RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2348
         (131 letters)



>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
           GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
           2epm_X 2epn_A* 2epo_A
          Length = 627

 Score = 58.5 bits (141), Expect = 3e-11
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 11/128 (8%)

Query: 7   FKEVLVHLDL-KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LGFDNTNPF 61
           ++++    D  + A  +L+  K+++ +LA  G ++  +  EDT         G+     +
Sbjct: 84  YEDLAYMADCSRNAVLNLSSAKKMIEVLALMGYSTFELYMEDTYEIENQPYFGYFR-GRY 142

Query: 62  RETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV--KEFAKMRQNFNDTRFICPNARSS 119
              E+  I   A    ++ +P +   + +   +K   KE  ++R   +    +       
Sbjct: 143 TVAELQEIEDYAADFDMSFVPCIQTLAHLSAFVKWGIKEVQELRDVED---ILLIGEEKV 199

Query: 120 LDLVFKMI 127
            DL+  M 
Sbjct: 200 YDLIEGMF 207


>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
           hydrolase; 1.72A {Homo sapiens}
          Length = 239

 Score = 28.2 bits (63), Expect = 0.73
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 91  DFVLKVKEFAKMRQNFNDTRFICPNA 116
              + +K+       F   + I P A
Sbjct: 38  GLRMWIKQVLNQDLTFQHIKIIYPTA 63


>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
           c.69.1.14 PDB: 1aur_A*
          Length = 218

 Score = 25.9 bits (57), Expect = 4.3
 Identities = 5/15 (33%), Positives = 10/15 (66%)

Query: 102 MRQNFNDTRFICPNA 116
           ++++   TRF+ P A
Sbjct: 37  LQESLLTTRFVLPQA 51


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 4.7
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 26/94 (27%)

Query: 40  SLLIEWEDTLPYS---LGFDNTNPFRET--------EIFIILAAAESNGLASIPLVPLYS 88
           SL+ +       S   +  +                + + I    +S+ L      P Y 
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI-----PPYL 469

Query: 89  D----------MDFVLKVKEFAKMRQNFNDTRFI 112
           D          +  +   +     R  F D RF+
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503


>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease,
           helix-turn-helix, HTH, trans regulator; 2.34A
           {Thermotoga maritima} PDB: 3hyj_A
          Length = 295

 Score = 25.6 bits (56), Expect = 4.9
 Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 3/28 (10%)

Query: 24  TYLKE---ILPILAYTGATSLLIEWEDT 48
            Y+K    IL  L   G    L E +  
Sbjct: 170 LYIKSIKDILVFLEAIGVQRKLEEIDRI 197


>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine
           hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo
           sapiens} SCOP: c.69.1.14
          Length = 232

 Score = 25.5 bits (56), Expect = 5.9
 Identities = 4/12 (33%), Positives = 8/12 (66%)

Query: 105 NFNDTRFICPNA 116
             +  ++ICP+A
Sbjct: 47  RSSHIKYICPHA 58


>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
           hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
           3cn7_A*
          Length = 226

 Score = 25.5 bits (56), Expect = 5.9
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 102 MRQNFNDTRFICPNA 116
           ++     TRFI P A
Sbjct: 47  LQMVLPSTRFILPQA 61


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,998,197
Number of extensions: 109296
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 12
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)