BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2349
         (164 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3U4H6|HEXDC_MOUSE Hexosaminidase D OS=Mus musculus GN=Hexdc PE=1 SV=1
          Length = 486

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 1   MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDN 57
           M +P+ FK  LVHLDLKGAPP ++YL E+ P+    GA  LLIE+ED  PY         
Sbjct: 1   MSSPTPFKMRLVHLDLKGAPPKVSYLSEVFPLFHALGANGLLIEYEDMFPYEGHLRLLRA 60

Query: 58  TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNAR 117
            + +  +E+  IL  A  + L  IPLV  +  M+FVLK   FA +R+       + P+  
Sbjct: 61  KHAYSPSEVTEILRLARLSELEVIPLVQTFGHMEFVLKHAAFAHLREVALFPNTLNPHEA 120

Query: 118 SSLDLVFKMIGRM 130
            SL LV  MI ++
Sbjct: 121 ESLALVQAMIDQI 133


>sp|Q8WVB3|HEXDC_HUMAN Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3
          Length = 486

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/134 (41%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 1   MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG----FD 56
           M   + F+  LVHLDLKGAPP ++YL EI P+    GA  LLIE+ED  PY  G      
Sbjct: 1   MSGSTPFQMRLVHLDLKGAPPKVSYLSEIFPLFRALGANGLLIEYEDMFPYE-GPLRLLR 59

Query: 57  NTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNA 116
               +  +EI  IL  A  N L  IPLV  +  M+FVLK   FA +R+  +    + P+ 
Sbjct: 60  AKYAYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCTLNPHE 119

Query: 117 RSSLDLVFKMIGRM 130
             SL LV  MI ++
Sbjct: 120 AESLALVGAMIDQV 133


>sp|A6QNR0|HEXDC_BOVIN Hexosaminidase D OS=Bos taurus GN=HEXDC PE=2 SV=2
          Length = 346

 Score = 82.8 bits (203), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 11  LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEIF 67
           LVHLDLKGAPP + YL EI P+    GA  +LIE+ED  PY          + +  +EI 
Sbjct: 3   LVHLDLKGAPPKVCYLSEIFPLFRALGANGILIEYEDMFPYEGHLRLLRAKHAYSPSEIK 62

Query: 68  IILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMI 127
            IL  A  N L  IPLV  +  M+FVLK +  A +R+       + P+   SL LV  MI
Sbjct: 63  EILHLATLNELEVIPLVQTFGHMEFVLKHEALAHLREVARFPNTLNPHKEESLALVTAMI 122

Query: 128 GRM 130
            ++
Sbjct: 123 DQV 125


>sp|O74520|YCPE_SCHPO Uncharacterized membrane protein C663.14c OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=SPCC663.14c PE=3 SV=2
          Length = 687

 Score = 30.8 bits (68), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 21  PSLTYLKEILPILAYTGATSL-----LIEWEDTLPYSLGF 55
           PSL ++ E+L  +A+TGA  +     L+ W     + LGF
Sbjct: 222 PSLQHMGELLQCIAFTGAIGITQPKVLVAWASNFAWILGF 261


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.141    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,195,265
Number of Sequences: 539616
Number of extensions: 2360263
Number of successful extensions: 5865
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5859
Number of HSP's gapped (non-prelim): 5
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)