~--~~~~~~~Yi~~~~~~Gf~~IFtsl~---~~~~-~~---~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 4 LGFSIFPNRS--PKEKDIAYIDRMHKYGFKRIFTSLL---IPEE-DA---ELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred eeEEeccCCC--cchhHHHHHHHHHHcCccceeeecc---cCCc-hH---HHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 4555444222 3345589999999999987533110 0001 11 12234478999999999999997775
No 287
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=57.45 E-value=28 Score=28.73 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCCEEEEEeeccCCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348 28 EILPILAYTGATSLLIEWEDTLPYSLG-F-DNTNPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~Ie 79 (131)
+.++.|...|+|.+.+-.+.. ... + .-+...|.+++.+.++.|++.|+.
T Consensus 104 ~~l~~l~~~G~nrislGvQS~---~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~ 154 (370)
T PRK06294 104 SYIRALALTGINRISIGVQTF---DDPLLKLLGRTHSSSKAIDAVQECSEHGFS 154 (370)
T ss_pred HHHHHHHHCCCCEEEEccccC---CHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 344555566777666666542 222 1 112367999999999999999986
No 288
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=57.41 E-value=14 Score=30.56 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 190 tG~~~s~~~~~~l~~~a~~~~~~ii 214 (412)
T PTZ00433 190 CGSNFSRKHVEDIIRLCEELRLPLI 214 (412)
T ss_pred CCcccCHHHHHHHHHHHHHcCCeEE
Confidence 4568999999999999999998776
No 289
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=57.38 E-value=15 Score=30.06 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 181 tG~~~~~~~~~~l~~~a~~~~~~ii 205 (401)
T TIGR01264 181 CGSVFSRQHLEEILAVAERQCLPII 205 (401)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999998776
No 290
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=57.38 E-value=46 Score=27.61 Aligned_cols=71 Identities=27% Similarity=0.272 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
-+.+.+.+....+++.|.+.++.+. ..|.||. +++ .-.+.++.+.++|++.||.++=++=-+-|.+.+..+
T Consensus 104 Es~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~s--f~G---~g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~ 176 (335)
T PRK08673 104 ESEEQILEIARAVKEAGAQILRGGAFKPRTSPYS--FQG---LGEEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY 176 (335)
T ss_pred CCHHHHHHHHHHHHHhchhhccCcEecCCCCCcc--ccc---ccHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh
Confidence 4556666666677778887655433 2344543 222 228999999999999999999999999999999764
No 291
>PRK07777 aminotransferase; Validated
Probab=57.19 E-value=15 Score=29.91 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 58 TNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~IevI 81 (131)
|..+|.+++++|++.|+++++-||
T Consensus 173 G~~~~~~~~~~l~~~~~~~~~~li 196 (387)
T PRK07777 173 GTVLTAAELAAIAELAVEHDLLVI 196 (387)
T ss_pred CccCCHHHHHHHHHHHHhcCcEEE
Confidence 467899999999999999998877
No 292
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=57.19 E-value=97 Score=24.62 Aligned_cols=107 Identities=7% Similarity=-0.071 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEEEeeccCCCC-CC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 18 GAPPSLTYLKEILPILAYTGAT--SLLIEWEDTLPYS-LG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n--~~~l~~ed~~p~~-~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
....+-+.++++++.+++.|+. ++.+.+.-+..+. +. .-+...+- +.+++++..+++|+.++.-++ |+ ..
T Consensus 18 ~~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FP--d~~~~i~~l~~~G~~~~~~~~-P~-i~-- 91 (308)
T cd06593 18 SFYYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFP--DPEGMLSRLKEKGFKVCLWIN-PY-IA-- 91 (308)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCC--CHHHHHHHHHHCCCeEEEEec-CC-CC--
Confidence 3457888999999999999974 4444432221121 12 11222332 579999999999999998775 22 00
Q ss_pred hcccccccc-----------------cccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 94 LKVKEFAKM-----------------RQNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 94 L~~p~~~~l-----------------~e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
...+.|.+. ..++.....++..||++.++..+.++++
T Consensus 92 ~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 145 (308)
T cd06593 92 QKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPL 145 (308)
T ss_pred CCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHH
Confidence 011112111 0111223468899999999999988764
No 293
>PRK07683 aminotransferase A; Validated
Probab=57.17 E-value=14 Score=30.11 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|++.|+-||
T Consensus 174 tG~~~s~~~~~~l~~~~~~~~~~ii 198 (387)
T PRK07683 174 TGVTLSKEELQDIADVLKDKNIFVL 198 (387)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 4568999999999999999998776
No 294
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=57.03 E-value=14 Score=29.40 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..++.+++++|++.|+++|+-||
T Consensus 138 tG~~~~~~~~~~l~~~a~~~~~~ii 162 (330)
T TIGR01140 138 TGRLIPPETLLALAARLRARGGWLV 162 (330)
T ss_pred CCCCCCHHHHHHHHHHhHhcCCEEE
Confidence 4568999999999999999999776
No 295
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=56.97 E-value=48 Score=26.54 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEee---cc---------CCCCCCCCCCCCCC------HHHHHHHHHHHHHcCCeEee
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWE---DT---------LPYSLGFDNTNPFR------ETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~e---d~---------~p~~~~~~~~~~YT------~eeikeiv~yA~~~~IevIP 82 (131)
.+.+..+.+++.+++-|+|.+++-.= +. .||.+.-....-+| -+.+.++|+.|.++||++-
T Consensus 27 ~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~- 105 (289)
T PF13204_consen 27 LTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAA- 105 (289)
T ss_dssp --HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEE-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEE-
Confidence 35677889999999999999987541 11 11111000000111 3678999999999999985
Q ss_pred ccCCcch
Q psy2348 83 LVPLYSD 89 (131)
Q Consensus 83 ~i~~~GH 89 (131)
.|-+-|+
T Consensus 106 lv~~wg~ 112 (289)
T PF13204_consen 106 LVPFWGC 112 (289)
T ss_dssp EESS-HH
T ss_pred EEEEECC
Confidence 5545544
No 296
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=56.93 E-value=15 Score=30.00 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 185 TG~~~s~~~~~~l~~~a~~~~~~ii 209 (396)
T PRK09257 185 TGADLTPEQWDELAELLKERGLIPF 209 (396)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 4568999999999999999999876
No 297
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=56.87 E-value=42 Score=26.17 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCC----------CCCC-CCCCCCCCHHHHH-----------------HHHHH
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLP----------YSLG-FDNTNPFRETEIF-----------------IILAA 72 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p----------~~~~-~~~~~~YT~eeik-----------------eiv~y 72 (131)
.+++.-..+.+-|.+-|+..+.+-+....+ |..- +.-|.-+|.+|++ +++++
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~~ 101 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAKA 101 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 467888888999999999987776643222 2211 4445678888886 57889
Q ss_pred HHHcCCeEeeccCCcchHHHHhcc
Q psy2348 73 AESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 73 A~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
|..++|.++|=+-||.-...++.+
T Consensus 102 a~~~~ip~~PG~~TptEi~~Ale~ 125 (211)
T COG0800 102 ANRYGIPYIPGVATPTEIMAALEL 125 (211)
T ss_pred HHhCCCcccCCCCCHHHHHHHHHc
Confidence 999999999999999999988764
No 298
>KOG4277|consensus
Probab=56.84 E-value=9.2 Score=31.96 Aligned_cols=39 Identities=8% Similarity=0.007 Sum_probs=34.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeEeec-cCCcchHHHH
Q psy2348 55 FDNTNPFRETEIFIILAAAESNGLASIPL-VPLYSDMDFV 93 (131)
Q Consensus 55 ~~~~~~YT~eeikeiv~yA~~~~IevIP~-i~~~GH~~~~ 93 (131)
+.++|.=+++.|-+...-|+..=|++||+ ++++-|+++-
T Consensus 113 ~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~R 152 (468)
T KOG4277|consen 113 IDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQAR 152 (468)
T ss_pred eecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhc
Confidence 45667889999999999999999999999 9999999875
No 299
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=56.68 E-value=14 Score=30.45 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-c-cccccccccCCCCceecCCChhHHHHHHHH
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-V-KEFAKMRQNFNDTRFICPNARSSLDLVFKM 126 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~-p~~~~l~e~~~~~~~lcp~~~~t~~f~~~l 126 (131)
++=+..+++.|++++|.|+ .||+...+|. | .+|..++ ...++++++++++++.+=
T Consensus 52 ~~yv~~~l~~C~~~~Idv~----~P~~~~~~l~~~r~~F~a~G-----v~l~~~~~~~~l~~~~dK 108 (329)
T PF15632_consen 52 EEYVDWCLDFCKEHGIDVF----VPGRNRELLAAHRDEFEALG-----VKLLTASSAETLELADDK 108 (329)
T ss_pred HHHHHHHHHHHHHhCCeEE----EcCccHHHHHHHHHHHHHhC-----CEEEecCCHHHHHHHhhH
Confidence 4557889999999999998 6888888775 3 3444332 256777888888888763
No 300
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=56.52 E-value=83 Score=24.88 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=39.3
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG 77 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~ 77 (131)
+.-.-|..|. +++++.++++.+...|+.. +.+.||. |..|.+++.+++...+++.
T Consensus 129 ~~~~eda~r~--~~~~l~~~~~~~~~~g~~~--i~l~Dt~---------G~~~P~~v~~~~~~~~~~~ 183 (262)
T cd07948 129 RFSSEDSFRS--DLVDLLRVYRAVDKLGVNR--VGIADTV---------GIATPRQVYELVRTLRGVV 183 (262)
T ss_pred EEEEEeeCCC--CHHHHHHHHHHHHHcCCCE--EEECCcC---------CCCCHHHHHHHHHHHHHhc
Confidence 3444455554 3778888888888888875 5556654 6788889999998887753
No 301
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=56.46 E-value=47 Score=25.35 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=27.7
Q ss_pred HHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 31 PILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 31 ~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
+.++..|++.+.+++|.+ +++.+++++.+++|+.+=--++----.+.+
T Consensus 74 ~~~~~~g~~~i~~H~E~~---------------~~~~~~i~~ik~~g~k~GialnP~T~~~~~ 121 (201)
T PF00834_consen 74 EEFAEAGADYITFHAEAT---------------EDPKETIKYIKEAGIKAGIALNPETPVEEL 121 (201)
T ss_dssp HHHHHHT-SEEEEEGGGT---------------TTHHHHHHHHHHTTSEEEEEE-TTS-GGGG
T ss_pred HHHHhcCCCEEEEcccch---------------hCHHHHHHHHHHhCCCEEEEEECCCCchHH
Confidence 355666777777777631 246678888888887765555433333333
No 302
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=56.46 E-value=23 Score=27.06 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 25 ~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
-+.+.++.++++|++++.+-+ |+ ..+ +.++.+.++++||+|.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~----~~--------~~~---~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF----PY--------DWD---AEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC----Cc--------cCC---HHHHHHHHHHcCCeEE
Confidence 378999999999999987732 22 123 5556667889999986
No 303
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=56.45 E-value=16 Score=29.19 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 137 TG~~~s~~~l~~l~~~~~~~~~~iI 161 (330)
T PRK05664 137 TGRRFDPARLLAWHARLAARGGWLV 161 (330)
T ss_pred CCCccCHHHHHHHHHHHHhcCCEEE
Confidence 4578999999999999999999877
No 304
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=56.32 E-value=15 Score=29.60 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|.+.|+++++-||
T Consensus 155 tG~~~~~~~~~~i~~~a~~~~~~ii 179 (357)
T TIGR03539 155 TGRVLSVDELRAIVAWARERGAVVA 179 (357)
T ss_pred cCccCCHHHHHHHHHHHHHcCeEEE
Confidence 4568999999999999999999888
No 305
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=56.31 E-value=46 Score=28.73 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348 22 SLTYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMD 91 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~ 91 (131)
.-...|+=|++|+++|+|..+ |.|..-+|- |. ++...++-| +++++.+.++||+.+--+ ++|-.++
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~-G~---~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~ 144 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRMSIAWTRIFPK-GD---ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLI 144 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEecchhhcccC-CC---CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHH
Confidence 346678999999999999876 567777773 21 123455544 689999999999988765 6666554
No 306
>PRK06107 aspartate aminotransferase; Provisional
Probab=55.85 E-value=15 Score=30.23 Aligned_cols=25 Identities=4% Similarity=0.069 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHc-CCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESN-GLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~-~IevI 81 (131)
.|..||.+++++|++.|+++ ++-||
T Consensus 179 tG~~~s~~~~~~l~~~a~~~~~~~iI 204 (402)
T PRK06107 179 TGAVYSRAELRALADVLLRHPHVLVL 204 (402)
T ss_pred CCcCcCHHHHHHHHHHHHHcCCeEEE
Confidence 45689999999999999997 88877
No 307
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=55.81 E-value=16 Score=29.93 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++|+-||
T Consensus 182 tG~~~~~~~~~~i~~~a~~~~~~ii 206 (403)
T TIGR01265 182 CGSVFSRDHLQKIAEVARKLGIPII 206 (403)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999998776
No 308
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=55.80 E-value=13 Score=33.09 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
+=|.+||.+|+++|.+.+|-|||-=
T Consensus 45 P~SteEVa~IVklC~e~~vPVIPRG 69 (564)
T PRK11183 45 PGTLLELWRVLQACVAADKIIIMQA 69 (564)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 5699999999999999999999853
No 309
>PRK07568 aspartate aminotransferase; Provisional
Probab=55.78 E-value=15 Score=29.72 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 175 tG~~~~~~~~~~i~~~~~~~~~~ii 199 (397)
T PRK07568 175 TGVVYTKEELEMLAEIAKKHDLFLI 199 (397)
T ss_pred CCccCCHHHHHHHHHHHHHCCcEEE
Confidence 4568999999999999999998776
No 310
>PLN00175 aminotransferase family protein; Provisional
Probab=55.78 E-value=16 Score=30.35 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 200 tG~~~s~~~l~~l~~~a~~~~~~ii 224 (413)
T PLN00175 200 TGKMFTREELELIASLCKENDVLAF 224 (413)
T ss_pred CCcCCCHHHHHHHHHHHHHcCcEEE
Confidence 4568999999999999999998776
No 311
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=55.66 E-value=30 Score=28.83 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=64.1
Q ss_pred eEEeecCCCCCCHHHHH------HHHHHHHHcCCCEEEEEeeccCCCCCC------CC----------------------
Q psy2348 11 LVHLDLKGAPPSLTYLK------EILPILAYTGATSLLIEWEDTLPYSLG------FD---------------------- 56 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk------~~i~~la~~g~n~~~l~~ed~~p~~~~------~~---------------------- 56 (131)
++--.++++-|+.-.+. ++.......|+..+-+=.|..| |.|. ++
T Consensus 120 ~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~-F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~e 198 (338)
T PLN02460 120 GLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVLTDEKY-FQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYY 198 (338)
T ss_pred ceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEEecCcCc-CCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHH
Confidence 67778887777754443 5555677788888877666554 4443 00
Q ss_pred ----C-------CCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 57 ----N-------TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 57 ----~-------~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
+ ...++.+++++++++|++.|++++=||-+.--++.+|+.
T Consensus 199 Ar~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~ 249 (338)
T PLN02460 199 ARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGI 249 (338)
T ss_pred HHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc
Confidence 0 125899999999999999999999999999999999985
No 312
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=55.59 E-value=78 Score=25.37 Aligned_cols=32 Identities=9% Similarity=-0.113 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
..+.+.+.++++-+.+.|+..|=.-||-|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~ 182 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIGVGT 182 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccCccC
Confidence 45666666666666666666666666666554
No 313
>KOG4730|consensus
Probab=55.59 E-value=12 Score=32.60 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
.+=|.+|+++||++|.+.|..|.+-= .||+=.=
T Consensus 55 yP~teaeL~~lVa~A~~a~~kirvVg--~gHSp~~ 87 (518)
T KOG4730|consen 55 YPKTEAELVELVAAATEAGKKIRVVG--SGHSPSK 87 (518)
T ss_pred CCCCHHHHHHHHHHHHHcCceEEEec--ccCCCCc
Confidence 36799999999999999999998865 8887443
No 314
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=55.47 E-value=12 Score=32.92 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 60 PFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
+=|.+||.+++++|++++|-|+|-
T Consensus 140 P~s~eeV~~ivk~a~~~~ipv~pr 163 (555)
T PLN02805 140 PRSEEEVSKIVKSCNKYKVPIVPY 163 (555)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEE
Confidence 468999999999999999999993
No 315
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=55.37 E-value=83 Score=25.43 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 64 TEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 64 eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
+..++++++|..+|+.|--|+...
T Consensus 117 ~~t~~v~~~a~~~gv~vE~ElG~i 140 (293)
T PRK07315 117 KLAKEVVEKAHAKGISVEAEVGTI 140 (293)
T ss_pred HHHHHHHHHHHHcCCEEEEecCcc
Confidence 456899999999999997777544
No 316
>PRK07324 transaminase; Validated
Probab=55.24 E-value=17 Score=29.54 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.|.-+|.+++++|++.|+++++-||=
T Consensus 166 tG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 166 TGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 35689999999999999999987763
No 317
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=55.11 E-value=1.2e+02 Score=24.94 Aligned_cols=105 Identities=9% Similarity=-0.072 Sum_probs=64.3
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHHHHcCC--CEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPILAYTGA--TSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~--n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
-|+|. ++-...+-+.++++++.+.+.++ ..+.+.+.-+..|....-++..| -+.+++++.-.+.|+.+|+.++-.
T Consensus 11 lG~~q-sr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~F--Pdp~~mv~~L~~~G~klv~~i~P~ 87 (332)
T cd06601 11 LGFHQ-GCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGF--PNPKEMFDNLHNKGLKCSTNITPV 87 (332)
T ss_pred hhhhh-CCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCC--CCHHHHHHHHHHCCCeEEEEecCc
Confidence 35665 56666799999999999999998 56666554332222111112222 346889999999999998877643
Q ss_pred chHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHh
Q psy2348 88 SDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 88 GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
-. +.. .++.........||++.+.-.+.++
T Consensus 88 i~---------~g~--~~~~~~~~pDftnp~ar~wW~~~~~ 117 (332)
T cd06601 88 IS---------YGG--GLGSPGLYPDLGRPDVREWWGNQYK 117 (332)
T ss_pred ee---------cCc--cCCCCceeeCCCCHHHHHHHHHHHH
Confidence 33 111 1111123456678888776655543
No 318
>PRK09148 aminotransferase; Validated
Probab=55.08 E-value=16 Score=30.12 Aligned_cols=26 Identities=8% Similarity=-0.086 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 56 DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 56 ~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.|..||.+++++|++.|+++++-||
T Consensus 177 PtG~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 177 PTAYVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 34678999999999999999998776
No 319
>PRK12414 putative aminotransferase; Provisional
Probab=54.88 E-value=16 Score=29.76 Aligned_cols=25 Identities=4% Similarity=0.202 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 175 TG~~~s~~~~~~i~~~a~~~~~~ii 199 (384)
T PRK12414 175 SATVFSAADLARLAQLTRNTDIVIL 199 (384)
T ss_pred CCcCCCHHHHHHHHHHHHHCCeEEE
Confidence 3568999999999999999998776
No 320
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=54.86 E-value=22 Score=28.66 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.+.++.++++|+.|+-+-+ +.+.+-.+.+-..+|++-|+++++.|.
T Consensus 109 ~~~f~~~~~~Gv~GvKidF---------~~~d~Q~~v~~y~~i~~~AA~~~Lmvn 154 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDF---------MDRDDQEMVNWYEDILEDAAEYKLMVN 154 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHcCCCEEeeCc---------CCCCCHHHHHHHHHHHHHHHHcCcEEE
Confidence 4445555555555544422 223345666677899999999999885
No 321
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=54.45 E-value=57 Score=27.28 Aligned_cols=26 Identities=8% Similarity=-0.083 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
.+.-|++++||..+||.|=-|+=..|
T Consensus 122 I~~Trevve~Ah~~GvsVEaELG~ig 147 (347)
T PRK13399 122 VDVTRRVTEMAHAVGVSVEGELGCLG 147 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeecc
Confidence 45679999999999999988874443
No 322
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=54.40 E-value=52 Score=25.91 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
+++...+.+....+.|.+.+.- .. .+|.+|.++|.++|++.|+.|+-
T Consensus 77 ~p~~~~~~~~~al~~g~~vVig-------------tt-g~~~e~~~~l~~aA~~~g~~v~~ 123 (266)
T TIGR00036 77 TPEGVLNHLKFALEHGVRLVVG-------------TT-GFSEEDKQELADLAEKAGIAAVI 123 (266)
T ss_pred ChHHHHHHHHHHHHCCCCEEEE-------------CC-CCCHHHHHHHHHHHhcCCccEEE
Confidence 3455555666666666554322 11 37999999999999997766654
No 323
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=54.33 E-value=17 Score=29.20 Aligned_cols=25 Identities=16% Similarity=-0.020 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 155 TG~~~~~~~~~~i~~~a~~~~~~ii 179 (356)
T PRK08056 155 TGLLPERQLLQAIAERCKSLNIALI 179 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEE
Confidence 3568999999999999999998877
No 324
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=54.23 E-value=35 Score=26.41 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHH-cCCCEEEEEeeccCCCCCC------------CCCCC-CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 19 APPSLTYLKEILPILAY-TGATSLLIEWEDTLPYSLG------------FDNTN-PFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~-~g~n~~~l~~ed~~p~~~~------------~~~~~-~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
|..+-+..+.++...+. ++-+|+.+-+ ..|-+.|. ++..+ ..-..|+.+|.+.|++.|++.+--+
T Consensus 113 HI~p~~~~~~lf~~a~~~L~~gG~L~~Y-GPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~ 191 (204)
T PF06080_consen 113 HISPWSAVEGLFAGAARLLKPGGLLFLY-GPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDI 191 (204)
T ss_pred HhcCHHHHHHHHHHHHHhCCCCCEEEEe-CCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCccc
Confidence 44555666667766665 4455654433 33444443 22222 5777899999999999999999999
Q ss_pred CCcch
Q psy2348 85 PLYSD 89 (131)
Q Consensus 85 ~~~GH 89 (131)
+||..
T Consensus 192 ~MPAN 196 (204)
T PF06080_consen 192 DMPAN 196 (204)
T ss_pred ccCCC
Confidence 99973
No 325
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=54.20 E-value=19 Score=24.42 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCC--CCCCCCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPY--SLGFDNTNPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~--~~~~~~~~~YT~eeikeiv~yA~~~~Ie 79 (131)
.+.++.|+..|.+.+.+.++...+- ...+. ...+.+++.+.++.+++.|+.
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIP 142 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCC
Confidence 7788999999999999988865542 11022 467889999999999999987
No 326
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=53.82 E-value=20 Score=30.11 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccccccccccCCCCceecCCC-hhHHHHHHHHHhh
Q psy2348 62 RETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNA-RSSLDLVFKMIGR 129 (131)
Q Consensus 62 T~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~-~~t~~f~~~ll~e 129 (131)
...++.+.+++++.+||.++.-+|..+-++..-.-.....+-.+-.....+-+++ .+|.+.+.+++.+
T Consensus 317 ~i~~~~~~l~~~Rs~gi~~~~i~Qs~~QL~~~Yg~~~~~~il~n~~~~~~~~~~~d~~ta~~iS~~lG~ 385 (469)
T PF02534_consen 317 RIPNFEEALSTGRSYGIRFWLIVQSLAQLEEKYGKEGAKTILGNCCVKIIFGGSNDEETAKYISELLGK 385 (469)
T ss_pred cHHHHHHHHHHHhhCCcEEEEEEEcHHHHHHHhhhhhHHHHHhCCCeEEEEecCCcHHHHHHHHHHhCC
Confidence 3588999999999999999999999999888432211222211111113455566 8899999988764
No 327
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=53.70 E-value=82 Score=24.49 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
+.+++.+......|+ .+.+..+ ..+.++.+.+.++++-+.+.|+..|=.-||.|.+.
T Consensus 110 ~~~~~~i~~a~~~G~-~v~~~~~----------~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~ 166 (259)
T cd07939 110 DQLRRLVGRAKDRGL-FVSVGAE----------DASRADPDFLIEFAEVAQEAGADRLRFADTVGILD 166 (259)
T ss_pred HHHHHHHHHHHHCCC-eEEEeec----------cCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 344455556666665 2333222 23468999999999999999999999999999875
No 328
>PRK09989 hypothetical protein; Provisional
Probab=53.65 E-value=62 Score=24.82 Aligned_cols=58 Identities=5% Similarity=-0.079 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCC-CCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGF-DNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~-~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.+.+++.|+..+.+|...+++... ..| .+.- ...-..+.+-++++.++|+++|+++.=
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~g-~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 142 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMAG-VVP-AGEDAERYRAVFIDNLRYAADRFAPHGKRILV 142 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECcc-CCC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 466899999999999988765321 111 1100 000023568899999999999998853
No 329
>PRK07550 hypothetical protein; Provisional
Probab=53.64 E-value=17 Score=29.44 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|.+.|+++++-||
T Consensus 176 tG~~~~~~~~~~i~~~~~~~~~~iI 200 (386)
T PRK07550 176 TGVVYPPELLHELYDLARRHGIALI 200 (386)
T ss_pred CCcccCHHHHHHHHHHHHHcCeEEE
Confidence 3567999999999999999998776
No 330
>PRK06290 aspartate aminotransferase; Provisional
Probab=53.38 E-value=17 Score=30.22 Aligned_cols=25 Identities=8% Similarity=-0.009 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++-||
T Consensus 192 TG~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 192 TGAVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 4578999999999999999998776
No 331
>PLN02397 aspartate transaminase
Probab=53.21 E-value=19 Score=30.04 Aligned_cols=25 Identities=8% Similarity=-0.150 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|.-+|++++++|++.|+++++-||
T Consensus 207 TG~v~s~e~l~~i~~~a~~~~~~vI 231 (423)
T PLN02397 207 TGVDPTPEQWEQISDLIKSKNHLPF 231 (423)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 4568999999999999999999887
No 332
>PRK05764 aspartate aminotransferase; Provisional
Probab=52.81 E-value=19 Score=29.20 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 177 tG~~~~~~~~~~l~~~a~~~~~~ii 201 (393)
T PRK05764 177 TGAVYSPEELEAIADVAVEHDIWVL 201 (393)
T ss_pred CCcccCHHHHHHHHHHHHHCCcEEE
Confidence 3567899999999999999998887
No 333
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=52.81 E-value=43 Score=25.41 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Ie 79 (131)
....+.+++.+++..+...|+.. +.+.||+ |..+.+++.++++..++..-.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~g~~~--i~l~Dt~---------G~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 131 ASRTDPEELLELAEALAEAGADI--IYLADTV---------GIMTPEDVAELVRALREALPD 181 (237)
T ss_dssp TGGSSHHHHHHHHHHHHHHT-SE--EEEEETT---------S-S-HHHHHHHHHHHHHHSTT
T ss_pred cccccHHHHHHHHHHHHHcCCeE--EEeeCcc---------CCcCHHHHHHHHHHHHHhccC
Confidence 45668888999999999998876 5667765 788999999999999987655
No 334
>PLN02814 beta-glucosidase
Probab=52.66 E-value=48 Score=28.91 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348 23 LTYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMD 91 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~ 91 (131)
-...|+=|++|+++|+|..+ |.|..-+|- | .|...++-| +++++-+.++||+.+--+ ++|-.++
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~-G----~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPN-G----RGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcC-C----CCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHH
Confidence 45678889999999999876 466676773 2 134566555 789999999999988654 5555554
No 335
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=52.60 E-value=5.7 Score=34.96 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=16.7
Q ss_pred HHHHHcCCeE-------------eeccCCcchHHH
Q psy2348 71 AAAESNGLAS-------------IPLVPLYSDMDF 92 (131)
Q Consensus 71 ~yA~~~~Iev-------------IP~i~~~GH~~~ 92 (131)
+.-++||||| |=-||||||+.+
T Consensus 47 DlEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 47 DLEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred chhhhcCcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 3457788876 567999999864
No 336
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=52.60 E-value=1.2e+02 Score=24.38 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG 77 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~ 77 (131)
...+.++++++++...|++++.+- .-.| ..-.+|.+|-+++++.|.+.-
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~-----GttG---E~~~Ls~eEr~~v~~~~v~~~ 70 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVL-----GTTG---ESPTLTLEERKEVLEAVVEAV 70 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC-----CCCc---cchhcCHHHHHHHHHHHHHHH
Confidence 778999999999999999997651 1112 223677777777777766654
No 337
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=52.58 E-value=30 Score=26.85 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHH-HHHcCCeEeeccC
Q psy2348 58 TNPFRETEIFIILAA-AESNGLASIPLVP 85 (131)
Q Consensus 58 ~~~YT~eeikeiv~y-A~~~~IevIP~i~ 85 (131)
+.+|-..+.++|.+- +.+.||++||.=+
T Consensus 129 g~~Y~~~~a~~i~~~~~~el~I~~v~~~~ 157 (215)
T PF01747_consen 129 GDFYDPYEAQEIFDEYAGELGIEPVPFPE 157 (215)
T ss_dssp CBSS-TTHHHHHHHHHHHHCTSEEEE---
T ss_pred cccCCccHHHHHHHcCcccCCceEEecce
Confidence 469999999999987 9999999999643
No 338
>PLN02998 beta-glucosidase
Probab=52.57 E-value=45 Score=29.04 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHHH
Q psy2348 22 SLTYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMDF 92 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~~ 92 (131)
.-...++=|++|+++|+|..+ |.|..-+|- | .|...++-| +++++.+.++||+.+-.+ ++|-.++.
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~-G----~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~ 153 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRFSISWSRLLPS-G----RGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALED 153 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEeeccHHhcCcC-C----CCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH
Confidence 345678899999999999876 567777774 2 123555554 689999999999988764 56665543
No 339
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.39 E-value=36 Score=20.78 Aligned_cols=58 Identities=10% Similarity=-0.002 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCC-CCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGF-DNTNPFRETEIFIILAAAESNGLAS 80 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~-~~~~~YT~eeikeiv~yA~~~~Iev 80 (131)
++-.|+++++.++. |+|-..+++.....-.+.+ -.=..-..+++.+|.+--++.|.++
T Consensus 8 kPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 8 RPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 45578999999999 9999888776543111110 0001234678888888777777654
No 340
>COG3505 VirD4 Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]
Probab=52.35 E-value=20 Score=32.12 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhccccc--ccccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEF--AKMRQNFNDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~--~~l~e~~~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
-+.+.+.++..+++|+..++-+|.+|-++.+ |.+- ...-++-.....+.+.+++|.+.+.+++.+
T Consensus 421 L~~l~~al~~~r~yG~~~~li~Qsl~QLe~~--YG~~~a~til~nc~~~~~f~~nd~~tA~~iS~~lG~ 487 (596)
T COG3505 421 LPDLEEALAEMRGYGIRLILIFQSLAQLEKI--YGREGANTILDNCAVRIFFAPNDDETARYVSKLLGD 487 (596)
T ss_pred hHHHHHHHHHhhccCceEEEEeccHHHHHHH--hhhhHHHHHhhhcceEEEecCCchHHHHHHHHHhCc
Confidence 3688999999999999999999999999984 2211 111111123357889999999999998865
No 341
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=52.25 E-value=91 Score=24.30 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
+.+|.+++.++++-+.+.|...|=.-||.|.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~ 168 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVYVTDSAGAML 168 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcC
Confidence 467889999999999999999998889999775
No 342
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=52.20 E-value=15 Score=29.16 Aligned_cols=15 Identities=7% Similarity=0.195 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHH
Q psy2348 21 PSLTYLKEILPILAY 35 (131)
Q Consensus 21 ~~~~~lk~~i~~la~ 35 (131)
.++.+++.++..++.
T Consensus 9 l~~~~~~d~Le~~g~ 23 (237)
T TIGR03849 9 LPPKFVEDYLKVCGD 23 (237)
T ss_pred CCHHHHHHHHHHhhh
Confidence 466666666666554
No 343
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=52.15 E-value=18 Score=28.39 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 58 TNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~IevI 81 (131)
++.|+.+++++|++.|+++|+-||
T Consensus 140 g~~~~~~~l~~i~~~~~~~~~~li 163 (338)
T cd06502 140 GTVYPLDELKAISALAKENGLPLH 163 (338)
T ss_pred ccccCHHHHHHHHHHHHHcCCeEe
Confidence 367799999999999999998775
No 344
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=51.86 E-value=86 Score=25.55 Aligned_cols=71 Identities=18% Similarity=-0.016 Sum_probs=46.1
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCC---C-----------CCCCCCC--------------
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSL---G-----------FDNTNPF-------------- 61 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~---~-----------~~~~~~Y-------------- 61 (131)
-.+++|. +.-.+.+.-.++++.|+.+++. .+|+.++-.. . ..+...+
T Consensus 187 ~~l~vDa-N~~~~~~~A~~~~~~l~~~~i~----~iEeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~ 261 (355)
T cd03321 187 VGLMVDY-NQSLTVPEAIERGQALDQEGLT----WIEEPTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGAC 261 (355)
T ss_pred CEEEEeC-CCCcCHHHHHHHHHHHHcCCCC----EEECCCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCC
Confidence 3578887 5567889999999999987752 3343322110 0 0011112
Q ss_pred -----------CHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 62 -----------RETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 62 -----------T~eeikeiv~yA~~~~IevIP~i~ 85 (131)
...+.+++.++|+.+||+++|-..
T Consensus 262 d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 296 (355)
T cd03321 262 DLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLF 296 (355)
T ss_pred CeEecCHhhhCCHHHHHHHHHHHHHcCCeecccch
Confidence 355677889999999999998764
No 345
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=51.79 E-value=43 Score=25.34 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHc---------CCeEeeccCCcc---hHHHHhccccccccc--------ccCCCCceecCCChh
Q psy2348 59 NPFRETEIFIILAAAESN---------GLASIPLVPLYS---DMDFVLKVKEFAKMR--------QNFNDTRFICPNARS 118 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~---------~IevIP~i~~~G---H~~~~L~~p~~~~l~--------e~~~~~~~lcp~~~~ 118 (131)
..=|.+|++++++.++.. .+.+||.|+|+. +++.+++.|....+- +.+. ...+.+++
T Consensus 92 ~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls~~lG~---~~~~~~~~ 168 (221)
T PF03328_consen 92 KVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLSASLGI---PGQPDHPE 168 (221)
T ss_dssp T--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTTT---TTSTTSHH
T ss_pred ccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHHhhhcc---CCCCcchH
Confidence 356899999999999876 599999999985 555556666555431 1121 11244566
Q ss_pred HHHHHHHHHh
Q psy2348 119 SLDLVFKMIG 128 (131)
Q Consensus 119 t~~f~~~ll~ 128 (131)
.......++.
T Consensus 169 ~~~a~~~v~~ 178 (221)
T PF03328_consen 169 VLEARSKVVL 178 (221)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 346
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=51.68 E-value=65 Score=22.24 Aligned_cols=80 Identities=11% Similarity=0.017 Sum_probs=52.5
Q ss_pred CCceeEEeecCCCC-CCHHHHHHHHHHHHH-cCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcC----C
Q psy2348 7 FKEVLVHLDLKGAP-PSLTYLKEILPILAY-TGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNG----L 78 (131)
Q Consensus 7 f~~Rg~mlD~~~~~-~~~~~lk~~i~~la~-~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~----I 78 (131)
|+.-||.+=++=+. .+.+.+-.++|.+-. .-.|++.+.=.....+.|- ....|.-|.++-..+.+.-+.+. +
T Consensus 12 FqelGF~v~~~~~~~~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~vc~~~~gs~tee~R~~v~~WL~~~~ev~~v 91 (101)
T PF04320_consen 12 FQELGFEVSCRFAEGTSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFVCLQRYGSCTEEDRAAVEAWLKARPEVSDV 91 (101)
T ss_pred hheeEEEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEEEeccCCCCCHHHHHHHHHHHHhCCCcceE
Confidence 67778888887333 777777777775443 3335544333222233343 22456899999999999999998 6
Q ss_pred eEeeccCC
Q psy2348 79 ASIPLVPL 86 (131)
Q Consensus 79 evIP~i~~ 86 (131)
+|-|++|.
T Consensus 92 ~vs~L~D~ 99 (101)
T PF04320_consen 92 EVSELVDA 99 (101)
T ss_pred Eecceeec
Confidence 77777763
No 347
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=51.66 E-value=84 Score=24.84 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~ 92 (131)
+++.+......|+ .+.+..+|.| ..+.+++.++++-+.+.|...|=.-||.|.+.-
T Consensus 114 ~~~~i~~a~~~G~-~v~~~~eda~----------r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P 169 (262)
T cd07948 114 AVEVIEFVKSKGI-EVRFSSEDSF----------RSDLVDLLRVYRAVDKLGVNRVGIADTVGIATP 169 (262)
T ss_pred HHHHHHHHHHCCC-eEEEEEEeeC----------CCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCH
Confidence 3334444445565 3556666654 234788999999999999999999999998753
No 348
>KOG0258|consensus
Probab=51.46 E-value=99 Score=26.80 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=50.3
Q ss_pred eeEEeec-CCCCCCHHHHHHHHHHHHHcCCCEEEE-EeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 10 VLVHLDL-KGAPPSLTYLKEILPILAYTGATSLLI-EWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 10 Rg~mlD~-~~~~~~~~~lk~~i~~la~~g~n~~~l-~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
..+.||- ++--..++.|++.++.-. -++|.-.+ -+. +| -+-|...|.+-|++|+.+|++.|+-++..
T Consensus 186 v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvIN-----PG-NPTGqvls~e~ie~i~~fa~~~~l~llaD 254 (475)
T KOG0258|consen 186 VPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVIN-----PG-NPTGQVLSEENIEGIICFAAEEGLVLLAD 254 (475)
T ss_pred cceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEEC-----CC-CccchhhcHHHHHHHHHHHHHcCeEEech
Confidence 4567888 477788999999998877 67764333 222 23 23356899999999999999999999873
No 349
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=51.25 E-value=45 Score=25.73 Aligned_cols=79 Identities=22% Similarity=0.198 Sum_probs=55.2
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec-cCCCCCCCCCCCCC--CHHHHHH-HHHHHHHcCCeEeeccCCcc
Q psy2348 13 HLDLKGAPPSLTYLKEILPILAYTGATSLLIEWED-TLPYSLGFDNTNPF--RETEIFI-ILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 13 mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed-~~p~~~~~~~~~~Y--T~eeike-iv~yA~~~~IevIP~i~~~G 88 (131)
.+++.=+.++.+.+..++..++++|++.+.+-..+ +.. . ... ... ..+-++. +++-|++-+-..+|+|..+-
T Consensus 75 ~l~l~~al~k~~~~e~il~k~tELGV~~i~p~~sers~~--~-~~~-~~~~~k~~r~~~i~~~A~~Qs~r~~~P~i~~~~ 150 (234)
T PRK11713 75 RLTLAQALPKGDRLELILQKATELGVSAIIPLISERSVV--K-LDG-ERADKKLERWQKIAIEAAEQSGRTRIPEVRPPI 150 (234)
T ss_pred eEEEEEeecCCccHHHHHHHHHHhCcCeEEEEEecccee--c-ccc-hhhHHHHHHHHHHHHHHHHhcCCCCCCEEcCcC
Confidence 46666667888999999999999999998764432 210 0 000 111 2344544 55667788889999999998
Q ss_pred hHHHHhc
Q psy2348 89 DMDFVLK 95 (131)
Q Consensus 89 H~~~~L~ 95 (131)
-...+++
T Consensus 151 ~~~~~l~ 157 (234)
T PRK11713 151 SLKEFLE 157 (234)
T ss_pred CHHHHHh
Confidence 8888876
No 350
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=51.15 E-value=85 Score=25.40 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 64 TEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 64 eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
+.-|+++++|..+||.|=-|+=..
T Consensus 118 ~~T~~vv~~Ah~~gv~VEaElG~v 141 (288)
T TIGR00167 118 ELTKKVVERAHKMGVSVEAELGTL 141 (288)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeec
Confidence 347899999999999998886444
No 351
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=51.12 E-value=1.2e+02 Score=24.14 Aligned_cols=61 Identities=7% Similarity=-0.034 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
+++.+......|. .+...++.+|-. ...+..+.+.+.++++-+.+.|...|=.-||.|.+.
T Consensus 116 ~~~~v~~ak~~G~-~v~~~i~~~f~~----~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~ 176 (274)
T cd07938 116 FEPVAELAKAAGL-RVRGYVSTAFGC----PYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVAT 176 (274)
T ss_pred HHHHHHHHHHCCC-eEEEEEEeEecC----CCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccC
Confidence 3344444555554 234444443311 112356777777777777777777777777777764
No 352
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=50.88 E-value=45 Score=27.43 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=40.3
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHH----HHHHHHHHHHcC
Q psy2348 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETE----IFIILAAAESNG 77 (131)
Q Consensus 12 ~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~ee----ikeiv~yA~~~~ 77 (131)
.-+|++..-. .+.+.+.++.+...|+.|+.|-.=|.|.+...-..+...++++ +++|.++|++++
T Consensus 136 ~~vd~~~~~W-~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~ 204 (315)
T TIGR01370 136 YDVKYWDPEW-KAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQN 204 (315)
T ss_pred eeEecccHHH-HHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHC
Confidence 4567754322 4456666888889999999987767664432111222555555 567777888653
No 353
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=50.81 E-value=64 Score=25.46 Aligned_cols=44 Identities=23% Similarity=0.107 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
+++++.++++.+...|++. +.+-||. |..|.+++.+++...++.
T Consensus 149 ~~~~~~~~~~~~~~~g~~~--i~l~DT~---------G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 149 NPEYALATLKAAAEAGADW--LVLCDTN---------GGTLPHEIAEIVKEVRER 192 (273)
T ss_pred CHHHHHHHHHHHHhCCCCE--EEEecCC---------CCCCHHHHHHHHHHHHHh
Confidence 4555555555555555553 3344433 456666666666666553
No 354
>PLN03059 beta-galactosidase; Provisional
Probab=50.81 E-value=82 Score=29.50 Aligned_cols=60 Identities=7% Similarity=0.010 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
.+.++=+..|.++...|+|++..|+ .-.-|-+|.+. +=...|+.+.++.|++.|+-||=-
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~d---F~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYY---FEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeee---ccchHHHHHHHHHHHHcCCEEEec
Confidence 3567888999999999999987664 32223344311 223689999999999999999843
No 355
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.78 E-value=21 Score=29.42 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=27.0
Q ss_pred CCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 49 LPYSLG-F-DNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 49 ~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
|+|+|- + .+++++|.+.||++++..+.+++.+.=
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lh 36 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFH 36 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEE
Confidence 566665 1 235799999999999999999988763
No 356
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=50.75 E-value=43 Score=28.09 Aligned_cols=55 Identities=11% Similarity=-0.057 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCEEEEEee-cc-CCCCCCCCCCCCCC---HH-HHHHHHHHHHHcCCeEeec
Q psy2348 26 LKEILPILAYTGATSLLIEWE-DT-LPYSLGFDNTNPFR---ET-EIFIILAAAESNGLASIPL 83 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~e-d~-~p~~~~~~~~~~YT---~e-eikeiv~yA~~~~IevIP~ 83 (131)
.++.+..++..|+|.+++-+- .. .+..+ . ...|+ +. =+.++|..|.++||-|+=.
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~--~-~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD 135 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWALQATDG--D-NPYLIGLTQLKILDEAINWAKKLGIYVLID 135 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhhhccCC--C-CCCeecchHHHHHHHHHHHHHhcCeeEEEE
Confidence 378999999999999998553 11 11111 1 11222 33 4567799999999999744
No 357
>PRK07682 hypothetical protein; Validated
Probab=50.64 E-value=21 Score=28.84 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 167 tG~~~s~~~~~~l~~~~~~~~~~ii 191 (378)
T PRK07682 167 TGAVLNKSELEEIAVIVEKHDLIVL 191 (378)
T ss_pred cCcCcCHHHHHHHHHHHHHcCcEEE
Confidence 3568999999999999999998776
No 358
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=50.63 E-value=10 Score=24.21 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCeEee
Q psy2348 58 TNPFRETEIFIILAAAES-NGLASIP 82 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~-~~IevIP 82 (131)
++++|+.|+|+|.+-.++ +||.+-+
T Consensus 2 RH~LSkKe~k~~~~k~~~~ygIdi~~ 27 (65)
T PF09183_consen 2 RHFLSKKEIKEIKEKIKEKYGIDISG 27 (65)
T ss_dssp -EE--HHHHHHHHHHHHT-TT---TT
T ss_pred cccccHHHHHHHHHHHHHHhCcCCCc
Confidence 367899999999999998 9988766
No 359
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.55 E-value=44 Score=26.92 Aligned_cols=46 Identities=7% Similarity=0.113 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCC-CEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348 24 TYLKEILPILAYTGA-TSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS 80 (131)
Q Consensus 24 ~~lk~~i~~la~~g~-n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Iev 80 (131)
...+++||.-.++.+ -+++| |-+| ++-.| +++++.++||+++|++.
T Consensus 45 ~~a~~~~~~y~~~~~plgw~l------pndg---yg~~y--~~l~~~~~~~~~~g~~~ 91 (261)
T cd06596 45 DDARKVADKYKENDMPLGWML------PNDG---YGCGY--ENLKEVVDYLHANGVET 91 (261)
T ss_pred hhHHHHHHHHHhcCCCceeec------cCCC---CcchH--HHHHHHHHHHHHcCCcc
Confidence 445677777777666 23333 3344 23345 89999999999999975
No 360
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=50.49 E-value=48 Score=30.81 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=58.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
.+++...+.+.+.+..|..+|+|.++-- .||+. .+..+.|.++||-||=|...=+|-.. ..
T Consensus 314 ~G~~~~~~~~~~dl~lmk~~n~N~vRts---HyP~~--------------~~~ydLcDelGllV~~Ea~~~~~~~~--~~ 374 (808)
T COG3250 314 LGRVTDEDAMERDLKLMKEANMNSVRTS---HYPNS--------------EEFYDLCDELGLLVIDEAMIETHGMP--DD 374 (808)
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEec---CCCCC--------------HHHHHHHHHhCcEEEEecchhhcCCC--CC
Confidence 5788888889999999999999997762 33332 25668899999999999988888766 44
Q ss_pred ccccccc---------ccCCCCc--eecCCCh
Q psy2348 97 KEFAKMR---------QNFNDTR--FICPNAR 117 (131)
Q Consensus 97 p~~~~l~---------e~~~~~~--~lcp~~~ 117 (131)
|++.+.. .....|+ ..|.+||
T Consensus 375 ~~~~k~~~~~i~~mver~knHPSIiiWs~gNE 406 (808)
T COG3250 375 PEWRKEVSEEVRRMVERDRNHPSIIIWSLGNE 406 (808)
T ss_pred cchhHHHHHHHHHHHHhccCCCcEEEEecccc
Confidence 4444321 1123344 4688887
No 361
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=50.37 E-value=45 Score=27.28 Aligned_cols=49 Identities=20% Similarity=0.114 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCEEEEEeeccCCCCCC-CC-CCCCCCHHHHHHHHHHHHHcCCe
Q psy2348 28 EILPILAYTGATSLLIEWEDTLPYSLG-FD-NTNPFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p~~~~-~~-~~~~YT~eeikeiv~yA~~~~Ie 79 (131)
+.++.|+..|+|.+.+-++.. ... +. -+-..|.+++.+.++.+++.|+.
T Consensus 100 e~l~~l~~~G~~rvsiGvqS~---~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGLQAW---QNSLLKYLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HHHHHHHHcCCCEEEEECccC---CHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 455556666666666666431 111 11 12367999999999999999985
No 362
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=50.18 E-value=73 Score=26.52 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
-+.+++.++++.+...|++. +.+-||. |..|.+++.+++...+++
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~--I~l~DT~---------G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADR--VRFCDTV---------GILDPFTMYELVKELVEA 186 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCE--EEEeccC---------CCCCHHHHHHHHHHHHHh
Confidence 36778888888888888775 4455543 577888888888877665
No 363
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=50.09 E-value=48 Score=26.87 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeEee
Q psy2348 60 PFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP 82 (131)
++.|.| ++.||+++||.|.-
T Consensus 169 ~~~q~e---l~~~~~~~gI~v~A 188 (280)
T COG0656 169 YLRQPE---LLPFCQRHGIAVEA 188 (280)
T ss_pred CCCcHH---HHHHHHHcCCEEEE
Confidence 566777 99999999999974
No 364
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=49.79 E-value=29 Score=30.19 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeecc-----CCcchHHHHhc
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLV-----PLYSDMDFVLK 95 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i-----~~~GH~~~~L~ 95 (131)
+=.|-+++||.++-+++|++|-=.| -|||||.-+|+
T Consensus 321 AqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGHMNVLLA 361 (463)
T PF02233_consen 321 AQAQHAVAELADLLEERGVEVKFAIHPVAGRMPGHMNVLLA 361 (463)
T ss_dssp CTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceEEEE
Confidence 4568899999999999999987555 59999999996
No 365
>PRK08361 aspartate aminotransferase; Provisional
Probab=49.60 E-value=22 Score=28.98 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..++.+++++|++.|+++++-||
T Consensus 179 tG~~~~~~~~~~l~~~~~~~~~~ii 203 (391)
T PRK08361 179 TGATLDKEVAKAIADIAEDYNIYIL 203 (391)
T ss_pred CCcCcCHHHHHHHHHHHHHcCeEEE
Confidence 4568999999999999999998776
No 366
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=49.58 E-value=66 Score=25.47 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=8.8
Q ss_pred cCCChhHHHHHHHH
Q psy2348 113 CPNARSSLDLVFKM 126 (131)
Q Consensus 113 cp~~~~t~~f~~~l 126 (131)
|.+|..+.+++..+
T Consensus 231 ~aGN~~~E~l~~~L 244 (275)
T cd07937 231 GTSQPSTESMVAAL 244 (275)
T ss_pred CcCChhHHHHHHHH
Confidence 56777776666543
No 367
>PRK05660 HemN family oxidoreductase; Provisional
Probab=49.57 E-value=39 Score=27.98 Aligned_cols=48 Identities=17% Similarity=0.010 Sum_probs=30.4
Q ss_pred HHHHHcCCCEEEEEeeccCCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 31 PILAYTGATSLLIEWEDTLPYSLG-F-DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 31 ~~la~~g~n~~~l~~ed~~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
..|...|+|.+.+-++.. ... . .-+...|.+++.+.++.|++.|+..|
T Consensus 111 ~~Lk~~Gv~risiGvqS~---~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v 160 (378)
T PRK05660 111 VGYQRAGVNRISIGVQSF---SEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSF 160 (378)
T ss_pred HHHHHcCCCEEEeccCcC---CHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 344445666666655432 111 0 01235899999999999999999654
No 368
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=49.29 E-value=20 Score=29.49 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
-.++..++++++++||.++--+|.++-++..---.....+-.+-..--.+-+.+++|-+.+.+++.+
T Consensus 278 i~~l~~~~~~~r~~gi~~~~~~Q~~~Ql~~~Yg~~~a~~i~~n~~~~~~~~~~d~~ta~~iS~~lG~ 344 (384)
T cd01126 278 LETFEKAIAIMAGYGIRLLLIFQSLAQLEGTYGDAGASSFLSNCGVRLFFAVNDYETARYISKLLGT 344 (384)
T ss_pred hHHHHHHHHHhcCCCCEEEEEEEcHHHHHHHhCHhHHHHHHhhCceEEEecCCCHHHHHHHHHHcCC
Confidence 4789999999999999999999999888765322111122111111124566788999999988765
No 369
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=49.25 E-value=43 Score=29.44 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.+.++.|+.+|.|.+.+-.+...+---..-++ ..|.+++.+-++.+++.|+.|.-
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inR-ght~~~v~~Ai~~lr~~G~~v~~ 260 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKR-GHTVRDVVEATRLLRDAGLKVVY 260 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeEEE
Confidence 56788999999999999887632211001123 58999999999999999997653
No 370
>KOG0257|consensus
Probab=49.13 E-value=20 Score=30.70 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 58 TNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~IevI 81 (131)
|..+|++|+.+|.+.|+++++=||
T Consensus 186 GkvfsReeLe~ia~l~~k~~~lvi 209 (420)
T KOG0257|consen 186 GKVFSREELERIAELCKKHGLLVI 209 (420)
T ss_pred CcccCHHHHHHHHHHHHHCCEEEE
Confidence 558999999999999999996665
No 371
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.83 E-value=1.1e+02 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHc----CCeEeeccCCcc
Q psy2348 61 FRETEIFIILAAAESN----GLASIPLVPLYS 88 (131)
Q Consensus 61 YT~eeikeiv~yA~~~----~IevIP~i~~~G 88 (131)
=|.+++++|.++++.. +|++||.=+.+|
T Consensus 265 Ds~e~a~~La~~l~~l~~~~~VnLIPynp~~~ 296 (348)
T PRK14467 265 DSPEDALRLAQLIGKNKKKFKVNLIPFNPDPE 296 (348)
T ss_pred CCHHHHHHHHHHHhcCCCceEEEEecCCCCCC
Confidence 3456666666666553 356666555444
No 372
>PRK06256 biotin synthase; Validated
Probab=48.83 E-value=27 Score=28.08 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH 89 (131)
.+.+..|++.|++.+.+.+|-+-.+-..+..++ |-+++.+.+..|++.||.|-.-+ ++|+
T Consensus 152 ~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~--t~~~~i~~i~~a~~~Gi~v~~~~-I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNLETSRSYFPNVVTTH--TYEDRIDTCEMVKAAGIEPCSGG-IIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCCccCHHHHhhcCCCC--CHHHHHHHHHHHHHcCCeeccCe-EEeC
No 373
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=48.46 E-value=32 Score=30.83 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhccccccc---ccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAK---MRQNFNDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~---l~e~~~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
.+.+.+.+++++.+||.++.-+|.++-++..- ..|.. +-.+-...-.+-|.+++|-+.+.+++.+
T Consensus 458 l~~l~~~la~~rgyGI~~~lI~Qsl~QL~~~y--~~YG~~~tIl~Nc~~~i~~~~nd~eTAe~iS~~LG~ 525 (636)
T PRK13880 458 LEILQESLAFVAGYGIKCYLICQDINQLKSRE--TGYGHDESITSNCHVQNAYPPNRVETAEHLSKLTGQ 525 (636)
T ss_pred hHHHHHHHHHHhhcCcEEEEEEecHHHHHHHh--cccchhhHHHhcCceeEeecCCCHHHHHHHHHHhCc
Confidence 56899999999999999999999999998853 33422 2111111234778888999999988754
No 374
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=48.27 E-value=58 Score=26.16 Aligned_cols=60 Identities=10% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCCeEeeccCCcch
Q psy2348 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES-NGLASIPLVPLYSD 89 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~-~~IevIP~i~~~GH 89 (131)
....++.+.++++++.++..|+..+.+. | |.++...++.++++++++ .|++-| .+.|-|-
T Consensus 39 ~~~~ls~eei~~~i~~~~~~gv~~V~lt--------G----GEPll~~~l~~li~~i~~~~gi~~v-~itTNG~ 99 (334)
T TIGR02666 39 KEELLTFEEIERLVRAFVGLGVRKVRLT--------G----GEPLLRKDLVELVARLAALPGIEDI-ALTTNGL 99 (334)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCCEEEEE--------C----ccccccCCHHHHHHHHHhcCCCCeE-EEEeCch
Confidence 3457899999999999999998776551 1 234445678888888777 566322 3455554
No 375
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=48.18 E-value=64 Score=27.05 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEee-ccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcC--C----eEeec-------cCC
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWE-DTLPYSLG--FDNTNPFRETEIFIILAAAESNG--L----ASIPL-------VPL 86 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~e-d~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~--I----evIP~-------i~~ 86 (131)
++.+|+.|+..+.+|+..+.+.-. ...++... ....-....+=++++.+||++.| | |-+|. ++|
T Consensus 114 i~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~~~~~ll~T 193 (382)
T TIGR02631 114 LRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEPRGDILLPT 193 (382)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCCCcceecCC
Confidence 577899999999999987755221 01111110 00011345677899999999963 4 44442 677
Q ss_pred cchHHHHhc
Q psy2348 87 YSDMDFVLK 95 (131)
Q Consensus 87 ~GH~~~~L~ 95 (131)
.+|+..+++
T Consensus 194 ~~~al~li~ 202 (382)
T TIGR02631 194 VGHALAFIE 202 (382)
T ss_pred HHHHHHHHH
Confidence 777777664
No 376
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.17 E-value=1.4e+02 Score=24.85 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=43.7
Q ss_pred CCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH--cCCeE
Q psy2348 3 TPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES--NGLAS 80 (131)
Q Consensus 3 D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~--~~Iev 80 (131)
|+|+=+.|.-..-+.+.+ +++.+.+.++.++.-.-..+.+++= . .+| =-=|.|+++++.++++. .++++
T Consensus 219 hA~~~e~R~~l~Pi~~~~-~le~ll~al~~~~~~~~r~v~ieyv--L-I~G-----vNDs~eda~~L~~ll~~l~~kVnL 289 (342)
T PRK14465 219 NHPDPNGRLQIMDIEEKF-PLEELLQAAKDFTRELKRRITFEYV--M-IPG-----VNMGRENANKLVKIARSLDCKINV 289 (342)
T ss_pred cCCChhhcceEeeccccC-CHHHHHHHHHHHHHHcCCEEEEEEE--E-ECC-----ccCCHHHHHHHHHHHhhCCCcEEE
Confidence 345555555555555444 4566666666544322234444431 1 122 23678999999999998 67888
Q ss_pred eeccC
Q psy2348 81 IPLVP 85 (131)
Q Consensus 81 IP~i~ 85 (131)
||.=.
T Consensus 290 IPyN~ 294 (342)
T PRK14465 290 IPLNT 294 (342)
T ss_pred EccCC
Confidence 88765
No 377
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=48.00 E-value=50 Score=27.31 Aligned_cols=61 Identities=5% Similarity=-0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCEEEEEeeccCCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCeEee--ccCCcchHH
Q psy2348 28 EILPILAYTGATSLLIEWEDTLPYSLG-F-DNTNPFRETEIFIILAAAESNGLASIP--LVPLYSDMD 91 (131)
Q Consensus 28 ~~i~~la~~g~n~~~l~~ed~~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~IevIP--~i~~~GH~~ 91 (131)
+.+..|+..|+|.+.+..+. +..+ + .-+-.+|.+++.+.++.|++.++.|-- -.-.||-+.
T Consensus 105 e~L~~l~~~GvnrislGvQS---~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~ 169 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGVQA---LNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTL 169 (380)
T ss_pred HHHHHHHHcCCCEEEEeccc---CCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCH
Confidence 45555666788887777764 2222 1 112368999999999999988765543 334566553
No 378
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=47.94 E-value=49 Score=25.60 Aligned_cols=57 Identities=9% Similarity=0.014 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
++.+.+.+.+..++..|...+. +.+|.++-+.++.+|+++++++|+.+ .++|=|...
T Consensus 56 ~s~~ei~~~i~~~~~~~~~~V~------------lTGGEPll~~~l~~li~~l~~~g~~v--~leTNGtl~ 112 (238)
T TIGR03365 56 MTAEEVWQELKALGGGTPLHVS------------LSGGNPALQKPLGELIDLGKAKGYRF--ALETQGSVW 112 (238)
T ss_pred CCHHHHHHHHHHHhCCCCCeEE------------EeCCchhhhHhHHHHHHHHHHCCCCE--EEECCCCCc
Confidence 6777777777666543333322 22456777789999999999999986 788888763
No 379
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=47.93 E-value=65 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeEe-eccCC-cchHH
Q psy2348 60 PFRETEIFIILAAAESNGLASI-PLVPL-YSDMD 91 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevI-P~i~~-~GH~~ 91 (131)
.++.+.+++|.+.|+++|+-+| =|+++ +|...
T Consensus 192 ~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g 225 (389)
T PRK01278 192 PAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTG 225 (389)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC
Confidence 7899999999999999999665 56666 55543
No 380
>PRK14017 galactonate dehydratase; Provisional
Probab=47.61 E-value=1e+02 Score=25.37 Aligned_cols=69 Identities=17% Similarity=0.026 Sum_probs=46.0
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCC------------------C-C----------CC----
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSL------------------G-F----------DN---- 57 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~------------------~-~----------~~---- 57 (131)
.+|+|. +.-.+.+.-.++++.|+.+++. .+|+.+|... + + ..
T Consensus 179 ~l~vDa-N~~w~~~~A~~~~~~l~~~~~~----~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d 253 (382)
T PRK14017 179 GIGVDF-HGRVHKPMAKVLAKELEPYRPM----FIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVD 253 (382)
T ss_pred eEEEEC-CCCCCHHHHHHHHHhhcccCCC----eEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCC
Confidence 488898 4567888899999999887753 3343332111 0 0 00
Q ss_pred ------CCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 58 ------TNPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 58 ------~~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
...=...+.+++.+.|+++||.++|--
T Consensus 254 ~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~ 286 (382)
T PRK14017 254 IIQPDLSHAGGITECRKIAAMAEAYDVALAPHC 286 (382)
T ss_pred eEecCccccCCHHHHHHHHHHHHHcCCeEeecC
Confidence 001235788899999999999999973
No 381
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=47.50 E-value=13 Score=31.07 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=17.2
Q ss_pred HHcCCeEee-------------ccCCcchHHHH
Q psy2348 74 ESNGLASIP-------------LVPLYSDMDFV 93 (131)
Q Consensus 74 ~~~~IevIP-------------~i~~~GH~~~~ 93 (131)
++|||+|=+ -+|+|||..++
T Consensus 57 k~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 57 KARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred hhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 678998866 48999999998
No 382
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=47.24 E-value=89 Score=24.79 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
-+++++.++++.+..+|+.. +.+.||. |..|.+++.+++...+++
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~--i~l~DT~---------G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 146 VPPERVAEVAERLLDLGCDE--ISLGDTI---------GVATPAQVRRLLEAVLER 190 (274)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEECCCC---------CccCHHHHHHHHHHHHHH
Confidence 48999999999999999875 6667754 688999999999999876
No 383
>TIGR00086 smpB SsrA-binding protein. This model describes the SsrA-binding protein, also called tmRNA binding protein, small protein B, and SmpB. The small, stable RNA SsrA (also called tmRNA or 10Sa RNA) recognizes stalled ribosomes such as occur during translation from message that lacks a stop codon. It becomes charged with Ala like a tRNA, then acts as mRNA to resume translation started with the defective mRNA. The short C-terminal peptide tag added by the SsrA system marks the abortively translated protein for degradation. SmpB binds SsrA after its aminoacylation but before the coupling of the Ala to the nascent polypeptide chain and is an essential part of the SsrA peptide tagging system. SmpB has been associated with the survival of bacterial pathogens in conditions of stress. It is universal in the first 100 sequenced bacterial genomes.
Probab=47.20 E-value=21 Score=26.28 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 60 PFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
-+.+.||..|.....+.|.||||.
T Consensus 78 LLhk~EI~kL~~~~~~kG~TiVPl 101 (144)
T TIGR00086 78 LLHKKEIDKLQGKVKEKGLTLVPL 101 (144)
T ss_pred CcCHHHHHHHHHHHhcCCeEEEee
Confidence 488999999999999999999996
No 384
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=46.84 E-value=23 Score=29.98 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=27.8
Q ss_pred CEEEEEeeccC---CCCCCCCCCC---CCCHHHHHHHHHHHH--HcCCeEeeccC
Q psy2348 39 TSLLIEWEDTL---PYSLGFDNTN---PFRETEIFIILAAAE--SNGLASIPLVP 85 (131)
Q Consensus 39 n~~~l~~ed~~---p~~~~~~~~~---~YT~eeikeiv~yA~--~~~IevIP~i~ 85 (131)
+-+=+|+|..| .++| ..+.. .-+.+|++++.+-|+ -.-|++=||.+
T Consensus 120 ~ilGiHLEGP~ls~~kkG-Ah~~~~ir~~~~~~~~~~~~~a~g~i~~vTlAPE~~ 173 (380)
T COG1820 120 QILGIHLEGPFLSPEKKG-AHNPEYIRPPDPEELEQLIAAADGLIKLVTLAPELD 173 (380)
T ss_pred ceEEEEeecCccCHhhcc-CCCHHHhCCCCHHHHHHHHhhccCceEEEEECCCCC
Confidence 33457888743 1222 22221 457777777777776 44488889988
No 385
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=46.80 E-value=13 Score=32.80 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=24.9
Q ss_pred CCCCCHHHHH----HHHHHHHHcCCeE------------------eeccCCcchHHHH
Q psy2348 58 TNPFRETEIF----IILAAAESNGLAS------------------IPLVPLYSDMDFV 93 (131)
Q Consensus 58 ~~~YT~eeik----eiv~yA~~~~Iev------------------IP~i~~~GH~~~~ 93 (131)
.|..++-|++ +=.+.-++||||| .=+||||||..+.
T Consensus 33 t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 33 TGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred hcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 3455555544 3446778899986 4579999998765
No 386
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=46.64 E-value=1.1e+02 Score=22.28 Aligned_cols=53 Identities=17% Similarity=-0.040 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe---eccCCcchHHHHhc
Q psy2348 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI---PLVPLYSDMDFVLK 95 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI---P~i~~~GH~~~~L~ 95 (131)
+++.+++.|++.+.++.+. +.+++++++++|+++|+.++ |...|+-....+++
T Consensus 69 ~~~~~~~aGad~i~~h~~~--------------~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~ 124 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAA--------------PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK 124 (202)
T ss_pred HHHHHHhcCCCEEEEEeeC--------------CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH
Confidence 4466666777766665431 23678899999999999997 77778777766554
No 387
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=46.55 E-value=1.1e+02 Score=25.08 Aligned_cols=69 Identities=4% Similarity=-0.009 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHcCC-CEEEEEeeccCC-----------CCCCCCCCCCCCHH----HHHHHHHHHHHcCCeEeec
Q psy2348 20 PPSLTYLKEILPILAYTGA-TSLLIEWEDTLP-----------YSLGFDNTNPFRET----EIFIILAAAESNGLASIPL 83 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~-n~~~l~~ed~~p-----------~~~~~~~~~~YT~e----eikeiv~yA~~~~IevIP~ 83 (131)
+...+.+..++..+++--- --+-+++.+..- |.+-+-++..++-| .-|++++||..+|+.|=-|
T Consensus 55 ~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaE 134 (307)
T PRK05835 55 YMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAE 134 (307)
T ss_pred hCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3455556666666655332 245566554321 22212234455444 4789999999999999888
Q ss_pred cCCcc
Q psy2348 84 VPLYS 88 (131)
Q Consensus 84 i~~~G 88 (131)
+=..|
T Consensus 135 lG~vg 139 (307)
T PRK05835 135 LGRLM 139 (307)
T ss_pred ecccC
Confidence 75553
No 388
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=46.53 E-value=70 Score=25.16 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 61 FRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
-|-++|..=++.|.+.|+++|=||.-.-
T Consensus 101 Et~~~i~~Kv~~a~~~gl~pIvCiGE~~ 128 (242)
T cd00311 101 ETDEDVAKKVKAALEAGLTPILCVGETL 128 (242)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 6999999999999999999999998754
No 389
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=46.47 E-value=22 Score=27.36 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccC----------CCCCC-CCCCCCCCHHHHH-----------------HHHHHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTL----------PYSLG-FDNTNPFRETEIF-----------------IILAAA 73 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~----------p~~~~-~~~~~~YT~eeik-----------------eiv~yA 73 (131)
+.+...++.+.|..-|+..+.+-|...- .|+.- +.-|.-+|.++.+ +++++|
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~~ 97 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKHA 97 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 6778888889999999988776653211 12211 2334466777664 578899
Q ss_pred HHcCCeEeeccCCcchHHHHhcc
Q psy2348 74 ESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 74 ~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
++++|-++|=+-||.....++.+
T Consensus 98 ~~~~i~~iPG~~TptEi~~A~~~ 120 (204)
T TIGR01182 98 QDHGIPIIPGVATPSEIMLALEL 120 (204)
T ss_pred HHcCCcEECCCCCHHHHHHHHHC
Confidence 99999999999999999999764
No 390
>PRK13840 sucrose phosphorylase; Provisional
Probab=46.43 E-value=62 Score=28.32 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=48.8
Q ss_pred EeecC-CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCC----CCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 13 HLDLK-GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTN----PFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 13 mlD~~-~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~----~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
+.|+- +.+--.+++++.+..+...|+.+++| |..+|--+-.+.+ .-|-+=++++-+.++..+.++|+|+..
T Consensus 161 QpDLN~~NP~V~~~i~~il~fwl~~GVDgfRL---DAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~~ 236 (495)
T PRK13840 161 QIDIDVHSAAGWEYLMSILDRFAASHVTLIRL---DAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEIHS 236 (495)
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHCCCCEEEE---echhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCcc
Confidence 67773 56666789999999999999999999 5544421100001 234455667777788889999998854
No 391
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=46.42 E-value=1.3e+02 Score=25.52 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~ 92 (131)
..-+.++.|.+.+... +... ++.-.+|.++ .|..||.+.-++|++.|+++++.|| |=|..|.+.+
T Consensus 210 ~~G~~~e~le~~~~~~---~~k~--~y~~P~~qNP----tG~tms~~rR~~Ll~lA~~~~~~II-EDD~y~el~~ 274 (459)
T COG1167 210 EDGIDPEALEEALAQW---KPKA--VYVTPTFQNP----TGVTMSLERRKALLALAEKYDVLII-EDDYYGELRY 274 (459)
T ss_pred CCCCCHHHHHHHHhhc---CCcE--EEECCCCCCC----CCCccCHHHHHHHHHHHHHcCCeEE-eeCcchhhhc
Confidence 5566677666655443 4433 3444444333 4578999999999999999999998 4455555443
No 392
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=46.40 E-value=62 Score=26.22 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=43.2
Q ss_pred eecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-ec
Q psy2348 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-PL 83 (131)
Q Consensus 14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI-P~ 83 (131)
.|++==..+.+.+.+.++.++..|+...++.-+. +..++-++|++.|++.|+.|| |.
T Consensus 66 ~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~G-------------f~~~~~~~l~~~a~~~girvlGPN 123 (291)
T PRK05678 66 ANASVIYVPPPFAADAILEAIDAGIDLIVCITEG-------------IPVLDMLEVKAYLERKKTRLIGPN 123 (291)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCC-------------CCHHHHHHHHHHHHHcCCEEECCC
Confidence 5665445667788888999999999887774432 135556899999999999999 64
No 393
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=46.25 E-value=56 Score=22.24 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCC---CHHHHHHHHHHHHHcCC-eEe
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPF---RETEIFIILAAAESNGL-ASI 81 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~Y---T~eeikeiv~yA~~~~I-evI 81 (131)
...++.+.++++++.+...+..++.+ .| |.++ ..+++.+++.++++++. .++
T Consensus 33 ~~~~~~~~~~~ii~~~~~~~~~~i~l--------~G----GEPll~~~~~~l~~i~~~~k~~~~~~~~ 88 (139)
T PF13353_consen 33 GKELSEEIIEEIIEELKNYGIKGIVL--------TG----GEPLLHENYDELLEILKYIKEKFPKKII 88 (139)
T ss_dssp SEEC-HHHHHHHCHHHCCCCCCEEEE--------EC----STGGGHHSHHHHHHHHHHHHHTT-SEEE
T ss_pred cccccchhhhhhhhHHhcCCceEEEE--------cC----CCeeeeccHhHHHHHHHHHHHhCCCCeE
Confidence 33456889999999998888766554 11 2233 47999999999999999 444
No 394
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=46.24 E-value=76 Score=27.68 Aligned_cols=56 Identities=18% Similarity=0.295 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHcC---CCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 20 PPSLTYLKEILPILAYTG---ATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g---~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
=|+.+.++++++.|..-+ .|.+++ .| |.+-=.+|+-+|+..|+++|.+=|- ++|=|
T Consensus 90 Ept~eqi~~Ml~~lk~e~p~~~~aIq~--------tG----GEPTvr~DL~eiv~~a~e~g~~hVq-inTnG 148 (475)
T COG1964 90 EPTLEQIREMLRNLKKEHPVGANAVQF--------TG----GEPTLRDDLIEIIKIAREEGYDHVQ-LNTNG 148 (475)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCceeEe--------cC----CCccchhhHHHHHHHHhhcCccEEE-EccCc
Confidence 478999999999998764 366554 22 2344469999999999999996553 34443
No 395
>PRK08185 hypothetical protein; Provisional
Probab=46.23 E-value=1.1e+02 Score=24.68 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
.+.-++++++|..+|+.|==|+ ||..
T Consensus 108 i~~t~~vv~~a~~~gv~vE~El---G~vg 133 (283)
T PRK08185 108 VALTKEVVELAHKVGVSVEGEL---GTIG 133 (283)
T ss_pred HHHHHHHHHHHHHcCCeEEEEE---eecc
Confidence 3457899999999999995555 7753
No 396
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=46.10 E-value=68 Score=26.85 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 62 RETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 62 T~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
..+.-|++++||..+|+.|=-|+=..
T Consensus 119 NI~~Tkevve~Ah~~GvsVEaELG~i 144 (347)
T TIGR01521 119 NVRVTAEVVAFAHAVGASVEGELGCL 144 (347)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeeec
Confidence 45567999999999999997776444
No 397
>PRK08363 alanine aminotransferase; Validated
Probab=45.70 E-value=28 Score=28.44 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..+|.+++++|++.|+++++-||
T Consensus 179 tG~~~~~~~~~~l~~~a~~~~~~li 203 (398)
T PRK08363 179 TGALYEKKTLKEILDIAGEHDLPVI 203 (398)
T ss_pred CCcCcCHHHHHHHHHHHHHcCeEEE
Confidence 3567899999999999999998766
No 398
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=45.56 E-value=30 Score=28.34 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=26.7
Q ss_pred CCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 49 LPYSLG-F-DNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 49 ~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
|+|+|- + .+++++|.+.||++++..+..++.+.=
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lh 36 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLH 36 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEE
Confidence 456665 1 135799999999999999999998764
No 399
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=45.45 E-value=1.1e+02 Score=25.54 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=41.4
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHH-------HHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPIL-------AYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~l-------a~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
-++|||=+...- .+|+..+++.+ -..|++++++--. ..||+. ..+.-|+++++|..+|+.|=-
T Consensus 90 ValHLDHg~~~~-~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS-~lp~eE--------NI~~TkevVe~Ah~~gvsVEa 159 (345)
T cd00946 90 VVLHTDHCAKKL-LPWFDGLLEADEEYFKQHGEPLFSSHMLDLS-EEPLEE--------NIEICKKYLERMAKINMWLEM 159 (345)
T ss_pred EEEECCCCCCcc-chhhHHHHHHHHHHHHHhccCCCceEEeeCC-CCCHHH--------HHHHHHHHHHHHHHcCCEEEE
Confidence 467888754321 13444433332 2568888877332 234432 133479999999999999988
Q ss_pred ccCCc
Q psy2348 83 LVPLY 87 (131)
Q Consensus 83 ~i~~~ 87 (131)
|+=..
T Consensus 160 ElG~i 164 (345)
T cd00946 160 EIGIT 164 (345)
T ss_pred Eeccc
Confidence 86444
No 400
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=45.18 E-value=9 Score=25.03 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 61 FRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
-+.+++.++.+.++++|+++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~~~~ 106 (126)
T cd08346 82 PSEASLDAWRERLRAAGVPVSGVVD 106 (126)
T ss_pred CCHHHHHHHHHHHHHcCCcccceEe
Confidence 3456999999999999999876443
No 401
>KOG0471|consensus
Probab=45.14 E-value=44 Score=29.39 Aligned_cols=70 Identities=13% Similarity=0.001 Sum_probs=49.0
Q ss_pred eecCCCCCCHHHHHHHHHHHHHcCCCEEEEE-e-eccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIE-W-EDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~-~-ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
.+=...+-....+.+=+|.++.+|++.+++- + +..-++-|+ .-+..+=|.||.++++.-+.++||-+|=-
T Consensus 30 ~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D 107 (545)
T KOG0471|consen 30 DSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIAD 107 (545)
T ss_pred cccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEe
Confidence 3333444567778899999999999988761 1 111123333 12355779999999999999999988743
No 402
>PLN02672 methionine S-methyltransferase
Probab=45.11 E-value=26 Score=33.60 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
.|..||.+++++|++.|+++++.||
T Consensus 842 TG~v~S~eeLe~Llela~k~di~VI 866 (1082)
T PLN02672 842 TGLLYSNSEIEEILSVCAKYGARVI 866 (1082)
T ss_pred cCccCCHHHHHHHHHHHHHcCCEEE
Confidence 3458999999999999999999877
No 403
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=45.10 E-value=80 Score=25.90 Aligned_cols=26 Identities=8% Similarity=-0.112 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHcCCeEe-eccCC
Q psy2348 61 FRETEIFIILAAAESNGLASI-PLVPL 86 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevI-P~i~~ 86 (131)
.|.+.+++|.+.|+++|+-+| =|+.+
T Consensus 202 ~~~~~l~~l~~l~~~~g~~lI~DEv~~ 228 (403)
T PRK05093 202 ATPEFLQGLRELCDQHNALLIFDEVQT 228 (403)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 499999999999999999887 55554
No 404
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=45.01 E-value=69 Score=27.26 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=44.5
Q ss_pred eecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-eccCCcc
Q psy2348 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-PLVPLYS 88 (131)
Q Consensus 14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI-P~i~~~G 88 (131)
.|++-=+.+.+.+...++.+...|+..+++..+. |+-.| .. ..+.-++++++|++.||.|+ | +++|
T Consensus 65 ~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi~s~g-f~e~g---~~---g~~~~~~l~~~a~~~girvlGP--nc~G 131 (447)
T TIGR02717 65 VDLAVIVVPAKYVPQVVEECGEKGVKGAVVITAG-FKEVG---EE---GAELEQELVEIARKYGMRLLGP--NCLG 131 (447)
T ss_pred CCEEEEecCHHHHHHHHHHHHhcCCCEEEEECCC-ccccC---cc---hHHHHHHHHHHHHHcCCEEEec--Ceee
Confidence 4665555667888999999999999988774432 21111 11 12233789999999999988 5 4444
No 405
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=44.74 E-value=30 Score=22.86 Aligned_cols=32 Identities=16% Similarity=-0.085 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
.-|.+++.++.+.+++.|+++.+....+|+..
T Consensus 70 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~ 101 (121)
T cd09013 70 ASSPEALERRVAALEASGLGIGWIEGDPGHGK 101 (121)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccCCCCCcc
Confidence 35789999999999999999865555566544
No 406
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=44.70 E-value=72 Score=25.26 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
.+.++.+-++|++.||.++=++--+.|.+.+..+
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~ 108 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY 108 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh
Confidence 8999999999999999999999999999999654
No 407
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=44.66 E-value=43 Score=26.72 Aligned_cols=14 Identities=7% Similarity=0.366 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHH
Q psy2348 21 PSLTYLKEILPILA 34 (131)
Q Consensus 21 ~~~~~lk~~i~~la 34 (131)
+++.+++.+++-.+
T Consensus 28 ~~p~f~~D~~~vag 41 (258)
T COG1809 28 LGPRFVEDVLKVAG 41 (258)
T ss_pred CChHHHHHHHHhhh
Confidence 33444555544443
No 408
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=44.58 E-value=1e+02 Score=22.26 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
+..++.+.+.+.|+.+... +.++. +.+|. +-.+++.+++++++++|+.+ .++| |++
T Consensus 43 g~~lt~eel~~~I~~~~~~-~~gVt------------~SGGE-l~~~~l~~ll~~lk~~Gl~i--~l~T-g~~ 98 (147)
T TIGR02826 43 GTKLTPEYLTKTLDKYRSL-ISCVL------------FLGGE-WNREALLSLLKIFKEKGLKT--CLYT-GLE 98 (147)
T ss_pred CcCCCHHHHHHHHHHhCCC-CCEEE------------Eechh-cCHHHHHHHHHHHHHCCCCE--EEEC-CCC
Confidence 5568888888887775411 22222 22344 77788999999999999987 4677 543
No 409
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=44.57 E-value=22 Score=27.11 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 58 TNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~IevI 81 (131)
..++|.+|++++.+|+.-.++.|+
T Consensus 140 ~~YLT~eEl~el~e~i~~~~i~VL 163 (188)
T PF09711_consen 140 RSYLTEEELQELYEYIKYNKIKVL 163 (188)
T ss_dssp GGGS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHhcCHHHHHHHHHHHHHhCCeEE
Confidence 469999999999999999999987
No 410
>PRK09936 hypothetical protein; Provisional
Probab=44.56 E-value=1.5e+02 Score=24.29 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=49.6
Q ss_pred CCceeEEeec--CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 7 FKEVLVHLDL--KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 7 f~~Rg~mlD~--~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
++.-|.-+=- +..=.+.+.=.+++..++..|++++++.|.. | |+-. -.-++--+..+++.|++.||+|+=
T Consensus 19 ~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~---y-G~~~--fg~~~g~La~~l~~A~~~Gl~v~v 90 (296)
T PRK09936 19 QAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTR---Y-GDAD--FGGQRGWLAKRLAAAQQAGLKLVV 90 (296)
T ss_pred hccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeee---c-cCCC--cccchHHHHHHHHHHHHcCCEEEE
Confidence 3444444443 3336677888999999999999999999963 3 2210 012267789999999999999973
No 411
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=44.56 E-value=25 Score=31.40 Aligned_cols=67 Identities=7% Similarity=0.044 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
.+++.+.+++++.+||.++.-+|..+-++.+-.-.....+..+-...-.+-+.+.+|-+.+.+++.+
T Consensus 421 ip~l~~~ls~~RgyGi~~~~I~QsisQL~~~YG~~~a~tIl~Nc~~~i~~~~~d~~TAe~iS~~LG~ 487 (606)
T PRK13897 421 MEQFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQLVGN 487 (606)
T ss_pred hHHHHHHHHHhCcCCCEEEEEEEcHHHHHHHhCHhHHHHHHhcCceEEEEecCCHHHHHHHHHHhCC
Confidence 5689999999999999999999999999875221111112111112235777888899999888754
No 412
>PRK14863 bifunctional regulator KidO; Provisional
Probab=44.52 E-value=35 Score=27.16 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh
Q psy2348 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL 94 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L 94 (131)
+..+.+|..++++.|-+.||+.|--=+..|++|.++
T Consensus 27 ~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~l 62 (292)
T PRK14863 27 GRTPEAEARDILNIAARAGLSVLDASGLFGRAETVL 62 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHH
Confidence 356899999999999999999999888999988876
No 413
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=44.52 E-value=57 Score=27.74 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=27.9
Q ss_pred EEEEEee---ccCCCCCC-------CCCCCCCCHHHHHHHHHHHHHcCC
Q psy2348 40 SLLIEWE---DTLPYSLG-------FDNTNPFRETEIFIILAAAESNGL 78 (131)
Q Consensus 40 ~~~l~~e---d~~p~~~~-------~~~~~~YT~eeikeiv~yA~~~~I 78 (131)
+++-.+. +.||--.+ .++|.+||-++++.|.+.|+++|.
T Consensus 63 GVigr~~~~~~~~p~~~~~~tvRv~~P~G~~~tteqLR~LaDiaekYGs 111 (402)
T TIGR02064 63 GVIGRYSDQGEKFPGVAEFHTVRVAQPSGKFYSTDYLRQLCDVWEKYGS 111 (402)
T ss_pred EEEEEecCCcccCCCcCeEEEEEEecCCCCCCCHHHHHHHHHHHHHhCC
Confidence 3444444 45665444 445667999999999999999984
No 414
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=44.49 E-value=28 Score=24.37 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS 80 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Iev 80 (131)
-...++++.+.+.+.+++.+.+-+ | .-+.++++++++.|++.|++|
T Consensus 126 ~lg~~~~l~~~~~~~~id~v~ial----~---------~~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 126 VLGDLDDLPELVREHDIDEVIIAL----P---------WSEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp EE--GGGHHHHHHHHT--EEEE------T---------TS-HHHHHHHHHHHHTTT-EE
T ss_pred eEcCHHHHHHHHHhCCCCEEEEEc----C---------ccCHHHHHHHHHHHHhCCCEE
Confidence 344566677777777777666632 1 234789999999999999986
No 415
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=44.33 E-value=45 Score=28.29 Aligned_cols=64 Identities=20% Similarity=0.141 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee--cc-CCcchHHHH
Q psy2348 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP--LV-PLYSDMDFV 93 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP--~i-~~~GH~~~~ 93 (131)
.++.|+..|+|.+.+-++..-+-.-..- +...|.+++.+.++.+++.|++.|. .| -.||.+..-
T Consensus 153 ~l~~lk~~G~~risiGvqS~~~~~l~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~ 219 (455)
T TIGR00538 153 VIDALRDEGFNRLSFGVQDFNKEVQQAV-NRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKES 219 (455)
T ss_pred HHHHHHHcCCCEEEEcCCCCCHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHH
Confidence 3344444555555555543111000011 2357899999999999999986221 11 345555443
No 416
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=44.32 E-value=25 Score=29.97 Aligned_cols=31 Identities=16% Similarity=-0.032 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~ 92 (131)
+=|.+||.+++++|+++++.|.|- --||+-.
T Consensus 21 P~s~eev~~iv~~A~~~~~~v~v~--G~GhS~s 51 (438)
T TIGR01678 21 PTSVEEVREVLALAREQKKKVKVV--GGGHSPS 51 (438)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEE--CCCCCCC
Confidence 458999999999999999998874 4477743
No 417
>PRK09989 hypothetical protein; Provisional
Probab=44.29 E-value=84 Score=24.09 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+.+.++.++++|+.++.+-. + ..++.+|++++ .+++||+|.
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~----~--------~~~~~~~~~~~---l~~~Gl~v~ 57 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLF----P--------YDYSTLQIQKQ---LEQNHLTLA 57 (258)
T ss_pred HHHHHHHHHHcCCCEEEECC----c--------ccCCHHHHHHH---HHHcCCcEE
Confidence 67899999999999977621 1 12555655554 679999876
No 418
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=44.23 E-value=58 Score=25.24 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=57.0
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec-cC-CCCCCCCCCCCCCHHHHHH-HHHHHHHcCCeEeeccCCcc
Q psy2348 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWED-TL-PYSLGFDNTNPFRETEIFI-ILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 12 ~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed-~~-p~~~~~~~~~~YT~eeike-iv~yA~~~~IevIP~i~~~G 88 (131)
..+++.=+.++.+.+..++..++++|++.++.-..+ +. .+++ + ..-..+.++. +.+-|++-+-..+|+|..+-
T Consensus 76 ~~i~l~~al~K~~~~d~il~katELGv~~i~p~~s~rs~~~~~~---~-~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~~~ 151 (240)
T TIGR00046 76 LKIHLAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDI---E-AIKKLERWQKIAIEAAEQSGRNIVPEIKPPK 151 (240)
T ss_pred cEEEEEEeecCCccHHHHHHHHHHcCCCEEEEEEeccceeccCc---h-HHHHHHHHHHHHHHHHHhcCCCCCCEECCcC
Confidence 346777778888999999999999999998764432 21 0111 0 0112344555 56677888899999999999
Q ss_pred hHHHHhcc
Q psy2348 89 DMDFVLKV 96 (131)
Q Consensus 89 H~~~~L~~ 96 (131)
-+..+++.
T Consensus 152 ~l~~~l~~ 159 (240)
T TIGR00046 152 NLKEKCAE 159 (240)
T ss_pred CHHHHHhh
Confidence 99888863
No 419
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=44.16 E-value=42 Score=23.74 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcC-CeE
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNG-LAS 80 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~-Iev 80 (131)
.+.++.|+..|..++.+-++..-+-... +..+..+ +++.+-+..+++.| +.|
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~g~~~v 153 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTV--EDVLEAVEKLREAGPIKV 153 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCH--HHHHHHHHHHHHhCCcce
No 420
>PRK10736 hypothetical protein; Provisional
Probab=43.90 E-value=53 Score=27.69 Aligned_cols=71 Identities=14% Similarity=-0.017 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCC--------------CCCC-------------CCCCCCCCHHHHHHHHHHHHH
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLP--------------YSLG-------------FDNTNPFRETEIFIILAAAES 75 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p--------------~~~~-------------~~~~~~YT~eeikeiv~yA~~ 75 (131)
.+.+++.+..+...|.+-+ ...++.|| |.|. -|....|..+-.+.++...++
T Consensus 57 ~~~~~~~~~~~~~~~i~~i-~~~d~~YP~~L~~i~dpP~vLf~~G~~~~l~~~~iaiVGsR~~s~yg~~~~~~l~~~la~ 135 (374)
T PRK10736 57 RKSLESTLRWLEQPNHHLL-TADSEFYPPQLLAIADYPGALFVSGELAALHSPQLAVVGSRAHSWYGERWGRLFCEELAK 135 (374)
T ss_pred HHHHHHHHHHHHhcCCEEE-ccCchhchHHHhhCCCCCeEEEEeCCHHHccCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 4456677777777776533 23333343 3344 234468999999999999999
Q ss_pred cCCeEee----ccCCcchHHHHh
Q psy2348 76 NGLASIP----LVPLYSDMDFVL 94 (131)
Q Consensus 76 ~~IevIP----~i~~~GH~~~~L 94 (131)
.|+.||- -||+-+|..++-
T Consensus 136 ~g~~IVSGlA~GiD~~AH~~aL~ 158 (374)
T PRK10736 136 NGLTITSGLARGIDGVAHRAALQ 158 (374)
T ss_pred CCCEEECcchhhHHHHHHHHHHH
Confidence 9999999 899999998664
No 421
>PRK13404 dihydropyrimidinase; Provisional
Probab=43.85 E-value=1.2e+02 Score=25.92 Aligned_cols=50 Identities=28% Similarity=0.330 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
+.+.+-++.+++.|+.++-++.. +.+ ..++.+++++++++|+++|..|+-
T Consensus 135 ~~~~~~v~~l~~~G~~~iKi~~~----~~~-----~~~~~~~l~~~~~~a~~~g~~V~~ 184 (477)
T PRK13404 135 EVLTEELPALIAQGYTSFKVFMT----YDD-----LKLDDRQILDVLAVARRHGAMVMV 184 (477)
T ss_pred hhHHHHHHHHHHcCCCEEEEEec----CCC-----CCCCHHHHHHHHHHHHhcCCEEEE
Confidence 44545677788889988877652 111 367889999999999999988763
No 422
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=43.82 E-value=31 Score=28.13 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
.+.++++..+..+|+.|+.+-+|...+ +..+.+.+++.++|.++..-+ +|..
T Consensus 86 ~~A~kLi~ia~~yGFDGw~iN~E~~~~--------~~~~~~~l~~F~~~l~~~~~~-~~~~ 137 (311)
T PF03644_consen 86 PYADKLIEIAKYYGFDGWLINIETPLS--------GPEDAENLIDFLKYLRKEAHE-NPGS 137 (311)
T ss_dssp HHHHHHHHHHHHHT--EEEEEEEESST--------TGGGHHHHHHHHHHHHHHHHH-T-T-
T ss_pred HHHHHHHHHHHHcCCCceEEEecccCC--------chhHHHHHHHHHHHHHHHhhc-CCCc
Confidence 457899999999999999999996431 127889999999999988777 6554
No 423
>PRK07094 biotin synthase; Provisional
Probab=43.80 E-value=44 Score=26.66 Aligned_cols=24 Identities=8% Similarity=-0.122 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 60 PFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
..|.+++.+.++.|++.||.+..-
T Consensus 161 ~~s~~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 161 GMSFENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred CCCHHHHHHHHHHHHHcCCeecce
Confidence 578899999999999999986554
No 424
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=43.77 E-value=1.5e+02 Score=24.47 Aligned_cols=93 Identities=11% Similarity=-0.045 Sum_probs=52.4
Q ss_pred eEEeecCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 11 LVHLDLKGAPP--SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 11 g~mlD~~~~~~--~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
|.+|=.+|..+ +.+.+++.++.|..++++.+.. -||.=|..-...|.+++++++.. ||-|=.|
T Consensus 64 Gs~LgtsR~~~~~~~~~~~~~~~~l~~~~I~~Lv~-------------IGGd~s~~~a~~L~e~~~~~~~~-i~vigiP- 128 (338)
T cd00363 64 GTIIGSARCKEFRTEEGRAKAAENLKKHGIDALVV-------------IGGDGSYTGADLLTEEWPSKYQG-FNVIGLP- 128 (338)
T ss_pred CeecccCCCCccCCHHHHHHHHHHHHHhCCCEEEE-------------eCCHHHHHHHHHHHHHHHhcCCC-ccEEEee-
Confidence 34444444333 5666777788888888777654 12444666667777777776543 2222221
Q ss_pred hHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 89 DMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 89 H~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
..-++.......|++-+.+.+++.+.++++
T Consensus 129 ------------kTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 129 ------------GTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred ------------ecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 112222223445777777777777776665
No 425
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=43.75 E-value=32 Score=28.83 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
.+.+.++++.++++|+.++--.|+++-++..........+..+-...-.+...++++-+.+.+++.+
T Consensus 285 ~~~l~~~l~~~R~~G~~~~~~~Qs~~Ql~~~yg~~~a~~i~~n~~~~i~~~~~d~~ta~~~s~~lG~ 351 (410)
T cd01127 285 LPDLVDALAEGRKFGGCFVLGIQSYAQLEDIYGKKGAQTLASNLRTRIVLAAPDAKTAEHASDSLGE 351 (410)
T ss_pred chHHHHHHHHHhcCCCEEEEEEcCHHHHHHHHCHHHHHHHHhhcCcEEEEeCCCHHHHHHHHHhcCC
Confidence 4579999999999999999999999988876542222222222111123455788888888887654
No 426
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=43.38 E-value=1.9e+02 Score=23.89 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=36.3
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeEe
Q psy2348 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN-GLASI 81 (131)
Q Consensus 12 ~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~-~IevI 81 (131)
+.+++...-+.++.|.+.++. +...+ ++- |... -+.|..+|.++.++|++.|+++ ++-||
T Consensus 190 ~~v~~~~~g~~~~~l~~~~~~----~~k~i--~~~---p~p~-NPTG~~~s~~~~~~l~~la~~~~~~~ii 250 (431)
T PRK15481 190 SPVSVDAEGMQPEKLERALAQ----GARAV--ILT---PRAH-NPTGCSLSARRAAALRNLLARYPQVLVI 250 (431)
T ss_pred EeeccCCCCCCHHHHHHHHhc----CCCEE--EEC---CCCC-CCCCccCCHHHHHHHHHHHHhcCCceEE
Confidence 344443223566766665542 33222 231 1112 3346799999999999999999 87777
No 427
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=43.37 E-value=30 Score=23.05 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCeEeeccC
Q psy2348 63 ETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~ 85 (131)
..+.++|.++|+++||.+.|--.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 57899999999999999999885
No 428
>PRK06801 hypothetical protein; Provisional
Probab=43.16 E-value=1.6e+02 Score=23.73 Aligned_cols=26 Identities=4% Similarity=-0.019 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
.+..++++++|+.+|+.|==|+-..|
T Consensus 114 i~~t~~v~~~a~~~gv~VE~ElG~vg 139 (286)
T PRK06801 114 VRQTREVVKMCHAVGVSVEAELGAVG 139 (286)
T ss_pred HHHHHHHHHHHHHcCCeEEeecCccc
Confidence 44578999999999998866665554
No 429
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=43.07 E-value=1.1e+02 Score=26.34 Aligned_cols=75 Identities=7% Similarity=0.164 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc--ccc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK--VKE 98 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~--~p~ 98 (131)
+.++-|.++||....-.+--+.+-+-.+ ...|.+-|.+.+|++-+.|++++|.|+=..--+.---+.+| -|.
T Consensus 169 ~D~~kLe~lidevG~~nvp~I~~tiT~N------sagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~g 242 (471)
T COG3033 169 FDLEKLERLIDEVGADNVPYIVLTITNN------SAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPG 242 (471)
T ss_pred cCHHHHHHHHHHhCcccCcEEEEEEecc------ccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcc
Confidence 4677778887766554444444444321 33567999999999999999999999855444443334444 355
Q ss_pred ccc
Q psy2348 99 FAK 101 (131)
Q Consensus 99 ~~~ 101 (131)
|.+
T Consensus 243 Yrd 245 (471)
T COG3033 243 YRD 245 (471)
T ss_pred ccc
Confidence 554
No 430
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.01 E-value=1.5e+02 Score=24.55 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHc--CCeEeeccCCcch
Q psy2348 60 PFRETEIFIILAAAESN--GLASIPLVPLYSD 89 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~--~IevIP~i~~~GH 89 (131)
-=|.+|+++++++++.. +|++||.-.+.|+
T Consensus 274 NDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ 305 (356)
T PRK14455 274 NDQVEHAEELADLLKGIKCHVNLIPVNPVPER 305 (356)
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecCcCCCC
Confidence 35678888888888876 6777787766654
No 431
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=42.93 E-value=83 Score=25.92 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC---CCCCCCCCH----HHHHHHHHHHHHcC--CeEeeccCCcchHHHH
Q psy2348 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRE----TEIFIILAAAESNG--LASIPLVPLYSDMDFV 93 (131)
Q Consensus 23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~---~~~~~~YT~----eeikeiv~yA~~~~--IevIP~i~~~GH~~~~ 93 (131)
-+|+..+...+|.+|+..+++-+= .||=.+. +..+...++ +-|.+++++|+++= ..+.=.+|.||-..+.
T Consensus 123 w~Y~i~IA~Eaa~~GFdEIqfDYI-RFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~ 201 (316)
T PF13200_consen 123 WDYNIDIAKEAAKLGFDEIQFDYI-RFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVAWS 201 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeee-ecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEeccccccc
Confidence 356777888899999999998432 2443221 333333333 78999999998862 2556678889887766
No 432
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=42.82 E-value=1e+02 Score=26.27 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
++.++..|+....|.++|=..- +|-+-|--.|.+|+++|++..++|++ ||.+|+
T Consensus 159 f~~mla~L~~a~~~~vvLLH~C-----cHNPTG~D~t~~qW~~l~~~~~~r~l--ip~~D~ 212 (396)
T COG1448 159 FDGMLADLKTAPEGSVVLLHGC-----CHNPTGIDPTEEQWQELADLIKERGL--IPFFDI 212 (396)
T ss_pred HHHHHHHHHhCCCCCEEEEecC-----CCCCCCCCCCHHHHHHHHHHHHHcCC--eeeeeh
Confidence 4566777777777776653321 22333457999999999999999985 888886
No 433
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=42.69 E-value=49 Score=28.06 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHcCCeEee---ccCCcchHHHH
Q psy2348 60 PFRETEIFIILAAAESNGLASIP---LVPLYSDMDFV 93 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP---~i~~~GH~~~~ 93 (131)
..|.+++.+.++-+++.|+.-|. .+-.||++..-
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~ 219 (453)
T PRK09249 183 IQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPES 219 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHH
Confidence 57999999999999999983221 23446665443
No 434
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=42.67 E-value=2e+02 Score=23.98 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccc-c
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKE-F 99 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~-~ 99 (131)
..+.++.+-+.||..|+|++.|--=.. ... +. .=-.+.++.|.+-.+.+||.|-=.++-- .|. .
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVNa---~~~~Lt---~~~l~~v~~lAdvfRpYGIkv~LSvnFa--------sP~~l 120 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVNA---NPKLLT---PEYLDKVARLADVFRPYGIKVYLSVNFA--------SPIEL 120 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS-----CGGGS---TTTHHHHHHHHHHHHHTT-EEEEEE-TT--------HHHHT
T ss_pred chhHHHHHHHHHhhcCCceEEeccccc---ChhhcC---HHHHHHHHHHHHHHhhcCCEEEEEeecc--------CCccc
Confidence 346888999999999999998722111 111 11 1125688999999999999997665532 221 1
Q ss_pred ccccccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348 100 AKMRQNFNDTRFICPNARSSLDLVFKMIGRL 130 (131)
Q Consensus 100 ~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev 130 (131)
..| .+..|.+|++.+.-++..+||
T Consensus 121 ggL-------~TaDPld~~V~~WW~~k~~eI 144 (328)
T PF07488_consen 121 GGL-------PTADPLDPEVRQWWKDKADEI 144 (328)
T ss_dssp TS--------S---TTSHHHHHHHHHHHHHH
T ss_pred CCc-------CcCCCCCHHHHHHHHHHHHHH
Confidence 122 466899999998888877775
No 435
>PRK12999 pyruvate carboxylase; Reviewed
Probab=42.65 E-value=83 Score=30.35 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=43.3
Q ss_pred eecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy2348 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG 77 (131)
Q Consensus 14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~ 77 (131)
+|-++...+++++.++.+.+...|++. +.+.||. |-+|.+++.+++...++.-
T Consensus 681 ~d~~~~~~~~~~~~~~a~~l~~~Ga~~--i~ikDt~---------G~l~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 681 LDPARAKYDLDYYVDLAKELEKAGAHI--LAIKDMA---------GLLKPAAAYELVSALKEEV 733 (1146)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCE--EEECCcc---------CCCCHHHHHHHHHHHHHHc
Confidence 566677789999999999999999875 6666653 6889999999999988764
No 436
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.48 E-value=1e+02 Score=25.78 Aligned_cols=26 Identities=8% Similarity=-0.036 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 62 RETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 62 T~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
..+.-|+++++|..+|+.|=-|+=..
T Consensus 121 NI~~Tkevve~Ah~~Gv~VEaELG~v 146 (347)
T PRK09196 121 NVDVTRKVVEMAHACGVSVEGELGCL 146 (347)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEeec
Confidence 45668999999999999998887443
No 437
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=42.45 E-value=85 Score=23.85 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=39.5
Q ss_pred HHHHHcCCCEEEEEeeccC-CCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 31 PILAYTGATSLLIEWEDTL-PYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 31 ~~la~~g~n~~~l~~ed~~-p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
+.|...|+.++++-...|. ||++ .+--+|+++-++-+++.||.|+=.=|
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~------~~~tpe~~~W~~e~k~~gi~v~vvSN 70 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDN------PDATPELRAWLAELKEAGIKVVVVSN 70 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccC------CCCCHHHHHHHHHHHhcCCEEEEEeC
Confidence 4788999999999998874 6653 55668999999999999998875544
No 438
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=42.44 E-value=56 Score=27.79 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHcC-CeEe
Q psy2348 59 NPFRETEIFIILAAAESNG-LASI 81 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~-IevI 81 (131)
-..|.+++.+.++.+++.| +.|.
T Consensus 194 R~~~~~~~~~~i~~l~~~g~~~v~ 217 (449)
T PRK09058 194 RKDDREEVLARLEELVARDRAAVV 217 (449)
T ss_pred CCCCHHHHHHHHHHHHhCCCCcEE
Confidence 3679999999999999998 5454
No 439
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=42.43 E-value=35 Score=30.16 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
-+.+.+.+++++++|+.++--+|.++.++.+-....-..+..+-...-.+.+.++++-+.+.+++.+
T Consensus 422 lp~l~~~l~~~Rk~G~~~vl~~Qs~~QL~~~YG~~~a~tIl~n~~t~i~~~~~d~~tA~~iS~~lG~ 488 (566)
T TIGR02759 422 LPDLDETIAEVRKFGGCYVLGIQSFAQLEKIYGQNGAATLFDLLNTRFFFRSPSAKMAKIVSDDLGE 488 (566)
T ss_pred chhHHHHHHHHhhcCCEEEEEeCCHHHHHHHHCHhHHHHHHhhcCCEEEEeCCCHHHHHHHHHhCCc
Confidence 4579999999999999999999999999886532211112111111124556677888888877654
No 440
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=42.42 E-value=27 Score=30.86 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
+=|.+||.++|++|+++|+.|.+-= --||+-
T Consensus 38 P~s~eeV~~iV~~A~~~g~~v~v~G-G~gHs~ 68 (557)
T TIGR01677 38 PKTEAELVSVVAAATAAGRKMKVVT-RYSHSI 68 (557)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEe-CCCCCc
Confidence 5689999999999999999988741 236763
No 441
>PRK10534 L-threonine aldolase; Provisional
Probab=42.36 E-value=30 Score=27.25 Aligned_cols=24 Identities=8% Similarity=-0.075 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 58 TNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~IevI 81 (131)
|..++.+++++|++.|+++++-||
T Consensus 141 G~v~~~~~l~~i~~~~~~~~~~lv 164 (333)
T PRK10534 141 GKVLPREYLKQAWEFTRERNLALH 164 (333)
T ss_pred CeecCHHHHHHHHHHHHHcCCeEE
Confidence 467999999999999999998765
No 442
>PRK13621 psbV cytochrome c-550; Provisional
Probab=42.34 E-value=64 Score=24.36 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=31.5
Q ss_pred ecCCCCCCHHHHHHHHHHHHHcCC-CEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy2348 15 DLKGAPPSLTYLKEILPILAYTGA-TSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAA 73 (131)
Q Consensus 15 D~~~~~~~~~~lk~~i~~la~~g~-n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA 73 (131)
|+.+..++.+.+..+++.+..-.- .+ ++ .-|.++..+.+.+|.+|++.|.+|=
T Consensus 98 ~L~~a~p~rd~I~~LV~~iknPms~kg-----~~-~~~~~~mps~~~LSdeEL~aIAaYL 151 (170)
T PRK13621 98 DLRGATPPRDNIAALVAYQRDPMSYDG-----SE-ESYGCRQVPEDWMTDEELQNLAAFI 151 (170)
T ss_pred HHhcCCCchHHHHHHHHHhhCCCCCCc-----cc-ccccccCCccCCCCHHHHHHHHHHH
Confidence 445677787777777776654211 00 00 0022333334579999999999984
No 443
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=42.31 E-value=1.6e+02 Score=22.86 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=54.2
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccC-CCC-CCCCCCCCCCHHHHHHHHHHHHHc-----CCeEeec
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTL-PYS-LGFDNTNPFRETEIFIILAAAESN-----GLASIPL 83 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~-p~~-~~~~~~~~YT~eeikeiv~yA~~~-----~IevIP~ 83 (131)
-+..|....+-+.+.+.+.++.+.+.|++++.+ ||.- |-+ |+......+|.||..+.+..|++- .+-||--
T Consensus 71 Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~i--ED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiAR 148 (243)
T cd00377 71 PVIADADTGYGNALNVARTVRELEEAGAAGIHI--EDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIAR 148 (243)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEE--ecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 367788655678889999999999999999555 5542 221 223334578999888877776652 6788888
Q ss_pred cCCcch
Q psy2348 84 VPLYSD 89 (131)
Q Consensus 84 i~~~GH 89 (131)
.|.++.
T Consensus 149 TDa~~~ 154 (243)
T cd00377 149 TDALLA 154 (243)
T ss_pred cCchhc
Confidence 777644
No 444
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.00 E-value=38 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=26.4
Q ss_pred CCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 49 LPYSLG-F-DNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 49 ~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
|||+|- + .+++++|.+.||++++..+..++.+.
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~l 35 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVF 35 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEE
Confidence 566665 1 24579999999999999999998765
No 445
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=41.90 E-value=1.5e+02 Score=23.12 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~ 87 (131)
+++...+.+....+.|.+.+. ..-.+|.+|+++|.+.|++.++-+.|....-
T Consensus 69 ~p~~~~~~~~~al~~G~~vvi--------------gttG~s~~~~~~l~~aa~~~~v~~s~n~s~g 120 (257)
T PRK00048 69 TPEATLENLEFALEHGKPLVI--------------GTTGFTEEQLAELEEAAKKIPVVIAPNFSIG 120 (257)
T ss_pred CHHHHHHHHHHHHHcCCCEEE--------------ECCCCCHHHHHHHHHHhcCCCEEEECcchHH
Confidence 555556666666667765541 1236889999999997777777777776543
No 446
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=41.78 E-value=1.1e+02 Score=23.93 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEe----eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEW----EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~----ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
-..+.|+.+++.++..|+..+.+|. .|+-|..+ ..-|++|.+.+++.|+--|
T Consensus 43 Sh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~---------~~yl~~l~~~l~~~~~g~I 98 (223)
T PF06415_consen 43 SHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSA---------LKYLEELEEKLAEIGIGRI 98 (223)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTH---------HHHHHHHHHHHHHHTCTEE
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchH---------HHHHHHHHHHHHhhCCceE
Confidence 5688899999999999998877765 23333332 4568888888888777433
No 447
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=41.57 E-value=31 Score=29.86 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 19 APPSLTYLKEILPILAYTGA---TSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~~g~---n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.-++++.|++.|.. .+. .-+.++.-.+ ..+|..+|.+++++|.+.|+++||.||=
T Consensus 152 GniD~~~Le~aI~~---~~~~~~~lV~~e~t~N------~~GG~pvs~~~l~~I~elA~~~Gl~vi~ 209 (450)
T TIGR02618 152 GNVDLKKLQKLIDE---VGADKIPYICLAVTVN------LAGGQPVSMANMREVRELCEAHGIKVFY 209 (450)
T ss_pred CCcCHHHHHHHhcc---ccCcccCceEEEEecc------cCCCeeCCHHHHHHHHHHHHHcCCEEEE
Confidence 34578888887762 221 1122333211 2235689999999999999999998863
No 448
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=41.48 E-value=96 Score=25.05 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=41.8
Q ss_pred eecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-e
Q psy2348 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-P 82 (131)
Q Consensus 14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI-P 82 (131)
.|++==..+-+.+.+.++.++..|+...++..+. +...+-++|++.|+++|+.|+ |
T Consensus 64 ~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~G-------------f~e~~~~~l~~~a~~~girilGP 120 (286)
T TIGR01019 64 ANASVIFVPAPFAADAIFEAIDAGIELIVCITEG-------------IPVHDMLKVKRYMEESGTRLIGP 120 (286)
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCC-------------CCHHHHHHHHHHHHHcCCEEECC
Confidence 4555444566778888899999999988885432 123355889999999999999 5
No 449
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=41.22 E-value=1.4e+02 Score=24.59 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=39.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 16 LKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 16 ~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
..+...+.+.+.+.+..++..|++.+.+-- |. +....+.+.+.++++..++.
T Consensus 98 ~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvg-------Ge--~p~~~~~e~l~eii~~Ik~~ 149 (366)
T TIGR02351 98 IKRKKLNEEEIEREIEAIKKSGFKEILLVT-------GE--SEKAAGVEYIAEAIKLAREY 149 (366)
T ss_pred CccCcCCHHHHHHHHHHHHhCCCCEEEEee-------CC--CCCCCCHHHHHHHHHHHHHh
Confidence 445678999999999999999999887732 21 11235678899999999876
No 450
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=41.11 E-value=1.4e+02 Score=23.31 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~ 76 (131)
.+.+.+.+.++.+..+|.+.+.+..= .|++|- +......|.+|.-++++.|+..
T Consensus 184 et~~d~~~~~~~l~~l~~~~i~l~~l--~p~~gT~l~~~~~~s~~~~~~~ia~~r~~ 238 (296)
T TIGR00433 184 ETVEDRIGLALALANLPPESVPINFL--VKIKGTPLADNKELSADDALKTIALARII 238 (296)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeeee--EEcCCCccCCCCCCCHHHHHHHHHHHHHH
Confidence 45666667777777777665544332 244443 2223356777777777777765
No 451
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=41.08 E-value=1.1e+02 Score=23.63 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCEEEEE-----eeccCCCC-CC----CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348 27 KEILPILAYTGATSLLIE-----WEDTLPYS-LG----FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~-----~ed~~p~~-~~----~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~ 90 (131)
|++.-.|+..|.+.+.++ --|+=... ++ +.+.| .-+||..++.+|+++|+.||----.|.=+
T Consensus 55 kk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SG--eT~el~~~~~~aK~~g~~liaiT~~~~Ss 126 (202)
T COG0794 55 KKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSG--ETKELLNLAPKAKRLGAKLIAITSNPDSS 126 (202)
T ss_pred HHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCC--cHHHHHHHHHHHHHcCCcEEEEeCCCCCh
Confidence 567778888999998887 33332222 33 22222 34789999999999999999765555443
No 452
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=41.01 E-value=34 Score=22.65 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 59 NPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 59 ~~YT~eeikeiv~yA~~~~IevI 81 (131)
-+.|.+|.++|++.|++.|..+.
T Consensus 95 ~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 95 LALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp SSSSHHHHHHHHHHHHHHTSCEE
T ss_pred CcCCHHHHHHHHHHHHHhCCEEE
Confidence 46799999999999999998763
No 453
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=40.97 E-value=52 Score=27.54 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHcC--CeEeecc
Q psy2348 60 PFRETEIFIILAAAESNG--LASIPLV 84 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~--IevIP~i 84 (131)
.||.+++++++..+++.+ |.|...+
T Consensus 270 ~~~~~~~~~~i~~lr~~~~~i~i~~~~ 296 (429)
T TIGR00089 270 KYTREEYLDIVEKIRAKIPDAAITTDI 296 (429)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEeeE
Confidence 589999999999999998 7766544
No 454
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=40.74 E-value=26 Score=20.00 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=12.0
Q ss_pred CCCCCHHHHHHHHH
Q psy2348 58 TNPFRETEIFIILA 71 (131)
Q Consensus 58 ~~~YT~eeikeiv~ 71 (131)
.|+||.+|++++++
T Consensus 11 ~GP~s~~el~~l~~ 24 (45)
T PF14237_consen 11 QGPFSLEELRQLIS 24 (45)
T ss_pred ECCcCHHHHHHHHH
Confidence 47999999999875
No 455
>PLN02858 fructose-bisphosphate aldolase
Probab=40.74 E-value=1.2e+02 Score=29.81 Aligned_cols=62 Identities=26% Similarity=0.215 Sum_probs=36.6
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G 88 (131)
.+||| |-.+.+.+++-|+ .|++++++-=. ..||+. ..+.-|+++++|..+||.|=-|+=..|
T Consensus 1173 ~lHLD---Hg~~~~~i~~ai~----~Gf~SVM~DgS-~l~~ee--------Ni~~t~~vv~~Ah~~gv~VEaElG~v~ 1234 (1378)
T PLN02858 1173 TVHFD---HGTSKHELLEALE----LGFDSVMVDGS-HLSFTE--------NISYTKSISSLAHSKGLMVEAELGRLS 1234 (1378)
T ss_pred EEECC---CCCCHHHHHHHHH----hCCCEEEEeCC-CCCHHH--------HHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 45555 3334555555544 46666655221 122221 233478999999999999988875554
No 456
>PRK05422 smpB SsrA-binding protein; Validated
Probab=40.70 E-value=32 Score=25.43 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 60 PFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
-+.+.||..|.....+.|.++||.
T Consensus 82 LLhk~EI~kl~~~~~~kG~TiVPl 105 (148)
T PRK05422 82 LLHKKEIDKLIGKVERKGYTLVPL 105 (148)
T ss_pred ccCHHHHHHHHHHHhcCCcEEEee
Confidence 478999999999999999999996
No 457
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=40.69 E-value=36 Score=26.31 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 58 TNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~IevI 81 (131)
|..++.+++++|++.|+++|+-+|
T Consensus 146 G~~~~~~~l~~l~~~~~~~~~~~i 169 (350)
T cd00609 146 GAVLSEEELEELAELAKKHGILII 169 (350)
T ss_pred CcccCHHHHHHHHHHHHhCCeEEE
Confidence 457889999999999999998776
No 458
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=40.52 E-value=26 Score=26.77 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccC----------CCCCC-CCCCCCCCHHHHH-----------------HHHHHH
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTL----------PYSLG-FDNTNPFRETEIF-----------------IILAAA 73 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~----------p~~~~-~~~~~~YT~eeik-----------------eiv~yA 73 (131)
+.+...++.+-|..-|+..+.+-+.... .|++- +.-|.-+|.++++ +++++|
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~ 97 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYA 97 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHH
Confidence 4677788899999999987666553211 01111 3345578888875 578899
Q ss_pred HHcCCeEeeccCCcchHHHHhcc
Q psy2348 74 ESNGLASIPLVPLYSDMDFVLKV 96 (131)
Q Consensus 74 ~~~~IevIP~i~~~GH~~~~L~~ 96 (131)
++++|-+||=+-||.-...++.+
T Consensus 98 ~~~~i~~iPG~~TptEi~~A~~~ 120 (196)
T PF01081_consen 98 REYGIPYIPGVMTPTEIMQALEA 120 (196)
T ss_dssp HHHTSEEEEEESSHHHHHHHHHT
T ss_pred HHcCCcccCCcCCHHHHHHHHHC
Confidence 99999999999999998888754
No 459
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=40.50 E-value=60 Score=22.51 Aligned_cols=55 Identities=15% Similarity=0.000 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
++.++.|+..|...+.+-++...+.......++..+.+++.+-++.+.+.++.+.
T Consensus 88 ~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 142 (204)
T cd01335 88 EELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLS 142 (204)
T ss_pred HHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCce
Confidence 4455666666777777766643322111111256788888888888888665544
No 460
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=40.45 E-value=1.2e+02 Score=23.68 Aligned_cols=20 Identities=35% Similarity=0.256 Sum_probs=13.9
Q ss_pred HHHHHHHcCCCEEEEEeecc
Q psy2348 29 ILPILAYTGATSLLIEWEDT 48 (131)
Q Consensus 29 ~i~~la~~g~n~~~l~~ed~ 48 (131)
.++.++..|+..+++..||.
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~ 44 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHA 44 (249)
T ss_pred HHHHHHhcCCCEEEEeccCC
Confidence 45567777777777777764
No 461
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=40.41 E-value=1.2e+02 Score=20.81 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHcC--CeEeeccCCcchH
Q psy2348 63 ETEIFIILAAAESNG--LASIPLVPLYSDM 90 (131)
Q Consensus 63 ~eeikeiv~yA~~~~--IevIP~i~~~GH~ 90 (131)
..+++++++.+++.. +=||..++-+|-.
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~ 80 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGRS 80 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhCc
Confidence 456666666665544 5555666665553
No 462
>PRK08508 biotin synthase; Provisional
Probab=40.30 E-value=74 Score=25.19 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeE
Q psy2348 60 PFRETEIFIILAAAESNGLAS 80 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~Iev 80 (131)
.-|-+++.+.+..|++.||++
T Consensus 133 ~~~~~~~l~~i~~a~~~Gi~v 153 (279)
T PRK08508 133 THTWEERFQTCENAKEAGLGL 153 (279)
T ss_pred CCCHHHHHHHHHHHHHcCCee
Confidence 468899999999999999986
No 463
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=40.24 E-value=1.1e+02 Score=24.77 Aligned_cols=104 Identities=9% Similarity=0.057 Sum_probs=61.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--CEEEEEeeccCCCC-CCC-CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348 18 GAPPSLTYLKEILPILAYTGA--TSLLIEWEDTLPYS-LGF-DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~--n~~~l~~ed~~p~~-~~~-~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~ 93 (131)
-...+-+.++++++.+.+.++ .++.+.+..+..+. +.+ -+...| -+.+++++..+++|+.||+.++ |+ +
T Consensus 18 ~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~F--Pdp~~mi~~L~~~G~kv~~~i~-P~----v 90 (319)
T cd06591 18 ERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERF--PDPKAMVRELHEMNAELMISIW-PT----F 90 (319)
T ss_pred ccCCCHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhC--CCHHHHHHHHHHCCCEEEEEec-CC----c
Confidence 345688999999999999987 56666543221111 110 011223 2678999999999999987654 32 1
Q ss_pred h-cccccccccc----------------cCCCCceecCCChhHHHHHHHHHh
Q psy2348 94 L-KVKEFAKMRQ----------------NFNDTRFICPNARSSLDLVFKMIG 128 (131)
Q Consensus 94 L-~~p~~~~l~e----------------~~~~~~~lcp~~~~t~~f~~~ll~ 128 (131)
. ..+.|.+..+ ++.....++.+||++.+...+.+.
T Consensus 91 ~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 142 (319)
T cd06591 91 GPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLK 142 (319)
T ss_pred CCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHH
Confidence 1 1222222211 112235789999999887654443
No 464
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=39.93 E-value=39 Score=27.76 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=26.8
Q ss_pred CCCCCC-C-CCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 49 LPYSLG-F-DNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 49 ~p~~~~-~-~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
|||+|- + .+++++|.++||++++..+.+++.+.=
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh 36 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLH 36 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEE
Confidence 456665 1 135799999999999999999988763
No 465
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=39.92 E-value=1.7e+02 Score=23.95 Aligned_cols=70 Identities=13% Similarity=-0.138 Sum_probs=46.9
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCC------------------C------------------
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSL------------------G------------------ 54 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~------------------~------------------ 54 (131)
.+|+|. +.-.+++.-.++++.|+.+++. .+|+.+|... +
T Consensus 165 ~l~vDa-N~~w~~~~A~~~~~~l~~~~l~----~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~d 239 (361)
T cd03322 165 HLLHDV-HHRLTPNQAARFGKDVEPYRLF----WMEDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLID 239 (361)
T ss_pred eEEEEC-CCCCCHHHHHHHHHHhhhcCCC----EEECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCC
Confidence 378888 4557889899999999987753 3343332110 0
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348 55 ---FDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (131)
Q Consensus 55 ---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~ 85 (131)
..-...-...+.+++.+.|+++||.+.|--.
T Consensus 240 i~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 240 YIRTTVSHAGGITPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCeeeccCC
Confidence 0001124567889999999999999999653
No 466
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=39.91 E-value=29 Score=30.66 Aligned_cols=33 Identities=15% Similarity=-0.089 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL 94 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L 94 (131)
+=|.+|+.+|++.|+++|+.|.| .--||+-.-+
T Consensus 68 P~s~eEV~~iV~~A~~~g~~Vr~--~GsGhS~sg~ 100 (541)
T TIGR01676 68 PEAIEELEGIVKQANEKKARIRP--VGSGLSPNGI 100 (541)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--ECCCcCCCCc
Confidence 46899999999999999999999 4458875443
No 467
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=39.91 E-value=32 Score=27.60 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348 60 PFRETEIFIILAAAESNGLASIPL 83 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~ 83 (131)
+-|.+|+.+++++|++.++.+++.
T Consensus 37 P~s~edv~~~v~~a~~~~~p~~v~ 60 (298)
T PRK13905 37 PADIEDLQEFLKLLKENNIPVTVL 60 (298)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 569999999999999999998873
No 468
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=39.87 E-value=1.5e+02 Score=23.11 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG 77 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~ 77 (131)
-+++++.++++.+..+|+.. +.+.||. |..|.+++.+++...++..
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~--i~l~DT~---------G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATT--INIPDTV---------GYLTPEEFGELIKKLKENV 185 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEECCCC---------CCCCHHHHHHHHHHHHHhC
Confidence 45666666666666666654 4444543 7899999999999999853
No 469
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=39.83 E-value=1.9e+02 Score=23.08 Aligned_cols=30 Identities=10% Similarity=0.064 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348 62 RETEIFIILAAAESNGLASIPLVPLYSDMD 91 (131)
Q Consensus 62 T~eeikeiv~yA~~~~IevIP~i~~~GH~~ 91 (131)
+.+.+.++++-+.+.|+..|=.-||.|.+.
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~ 174 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPDTLGILS 174 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCCC
Confidence 345555555555555555555555555543
No 470
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=39.73 E-value=1.7e+02 Score=23.97 Aligned_cols=69 Identities=17% Similarity=-0.130 Sum_probs=44.6
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC------------------CC-CCC--------------
Q psy2348 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS------------------LG-FDN-------------- 57 (131)
Q Consensus 11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~------------------~~-~~~-------------- 57 (131)
.+++|.- .-.+++.-.++++.|+.+++. .+|+.++.. |+ +.+
T Consensus 191 ~l~vDan-~~~~~~~A~~~~~~l~~~~l~----~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~ 265 (368)
T cd03329 191 RLMHDGA-HWYSRADALRLGRALEELGFF----WYEDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGAT 265 (368)
T ss_pred eEEEECC-CCcCHHHHHHHHHHhhhcCCC----eEeCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCC
Confidence 5788885 445888888999999987752 233322210 00 000
Q ss_pred -------CCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 58 -------TNPFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 58 -------~~~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
.-.-...+.++|.+.|+++||.+.|-.
T Consensus 266 d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 266 DFLRADVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CEEecCccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 001235678899999999999999954
No 471
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=39.64 E-value=1.3e+02 Score=22.86 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCC-CCCC--CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGF-DNTN--PFRETEIFIILAAAESNGLASIPLV 84 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~-~~~~--~YT~eeikeiv~yA~~~~IevIP~i 84 (131)
.++.+++.++..+.+|+..+.++.-..-. .... +... .-..+-++++.++|+++++.+--+-
T Consensus 82 ~~~~~~~~i~~a~~lg~~~vv~~~g~~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~ 146 (274)
T COG1082 82 ALEELKRAIELAKELGAKVVVVHPGLGAG-ADDPDSPEEARERWAEALEELAEIAEELGIGLALEN 146 (274)
T ss_pred HHHHHHHHHHHHHHcCCCeEEeecccCCc-CCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEee
Confidence 37788889999999998877765421110 0000 0111 2268889999999999999887774
No 472
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=39.50 E-value=36 Score=20.66 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHHc
Q psy2348 60 PFRETEIFIILAAAESN 76 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~ 76 (131)
.+|.+|++.|++|=++.
T Consensus 74 ~ls~~e~~~l~ayl~sl 90 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRSL 90 (91)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 59999999999998764
No 473
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=39.47 E-value=1.8e+02 Score=24.05 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
.+.+++.+++..+...|++. +.+-||. |..|.+++.++++..+++
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~--i~l~DT~---------G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADR--INIADTV---------GVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCE--EEEeCCC---------CccCHHHHHHHHHHHhcc
Confidence 46888888888888888875 5556654 678888999998888765
No 474
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=39.34 E-value=47 Score=21.83 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHcCCeEe--eccCCcch
Q psy2348 61 FRETEIFIILAAAESNGLASI--PLVPLYSD 89 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~IevI--P~i~~~GH 89 (131)
-|.+++.++.+..+++|+++. |.-..+|+
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~ 100 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGV 100 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCC
Confidence 577899999999999999987 44344443
No 475
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=39.31 E-value=54 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEee
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWE 46 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~e 46 (131)
|+++.||++++.|..-+++.+.++.+
T Consensus 1 Md~~~Ik~Li~~~~~s~l~elei~~~ 26 (156)
T TIGR00531 1 MNIREIKELIKLIEESGITELELKEE 26 (156)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 46789999999999999987666544
No 476
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=39.23 E-value=41 Score=26.08 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.+|.|.-++..+++++|+++||+|-+
T Consensus 9 ~~G~~n~~~~D~~~~~a~~~gi~v~g 34 (254)
T smart00633 9 SRGQFNFSGADAIVNFAKENGIKVRG 34 (254)
T ss_pred CCCccChHHHHHHHHHHHHCCCEEEE
Confidence 45789999999999999999999853
No 477
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=39.09 E-value=28 Score=24.03 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=22.5
Q ss_pred CEEEEEeeccCCCC----CCCCCCCCCCH------HHHHHHHHHHHHcCCeEe
Q psy2348 39 TSLLIEWEDTLPYS----LGFDNTNPFRE------TEIFIILAAAESNGLASI 81 (131)
Q Consensus 39 n~~~l~~ed~~p~~----~~~~~~~~YT~------eeikeiv~yA~~~~IevI 81 (131)
..+.|+||..-++. |...+++.++| +--.+=++||++.|++-.
T Consensus 21 ~~W~lefe~~~~~~~PLMGWtss~D~~~q~v~l~F~skE~Ai~yaer~G~~Y~ 73 (101)
T PF04800_consen 21 KKWVLEFETRARWENPLMGWTSSGDPLSQSVRLKFDSKEDAIAYAERNGWDYE 73 (101)
T ss_dssp --EEEEEEESSS---TTT-SSSS--SEEE-CEEEESSHHHHHHHHHHCT-EEE
T ss_pred CCEEEeecCcCCcCCCccCCCCCCChhhCeeEeeeCCHHHHHHHHHHcCCeEE
Confidence 46889998543332 22334445554 223356899999999873
No 478
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=38.91 E-value=37 Score=30.73 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348 62 RETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGR 129 (131)
Q Consensus 62 T~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~e 129 (131)
-.+.+.+.+++.+.+||.++.-+|.++-++.+-.......+..+-...-.+-+.+++|.+.+.+++.+
T Consensus 403 ~ip~l~~~la~~RgyGi~~~~I~QslsQL~~~YG~~~a~tIl~Nc~~~i~lg~~D~~TAe~iS~~LG~ 470 (670)
T PRK13850 403 KLEAIETAITTIAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGD 470 (670)
T ss_pred chHHHHHHHHHhccCCcEEEEEEEcHHHHHHHhCHhHHHHHHHhCCcEEEeecCCHHHHHHHHHHhCC
Confidence 35689999999999999999999999999876332111122111112235677788899999888754
No 479
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=38.88 E-value=1.3e+02 Score=26.47 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
..-+++++.++...+...|+.. +.+.||. |..|.+++++++...++.
T Consensus 150 p~~t~e~~~~~a~~l~~~Gad~--I~IkDta---------Gll~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 150 PIHTVEGFVEQAKRLLDMGADS--ICIKDMA---------ALLKPQPAYDIVKGIKEA 196 (499)
T ss_pred CCCCHHHHHHHHHHHHHcCCCE--EEeCCCc---------cCCCHHHHHHHHHHHHHh
Confidence 4558999999999999999876 5666653 788999999999998875
No 480
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=38.86 E-value=1.1e+02 Score=24.48 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~ 76 (131)
-+++++.++++.+...|+.. +.+.||. |..+..++.+++...++.
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~--i~l~DT~---------G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYE--ISLGDTI---------GVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcE--EEecccc---------CccCHHHHHHHHHHHHHh
Confidence 47899999999999999875 6666654 688999999999998875
No 481
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=38.69 E-value=1.2e+02 Score=25.97 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHcC---CeEeeccCCcch
Q psy2348 61 FRETEIFIILAAAESNG---LASIPLVPLYSD 89 (131)
Q Consensus 61 YT~eeikeiv~yA~~~~---IevIP~i~~~GH 89 (131)
++.+||.+|++++++.| +.|+|.+.+|-|
T Consensus 200 iND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~ 231 (442)
T TIGR01290 200 INDEHLVEVSKQVKELGAFLHNVMPLISAPEH 231 (442)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEeecCCCcccc
Confidence 35589999999999998 468999988855
No 482
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=38.68 E-value=2.1e+02 Score=23.07 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=52.5
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc-CCCC-CCCCCC---CCCCHHHHHHHHHHHHHc----CCeEee
Q psy2348 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT-LPYS-LGFDNT---NPFRETEIFIILAAAESN----GLASIP 82 (131)
Q Consensus 12 ~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~-~p~~-~~~~~~---~~YT~eeikeiv~yA~~~----~IevIP 82 (131)
+..|.-.. -+...+.+.++.+...|+.++. +||. +|-. |+..+. ...|.+|..+-+..|++. .+-||-
T Consensus 81 v~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~--iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiA 157 (285)
T TIGR02320 81 IILDGDTG-GNFEHFRRLVRKLERRGVSAVC--IEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIA 157 (285)
T ss_pred EEEecCCC-CCHHHHHHHHHHHHHcCCeEEE--EeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 67888433 5999999999999999999955 4664 3433 223322 357999999988888764 477888
Q ss_pred ccCCc
Q psy2348 83 LVPLY 87 (131)
Q Consensus 83 ~i~~~ 87 (131)
-.|.+
T Consensus 158 RTDa~ 162 (285)
T TIGR02320 158 RVESL 162 (285)
T ss_pred ecccc
Confidence 86765
No 483
>PRK03906 mannonate dehydratase; Provisional
Probab=38.61 E-value=79 Score=26.72 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=13.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q psy2348 18 GAPPSLTYLKEILPILAYTGAT 39 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g~n 39 (131)
+.+.+++.|+++-+.+...|++
T Consensus 37 g~~W~~~~i~~~~~~ie~~Gl~ 58 (385)
T PRK03906 37 GEVWPVEEILARKAEIEAAGLE 58 (385)
T ss_pred CCCCCHHHHHHHHHHHHHcCCe
Confidence 5556666666666666666543
No 484
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=38.59 E-value=98 Score=24.72 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCE----EEEEee---ccC----------CCCCC-CCCCC-CCCHHHHHHHHHHHHHcCCeE
Q psy2348 20 PPSLTYLKEILPILAYTGATS----LLIEWE---DTL----------PYSLG-FDNTN-PFRETEIFIILAAAESNGLAS 80 (131)
Q Consensus 20 ~~~~~~lk~~i~~la~~g~n~----~~l~~e---d~~----------p~~~~-~~~~~-~YT~eeikeiv~yA~~~~Iev 80 (131)
..+.+.+|+.++....+++.. ...++- +.+ .|.-- +.+|- .+|-++-.++++-|.+.|..|
T Consensus 56 Li~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 56 LIDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred cccHHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEE
Confidence 567888999999999988732 122221 000 00000 22221 466666666666666666666
Q ss_pred eecc
Q psy2348 81 IPLV 84 (131)
Q Consensus 81 IP~i 84 (131)
-||+
T Consensus 136 lsEv 139 (258)
T COG1809 136 LSEV 139 (258)
T ss_pred ehhh
Confidence 6665
No 485
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=38.58 E-value=52 Score=24.15 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=26.2
Q ss_pred eeEEeecCCCCCCHHHHHHHHHHHHHcCCC
Q psy2348 10 VLVHLDLKGAPPSLTYLKEILPILAYTGAT 39 (131)
Q Consensus 10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n 39 (131)
--+|+|+.....|-+.|++.+-+...+|+.
T Consensus 96 ~EiHiDIg~~g~T~~~i~E~vG~v~~~G~~ 125 (144)
T PF04308_consen 96 LEIHIDIGTNGKTRELIKEVVGYVEGMGFE 125 (144)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHHHCCce
Confidence 358999988999999999999999988863
No 486
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.51 E-value=34 Score=28.36 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHc--CCeEeeccC
Q psy2348 63 ETEIFIILAAAESN--GLASIPLVP 85 (131)
Q Consensus 63 ~eeikeiv~yA~~~--~IevIP~i~ 85 (131)
.+|+++|+++++.. +|++||.-.
T Consensus 272 ~ed~~~l~~~l~~~~~~VnLIpyn~ 296 (354)
T PRK14460 272 LEHARELVRLLSRTKCKLNLIVYNP 296 (354)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCC
Confidence 34444444444443 334444433
No 487
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=38.51 E-value=1.4e+02 Score=24.62 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeE
Q psy2348 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN-GLAS 80 (131)
Q Consensus 22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~-~Iev 80 (131)
+.+++.+++..+...|+.. +.+-||. |..|.+++.+++...+++ ++.|
T Consensus 140 ~~~~l~~~~~~~~~~Ga~~--i~l~DT~---------G~~~P~~v~~lv~~l~~~~~v~l 188 (365)
T TIGR02660 140 DPDFLVELAEVAAEAGADR--FRFADTV---------GILDPFSTYELVRALRQAVDLPL 188 (365)
T ss_pred CHHHHHHHHHHHHHcCcCE--EEEcccC---------CCCCHHHHHHHHHHHHHhcCCeE
No 488
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=38.50 E-value=1.7e+02 Score=23.63 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=42.6
Q ss_pred CceeEEeecCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348 8 KEVLVHLDLKGAPP--SLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLAS 80 (131)
Q Consensus 8 ~~Rg~mlD~~~~~~--~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~Iev 80 (131)
.+-.||+|-|...+ +++.-++..+....+|+. +..|+...-.-.+. ......|| +..+...++++-|+..
T Consensus 97 GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~~T--~pe~a~~Fv~~TgvD~ 169 (283)
T PRK07998 97 GFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVP-VEAELGAILGKEDDHVSEADCKT--EPEKVKDFVERTGCDM 169 (283)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeccCCCccccccccccccC--CHHHHHHHHHHhCcCe
Confidence 56789999998776 788888999999999885 44454321100000 11122354 3444566667767654
No 489
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=38.48 E-value=1.5e+02 Score=23.59 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=37.2
Q ss_pred CCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348 4 PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 4 ~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP 82 (131)
.||-.-.-.++|-. +++.+++.++...+.+ +..+-+-| .....|..+-+|+.++.|+++||.|-|
T Consensus 8 KPR~~GlT~v~Dkg---lg~~~~~dlLe~ag~y-ID~~K~g~----------Gt~~l~~~~~l~eki~l~~~~gV~v~~ 72 (244)
T PF02679_consen 8 KPRSRGLTMVIDKG---LGLRYLEDLLESAGDY-IDFLKFGW----------GTSALYPEEILKEKIDLAHSHGVYVYP 72 (244)
T ss_dssp SS-SSS-EEEEESS-----HHHHHHHHHHHGGG--SEEEE-T----------TGGGGSTCHHHHHHHHHHHCTT-EEEE
T ss_pred CCCCCCcEEEecCC---CCHHHHHHHHHHhhhh-ccEEEecC----------ceeeecCHHHHHHHHHHHHHcCCeEeC
Confidence 35555566777766 8888888888777654 12222222 122356677778888888888887765
No 490
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=38.46 E-value=1.5e+02 Score=21.25 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCEEEEEeeccCCCCCCCCCCCCC---CHHHHHHHHHHHHHc-CCeEeeccCCcchHH
Q psy2348 18 GAPPSLTYLKEILPILAYTG-ATSLLIEWEDTLPYSLGFDNTNPF---RETEIFIILAAAESN-GLASIPLVPLYSDMD 91 (131)
Q Consensus 18 ~~~~~~~~lk~~i~~la~~g-~n~~~l~~ed~~p~~~~~~~~~~Y---T~eeikeiv~yA~~~-~IevIP~i~~~GH~~ 91 (131)
+..++.+.++++++.+...+ ..++.+ . +|.++ ..+++.+++.+|++. ++..+- .+-|...
T Consensus 43 g~~~~~~~~~~i~~~l~~~~~~~gVt~--------s----GGEPllq~~~~~l~~ll~~~k~~~~~~~~~--~~tG~~~ 107 (154)
T TIGR02491 43 GKEFTEALEKEIIRDLNDNPLIDGLTL--------S----GGDPLYPRNVEELIELVKKIKAEFPEKDIW--LWTGYTW 107 (154)
T ss_pred CCcCCHHHHHHHHHHHHhcCCcCeEEE--------e----ChhhCCCCCHHHHHHHHHHHHHhCCCCCEE--EeeCccH
Confidence 66788888999999998876 333222 2 23344 447999999999986 554222 2566653
No 491
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=38.33 E-value=93 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPL 86 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~ 86 (131)
.++..||..-++.|.+.|+++|=||+.
T Consensus 93 Rf~Etdi~~Kv~~a~~~gl~~IvCi~~ 119 (205)
T TIGR00419 93 RMKLADIEKKIARLKELGLTSVVCTNN 119 (205)
T ss_pred CCCccHHHHHHHHHHHCCCEEEEEEHH
Confidence 377888999999999999999999943
No 492
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=38.31 E-value=39 Score=24.25 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q psy2348 58 TNPFRETEIFIILAAAESNGL 78 (131)
Q Consensus 58 ~~~YT~eeikeiv~yA~~~~I 78 (131)
...+|.||++.+++-+.+-|+
T Consensus 158 ~~~~s~eel~~lv~~~~e~G~ 178 (183)
T PF01595_consen 158 DPAVSEEELRSLVEEGEEEGV 178 (183)
T ss_pred cCCCCHHHHHHHHHhHHHCCC
Confidence 458999999999999999884
No 493
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=38.28 E-value=1.1e+02 Score=24.30 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (131)
Q Consensus 26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI 81 (131)
+..-|.+|..+|.+++-+ ||-.| -=+.||++.+.+.|+++|+.+=
T Consensus 137 vetAiaml~dmG~~SiKf-----fPM~G------l~~leE~~avA~aca~~g~~lE 181 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKF-----FPMGG------LKHLEEYAAVAKACAKHGFYLE 181 (236)
T ss_pred HHHHHHHHHHcCCCeeeE-----eecCC------cccHHHHHHHHHHHHHcCCccC
Confidence 567889999999988654 44443 4467888888888888888653
No 494
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=38.19 E-value=53 Score=23.99 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeec
Q psy2348 21 PSLTYLKEILPILAYTGATSLLIEWED 47 (131)
Q Consensus 21 ~~~~~lk~~i~~la~~g~n~~~l~~ed 47 (131)
|+++.||++++.|...+++.+.++.++
T Consensus 1 Md~~~I~~Li~~~~~s~l~ele~~~~~ 27 (155)
T PRK06302 1 MDIRKIKKLIELVDESGISEFEIKEGE 27 (155)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEcCC
Confidence 467899999999999999887665543
No 495
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=38.07 E-value=1.1e+02 Score=24.49 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeEeeccCCcchH
Q psy2348 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN-GLASIPLVPLYSDM 90 (131)
Q Consensus 17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~-~IevIP~i~~~GH~ 90 (131)
....++.+.+.++++.+...|+..+.+. | |.++...++.++++++++. ++.-| .+.|-|.+
T Consensus 45 ~~~~ls~eei~~~i~~~~~~gi~~I~~t--------G----GEPll~~~l~~li~~i~~~~~~~~i-~itTNG~l 106 (331)
T PRK00164 45 KEELLSLEEIERLVRAFVALGVRKVRLT--------G----GEPLLRKDLEDIIAALAALPGIRDL-ALTTNGYL 106 (331)
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEEE--------C----CCCcCccCHHHHHHHHHhcCCCceE-EEEcCchh
Confidence 3567899999999999999998876651 2 2345556788999999887 33322 35676754
No 496
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=38.02 E-value=20 Score=26.73 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEee-------ccCCcchHHHHhc
Q psy2348 57 NTNPFRETEIFIILAAAESNGLASIP-------LVPLYSDMDFVLK 95 (131)
Q Consensus 57 ~~~~YT~eeikeiv~yA~~~~IevIP-------~i~~~GH~~~~L~ 95 (131)
..+|++ +||.+++..++..|+.||= .-+.||-+..++.
T Consensus 84 EaQFf~-~~i~~l~~~~~~~g~~Vi~~GL~~df~~~~F~~~~~Ll~ 128 (176)
T PF00265_consen 84 EAQFFD-EQIVQLVEILANKGIPVICAGLDTDFRGEPFGGSPRLLP 128 (176)
T ss_dssp SGGGST-TTHHHHHHHHHHTT-EEEEEEESB-TTSSB-TTHHHHHH
T ss_pred chHhhH-HHHHHHHHHHHhCCCeEEEEeeCCccccCcchhHHHHHh
Confidence 456999 9999999999999999984 2456777777764
No 497
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=37.94 E-value=35 Score=27.66 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHcCCeEee
Q psy2348 60 PFRETEIFIILAAAESNGLASIP 82 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP 82 (131)
+=|.+|+.+++++|++++|.+++
T Consensus 43 p~~~edv~~~l~~a~~~~ip~~v 65 (305)
T PRK12436 43 PTNYDEIQEVIKYANKYNIPVTF 65 (305)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE
Confidence 57999999999999999999888
No 498
>PLN03244 alpha-amylase; Provisional
Probab=37.82 E-value=34 Score=32.00 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH----hc----cc-cccccccc----CCCCceecCCChhHHHHHHHH
Q psy2348 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFV----LK----VK-EFAKMRQN----FNDTRFICPNARSSLDLVFKM 126 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~----L~----~p-~~~~l~e~----~~~~~~lcp~~~~t~~f~~~l 126 (131)
+=|.+|+|++|+-|-++||.||=.+= +.|+..= |. .+ .|-..... .-....++-+++++.+|+-+.
T Consensus 437 YGTPeDLK~LVD~aH~~GI~VILDvV-~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsn 515 (872)
T PLN03244 437 YGTPDDFKRLVDEAHGLGLLVFLDIV-HSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISN 515 (872)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEec-CccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHH
Confidence 44799999999999999999997763 5666421 11 01 12111100 011356888899999998776
Q ss_pred H
Q psy2348 127 I 127 (131)
Q Consensus 127 l 127 (131)
+
T Consensus 516 a 516 (872)
T PLN03244 516 L 516 (872)
T ss_pred H
Confidence 5
No 499
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=37.71 E-value=72 Score=27.67 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHcCCe
Q psy2348 60 PFRETEIFIILAAAESNGLA 79 (131)
Q Consensus 60 ~YT~eeikeiv~yA~~~~Ie 79 (131)
..|.+++.+.++.|++.|+.
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~ 320 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFD 320 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCC
Confidence 58999999999999999983
No 500
>KOG2550|consensus
Probab=37.68 E-value=1.1e+02 Score=26.62 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCeEeec--cCCcchHHHHhcc
Q psy2348 66 IFIILAAAESNGLASIPL--VPLYSDMDFVLKV 96 (131)
Q Consensus 66 ikeiv~yA~~~~IevIP~--i~~~GH~~~~L~~ 96 (131)
+-++..||.++|+-||-. ||.+||.-.+|..
T Consensus 343 Vy~va~~A~q~gvpviADGGiq~~Ghi~KAl~l 375 (503)
T KOG2550|consen 343 VYKVAEFANQFGVPCIADGGIQNVGHVVKALGL 375 (503)
T ss_pred hhhHHHHHHhcCCceeecCCcCccchhHhhhhc
Confidence 345667999999999974 9999999998763
Done!