RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2348
         (131 letters)



>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain
          {Pseudomonas amyloderamosa [TaxId: 32043]}
          Length = 475

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 7/54 (12%)

Query: 15 DLKGAPPSLTYLK-------EILPILAYTGATSLLIEWEDTLPYSLGFDNTNPF 61
             GA    +YL        E LP+       + ++   D      G+   N F
Sbjct: 41 TYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYF 94


>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
           {Escherichia coli [TaxId: 562]}
          Length = 331

 Score = 24.4 bits (52), Expect = 5.7
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 53  LGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQN 105
           L  +  NP        +L    SNG  S+ +  L     + L ++E    RQ 
Sbjct: 44  LKHNPQNPSWADRDRFVL----SNGHGSMLIYSLLHLTGYDLPMEELKNFRQL 92


>d1pfsa_ b.40.4.7 (A:) Gene V protein {Pseudomonas phage Pf3
          [TaxId: 10872]}
          Length = 78

 Score = 23.1 bits (49), Expect = 8.0
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 13/58 (22%)

Query: 4  PSTFKEVLVHLDLKGAPPSLTYLKE-ILPILAYTGATSLLIEWEDTLPYSLGFDNTNP 60
          P TF+E  +HL+ K  P    +  E ++P  +Y             +PY +  +N  P
Sbjct: 21 PYTFQEGFLHLEDKPHPLQCQFFVESVIPAGSY------------QVPYRINVNNGRP 66


>d2ciwa2 a.39.3.1 (A:120-298) Cloroperoxidase {Fungus (Caldariomyces
           fumago) [TaxId: 5474]}
          Length = 179

 Score = 23.6 bits (50), Expect = 8.4
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 47  DTLPYSLGFDNTNPFRETEIFI-----ILAAAESNGLASIP 82
           ++ PY LG+   +P RE E        +LAA+ ++  +S+P
Sbjct: 98  ESFPYHLGWHPPSPAREIEFVTSASSAVLAASVTSTPSSLP 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,858
Number of extensions: 20095
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 5
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)