Query psy2349
Match_columns 164
No_of_seqs 128 out of 1213
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:44:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06565 GH20_GcnA-like Glycosy 100.0 7.1E-49 1.5E-53 329.5 16.6 148 9-158 1-153 (301)
2 cd06569 GH20_Sm-chitobiase-lik 100.0 1E-48 2.2E-53 343.5 16.4 159 3-162 1-229 (445)
3 cd06570 GH20_chitobiase-like_1 100.0 3.8E-48 8.2E-53 326.6 16.4 155 7-163 1-176 (311)
4 cd06562 GH20_HexA_HexB-like Be 100.0 1.1E-47 2.4E-52 327.9 15.4 155 7-163 1-178 (348)
5 cd06563 GH20_chitobiase-like T 100.0 1.3E-47 2.8E-52 328.3 15.2 155 7-163 1-194 (357)
6 PF00728 Glyco_hydro_20: Glyco 100.0 9E-47 2E-51 319.1 8.9 155 7-163 1-185 (351)
7 cd06568 GH20_SpHex_like A subg 100.0 3.3E-44 7.1E-49 304.6 14.4 143 7-151 1-169 (329)
8 cd06564 GH20_DspB_LnbB-like Gl 100.0 9E-44 2E-48 301.1 14.7 142 8-150 1-171 (326)
9 cd02742 GH20_hexosaminidase Be 100.0 1.3E-43 2.7E-48 297.7 13.4 140 9-150 1-162 (303)
10 KOG2499|consensus 100.0 1.8E-41 3.8E-46 294.4 12.4 159 2-163 176-355 (542)
11 COG3525 Chb N-acetyl-beta-hexo 100.0 3.2E-36 6.9E-41 269.3 11.9 160 2-163 256-456 (732)
12 PF02638 DUF187: Glycosyl hydr 98.3 3.1E-05 6.7E-10 65.7 13.6 132 9-141 2-160 (311)
13 PF14871 GHL6: Hypothetical gl 97.6 0.00087 1.9E-08 50.3 10.2 106 27-134 3-124 (132)
14 COG1649 Uncharacterized protei 97.1 0.0095 2.1E-07 52.7 12.3 134 7-141 45-205 (418)
15 PF02449 Glyco_hydro_42: Beta- 97.0 0.007 1.5E-07 52.1 10.2 131 22-160 8-152 (374)
16 PF13200 DUF4015: Putative gly 96.8 0.0099 2.2E-07 50.8 9.1 110 23-132 12-136 (316)
17 PF10566 Glyco_hydro_97: Glyco 96.3 0.014 3.1E-07 48.9 7.0 109 18-130 26-146 (273)
18 PRK09441 cytoplasmic alpha-amy 95.6 0.069 1.5E-06 47.7 8.3 80 11-91 9-107 (479)
19 PRK12313 glycogen branching en 95.1 0.23 5E-06 46.0 10.5 110 20-130 166-297 (633)
20 PF00150 Cellulase: Cellulase 94.9 0.12 2.6E-06 41.6 7.2 73 8-87 9-85 (281)
21 COG0296 GlgB 1,4-alpha-glucan 94.5 0.21 4.5E-06 46.5 8.5 70 21-91 162-240 (628)
22 smart00642 Aamy Alpha-amylase 94.3 0.28 6E-06 37.9 7.6 72 20-92 15-97 (166)
23 KOG0470|consensus 94.2 0.077 1.7E-06 49.8 4.9 116 12-128 235-388 (757)
24 PF00128 Alpha-amylase: Alpha 94.0 0.12 2.7E-06 41.7 5.4 67 23-90 3-77 (316)
25 PLN00196 alpha-amylase; Provis 93.5 0.51 1.1E-05 41.9 8.7 68 23-91 43-118 (428)
26 PF13199 Glyco_hydro_66: Glyco 93.3 0.32 6.9E-06 44.7 7.2 138 2-141 97-264 (559)
27 TIGR02403 trehalose_treC alpha 93.2 0.38 8.3E-06 43.8 7.7 70 21-91 24-101 (543)
28 TIGR02402 trehalose_TreZ malto 93.2 0.9 2E-05 41.4 10.1 69 22-91 109-186 (542)
29 PRK14705 glycogen branching en 93.2 0.9 1.9E-05 45.4 10.6 103 26-130 768-892 (1224)
30 PLN02361 alpha-amylase 93.1 0.57 1.2E-05 41.3 8.3 78 11-90 17-101 (401)
31 TIGR02104 pulA_typeI pullulana 92.9 0.36 7.8E-06 44.5 7.0 67 24-91 164-255 (605)
32 PLN02784 alpha-amylase 92.7 0.75 1.6E-05 44.3 8.9 81 10-91 507-594 (894)
33 PRK05402 glycogen branching en 92.6 0.61 1.3E-05 44.0 8.3 70 20-90 261-340 (726)
34 PF07555 NAGidase: beta-N-acet 92.6 0.94 2E-05 38.6 8.7 72 10-84 1-76 (306)
35 PRK01060 endonuclease IV; Prov 92.6 0.88 1.9E-05 37.1 8.4 61 9-80 3-63 (281)
36 PRK14706 glycogen branching en 92.6 0.48 1E-05 44.2 7.4 70 20-90 163-242 (639)
37 TIGR02100 glgX_debranch glycog 92.4 0.63 1.4E-05 43.7 8.1 101 29-130 189-329 (688)
38 TIGR01515 branching_enzym alph 92.2 0.59 1.3E-05 43.2 7.6 68 23-91 155-232 (613)
39 PRK10785 maltodextrin glucosid 91.8 0.69 1.5E-05 42.6 7.5 67 22-91 177-252 (598)
40 PF01212 Beta_elim_lyase: Beta 91.8 0.91 2E-05 38.2 7.7 66 13-82 97-163 (290)
41 PRK12568 glycogen branching en 90.9 1 2.2E-05 42.8 7.7 71 20-91 265-345 (730)
42 PRK14510 putative bifunctional 90.6 1.4 3E-05 44.1 8.7 103 28-131 191-333 (1221)
43 TIGR02401 trehalose_TreY malto 90.6 1.5 3.2E-05 42.2 8.6 73 18-91 10-91 (825)
44 PRK14582 pgaB outer membrane N 90.4 12 0.00026 35.4 14.2 135 6-148 311-470 (671)
45 smart00518 AP2Ec AP endonuclea 90.4 1.9 4.2E-05 34.9 8.2 60 11-81 3-62 (273)
46 PRK10933 trehalose-6-phosphate 90.3 1.3 2.8E-05 40.5 7.7 69 22-91 31-107 (551)
47 PLN02447 1,4-alpha-glucan-bran 90.1 1.2 2.5E-05 42.5 7.4 108 22-130 248-378 (758)
48 PF02679 ComA: (2R)-phospho-3- 89.8 0.68 1.5E-05 38.3 5.0 27 59-85 108-134 (244)
49 PRK14511 maltooligosyl trehalo 89.8 1.9 4.2E-05 41.7 8.6 73 18-91 14-95 (879)
50 PLN02960 alpha-amylase 89.3 1.5 3.3E-05 42.4 7.5 110 20-130 412-544 (897)
51 PRK10340 ebgA cryptic beta-D-g 89.3 2.1 4.5E-05 42.1 8.6 111 18-147 349-479 (1021)
52 PRK03705 glycogen debranching 89.2 1.8 4E-05 40.5 7.9 101 29-130 184-324 (658)
53 TIGR03849 arch_ComA phosphosul 88.9 1.7 3.7E-05 35.8 6.6 28 59-86 95-122 (237)
54 TIGR02456 treS_nterm trehalose 88.4 2.1 4.6E-05 38.9 7.6 68 20-90 24-101 (539)
55 PRK09505 malS alpha-amylase; R 87.9 2.5 5.4E-05 39.9 7.9 69 22-91 228-318 (683)
56 PF02065 Melibiase: Melibiase; 87.6 2.5 5.3E-05 37.3 7.3 118 20-143 54-191 (394)
57 PF14488 DUF4434: Domain of un 87.6 6.2 0.00013 30.5 8.8 67 19-87 15-88 (166)
58 PF01301 Glyco_hydro_35: Glyco 87.4 0.82 1.8E-05 39.0 4.1 67 22-91 22-90 (319)
59 PF02836 Glyco_hydro_2_C: Glyc 86.8 1.6 3.5E-05 36.2 5.4 110 17-145 29-159 (298)
60 PF05913 DUF871: Bacterial pro 85.9 2.4 5.1E-05 36.9 6.2 64 11-85 3-68 (357)
61 COG1874 LacA Beta-galactosidas 84.6 16 0.00034 34.6 11.2 133 22-161 28-176 (673)
62 cd00452 KDPG_aldolase KDPG and 84.5 2.8 6.1E-05 32.7 5.5 108 22-143 14-151 (190)
63 PRK06552 keto-hydroxyglutarate 84.3 14 0.00031 29.6 9.7 108 22-143 23-163 (213)
64 PRK10150 beta-D-glucuronidase; 84.1 8.9 0.00019 35.2 9.4 54 17-87 306-359 (604)
65 cd01299 Met_dep_hydrolase_A Me 83.5 7.4 0.00016 32.4 8.1 74 21-94 117-190 (342)
66 PF01261 AP_endonuc_2: Xylose 82.5 0.89 1.9E-05 34.6 1.9 64 23-87 70-135 (213)
67 cd06592 GH31_glucosidase_KIAA1 81.6 18 0.0004 30.3 9.7 110 19-130 25-150 (303)
68 cd06593 GH31_xylosidase_YicI Y 81.5 14 0.00029 30.9 8.9 110 20-131 20-147 (308)
69 TIGR03234 OH-pyruv-isom hydrox 81.2 4.2 9.1E-05 32.6 5.5 61 23-84 83-143 (254)
70 PRK14507 putative bifunctional 81.2 8.1 0.00018 40.1 8.5 71 18-91 752-833 (1693)
71 KOG0256|consensus 80.2 14 0.00031 33.1 8.7 66 11-82 197-264 (471)
72 PF01055 Glyco_hydro_31: Glyco 80.2 9.9 0.00021 33.2 7.9 125 5-134 26-170 (441)
73 TIGR01866 cas_Csn2 CRISPR-asso 80.1 5 0.00011 32.6 5.6 64 8-82 133-196 (216)
74 PRK13111 trpA tryptophan synth 79.3 7 0.00015 32.4 6.3 25 61-85 126-150 (258)
75 TIGR00542 hxl6Piso_put hexulos 78.7 3.6 7.8E-05 33.6 4.5 61 23-84 93-153 (279)
76 PRK09856 fructoselysine 3-epim 78.3 10 0.00022 30.6 7.0 62 23-85 89-150 (275)
77 TIGR02102 pullulan_Gpos pullul 78.1 8.8 0.00019 38.3 7.5 109 21-130 477-630 (1111)
78 PF13380 CoA_binding_2: CoA bi 77.8 2.9 6.2E-05 30.2 3.2 53 13-82 55-108 (116)
79 PRK13210 putative L-xylulose 5 77.7 8.6 0.00019 31.1 6.4 58 20-81 12-69 (284)
80 PLN02591 tryptophan synthase 77.5 8.9 0.00019 31.7 6.4 29 61-89 115-144 (250)
81 KOG3698|consensus 77.3 2.3 5E-05 39.6 3.1 66 17-84 26-94 (891)
82 PRK05301 pyrroloquinoline quin 77.3 8.1 0.00018 33.2 6.4 58 18-89 43-100 (378)
83 PRK10076 pyruvate formate lyas 77.0 16 0.00034 29.4 7.6 59 21-81 142-210 (213)
84 TIGR02109 PQQ_syn_pqqE coenzym 76.5 8.3 0.00018 32.7 6.2 58 18-89 34-91 (358)
85 PRK15447 putative protease; Pr 75.5 9 0.00019 32.3 6.0 100 20-126 11-130 (301)
86 cd07944 DRE_TIM_HOA_like 4-hyd 75.1 19 0.00041 29.7 7.8 52 11-75 127-178 (266)
87 PRK08195 4-hyroxy-2-oxovalerat 74.6 23 0.0005 30.4 8.4 53 11-76 133-185 (337)
88 TIGR03586 PseI pseudaminic aci 74.4 8.5 0.00018 33.1 5.7 78 18-95 11-108 (327)
89 COG1168 MalY Bifunctional PLP- 74.2 4.1 8.8E-05 35.9 3.7 25 58-82 172-196 (388)
90 PF01565 FAD_binding_4: FAD bi 74.0 4.3 9.2E-05 29.4 3.3 27 62-90 9-35 (139)
91 COG2100 Predicted Fe-S oxidore 73.7 7.3 0.00016 34.0 5.0 79 12-90 163-269 (414)
92 PLN02607 1-aminocyclopropane-1 73.5 30 0.00065 30.6 9.1 56 21-81 182-237 (447)
93 PF03102 NeuB: NeuB family; I 73.5 12 0.00026 30.7 6.2 66 29-94 1-86 (241)
94 PRK13209 L-xylulose 5-phosphat 72.9 4.8 0.0001 32.8 3.7 59 23-84 98-158 (283)
95 PRK13957 indole-3-glycerol-pho 72.6 15 0.00032 30.5 6.5 38 59-96 133-170 (247)
96 COG0366 AmyA Glycosidases [Car 72.3 17 0.00037 31.7 7.3 67 21-90 26-102 (505)
97 KOG0259|consensus 72.3 4 8.6E-05 36.2 3.2 33 57-90 212-244 (447)
98 CHL00200 trpA tryptophan synth 71.8 13 0.00028 30.9 6.0 48 26-88 108-155 (263)
99 PRK13125 trpA tryptophan synth 71.5 12 0.00025 30.5 5.7 53 24-88 88-140 (244)
100 PLN02877 alpha-amylase/limit d 70.8 15 0.00033 36.1 7.1 27 63-90 465-491 (970)
101 TIGR00587 nfo apurinic endonuc 70.7 22 0.00048 29.2 7.2 60 10-80 3-62 (274)
102 PF12696 TraG-D_C: TraM recogn 70.3 8.2 0.00018 27.9 4.1 71 60-130 12-82 (128)
103 PRK08208 coproporphyrinogen II 69.9 7.9 0.00017 34.1 4.6 32 60-91 173-207 (430)
104 COG0436 Aspartate/tyrosine/aro 69.9 5.1 0.00011 35.0 3.4 25 58-82 177-201 (393)
105 cd03174 DRE_TIM_metallolyase D 69.8 27 0.00058 27.9 7.4 55 12-77 134-188 (265)
106 PRK09997 hydroxypyruvate isome 69.7 7.5 0.00016 31.4 4.1 59 23-84 84-144 (258)
107 cd07943 DRE_TIM_HOA 4-hydroxy- 69.2 31 0.00067 28.2 7.7 45 21-76 138-182 (263)
108 PF07745 Glyco_hydro_53: Glyco 68.7 20 0.00044 30.9 6.7 53 27-85 27-79 (332)
109 PRK00278 trpC indole-3-glycero 68.5 60 0.0013 26.7 9.3 53 29-94 125-177 (260)
110 KOG0462|consensus 68.3 3.3 7.1E-05 38.3 1.9 32 61-92 91-138 (650)
111 TIGR01182 eda Entner-Doudoroff 68.0 27 0.00058 28.0 6.9 74 22-96 18-120 (204)
112 smart00481 POLIIIAc DNA polyme 68.0 17 0.00036 23.1 4.8 47 25-85 16-62 (67)
113 COG3250 LacZ Beta-galactosidas 67.9 56 0.0012 31.6 10.1 109 17-146 314-435 (808)
114 PRK13210 putative L-xylulose 5 67.6 8.3 0.00018 31.2 4.0 61 23-84 93-153 (284)
115 TIGR02631 xylA_Arthro xylose i 67.4 15 0.00034 32.0 5.9 54 25-82 33-86 (382)
116 PRK09856 fructoselysine 3-epim 67.4 20 0.00044 28.9 6.3 51 25-81 14-64 (275)
117 cd00617 Tnase_like Tryptophana 67.1 25 0.00055 31.2 7.2 56 21-82 136-191 (431)
118 PF02679 ComA: (2R)-phospho-3- 67.0 23 0.00051 29.3 6.5 65 4-82 8-72 (244)
119 PRK07998 gatY putative fructos 66.9 16 0.00035 30.8 5.7 26 62-87 113-138 (283)
120 PRK10558 alpha-dehydro-beta-de 66.9 22 0.00048 29.3 6.4 64 29-95 32-111 (256)
121 cd07939 DRE_TIM_NifV Streptomy 65.9 27 0.00058 28.5 6.7 56 21-90 136-191 (259)
122 TIGR03356 BGL beta-galactosida 65.7 24 0.00052 31.2 6.8 62 24-90 54-123 (427)
123 PRK05718 keto-hydroxyglutarate 65.6 19 0.0004 29.0 5.6 75 21-95 24-126 (212)
124 TIGR03569 NeuB_NnaB N-acetylne 65.6 37 0.00081 29.2 7.7 78 18-95 10-107 (329)
125 TIGR03217 4OH_2_O_val_ald 4-hy 65.4 24 0.00052 30.3 6.5 47 19-76 138-184 (333)
126 COG0800 Eda 2-keto-3-deoxy-6-p 65.3 24 0.00052 28.6 6.1 75 21-95 22-124 (211)
127 COG1523 PulA Type II secretory 65.3 22 0.00048 33.7 6.8 67 63-130 264-347 (697)
128 TIGR02103 pullul_strch alpha-1 65.2 20 0.00044 35.0 6.6 27 64-91 404-430 (898)
129 PF00218 IGPS: Indole-3-glycer 65.1 23 0.0005 29.4 6.1 55 29-96 123-177 (254)
130 COG0134 TrpC Indole-3-glycerol 64.9 9.2 0.0002 31.8 3.8 36 60-95 139-174 (254)
131 COG3977 Alanine-alpha-ketoisov 64.9 6.4 0.00014 34.1 2.9 25 57-81 192-216 (417)
132 PRK12677 xylose isomerase; Pro 64.8 20 0.00044 31.3 6.1 52 26-81 33-84 (384)
133 PF00155 Aminotran_1_2: Aminot 64.4 18 0.00039 30.1 5.6 60 18-82 127-186 (363)
134 TIGR02455 TreS_stutzeri trehal 64.3 20 0.00044 33.9 6.2 63 27-91 77-156 (688)
135 cd04724 Tryptophan_synthase_al 64.3 26 0.00056 28.4 6.3 24 63-86 115-138 (242)
136 COG3589 Uncharacterized conser 64.1 22 0.00047 31.0 5.9 56 23-85 15-70 (360)
137 PRK13398 3-deoxy-7-phosphohept 64.1 61 0.0013 26.9 8.6 73 21-96 38-110 (266)
138 PRK13209 L-xylulose 5-phosphat 64.0 26 0.00056 28.4 6.3 53 25-81 22-74 (283)
139 PF07488 Glyco_hydro_67M: Glyc 64.0 70 0.0015 27.6 8.9 92 22-135 55-150 (328)
140 TIGR02668 moaA_archaeal probab 64.0 21 0.00045 29.5 5.8 59 18-89 37-95 (302)
141 TIGR02320 PEP_mutase phosphoen 63.6 89 0.0019 26.3 12.0 122 12-140 81-216 (285)
142 TIGR02313 HpaI-NOT-DapA 2,4-di 63.6 77 0.0017 26.4 9.2 64 21-92 18-84 (294)
143 PRK13238 tnaA tryptophanase/L- 63.5 24 0.00053 31.4 6.5 27 58-84 192-218 (460)
144 TIGR01210 conserved hypothetic 63.5 16 0.00035 30.9 5.1 24 60-83 151-174 (313)
145 TIGR00262 trpA tryptophan synt 63.4 26 0.00057 28.8 6.2 26 61-86 124-149 (256)
146 cd00377 ICL_PEPM Members of th 63.2 61 0.0013 26.4 8.3 77 12-89 72-154 (243)
147 PF03851 UvdE: UV-endonuclease 63.1 23 0.00051 29.7 5.9 56 25-81 46-104 (275)
148 PTZ00372 endonuclease 4-like p 62.7 46 0.001 29.6 7.9 71 9-93 132-202 (413)
149 cd00308 enolase_like Enolase-s 62.2 64 0.0014 25.5 8.2 69 11-84 96-203 (229)
150 PF14542 Acetyltransf_CG: GCN5 61.7 9 0.0002 25.7 2.7 42 58-101 36-77 (78)
151 PRK06015 keto-hydroxyglutarate 61.3 26 0.00056 28.1 5.7 75 21-95 13-115 (201)
152 KOG0464|consensus 61.3 5.2 0.00011 36.2 1.8 30 64-93 74-116 (753)
153 cd00019 AP2Ec AP endonuclease 61.2 42 0.0009 27.2 7.1 21 26-46 12-32 (279)
154 PRK09852 cryptic 6-phospho-bet 61.1 20 0.00044 32.3 5.5 66 24-90 71-141 (474)
155 TIGR01418 PEP_synth phosphoeno 61.0 39 0.00085 32.4 7.7 117 2-130 590-731 (782)
156 TIGR00542 hxl6Piso_put hexulos 60.9 32 0.00069 28.0 6.3 54 24-81 16-69 (279)
157 cd06591 GH31_xylosidase_XylS X 60.6 53 0.0011 27.7 7.8 103 20-129 20-143 (319)
158 PRK15452 putative protease; Pr 60.6 18 0.00038 32.4 5.0 89 33-126 19-133 (443)
159 TIGR00629 uvde UV damage endon 60.5 17 0.00038 31.1 4.8 55 26-81 54-111 (312)
160 TIGR03471 HpnJ hopanoid biosyn 60.4 14 0.00031 32.7 4.5 32 60-91 319-352 (472)
161 COG3505 VirD4 Type IV secretor 60.2 13 0.00029 34.6 4.3 80 63-143 421-501 (596)
162 TIGR00674 dapA dihydrodipicoli 59.8 98 0.0021 25.5 9.4 56 21-84 16-74 (285)
163 KOG4175|consensus 59.5 31 0.00067 28.3 5.7 29 61-90 132-160 (268)
164 PRK12928 lipoyl synthase; Prov 59.1 49 0.0011 27.8 7.2 57 20-81 215-275 (290)
165 TIGR00387 glcD glycolate oxida 58.9 9.9 0.00022 33.3 3.1 23 61-83 5-27 (413)
166 COG1082 IolE Sugar phosphate i 58.6 41 0.00089 26.8 6.5 63 22-84 82-146 (274)
167 COG0277 GlcD FAD/FMN-containin 58.3 11 0.00023 32.8 3.2 25 60-84 38-62 (459)
168 PTZ00372 endonuclease 4-like p 58.1 34 0.00074 30.5 6.3 79 8-86 301-393 (413)
169 PRK05628 coproporphyrinogen II 58.0 19 0.00042 30.9 4.7 33 59-91 139-174 (375)
170 COG3033 TnaA Tryptophanase [Am 57.7 44 0.00096 29.7 6.8 58 21-84 169-226 (471)
171 cd07940 DRE_TIM_IPMS 2-isoprop 57.6 46 0.00099 27.2 6.7 45 21-76 140-184 (268)
172 PRK08636 aspartate aminotransf 57.5 14 0.0003 31.8 3.7 25 57-81 188-212 (403)
173 cd06598 GH31_transferase_CtsZ 57.3 77 0.0017 26.7 8.2 105 20-130 20-150 (317)
174 COG0320 LipA Lipoate synthase 57.3 65 0.0014 27.5 7.5 78 9-91 216-297 (306)
175 cd06603 GH31_GANC_GANAB_alpha 57.2 82 0.0018 26.7 8.4 108 18-130 18-145 (339)
176 PLN02368 alanine transaminase 56.9 14 0.00031 32.3 3.8 27 56-82 222-248 (407)
177 COG1385 Uncharacterized protei 56.9 27 0.0006 28.7 5.2 83 12-96 78-161 (246)
178 PLN02721 threonine aldolase 56.8 73 0.0016 26.2 7.9 58 21-82 118-176 (353)
179 PLN02951 Molybderin biosynthes 56.8 42 0.00091 29.1 6.6 59 18-89 87-146 (373)
180 PF07905 PucR: Purine cataboli 56.7 55 0.0012 23.5 6.3 66 10-91 42-110 (123)
181 PRK03170 dihydrodipicolinate s 56.5 1E+02 0.0022 25.4 8.7 48 20-75 18-65 (292)
182 PRK05942 aspartate aminotransf 56.4 14 0.00031 31.5 3.7 24 58-81 184-207 (394)
183 COG0826 Collagenase and relate 56.4 71 0.0015 27.7 7.9 87 36-126 25-136 (347)
184 smart00857 Resolvase Resolvase 56.2 74 0.0016 22.9 8.0 29 62-90 50-80 (148)
185 COG0656 ARA1 Aldo/keto reducta 56.2 33 0.00071 29.0 5.6 23 60-85 169-191 (280)
186 cd06604 GH31_glucosidase_II_Ma 56.2 83 0.0018 26.7 8.3 109 18-130 18-145 (339)
187 TIGR00433 bioB biotin syntheta 56.1 26 0.00056 28.7 5.1 53 28-83 124-177 (296)
188 COG0159 TrpA Tryptophan syntha 56.0 39 0.00084 28.4 6.0 25 61-85 131-155 (265)
189 TIGR00036 dapB dihydrodipicoli 55.8 50 0.0011 27.2 6.7 24 60-83 101-124 (266)
190 PRK08610 fructose-bisphosphate 55.8 31 0.00067 29.1 5.5 66 23-88 60-142 (286)
191 TIGR00539 hemN_rel putative ox 55.8 28 0.00061 29.8 5.4 32 60-91 132-166 (360)
192 TIGR03542 DAPAT_plant LL-diami 55.8 15 0.00032 31.6 3.6 24 58-81 187-210 (402)
193 TIGR02026 BchE magnesium-proto 55.7 22 0.00047 32.0 4.8 63 27-90 287-351 (497)
194 PRK09082 methionine aminotrans 55.0 14 0.00029 31.6 3.3 24 58-81 177-200 (386)
195 PRK09147 succinyldiaminopimela 54.8 14 0.00031 31.5 3.4 24 58-81 180-203 (396)
196 PRK15014 6-phospho-beta-glucos 54.7 30 0.00064 31.2 5.5 63 25-91 70-140 (477)
197 PF02606 LpxK: Tetraacyldisacc 54.5 30 0.00064 29.6 5.2 47 27-83 240-287 (326)
198 cd07948 DRE_TIM_HCS Saccharomy 54.3 85 0.0018 25.9 7.8 65 10-90 129-193 (262)
199 PLN03059 beta-galactosidase; P 54.3 47 0.001 32.3 6.9 74 21-97 56-139 (840)
200 PRK14581 hmsF outer membrane N 54.1 1.8E+02 0.004 27.6 10.7 122 6-130 311-453 (672)
201 PRK02308 uvsE putative UV dama 53.8 69 0.0015 27.1 7.3 55 26-81 50-108 (303)
202 PRK05957 aspartate aminotransf 53.7 16 0.00034 31.3 3.5 24 58-81 174-197 (389)
203 PLN02231 alanine transaminase 53.5 17 0.00037 33.1 3.8 57 20-81 252-308 (534)
204 PLN02376 1-aminocyclopropane-1 53.4 1.4E+02 0.003 26.9 9.6 55 20-81 180-236 (496)
205 TIGR03128 RuMP_HxlA 3-hexulose 53.3 53 0.0011 25.4 6.2 46 29-88 68-113 (206)
206 PRK07590 L,L-diaminopimelate a 53.2 16 0.00035 31.4 3.5 24 58-81 190-213 (409)
207 cd00950 DHDPS Dihydrodipicolin 53.1 1.2E+02 0.0025 24.9 8.5 23 21-43 18-40 (284)
208 TIGR03852 sucrose_gtfA sucrose 53.0 31 0.00067 31.2 5.3 70 13-85 157-232 (470)
209 cd00019 AP2Ec AP endonuclease 53.0 12 0.00025 30.6 2.4 61 22-84 83-143 (279)
210 PRK13347 coproporphyrinogen II 53.0 20 0.00044 31.8 4.1 33 59-91 183-218 (453)
211 PLN00145 tyrosine/nicotianamin 52.8 17 0.00037 31.8 3.6 24 58-81 204-227 (430)
212 PRK08446 coproporphyrinogen II 52.7 36 0.00078 29.1 5.5 32 60-91 130-164 (350)
213 PRK13361 molybdenum cofactor b 52.6 48 0.0011 28.0 6.2 48 18-77 42-89 (329)
214 PRK12857 fructose-1,6-bisphosp 52.1 42 0.00091 28.3 5.7 26 63-88 114-139 (284)
215 TIGR03538 DapC_gpp succinyldia 52.1 16 0.00036 31.1 3.3 24 58-81 179-202 (393)
216 PRK07366 succinyldiaminopimela 52.1 18 0.00039 30.8 3.6 24 58-81 179-202 (388)
217 TIGR02618 tyr_phenol_ly tyrosi 51.9 40 0.00087 30.4 5.8 57 21-83 154-210 (450)
218 PRK05678 succinyl-CoA syntheta 51.9 39 0.00085 28.5 5.5 57 14-83 66-123 (291)
219 KOG3111|consensus 51.8 34 0.00074 27.7 4.8 43 27-84 77-119 (224)
220 PRK06348 aspartate aminotransf 51.6 19 0.00041 30.7 3.6 25 57-81 175-199 (384)
221 PRK08068 transaminase; Reviewe 51.5 19 0.00041 30.7 3.6 25 57-81 180-204 (389)
222 PRK11230 glycolate oxidase sub 51.4 16 0.00034 33.1 3.2 24 60-83 62-85 (499)
223 PLN02803 beta-amylase 51.4 2E+02 0.0044 26.6 11.3 64 18-86 101-166 (548)
224 COG1306 Uncharacterized conser 51.0 41 0.00088 29.2 5.4 113 18-130 71-205 (400)
225 PLN02417 dihydrodipicolinate s 51.0 1.4E+02 0.003 24.6 9.4 23 21-43 19-41 (280)
226 PRK12677 xylose isomerase; Pro 50.9 23 0.0005 31.0 4.1 73 22-94 112-200 (384)
227 PRK12738 kbaY tagatose-bisphos 50.8 37 0.00079 28.7 5.1 77 12-88 45-139 (286)
228 cd03319 L-Ala-DL-Glu_epimerase 50.7 1.1E+02 0.0024 25.4 8.1 28 11-39 179-206 (316)
229 PRK07709 fructose-bisphosphate 50.7 42 0.0009 28.3 5.4 76 12-88 45-142 (285)
230 PF14386 DUF4417: Domain of un 50.7 28 0.0006 27.8 4.2 80 60-143 93-176 (200)
231 PF01261 AP_endonuc_2: Xylose 50.6 15 0.00033 27.6 2.6 44 30-81 1-44 (213)
232 PRK06855 aminotransferase; Val 50.3 19 0.00042 31.4 3.5 25 57-81 184-208 (433)
233 cd06601 GH31_lyase_GLase GLase 50.3 1.5E+02 0.0032 25.5 8.8 105 11-130 12-119 (332)
234 PRK06464 phosphoenolpyruvate s 50.3 89 0.0019 30.2 8.2 116 2-130 597-738 (795)
235 PRK06358 threonine-phosphate d 50.1 22 0.00047 30.0 3.7 24 58-81 155-178 (354)
236 PRK07309 aromatic amino acid a 50.0 20 0.00042 30.7 3.5 24 58-81 180-203 (391)
237 PF14701 hDGE_amylase: glucano 50.0 77 0.0017 28.4 7.2 74 24-98 22-114 (423)
238 PRK11858 aksA trans-homoaconit 49.9 79 0.0017 27.5 7.2 60 15-90 138-197 (378)
239 PRK08599 coproporphyrinogen II 49.9 33 0.00073 29.4 4.9 33 59-91 131-166 (377)
240 PRK05660 HemN family oxidoredu 49.8 29 0.00063 30.0 4.5 33 59-91 138-173 (378)
241 COG0481 LepA Membrane GTPase L 49.8 11 0.00023 34.6 1.9 29 64-92 43-89 (603)
242 PRK06108 aspartate aminotransf 49.8 19 0.00042 30.2 3.4 24 58-81 172-195 (382)
243 PRK07084 fructose-bisphosphate 49.7 44 0.00095 28.8 5.5 25 64-88 126-150 (321)
244 cd07941 DRE_TIM_LeuA3 Desulfob 49.7 62 0.0013 26.7 6.3 44 22-76 149-192 (273)
245 cd07937 DRE_TIM_PC_TC_5S Pyruv 49.6 63 0.0014 26.7 6.4 47 19-76 144-190 (275)
246 PLN02805 D-lactate dehydrogena 49.5 17 0.00037 33.5 3.1 23 60-82 140-162 (555)
247 cd01126 TraG_VirD4 The TraG/Tr 49.5 21 0.00045 30.7 3.5 72 62-133 277-349 (384)
248 PF06080 DUF938: Protein of un 49.5 47 0.001 26.8 5.3 68 21-89 115-196 (204)
249 PRK06207 aspartate aminotransf 49.3 22 0.00048 30.6 3.8 25 57-81 191-215 (405)
250 PLN02656 tyrosine transaminase 49.2 21 0.00046 30.8 3.6 24 58-81 183-206 (409)
251 PLN02187 rooty/superroot1 49.2 22 0.00048 31.5 3.8 24 58-81 218-241 (462)
252 COG1217 TypA Predicted membran 49.2 6.9 0.00015 35.8 0.5 21 72-92 48-81 (603)
253 COG1313 PflX Uncharacterized F 49.1 44 0.00096 28.7 5.3 54 27-82 274-333 (335)
254 PRK09440 avtA valine--pyruvate 49.1 21 0.00046 30.6 3.6 25 57-81 192-216 (416)
255 PRK07337 aminotransferase; Val 49.1 23 0.0005 30.1 3.8 24 58-81 177-200 (388)
256 PRK05839 hypothetical protein; 49.1 21 0.00046 30.3 3.6 24 58-81 169-192 (374)
257 PRK07681 aspartate aminotransf 49.1 22 0.00047 30.5 3.6 24 58-81 180-203 (399)
258 PTZ00376 aspartate aminotransf 48.9 23 0.0005 30.5 3.8 24 58-81 190-213 (404)
259 PTZ00377 alanine aminotransfer 48.9 23 0.0005 31.4 3.8 57 20-81 199-255 (481)
260 COG2008 GLY1 Threonine aldolas 48.9 16 0.00034 31.8 2.6 23 58-80 144-166 (342)
261 PRK07379 coproporphyrinogen II 48.6 36 0.00078 29.7 5.0 32 59-90 146-180 (400)
262 PF09183 DUF1947: Domain of un 48.6 11 0.00025 24.9 1.4 25 58-82 2-27 (65)
263 PF00682 HMGL-like: HMGL-like 48.4 42 0.00092 26.6 5.0 31 60-90 133-163 (237)
264 PRK13604 luxD acyl transferase 48.3 1.4E+02 0.0031 25.5 8.3 73 16-91 43-117 (307)
265 PRK09276 LL-diaminopimelate am 48.3 24 0.00052 29.9 3.8 24 58-81 180-203 (385)
266 PRK08960 hypothetical protein; 48.2 24 0.00052 30.0 3.7 26 56-81 177-202 (387)
267 TIGR01019 sucCoAalpha succinyl 48.1 51 0.0011 27.7 5.6 55 14-81 64-118 (286)
268 PRK04296 thymidine kinase; Pro 47.9 23 0.00049 27.5 3.3 26 58-83 87-112 (190)
269 TIGR00089 RNA modification enz 47.9 34 0.00074 30.0 4.7 32 60-91 270-305 (429)
270 PLN02450 1-aminocyclopropane-1 47.8 21 0.00044 31.8 3.3 24 58-81 205-228 (468)
271 PRK09525 lacZ beta-D-galactosi 47.8 66 0.0014 31.9 7.0 108 18-143 365-489 (1027)
272 PRK11145 pflA pyruvate formate 47.7 88 0.0019 24.9 6.8 22 59-80 223-244 (246)
273 COG2730 BglC Endoglucanase [Ca 47.6 49 0.0011 29.0 5.7 55 26-83 75-135 (407)
274 PLN00143 tyrosine/nicotianamin 47.6 24 0.00053 30.5 3.7 25 57-81 183-207 (409)
275 PRK13355 bifunctional HTH-doma 47.4 24 0.00052 31.6 3.8 24 58-81 295-318 (517)
276 PRK04302 triosephosphate isome 47.2 1.3E+02 0.0028 23.9 7.6 34 60-93 97-130 (223)
277 PLN02460 indole-3-glycerol-pho 47.2 45 0.00096 29.0 5.2 85 11-96 120-249 (338)
278 PRK06225 aspartate aminotransf 47.1 23 0.0005 30.0 3.5 25 58-82 171-195 (380)
279 PRK07315 fructose-bisphosphate 47.1 57 0.0012 27.5 5.8 63 23-87 60-140 (293)
280 PRK14017 galactonate dehydrata 47.1 1.1E+02 0.0023 26.4 7.6 69 11-84 179-286 (382)
281 PRK09265 aminotransferase AlaT 47.1 25 0.00055 30.1 3.7 24 58-81 182-205 (404)
282 PRK11183 D-lactate dehydrogena 47.0 21 0.00045 33.1 3.2 25 60-84 45-69 (564)
283 cd04726 KGPDC_HPS 3-Keto-L-gul 47.0 1.2E+02 0.0026 23.1 7.3 53 29-95 69-124 (202)
284 PF01116 F_bP_aldolase: Fructo 46.9 50 0.0011 27.8 5.4 62 11-88 77-138 (287)
285 TIGR03537 DapC succinyldiamino 46.9 25 0.00054 29.5 3.6 24 58-81 150-173 (350)
286 PRK12999 pyruvate carboxylase; 46.9 60 0.0013 32.6 6.6 64 13-90 680-743 (1146)
287 TIGR03540 DapC_direct LL-diami 46.8 23 0.00051 30.0 3.4 24 58-81 178-201 (383)
288 cd01019 ZnuA Zinc binding prot 46.2 51 0.0011 27.3 5.3 27 56-82 207-233 (286)
289 PF00232 Glyco_hydro_1: Glycos 46.2 52 0.0011 29.2 5.7 64 24-91 58-129 (455)
290 PRK05904 coproporphyrinogen II 45.8 38 0.00082 29.2 4.6 64 27-91 103-169 (353)
291 cd07944 DRE_TIM_HOA_like 4-hyd 45.8 1.1E+02 0.0023 25.2 7.2 30 61-90 135-164 (266)
292 TIGR03470 HpnH hopanoid biosyn 45.8 88 0.0019 26.4 6.7 19 22-40 176-194 (318)
293 PRK12414 putative aminotransfe 45.6 24 0.00053 30.1 3.4 24 58-81 176-199 (384)
294 PRK09257 aromatic amino acid a 45.6 28 0.00061 29.8 3.8 25 58-82 186-210 (396)
295 PRK08912 hypothetical protein; 45.4 24 0.00052 30.0 3.3 24 58-81 173-196 (387)
296 PF04055 Radical_SAM: Radical 45.2 32 0.0007 24.4 3.6 51 27-79 90-142 (166)
297 PF02534 T4SS-DNA_transf: Type 45.2 34 0.00074 30.0 4.3 73 62-134 317-391 (469)
298 smart00812 Alpha_L_fucos Alpha 45.1 2.1E+02 0.0046 25.0 9.3 98 27-134 84-190 (384)
299 PRK07683 aminotransferase A; V 45.0 25 0.00055 30.0 3.4 24 58-81 175-198 (387)
300 PRK07865 N-succinyldiaminopime 45.0 29 0.00063 29.2 3.7 24 58-81 162-185 (364)
301 cd03321 mandelate_racemase Man 44.9 1.3E+02 0.0027 25.7 7.7 29 10-39 187-215 (355)
302 PRK05764 aspartate aminotransf 44.8 28 0.0006 29.5 3.6 25 58-82 178-202 (393)
303 cd07939 DRE_TIM_NifV Streptomy 44.8 1.2E+02 0.0026 24.6 7.3 33 59-91 134-166 (259)
304 TIGR01520 FruBisAldo_II_A fruc 44.7 69 0.0015 28.0 6.0 69 10-88 102-177 (357)
305 PRK08175 aminotransferase; Val 44.7 29 0.00062 29.7 3.7 24 58-81 178-201 (395)
306 TIGR02617 tnaA_trp_ase tryptop 44.3 57 0.0012 29.6 5.6 57 20-82 166-222 (467)
307 PRK06425 histidinol-phosphate 44.3 30 0.00065 28.8 3.7 24 58-81 136-159 (332)
308 cd07938 DRE_TIM_HMGL 3-hydroxy 44.0 1E+02 0.0022 25.6 6.7 44 22-76 147-190 (274)
309 TIGR03849 arch_ComA phosphosul 44.0 74 0.0016 26.2 5.8 60 19-90 7-66 (237)
310 PLN02801 beta-amylase 43.9 2.6E+02 0.0057 25.7 11.2 64 18-86 31-96 (517)
311 TIGR01264 tyr_amTase_E tyrosin 43.9 31 0.00067 29.5 3.8 24 58-81 182-205 (401)
312 COG1809 (2R)-phospho-3-sulfola 43.7 69 0.0015 26.5 5.5 66 20-85 56-140 (258)
313 PRK09936 hypothetical protein; 43.6 1.2E+02 0.0027 25.8 7.2 72 6-83 18-91 (296)
314 PRK14340 (dimethylallyl)adenos 43.4 42 0.0009 29.9 4.6 64 27-91 245-314 (445)
315 TIGR01140 L_thr_O3P_dcar L-thr 43.4 28 0.0006 29.0 3.3 24 58-81 139-162 (330)
316 PRK07777 aminotransferase; Val 43.4 28 0.00062 29.5 3.4 25 58-82 173-197 (387)
317 PRK04147 N-acetylneuraminate l 43.4 1.9E+02 0.0041 23.9 9.9 23 21-43 21-44 (293)
318 PLN00175 aminotransferase fami 43.2 31 0.00068 29.9 3.7 24 58-81 201-224 (413)
319 PRK07114 keto-hydroxyglutarate 43.2 55 0.0012 26.6 4.9 109 21-143 24-166 (222)
320 PRK06294 coproporphyrinogen II 43.0 48 0.001 28.6 4.8 33 59-91 134-169 (370)
321 PF11080 DUF2622: Protein of u 43.0 57 0.0012 23.2 4.3 69 21-90 18-89 (96)
322 PRK09148 aminotransferase; Val 42.9 31 0.00067 29.7 3.6 25 57-81 178-202 (405)
323 PRK09195 gatY tagatose-bisphos 42.8 62 0.0013 27.3 5.3 25 64-88 115-139 (284)
324 cd03318 MLE Muconate Lactonizi 42.7 1.3E+02 0.0028 25.6 7.4 69 10-83 189-296 (365)
325 TIGR01370 cysRS possible cyste 42.7 62 0.0013 27.7 5.4 65 12-77 136-204 (315)
326 PRK07324 transaminase; Validat 42.7 34 0.00074 29.1 3.8 25 58-82 167-191 (373)
327 PF00290 Trp_syntA: Tryptophan 42.7 39 0.00084 28.1 4.0 46 26-86 104-149 (259)
328 PLN03244 alpha-amylase; Provis 42.6 60 0.0013 31.6 5.6 71 59-130 436-519 (872)
329 COG0050 TufB GTPases - transla 42.6 16 0.00035 31.6 1.8 21 73-93 56-89 (394)
330 PF13204 DUF4038: Protein of u 42.6 2E+02 0.0043 24.0 10.9 68 21-89 27-112 (289)
331 PRK07568 aspartate aminotransf 42.6 31 0.00068 29.2 3.6 24 58-81 176-199 (397)
332 TIGR01265 tyr_nico_aTase tyros 42.5 34 0.00073 29.4 3.8 24 58-81 183-206 (403)
333 PRK09249 coproporphyrinogen II 42.5 44 0.00095 29.6 4.6 32 60-91 183-217 (453)
334 smart00729 Elp3 Elongator prot 42.4 46 0.00099 24.7 4.2 16 62-77 134-149 (216)
335 cd03174 DRE_TIM_metallolyase D 42.3 1.3E+02 0.0028 23.9 7.0 59 23-90 114-172 (265)
336 PRK08354 putative aminotransfe 42.3 31 0.00068 28.4 3.5 25 57-81 130-154 (311)
337 PRK05835 fructose-bisphosphate 42.3 70 0.0015 27.4 5.6 70 19-88 54-139 (307)
338 PTZ00433 tyrosine aminotransfe 42.2 31 0.00068 29.7 3.6 24 58-81 191-214 (412)
339 KOG1232|consensus 42.2 17 0.00037 32.4 1.9 84 60-143 96-192 (511)
340 TIGR03239 GarL 2-dehydro-3-deo 42.2 98 0.0021 25.4 6.3 65 29-96 25-105 (249)
341 PRK06290 aspartate aminotransf 42.1 31 0.00068 30.0 3.6 24 58-81 193-216 (410)
342 cd01127 TrwB Bacterial conjuga 42.1 35 0.00077 29.8 3.9 68 63-130 285-352 (410)
343 PRK14325 (dimethylallyl)adenos 42.0 40 0.00087 29.7 4.2 32 60-91 280-315 (444)
344 PRK13802 bifunctional indole-3 42.0 63 0.0014 30.8 5.7 38 59-96 142-179 (695)
345 cd01993 Alpha_ANH_like_II This 42.0 1.4E+02 0.0031 22.1 8.4 81 6-90 29-115 (185)
346 cd00331 IGPS Indole-3-glycerol 41.9 1.4E+02 0.003 23.3 7.0 36 60-95 104-139 (217)
347 TIGR01211 ELP3 histone acetylt 41.8 48 0.001 30.4 4.8 76 10-90 193-270 (522)
348 PRK13398 3-deoxy-7-phosphohept 41.7 1.8E+02 0.004 24.1 7.9 64 11-75 198-261 (266)
349 TIGR02666 moaA molybdenum cofa 41.6 76 0.0017 26.6 5.8 26 18-43 40-65 (334)
350 TIGR03539 DapC_actino succinyl 41.5 34 0.00073 28.8 3.6 24 58-81 156-179 (357)
351 PRK13897 type IV secretion sys 41.4 31 0.00068 32.2 3.6 68 63-130 421-488 (606)
352 cd06502 TA_like Low-specificit 41.2 32 0.00068 28.2 3.3 25 58-82 140-164 (338)
353 TIGR02252 DREG-2 REG-2-like, H 41.0 69 0.0015 24.3 5.0 78 64-143 108-185 (203)
354 PRK13397 3-deoxy-7-phosphohept 41.0 2E+02 0.0044 23.8 8.0 70 21-95 26-97 (250)
355 KOG4730|consensus 40.7 28 0.0006 31.6 3.0 30 59-90 55-84 (518)
356 KOG0257|consensus 40.7 29 0.00063 30.9 3.1 25 58-82 186-210 (420)
357 cd00408 DHDPS-like Dihydrodipi 40.7 2E+02 0.0043 23.4 9.5 57 20-84 14-73 (281)
358 PRK06107 aspartate aminotransf 40.6 31 0.00067 29.6 3.3 25 58-82 180-205 (402)
359 PF03754 DUF313: Domain of unk 40.5 63 0.0014 23.6 4.4 59 22-81 3-77 (114)
360 cd07937 DRE_TIM_PC_TC_5S Pyruv 40.5 1.3E+02 0.0028 24.9 6.8 48 24-84 91-138 (275)
361 PF07745 Glyco_hydro_53: Glyco 40.4 1.6E+02 0.0035 25.4 7.6 50 19-68 53-106 (332)
362 PF09711 Cas_Csn2: CRISPR-asso 40.4 32 0.00069 27.3 3.0 25 58-82 140-164 (188)
363 PRK07094 biotin synthase; Prov 40.4 50 0.0011 27.5 4.5 31 60-90 161-193 (323)
364 PF13394 Fer4_14: 4Fe-4S singl 40.4 42 0.0009 23.4 3.4 65 18-91 26-92 (119)
365 TIGR00538 hemN oxygen-independ 40.4 42 0.00091 29.8 4.1 32 60-91 183-217 (455)
366 TIGR02319 CPEP_Pphonmut carbox 40.4 2.2E+02 0.0048 24.1 8.3 113 11-130 79-200 (294)
367 PRK07550 hypothetical protein; 40.3 36 0.00077 28.9 3.6 24 58-81 177-200 (386)
368 PF13378 MR_MLE_C: Enolase C-t 40.3 34 0.00075 23.7 3.0 23 63-85 32-54 (111)
369 cd06602 GH31_MGAM_SI_GAA This 40.2 2.3E+02 0.0051 24.1 8.9 114 19-133 19-154 (339)
370 PF07071 DUF1341: Protein of u 40.0 1.4E+02 0.003 24.4 6.5 46 26-82 137-182 (218)
371 PRK05692 hydroxymethylglutaryl 39.8 98 0.0021 25.9 6.1 44 22-76 153-196 (287)
372 cd00954 NAL N-Acetylneuraminic 39.8 2.1E+02 0.0046 23.5 10.1 23 21-43 18-41 (288)
373 PLN02428 lipoic acid synthase 39.8 1.9E+02 0.0041 25.2 8.0 76 11-91 252-331 (349)
374 PRK08056 threonine-phosphate d 39.7 38 0.00083 28.4 3.7 24 58-81 156-179 (356)
375 cd03770 SR_TndX_transposase Se 39.7 1.5E+02 0.0032 21.7 7.5 30 61-90 52-83 (140)
376 PRK08185 hypothetical protein; 39.6 84 0.0018 26.5 5.6 25 64-91 109-133 (283)
377 PRK14327 (dimethylallyl)adenos 39.6 52 0.0011 30.0 4.7 32 60-91 343-378 (509)
378 PRK05664 threonine-phosphate d 39.6 40 0.00087 28.1 3.7 24 58-81 138-161 (330)
379 cd07943 DRE_TIM_HOA 4-hydroxy- 39.6 1.6E+02 0.0035 23.9 7.2 32 59-90 136-167 (263)
380 TIGR02090 LEU1_arch isopropylm 39.6 1.6E+02 0.0034 25.4 7.5 61 14-90 133-193 (363)
381 PRK05799 coproporphyrinogen II 39.5 64 0.0014 27.6 5.1 63 28-91 100-165 (374)
382 cd07948 DRE_TIM_HCS Saccharomy 39.5 1.5E+02 0.0032 24.5 7.0 54 27-91 115-168 (262)
383 PRK14465 ribosomal RNA large s 39.4 1.9E+02 0.0041 25.0 7.9 25 61-85 268-294 (342)
384 PRK11320 prpB 2-methylisocitra 39.2 2.4E+02 0.0051 23.9 8.4 114 11-130 80-201 (292)
385 cd07945 DRE_TIM_CMS Leptospira 39.2 1.4E+02 0.003 24.9 6.9 48 22-80 145-194 (280)
386 PLN02397 aspartate transaminas 38.8 41 0.00089 29.3 3.8 24 58-81 208-231 (423)
387 TIGR03239 GarL 2-dehydro-3-deo 38.8 75 0.0016 26.1 5.1 66 10-75 35-108 (249)
388 cd01017 AdcA Metal binding pro 38.8 81 0.0018 25.9 5.4 25 57-81 200-224 (282)
389 PRK09545 znuA high-affinity zi 38.7 75 0.0016 26.8 5.2 27 56-82 231-257 (311)
390 cd07265 2_3_CTD_N N-terminal d 38.6 44 0.00096 23.0 3.3 30 60-89 69-100 (122)
391 cd09013 BphC-JF8_N_like N-term 38.5 39 0.00084 23.3 3.0 32 60-91 70-101 (121)
392 PRK08207 coproporphyrinogen II 38.5 51 0.0011 29.8 4.4 32 60-91 301-335 (488)
393 PRK12737 gatY tagatose-bisphos 38.5 78 0.0017 26.7 5.3 77 11-88 44-139 (284)
394 PRK14335 (dimethylallyl)adenos 38.4 58 0.0013 29.0 4.7 32 60-91 289-324 (455)
395 PRK07682 hypothetical protein; 38.4 37 0.0008 28.7 3.4 24 58-81 168-191 (378)
396 COG0794 GutQ Predicted sugar p 38.3 96 0.0021 25.0 5.5 61 27-89 55-125 (202)
397 PF00682 HMGL-like: HMGL-like 38.2 89 0.0019 24.7 5.4 59 19-90 132-190 (237)
398 cd03770 SR_TndX_transposase Se 38.2 25 0.00053 25.9 2.0 40 63-102 21-60 (140)
399 cd03322 rpsA The starvation se 38.2 1.9E+02 0.004 24.8 7.7 69 11-84 165-272 (361)
400 PF04476 DUF556: Protein of un 38.1 91 0.002 25.7 5.4 48 28-80 135-183 (235)
401 PLN02849 beta-glucosidase 38.0 92 0.002 28.4 6.0 63 24-91 79-149 (503)
402 PRK14331 (dimethylallyl)adenos 37.9 48 0.0011 29.2 4.1 31 60-90 276-310 (437)
403 TIGR01678 FAD_lactone_ox sugar 37.8 35 0.00076 30.4 3.2 29 60-90 21-49 (438)
404 TIGR02759 TraD_Ftype type IV c 37.6 46 0.001 30.7 4.0 68 63-130 422-489 (566)
405 cd03327 MR_like_2 Mandelate ra 37.6 1.7E+02 0.0036 24.8 7.2 68 11-83 173-279 (341)
406 cd04795 SIS SIS domain. SIS (S 37.5 39 0.00085 21.8 2.8 24 59-83 57-80 (87)
407 PRK06801 hypothetical protein; 37.3 1.1E+02 0.0024 25.8 6.0 69 19-88 55-139 (286)
408 PRK09427 bifunctional indole-3 37.3 45 0.00098 30.0 3.8 37 60-96 142-178 (454)
409 PF00834 Ribul_P_3_epim: Ribul 37.1 51 0.0011 26.2 3.8 23 64-86 92-114 (201)
410 TIGR01677 pln_FAD_oxido plant- 37.1 36 0.00078 31.4 3.2 30 60-90 38-67 (557)
411 PF03659 Glyco_hydro_71: Glyco 37.1 1.8E+02 0.004 25.5 7.5 58 20-87 13-70 (386)
412 TIGR02826 RNR_activ_nrdG3 anae 37.0 1.5E+02 0.0031 22.3 6.1 55 18-89 43-97 (147)
413 PF13353 Fer4_12: 4Fe-4S singl 37.0 89 0.0019 22.2 4.8 50 20-81 35-88 (139)
414 cd00951 KDGDH 5-dehydro-4-deox 36.9 2.4E+02 0.0052 23.3 8.9 57 20-84 17-76 (289)
415 PRK09589 celA 6-phospho-beta-g 36.8 79 0.0017 28.5 5.3 63 24-90 67-137 (476)
416 PRK13237 tyrosine phenol-lyase 36.8 90 0.0019 28.3 5.6 55 21-84 161-218 (460)
417 TIGR03234 OH-pyruv-isom hydrox 36.5 66 0.0014 25.6 4.4 42 26-82 16-57 (254)
418 TIGR02311 HpaI 2,4-dihydroxyhe 36.5 1.4E+02 0.003 24.4 6.4 21 28-48 24-44 (249)
419 PRK14326 (dimethylallyl)adenos 36.4 57 0.0012 29.5 4.4 32 60-91 288-323 (502)
420 PRK10128 2-keto-3-deoxy-L-rham 36.4 1.4E+02 0.003 24.9 6.3 56 29-95 31-110 (267)
421 PF12926 MOZART2: Mitotic-spin 36.3 23 0.0005 24.8 1.5 38 55-95 17-54 (88)
422 PF00701 DHDPS: Dihydrodipicol 36.2 2.4E+02 0.0052 23.1 8.1 23 21-43 19-41 (289)
423 PF13727 CoA_binding_3: CoA-bi 36.2 59 0.0013 23.7 3.9 44 24-80 128-171 (175)
424 cd04885 ACT_ThrD-I Tandem C-te 36.2 90 0.002 19.7 4.3 57 23-80 9-66 (68)
425 PF01408 GFO_IDH_MocA: Oxidore 36.1 42 0.00091 23.2 2.9 23 59-81 95-117 (120)
426 PF04308 DUF458: Protein of un 36.1 56 0.0012 24.9 3.7 30 11-40 97-126 (144)
427 TIGR02666 moaA molybdenum cofa 36.1 2E+02 0.0043 24.1 7.5 20 27-46 102-121 (334)
428 cd08346 PcpA_N_like N-terminal 36.0 15 0.00033 25.0 0.5 24 62-85 83-106 (126)
429 TIGR02668 moaA_archaeal probab 36.0 1.1E+02 0.0024 25.1 5.8 45 37-81 8-60 (302)
430 PRK14334 (dimethylallyl)adenos 35.9 52 0.0011 29.1 4.0 32 59-90 267-302 (440)
431 PF01297 TroA: Periplasmic sol 35.7 84 0.0018 25.2 5.0 38 56-93 178-216 (256)
432 KOG3257|consensus 35.6 23 0.00049 27.6 1.4 18 66-83 141-158 (168)
433 cd03768 SR_ResInv Serine Recom 35.5 1.5E+02 0.0033 20.6 7.4 29 62-90 41-69 (126)
434 COG2221 DsrA Dissimilatory sul 35.5 1.6E+02 0.0035 25.3 6.7 56 18-80 39-94 (317)
435 PLN02746 hydroxymethylglutaryl 35.4 1.2E+02 0.0027 26.3 6.1 57 21-90 194-250 (347)
436 TIGR01235 pyruv_carbox pyruvat 35.1 1.2E+02 0.0026 30.6 6.7 63 14-90 679-741 (1143)
437 TIGR03365 Bsubt_queE 7-cyano-7 35.0 1.2E+02 0.0025 24.5 5.6 56 21-90 56-111 (238)
438 TIGR01676 GLDHase galactonolac 35.0 39 0.00085 31.1 3.1 30 60-91 68-97 (541)
439 KOG2741|consensus 34.9 43 0.00094 29.2 3.2 25 60-84 106-130 (351)
440 COG1137 YhbG ABC-type (unclass 34.9 1.2E+02 0.0025 25.1 5.5 24 58-81 170-193 (243)
441 PRK09593 arb 6-phospho-beta-gl 34.8 93 0.002 28.1 5.5 64 24-91 73-144 (478)
442 PRK13399 fructose-1,6-bisphosp 34.6 1.5E+02 0.0034 25.7 6.6 76 12-87 45-146 (347)
443 COG1167 ARO8 Transcriptional r 34.6 1.9E+02 0.0041 25.7 7.4 63 18-90 210-272 (459)
444 COG2200 Rtn c-di-GMP phosphodi 34.4 1.9E+02 0.004 23.5 6.8 36 60-95 189-225 (256)
445 PRK13361 molybdenum cofactor b 34.3 1.1E+02 0.0025 25.7 5.7 45 37-81 12-65 (329)
446 cd01335 Radical_SAM Radical SA 34.3 77 0.0017 23.0 4.2 12 25-36 60-71 (204)
447 TIGR02660 nifV_homocitr homoci 34.3 1.5E+02 0.0033 25.5 6.6 48 22-80 140-188 (365)
448 PRK09989 hypothetical protein; 34.3 55 0.0012 26.3 3.6 59 23-84 84-144 (258)
449 cd05014 SIS_Kpsf KpsF-like pro 34.1 45 0.00097 23.4 2.8 28 63-90 60-87 (128)
450 PRK05692 hydroxymethylglutaryl 34.1 2.3E+02 0.0049 23.7 7.4 59 26-91 122-182 (287)
451 COG2723 BglB Beta-glucosidase/ 34.0 1.6E+02 0.0035 26.7 6.8 62 25-90 60-129 (460)
452 TIGR01531 glyc_debranch glycog 34.0 1.3E+02 0.0029 31.1 6.7 74 24-98 132-222 (1464)
453 TIGR01521 FruBisAldo_II_B fruc 34.0 1.5E+02 0.0032 25.9 6.3 76 12-87 43-144 (347)
454 cd03325 D-galactonate_dehydrat 34.0 2.1E+02 0.0046 24.3 7.4 73 11-84 178-285 (352)
455 KOG0560|consensus 33.8 1.1E+02 0.0024 28.3 5.6 36 7-44 423-458 (638)
456 PRK07998 gatY putative fructos 33.8 2E+02 0.0044 24.2 7.0 31 9-39 98-130 (283)
457 COG2179 Predicted hydrolase of 33.8 1.3E+02 0.0029 23.7 5.4 50 30-85 20-70 (175)
458 PRK13850 type IV secretion sys 33.8 53 0.0012 31.1 3.9 69 62-130 403-471 (670)
459 PTZ00413 lipoate synthase; Pro 33.7 1.9E+02 0.0041 25.7 7.0 69 21-91 307-379 (398)
460 PRK13905 murB UDP-N-acetylenol 33.6 45 0.00097 27.9 3.1 23 60-82 37-59 (298)
461 cd05017 SIS_PGI_PMI_1 The memb 33.6 47 0.001 23.5 2.8 21 64-84 57-77 (119)
462 PF14883 GHL13: Hypothetical g 33.6 3.1E+02 0.0066 23.5 10.4 102 24-130 17-131 (294)
463 PRK08363 alanine aminotransfer 33.5 53 0.0012 28.0 3.6 24 58-81 180-203 (398)
464 cd07938 DRE_TIM_HMGL 3-hydroxy 33.5 2.7E+02 0.0058 23.0 7.7 60 25-91 115-176 (274)
465 PRK12330 oxaloacetate decarbox 33.5 1.8E+02 0.004 26.6 7.1 47 19-76 150-196 (499)
466 PRK14042 pyruvate carboxylase 33.4 1.4E+02 0.0031 27.9 6.5 59 18-90 148-206 (596)
467 PF11432 DUF3197: Protein of u 33.1 31 0.00067 25.1 1.7 38 62-99 58-95 (113)
468 TIGR02317 prpB methylisocitrat 33.0 3E+02 0.0065 23.2 8.4 114 11-130 75-196 (285)
469 TIGR00190 thiC thiamine biosyn 33.0 33 0.00072 30.6 2.2 29 60-90 233-267 (423)
470 TIGR02717 AcCoA-syn-alpha acet 33.0 1.2E+02 0.0027 26.9 5.9 66 14-88 65-131 (447)
471 cd00953 KDG_aldolase KDG (2-ke 32.9 2.8E+02 0.006 22.8 8.9 57 20-84 16-72 (279)
472 PLN02389 biotin synthase 32.6 1.5E+02 0.0032 26.0 6.2 21 62-82 211-231 (379)
473 PRK13700 conjugal transfer pro 32.5 68 0.0015 30.7 4.3 68 63-130 433-500 (732)
474 TIGR01579 MiaB-like-C MiaB-lik 32.5 80 0.0017 27.5 4.6 32 60-91 269-304 (414)
475 PLN02672 methionine S-methyltr 32.5 51 0.0011 33.0 3.6 24 58-81 843-866 (1082)
476 PRK08361 aspartate aminotransf 32.4 56 0.0012 27.8 3.6 24 58-81 180-203 (391)
477 KOG0465|consensus 32.3 20 0.00044 33.7 0.8 47 114-161 195-244 (721)
478 PRK12436 UDP-N-acetylenolpyruv 32.3 48 0.001 28.0 3.0 23 60-82 43-65 (305)
479 PLN02858 fructose-bisphosphate 32.1 1E+02 0.0022 31.7 5.8 25 64-88 1210-1234(1378)
480 COG3280 TreY Maltooligosyl tre 32.1 1.5E+02 0.0032 28.9 6.4 72 18-92 13-95 (889)
481 cd00609 AAT_like Aspartate ami 31.9 57 0.0012 26.4 3.4 24 58-81 146-169 (350)
482 cd07940 DRE_TIM_IPMS 2-isoprop 31.9 2.3E+02 0.005 23.1 7.0 57 24-91 114-170 (268)
483 PF00034 Cytochrom_C: Cytochro 31.9 50 0.0011 20.9 2.6 17 60-76 74-90 (91)
484 PTZ00445 p36-lilke protein; Pr 31.9 1.2E+02 0.0026 24.8 5.1 61 20-81 25-95 (219)
485 PRK09057 coproporphyrinogen II 31.8 93 0.002 26.9 4.8 63 28-91 105-169 (380)
486 TIGR00531 BCCP acetyl-CoA carb 31.8 81 0.0018 24.0 4.0 27 21-47 1-27 (156)
487 cd01137 PsaA Metal binding pro 31.6 95 0.0021 25.7 4.7 31 57-87 206-237 (287)
488 PRK15447 putative protease; Pr 31.6 3E+02 0.0065 23.0 7.8 94 18-129 42-152 (301)
489 cd06543 GH18_PF-ChiA-like PF-C 31.5 42 0.00091 28.3 2.6 23 59-81 235-257 (294)
490 TIGR02351 thiH thiazole biosyn 31.4 2.4E+02 0.0052 24.3 7.3 52 16-76 98-149 (366)
491 PRK10736 hypothetical protein; 31.4 92 0.002 27.4 4.7 72 22-94 56-158 (374)
492 TIGR00510 lipA lipoate synthas 31.4 3.2E+02 0.007 23.1 8.2 60 20-81 218-278 (302)
493 cd00946 FBP_aldolase_IIA Class 31.3 1.5E+02 0.0032 25.8 5.9 68 10-87 90-164 (345)
494 PRK06256 biotin synthase; Vali 31.2 82 0.0018 26.5 4.3 52 27-80 152-203 (336)
495 PF01380 SIS: SIS domain SIS d 31.2 57 0.0012 22.7 2.9 29 64-92 67-95 (131)
496 PRK00164 moaA molybdenum cofac 31.0 2.4E+02 0.0052 23.5 7.1 53 18-80 138-190 (331)
497 PRK14332 (dimethylallyl)adenos 30.9 77 0.0017 28.2 4.2 64 27-91 248-317 (449)
498 TIGR01769 GGGP geranylgeranylg 30.9 2.8E+02 0.006 22.2 8.0 103 24-149 11-120 (205)
499 TIGR02064 dsrA sulfite reducta 30.7 75 0.0016 28.1 4.1 25 55-79 88-112 (402)
500 PRK14454 ribosomal RNA large s 30.7 3.1E+02 0.0068 23.5 7.9 75 56-130 227-314 (342)
No 1
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=7.1e-49 Score=329.50 Aligned_cols=148 Identities=30% Similarity=0.460 Sum_probs=142.1
Q ss_pred ceeEEEeCCC-CCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 9 EVLVHLDLKG-APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 9 ~Rg~~lD~~r-~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
.||+|||+|| +++++++||++|+.||.+|+|.||||++|+|||++. .+.+++||++|+++|++||++|||+|||||
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecC
Confidence 5999999999 999999999999999999999999999999999988 445899999999999999999999999999
Q ss_pred CCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeeccCCccCCCCCCCHHHHH
Q psy2349 85 PLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPLFCPPSALNFGTCRDDKI 158 (164)
Q Consensus 85 d~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHiGg~DE~~~~~~~~~~~~ 158 (164)
|+|||+++++++++|..+++.+.+.++|||++|+|++|+++|++|+ ++|| +++||||| ||++.+|.|+.|++
T Consensus 81 d~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~-s~~~HIG~-DE~~~~g~~~~~~~ 153 (301)
T cd06565 81 QTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHP-SKYIHIGM-DEAYDLGRGRSLRK 153 (301)
T ss_pred CCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCC-CCeEEECC-CcccccCCCHHHHH
Confidence 9999999999999999999888788999999999999999999999 9999 99999999 99999999999886
No 2
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1e-48 Score=343.52 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=135.0
Q ss_pred CCCCCCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccC--CCCCC----C---------------------
Q psy2349 3 TPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTL--PYSLG----F--------------------- 55 (164)
Q Consensus 3 D~P~~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~--p~~~~----~--------------------- 55 (164)
|+|+|+|||+|||+||||+++++||++||.||.+|+|.||||++|+. +++.. +
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999998864 43321 1
Q ss_pred --------CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcC--ccchhhhcC--------------------
Q psy2349 56 --------DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV--KEFAKMRQN-------------------- 105 (164)
Q Consensus 56 --------~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~--~~~~~l~~~-------------------- 105 (164)
+.+++||++|||+||+||++|||+||||||+|||+.++++. ..|.+|...
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 12568999999999999999999999999999999999874 123333111
Q ss_pred ----CCCCCcccCCChhhHHHHHHHHHhc-ccCC----CCCeeeccCCccCCC--CCCCHHHH--HHHHh
Q psy2349 106 ----FNDTRFICPNARSSLDLVFKMIGRM-RFVL----GTPISPLFCPPSALN--FGTCRDDK--ISVVA 162 (164)
Q Consensus 106 ----~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~----~s~~iHiGg~DE~~~--~~~~~~~~--~~m~~ 162 (164)
..+.++|||+||+||+|+++|++|+ ++|+ +++|||||| ||+.. |++|+.|| ++|++
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGG-DEv~~~~W~~~~~~~~~~~~~~ 229 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGG-DEVPEGAWGGSPACKAQLFAKE 229 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEec-cccCCCcccCCHHHHHHHHHHh
Confidence 0134789999999999999999999 9993 179999999 99997 58899999 88876
No 3
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.8e-48 Score=326.61 Aligned_cols=155 Identities=10% Similarity=0.057 Sum_probs=133.9
Q ss_pred CCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeecc--CCCCCC----CC----CCCCCCHHHHHHHHHHHHHc
Q psy2349 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----FD----NTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 7 ~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~--~p~~~~----~~----~~~~yT~~dir~iv~yA~~~ 76 (164)
|+|||+|||+||||+++++||++|+.||.+|+|.||+|++|+ ||++.. ++ .+++||++|+++|++||++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~r 80 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDR 80 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999999999875 454433 22 25699999999999999999
Q ss_pred CCeEeeccCCcchHHHHhc-Cccchhhhc-------CCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeeccCCccC
Q psy2349 77 GLASIPLVPLYSDMDFVLK-VKEFAKMRQ-------NFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPLFCPPSA 147 (164)
Q Consensus 77 gI~VIPeid~pGH~~~~l~-~~~~~~l~~-------~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHiGg~DE~ 147 (164)
||+||||||+|||+.++++ +|++..-.. .....++|||++|+|++|+++|++|+ ++|| ++|||||| ||+
T Consensus 81 gI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF~-~~~iHiGg-DE~ 158 (311)
T cd06570 81 GIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELFP-DEYFHIGG-DEV 158 (311)
T ss_pred CCEEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHHHHhCC-CCceEeec-cCC
Confidence 9999999999999999887 454432111 11234689999999999999999999 9999 89999999 999
Q ss_pred CC--CCCCHHHHHHHHhC
Q psy2349 148 LN--FGTCRDDKISVVAF 163 (164)
Q Consensus 148 ~~--~~~~~~~~~~m~~~ 163 (164)
.. |.+||.||++|++.
T Consensus 159 ~~~~W~~~p~~~~~~~~~ 176 (311)
T cd06570 159 DPKQWNENPRIQAFMKEH 176 (311)
T ss_pred CCCcccCCHHHHHHHHHc
Confidence 86 68999999999874
No 4
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=1.1e-47 Score=327.91 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=134.5
Q ss_pred CCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeecc--CCCCCC----------CCCCCCCCHHHHHHHHHHHH
Q psy2349 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----------FDNTNPFRETEIFIILAAAE 74 (164)
Q Consensus 7 ~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~--~p~~~~----------~~~~~~yT~~dir~iv~yA~ 74 (164)
|+|||+|||+||||+++++||++|+.||.+|+|.||||++|+ ||++.. .+.+++||++|+|+||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999875 666543 23367999999999999999
Q ss_pred HcCCeEeeccCCcchHHHHhcC-ccchhhh-------cCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeeccCCc
Q psy2349 75 SNGLASIPLVPLYSDMDFVLKV-KEFAKMR-------QNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPLFCPP 145 (164)
Q Consensus 75 ~~gI~VIPeid~pGH~~~~l~~-~~~~~l~-------~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHiGg~D 145 (164)
+|||+||||||+|||+.+++++ |+...-. ....+.++|||++|+|++|+++|++|+ ++|| ++|||||| |
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~-~~~iHiGg-D 158 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFP-DKYFHLGG-D 158 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcC-CcceEeec-C
Confidence 9999999999999999999875 3321111 112345789999999999999999999 9999 99999999 9
Q ss_pred cCCC--CCCCHHHHHHHHhC
Q psy2349 146 SALN--FGTCRDDKISVVAF 163 (164)
Q Consensus 146 E~~~--~~~~~~~~~~m~~~ 163 (164)
|+.. |..||.|+++|++.
T Consensus 159 E~~~~~w~~~p~~~~~m~~~ 178 (348)
T cd06562 159 EVNFNCWNSNPEIQKFMKKN 178 (348)
T ss_pred CCCCCcccCCHHHHHHHHHc
Confidence 9986 67899999999863
No 5
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.3e-47 Score=328.26 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=135.4
Q ss_pred CCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeecc--CCCCCC----C------C----------------CC
Q psy2349 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----F------D----------------NT 58 (164)
Q Consensus 7 ~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~--~p~~~~----~------~----------------~~ 58 (164)
|+|||+|||+||||+++++||++||.||.+|+|.||||++|+ ||++.. + + .+
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 799999999999999999999999999999999999999885 444332 1 1 15
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-Cccchhhhc-------CCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ-------NFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~-~~~~~~l~~-------~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
++||++|+|+|++||++|||+||||||+|||+.++++ +|++..... ...+.++|||++|+|++|+++|++|+
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~ 160 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV 160 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999997 555543221 12346899999999999999999999
Q ss_pred -ccCCCCCeeeccCCccCCC--CCCCHHHHHHHHhC
Q psy2349 131 -RFVLGTPISPLFCPPSALN--FGTCRDDKISVVAF 163 (164)
Q Consensus 131 -~lf~~s~~iHiGg~DE~~~--~~~~~~~~~~m~~~ 163 (164)
++|| ++|||||| ||+.. |++|+.|+++|++.
T Consensus 161 ~~lF~-~~~iHiGg-DE~~~~~w~~~~~~~~~~~~~ 194 (357)
T cd06563 161 AELFP-SPYIHIGG-DEVPKGQWEKSPACQARMKEE 194 (357)
T ss_pred HHhCC-CCeEEEec-cccCCcccccCHHHHHHHHHc
Confidence 9999 99999999 99986 68999999999874
No 6
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=9e-47 Score=319.12 Aligned_cols=155 Identities=13% Similarity=0.132 Sum_probs=126.4
Q ss_pred CCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeecc--CCCCCC-------C---CC---CCCCCHHHHHHHHH
Q psy2349 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG-------F---DN---TNPFRETEIFIILA 71 (164)
Q Consensus 7 ~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~--~p~~~~-------~---~~---~~~yT~~dir~iv~ 71 (164)
|+|||+|||+||+|+++++||++|+.||.+|+|.||||++|+ ||+... . +. +++||++||++|++
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999986 555443 1 22 23999999999999
Q ss_pred HHHHcCCeEeeccCCcchHHHHhcC-ccchhh-----------hcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCe
Q psy2349 72 AAESNGLASIPLVPLYSDMDFVLKV-KEFAKM-----------RQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPI 138 (164)
Q Consensus 72 yA~~~gI~VIPeid~pGH~~~~l~~-~~~~~l-----------~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~ 138 (164)
||++|||+||||||+|||++++++. |++... .....+.++|||++|+|++|+++|++|+ ++|+ ++|
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~-~~~ 159 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP-SKY 159 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT-SSE
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC-CCe
Confidence 9999999999999999999999974 555432 0111234689999999999999999999 9999 999
Q ss_pred eeccCCccCCC--CCCCHHHHHHHHhC
Q psy2349 139 SPLFCPPSALN--FGTCRDDKISVVAF 163 (164)
Q Consensus 139 iHiGg~DE~~~--~~~~~~~~~~m~~~ 163 (164)
||||| ||++. |+.|+.|+++|++.
T Consensus 160 iHiGg-DEv~~~~~~~~~~~~~~~~~~ 185 (351)
T PF00728_consen 160 IHIGG-DEVNYNCWNNSPECQAWMKQN 185 (351)
T ss_dssp EEEE--TSTTTHHHHCHHHHHHHHHHT
T ss_pred EEeCC-cccccccccCCHHHhhHHhhc
Confidence 99999 99995 68999999999863
No 7
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=3.3e-44 Score=304.64 Aligned_cols=143 Identities=12% Similarity=0.077 Sum_probs=123.0
Q ss_pred CCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeecc--CCCCCC----C-----------CCCCCCCHHHHHHH
Q psy2349 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----F-----------DNTNPFRETEIFII 69 (164)
Q Consensus 7 ~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~--~p~~~~----~-----------~~~~~yT~~dir~i 69 (164)
|+|||+|||+||||+++++||++||.||.+|+|.||||++|+ |++... + +.+++||++|+++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 799999999999999999999999999999999999999986 444332 2 23469999999999
Q ss_pred HHHHHHcCCeEeeccCCcchHHHHhc-Cccchhhhc-------CCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeee
Q psy2349 70 LAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ-------NFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISP 140 (164)
Q Consensus 70 v~yA~~~gI~VIPeid~pGH~~~~l~-~~~~~~l~~-------~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iH 140 (164)
++||++|||+||||||+|||+.++++ +|++..-.. ...+.++|||++|+|++|+++|++|+ ++|| ++|||
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~-~~~iH 159 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTP-GPYIH 159 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCC-CCeEE
Confidence 99999999999999999999999887 455432111 11235789999999999999999999 9999 99999
Q ss_pred ccCCccCCCCC
Q psy2349 141 LFCPPSALNFG 151 (164)
Q Consensus 141 iGg~DE~~~~~ 151 (164)
||| ||+...+
T Consensus 160 iGg-DE~~~~~ 169 (329)
T cd06568 160 IGG-DEAHSTP 169 (329)
T ss_pred Eec-ccCCCCc
Confidence 999 9998654
No 8
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=9e-44 Score=301.08 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=124.7
Q ss_pred CceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC----C---------------------CCCCCCC
Q psy2349 8 KEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG----F---------------------DNTNPFR 62 (164)
Q Consensus 8 ~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~----~---------------------~~~~~yT 62 (164)
.+||+|||+||||+++++||++|+.||++|+|.||||++|+|++... + +.+++||
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT 80 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT 80 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc
Confidence 37999999999999999999999999999999999999999988765 1 2467999
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcC-ccchhhhc-CCCCCCcccCCChhhHHHHHHHHHhc-ccCCC-CCe
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV-KEFAKMRQ-NFNDTRFICPNARSSLDLVFKMIGRM-RFVLG-TPI 138 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~-~~~~~l~~-~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~-s~~ 138 (164)
++|+|+|++||++|||+||||||+|||+.++++. |++..... .....++|||++|+|++|+++|++|+ ++||+ ++|
T Consensus 81 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~ 160 (326)
T cd06564 81 KEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDT 160 (326)
T ss_pred HHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 9999999999999999999999999999999885 33321111 12456899999999999999999999 99985 899
Q ss_pred eeccCCccCCCC
Q psy2349 139 SPLFCPPSALNF 150 (164)
Q Consensus 139 iHiGg~DE~~~~ 150 (164)
||||| ||+...
T Consensus 161 ~HiGg-DE~~~~ 171 (326)
T cd06564 161 VHIGA-DEYAGD 171 (326)
T ss_pred EEecc-cccccc
Confidence 99999 999874
No 9
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.3e-43 Score=297.68 Aligned_cols=140 Identities=12% Similarity=0.071 Sum_probs=120.8
Q ss_pred ceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeecc--CCCCCC----C----------CCCCCCCHHHHHHHHHH
Q psy2349 9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----F----------DNTNPFRETEIFIILAA 72 (164)
Q Consensus 9 ~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~--~p~~~~----~----------~~~~~yT~~dir~iv~y 72 (164)
|||+|||+||+|+++++||++||.||.+|+|.||||++|+ ||++.. + +.+++||++|+++|++|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 7999999999999999999999999999999999999975 555543 2 24569999999999999
Q ss_pred HHHcCCeEeeccCCcchHHHHhcC-ccchhhh----cCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeeccCCcc
Q psy2349 73 AESNGLASIPLVPLYSDMDFVLKV-KEFAKMR----QNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPLFCPPS 146 (164)
Q Consensus 73 A~~~gI~VIPeid~pGH~~~~l~~-~~~~~l~----~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHiGg~DE 146 (164)
|++|||+||||||+|||++++++. |+...-+ ......++|||++|+|++|+++|++|+ ++|| ++|||||| ||
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~-~~~iHiGg-DE 158 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFP-DRYLHIGG-DE 158 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCC-CCeEEecc-ee
Confidence 999999999999999999999875 4322110 112245799999999999999999999 9998 99999999 99
Q ss_pred CCCC
Q psy2349 147 ALNF 150 (164)
Q Consensus 147 ~~~~ 150 (164)
+...
T Consensus 159 ~~~~ 162 (303)
T cd02742 159 AHFK 162 (303)
T ss_pred cCCC
Confidence 9754
No 10
>KOG2499|consensus
Probab=100.00 E-value=1.8e-41 Score=294.42 Aligned_cols=159 Identities=9% Similarity=0.056 Sum_probs=140.3
Q ss_pred CCCCCCCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeec--cCCCCCC----------CCCCCCCCHHHHHHH
Q psy2349 2 VTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWED--TLPYSLG----------FDNTNPFRETEIFII 69 (164)
Q Consensus 2 ~D~P~~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed--~~p~~~~----------~~~~~~yT~~dir~i 69 (164)
.|.|+|++||++||.|||+++++.||+.|+.||+.|+|.||+|+.| +||+++. .+....||++|+++|
T Consensus 176 ~D~PrF~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~ev 255 (542)
T KOG2499|consen 176 QDKPRFGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEV 255 (542)
T ss_pred eccCCCcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHH
Confidence 6999999999999999999999999999999999999999999855 7898775 234568999999999
Q ss_pred HHHHHHcCCeEeeccCCcchHHHH-hcCcc-----chhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeecc
Q psy2349 70 LAAAESNGLASIPLVPLYSDMDFV-LKVKE-----FAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPLF 142 (164)
Q Consensus 70 v~yA~~~gI~VIPeid~pGH~~~~-l~~~~-----~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHiG 142 (164)
|+||+.|||+|+||||+|||++.+ -++|. |.. .+...+++++||+++.+|+|+++++.|| +.|| ..+||+|
T Consensus 256 V~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~-~~~~~~~gplnP~~n~tydvls~i~~dv~evFp-~~~~HlG 333 (542)
T KOG2499|consen 256 VEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSS-FEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFP-DEFFHLG 333 (542)
T ss_pred HHHHHhccceeeecccCCcccccccCCCCcccCCcccc-cccCCCCcCCCCCchhHHHHHHHHHHHHHHhCc-HHHeecC
Confidence 999999999999999999999876 23444 322 2334567899999999999999999999 9999 9999999
Q ss_pred CCccCCC--CCCCHHHHHHHHhC
Q psy2349 143 CPPSALN--FGTCRDDKISVVAF 163 (164)
Q Consensus 143 g~DE~~~--~~~~~~~~~~m~~~ 163 (164)
| |||.. |.+.+..|.+|++-
T Consensus 334 G-DEV~~~CW~s~~~Iq~fM~~k 355 (542)
T KOG2499|consen 334 G-DEVSTPCWKSNPEIQDFMRKK 355 (542)
T ss_pred C-ceeecccccCChHHHHHHHhC
Confidence 9 99985 68899999999863
No 11
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-36 Score=269.28 Aligned_cols=160 Identities=11% Similarity=0.099 Sum_probs=134.9
Q ss_pred CCCCCCCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC------------C--------------
Q psy2349 2 VTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG------------F-------------- 55 (164)
Q Consensus 2 ~D~P~~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~------------~-------------- 55 (164)
+|+|||.|||+|+|++|+|.+.+.+|++|+.|+.+|+|.+|||+.|+--+..+ +
T Consensus 256 ~DaPRf~~rGllvDvaRqf~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~ 335 (732)
T COG3525 256 VDAPRFAWRGLLVDVARQFHSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYG 335 (732)
T ss_pred ccCcccchhhhhHhhhhhcCCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccC
Confidence 69999999999999999999999999999999999999999999874322111 0
Q ss_pred --CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhh-hcCC--------CCCCcccCCChhhHHHHH
Q psy2349 56 --DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKM-RQNF--------NDTRFICPNARSSLDLVF 124 (164)
Q Consensus 56 --~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l-~~~~--------~~~~~l~p~~~~t~~~~~ 124 (164)
..+++||++++|+|++||+.|+|+||||||+|||+.+.+..-++..+ ++.+ .....+||+-+.+++|++
T Consensus 336 pe~~ggfytqd~~relv~yAsar~ItviPeiD~PgHa~aav~A~p~~~l~~a~~ds~~sv~~~~n~~ln~tl~~t~~fld 415 (732)
T COG3525 336 PERMGGFYTQDDIRELVAYASARQITVIPEIDMPGHARAAVVAYPDLNLGRADPDSYDSVQAYLNPVLNPTLDPTYQFLD 415 (732)
T ss_pred cccccCcccHHHHHHHHHHHhhcCceecCCcCCcchhhhhhhhCccccccccCCCcchhhhhcccccccccccHHHHHHH
Confidence 12589999999999999999999999999999999987764333223 1111 123489999999999999
Q ss_pred HHHHhc-ccCCCCCeeeccCCccCCC--CCC-CHHHHHHHHhC
Q psy2349 125 KMIGRM-RFVLGTPISPLFCPPSALN--FGT-CRDDKISVVAF 163 (164)
Q Consensus 125 ~l~~E~-~lf~~s~~iHiGg~DE~~~--~~~-~~~~~~~m~~~ 163 (164)
++++|| ++|| |.+||||| ||+.. |.. +|.||+.|++.
T Consensus 416 kv~dEv~~lfP-s~~iHiGg-DE~~~~qwk~~sp~~q~l~~~~ 456 (732)
T COG3525 416 KVLDEVADLFP-STTIHIGG-DEFIDGQWKASSPLVQALMEKL 456 (732)
T ss_pred HHHHHHHHhCC-cceEEecc-chhccCeeeccCHHHHHHHHHh
Confidence 999999 9999 99999999 99986 555 99999999874
No 12
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.26 E-value=3.1e-05 Score=65.67 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=89.7
Q ss_pred ceeEEEeCC--CCCCCHHHHHHHHHHHHhcCCCEEEEEee---c------cCCCCCCCCCC--CCCCHHHHHHHHHHHHH
Q psy2349 9 EVLVHLDLK--GAPPSLTYLKEILPILAYTGATSLLIEWE---D------TLPYSLGFDNT--NPFRETEIFIILAAAES 75 (164)
Q Consensus 9 ~Rg~~lD~~--r~~~~~~~lk~~i~~la~~k~N~l~l~~e---d------~~p~~~~~~~~--~~yT~~dir~iv~yA~~ 75 (164)
.|||=|+.. -.+++.+.+.++++.|...|+|++.++.- | ..|+...++.. ..-..+=+..+|+-|.+
T Consensus 2 ~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHk 81 (311)
T PF02638_consen 2 FRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHK 81 (311)
T ss_pred eEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHH
Confidence 588888884 45678899999999999999999987762 2 22322222211 12236779999999999
Q ss_pred cCCeEeeccC--CcchH-HHHh-cCccchhhh------c---CCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeec
Q psy2349 76 NGLASIPLVP--LYSDM-DFVL-KVKEFAKMR------Q---NFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPL 141 (164)
Q Consensus 76 ~gI~VIPeid--~pGH~-~~~l-~~~~~~~l~------~---~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHi 141 (164)
|||+|.+=+. +.++. +.++ ++|+..... . ......-|||++|++.+++.+++.|+ .-.+ -.=||+
T Consensus 82 rGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhl 160 (311)
T PF02638_consen 82 RGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHL 160 (311)
T ss_pred cCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEe
Confidence 9999999872 22221 1122 244431100 0 01223479999999999999999999 8887 777775
No 13
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.63 E-value=0.00087 Score=50.29 Aligned_cols=106 Identities=12% Similarity=0.061 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCCEEEEEeec-----cCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchh
Q psy2349 27 KEILPILAYTGATSLLIEWED-----TLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAK 101 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed-----~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~ 101 (164)
+++++.|...++|++.+.-.+ -||-+..-. ...++.+=++++|+.|+++||+|+--++.--+.....+||+|..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~-hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~ 81 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPR-HPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFV 81 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcC-CCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceee
Confidence 678999999999999885532 233332211 22556667799999999999999999999988888899999875
Q ss_pred hhcCCC----------CCCcccCCChhhHHHHHHHHHhc-ccCC
Q psy2349 102 MRQNFN----------DTRFICPNARSSLDLVFKMIGRM-RFVL 134 (164)
Q Consensus 102 l~~~~~----------~~~~l~p~~~~t~~~~~~l~~E~-~lf~ 134 (164)
....+. ...++|++.+ -++++...++|+ +.++
T Consensus 82 ~~~~G~~~~~~~~~~~~~~~~c~ns~-Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 82 RDADGRPMRGERFGYPGWYTCCLNSP-YREFLLEQIREILDRYD 124 (132)
T ss_pred ECCCCCCcCCCCcCCCCceecCCCcc-HHHHHHHHHHHHHHcCC
Confidence 433321 1235666554 559999999999 8776
No 14
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.0095 Score=52.67 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=90.8
Q ss_pred CCceeEEEe-C-CCCCCCHHHHHHHHHHHHhcCCCEEEEEee---cc-CCCCCC-CCCC--C----CCCHHHHHHHHHHH
Q psy2349 7 FKEVLVHLD-L-KGAPPSLTYLKEILPILAYTGATSLLIEWE---DT-LPYSLG-FDNT--N----PFRETEIFIILAAA 73 (164)
Q Consensus 7 ~~~Rg~~lD-~-~r~~~~~~~lk~~i~~la~~k~N~l~l~~e---d~-~p~~~~-~~~~--~----~yT~~dir~iv~yA 73 (164)
=.-||+=|| . ++...+...+++.++.|..+++|++..... ++ ||-... ++.. + .=-.+=+..+|+-|
T Consensus 45 ~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~A 124 (418)
T COG1649 45 QEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEA 124 (418)
T ss_pred ccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHH
Confidence 345999999 4 588899999999999999999999987653 22 232222 1110 0 11134588999999
Q ss_pred HHcCCeEeeccCCcc----hHHHHhcCccchhh--------hcCCC-CCCcccCCChhhHHHHHHHHHhc-ccCCCCCee
Q psy2349 74 ESNGLASIPLVPLYS----DMDFVLKVKEFAKM--------RQNFN-DTRFICPNARSSLDLVFKMIGRM-RFVLGTPIS 139 (164)
Q Consensus 74 ~~~gI~VIPeid~pG----H~~~~l~~~~~~~l--------~~~~~-~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~i 139 (164)
.+||++|+|=++... ++.....+|....- ++... ..-.|||..|++-+|+.+++.|+ .-.. ..=|
T Consensus 125 Hkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd-vDGI 203 (418)
T COG1649 125 HKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD-VDGI 203 (418)
T ss_pred HhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC-CCce
Confidence 999999999887633 33333333332211 11110 24579999999999999999999 7776 5555
Q ss_pred ec
Q psy2349 140 PL 141 (164)
Q Consensus 140 Hi 141 (164)
|+
T Consensus 204 Qf 205 (418)
T COG1649 204 QF 205 (418)
T ss_pred ec
Confidence 54
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=97.02 E-value=0.007 Score=52.15 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEE---eeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-Cc
Q psy2349 22 SLTYLKEILPILAYTGATSLLIE---WEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VK 97 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~---~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~-~~ 97 (164)
+.+.+++-++.|.+.|+|.++|. |+..-|- .|.|.=+.+..+++.|+++||.||--+.+.+.=.|+.+ +|
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~------eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~P 81 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE------EGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYP 81 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB------TTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccCC------CCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcc
Confidence 44789999999999999999863 4433343 46777788999999999999999976665555567654 55
Q ss_pred cchhhhcC-----CCCCCcccCCChhhHHHHHHHHHhc-ccCCCCC---eeeccCCccCCC-CCCCHHHHHHH
Q psy2349 98 EFAKMRQN-----FNDTRFICPNARSSLDLVFKMIGRM-RFVLGTP---ISPLFCPPSALN-FGTCRDDKISV 160 (164)
Q Consensus 98 ~~~~l~~~-----~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~---~iHiGg~DE~~~-~~~~~~~~~~m 160 (164)
+....... .......|+.+|...+.+.++++.+ +-+.+.+ -+||+- |... ..-|+.|++.-
T Consensus 82 e~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N--E~~~~~~~~~~~~~~f 152 (374)
T PF02449_consen 82 EILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN--EPGYHRCYSPACQAAF 152 (374)
T ss_dssp CCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC--STTCTS--SHHHHHHH
T ss_pred cccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc--ccCcCcCCChHHHHHH
Confidence 54322111 1233468999999999999998888 6555333 456644 5444 46788888754
No 16
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.80 E-value=0.0099 Score=50.79 Aligned_cols=110 Identities=12% Similarity=0.234 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccC---CCCCC---CCCCCCCC--HHHHHHHHHHHHHcCCeEeeccCCcchHHHHh
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTL---PYSLG---FDNTNPFR--ETEIFIILAAAESNGLASIPLVPLYSDMDFVL 94 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~---p~~~~---~~~~~~yT--~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l 94 (164)
.+.+.++++.+...++|++.+.+.|.. .|.+. ....+.-+ ..|++.|++.++++||-+|--|-++--.....
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 467999999999999999999997743 33333 11122222 47999999999999999999999988766666
Q ss_pred cCccchhhhcC------CCCCCcccCCChhhHHHHHHHHHhc-cc
Q psy2349 95 KVKEFAKMRQN------FNDTRFICPNARSSLDLVFKMIGRM-RF 132 (164)
Q Consensus 95 ~~~~~~~l~~~------~~~~~~l~p~~~~t~~~~~~l~~E~-~l 132 (164)
++|++.-.... .....-+||.++++++.+-++.+|+ .+
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 67776432111 1234579999999999999999999 54
No 17
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=96.32 E-value=0.014 Score=48.88 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCC--C-CCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc------
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLP--Y-SLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS------ 88 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p--~-~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG------ 88 (164)
++-.+.+..|+.||..|++|+..+.+ +..+- . .....-...+...+|++|++||+++||.|+-=...-+
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlv--D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~ 103 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLV--DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVAN 103 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEE--BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEe--ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHh
Confidence 45678999999999999999998877 22111 0 0111112466778999999999999988875544433
Q ss_pred ---hHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 89 ---DMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 89 ---H~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
+++.+++. |.++.-.+.-.+-++-.+.+..++..+++++.
T Consensus 104 ~~~~~~~~f~~--~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~A 146 (273)
T PF10566_consen 104 LEKQLDEAFKL--YAKWGVKGVKIDFMDRDDQEMVNWYEDILEDA 146 (273)
T ss_dssp HHCCHHHHHHH--HHHCTEEEEEEE--SSTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHH
Confidence 12222221 33322222223456668889999999999987
No 18
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=95.55 E-value=0.069 Score=47.66 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=53.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEE--eec-c----CCCCCC-CC-----------CCCCCCHHHHHHHHH
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE--WED-T----LPYSLG-FD-----------NTNPFRETEIFIILA 71 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~--~ed-~----~p~~~~-~~-----------~~~~yT~~dir~iv~ 71 (164)
+|+.|+-...-.-..|.+-++.|+.+|+|.+.|- ++. + ..|... .- ...+=|.+|++++|+
T Consensus 9 ~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~ 88 (479)
T PRK09441 9 YFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAID 88 (479)
T ss_pred EEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHH
Confidence 6677765444445567888899999999998752 110 0 011111 10 122238999999999
Q ss_pred HHHHcCCeEeeccCCcchHH
Q psy2349 72 AAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 72 yA~~~gI~VIPeid~pGH~~ 91 (164)
-|.+|||.||-.+ ++-|++
T Consensus 89 ~~H~~Gi~vi~D~-V~NH~~ 107 (479)
T PRK09441 89 ALHENGIKVYADV-VLNHKA 107 (479)
T ss_pred HHHHCCCEEEEEE-Cccccc
Confidence 9999999999876 466765
No 19
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.13 E-value=0.23 Score=45.97 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=66.9
Q ss_pred CCCHHHH-HHHHHHHHhcCCCEEEEE-e-e----ccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 20 PPSLTYL-KEILPILAYTGATSLLIE-W-E----DTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 20 ~~~~~~l-k~~i~~la~~k~N~l~l~-~-e----d~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+-+...+ .++|+.|+.+|+|.+.|- + + .++.|... .....+=|.+|+|++|+.|.++||.||-.+- +.|
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V-~nH 244 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWV-PGH 244 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCC
Confidence 3455554 456799999999998742 1 1 12223222 1223344899999999999999999998874 778
Q ss_pred HHH---HhcC----ccch--hhhcC---CCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 90 MDF---VLKV----KEFA--KMRQN---FNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 90 ~~~---~l~~----~~~~--~l~~~---~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
+.. .+.. +.|. .-... ......+|-.||++.+++.+.+.-.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W 297 (633)
T PRK12313 245 FPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFW 297 (633)
T ss_pred CCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHH
Confidence 742 1111 0110 00000 0112357888999999888865544
No 20
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=94.94 E-value=0.12 Score=41.60 Aligned_cols=73 Identities=14% Similarity=-0.021 Sum_probs=49.0
Q ss_pred CceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCC-CC---CHHHHHHHHHHHHHcCCeEeec
Q psy2349 8 KEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTN-PF---RETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 8 ~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~-~y---T~~dir~iv~yA~~~gI~VIPe 83 (164)
.+||+-.. ..+.....+.++.|+.+|+|.++|.+.=. .+.. ...+ .+ ..+.++++|++|+++||.||..
T Consensus 9 ~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~~~-~~~~--~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 9 NWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVGWE-AYQE--PNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp EEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEEST-STST--TSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred Eeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCCHH-HhcC--CCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 45666655 33223689999999999999999877610 1110 1111 12 4468899999999999999987
Q ss_pred cCCc
Q psy2349 84 VPLY 87 (164)
Q Consensus 84 id~p 87 (164)
+-..
T Consensus 82 ~h~~ 85 (281)
T PF00150_consen 82 LHNA 85 (281)
T ss_dssp EEES
T ss_pred eccC
Confidence 7663
No 21
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.21 Score=46.46 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCC--------CCCC-CCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGF--------DNTN-PFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~--------~~~~-~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
=+.+...++|+.|+++|+|.+.|-==-.||+.+.| +... +=|++|++.+|..|-++||.||-.+ +|||..
T Consensus 162 ~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~-V~~HF~ 240 (628)
T COG0296 162 GYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW-VPNHFP 240 (628)
T ss_pred CHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe-cCCcCC
Confidence 34566789999999999997753211235665542 2222 3399999999999999999999765 688874
No 22
>smart00642 Aamy Alpha-amylase domain.
Probab=94.29 E-value=0.28 Score=37.90 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEe--ecc------CCCCCC-C--CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEW--EDT------LPYSLG-F--DNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~--ed~------~p~~~~-~--~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
.=+.+.+.+-++.|+.+|+|.++|-= +.. ..|... . .+..+=|.+|++++++-|.++||+||-.+ ++-
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~-V~N 93 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV-VIN 93 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCC
Confidence 34577788888999999999987621 111 111111 1 11123388999999999999999999888 467
Q ss_pred hHHH
Q psy2349 89 DMDF 92 (164)
Q Consensus 89 H~~~ 92 (164)
|+..
T Consensus 94 H~~~ 97 (166)
T smart00642 94 HTSD 97 (166)
T ss_pred CCCC
Confidence 7654
No 23
>KOG0470|consensus
Probab=94.16 E-value=0.077 Score=49.79 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=75.5
Q ss_pred EEE-eCCCCCCCHHH-------HHHHHHHHHhcCCCEEEEEe--ec-----cCCCCCC--CCCCC-CCCHH------HHH
Q psy2349 12 VHL-DLKGAPPSLTY-------LKEILPILAYTGATSLLIEW--ED-----TLPYSLG--FDNTN-PFRET------EIF 67 (164)
Q Consensus 12 ~~l-D~~r~~~~~~~-------lk~~i~~la~~k~N~l~l~~--ed-----~~p~~~~--~~~~~-~yT~~------dir 67 (164)
.|. +.+++-.++.. -++.++.|..+|+|.+||.= |. +|+|... .+... +=|.+ |+|
T Consensus 235 ~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK 314 (757)
T KOG0470|consen 235 LHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFK 314 (757)
T ss_pred EeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHH
Confidence 455 66666666555 57778999999999998742 22 4455433 22222 22555 999
Q ss_pred HHHHHHHHcCCeEeeccCCcchHHHHhcCcc--chh--------h----hcCCCCCCcccCCChhhHHHHHHHHH
Q psy2349 68 IILAAAESNGLASIPLVPLYSDMDFVLKVKE--FAK--------M----RQNFNDTRFICPNARSSLDLVFKMIG 128 (164)
Q Consensus 68 ~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~--~~~--------l----~~~~~~~~~l~p~~~~t~~~~~~l~~ 128 (164)
++|.-|-..||.|+-+| +..|+..--+.+. |.. . -....+.+.+|-..+.+.+||.+=++
T Consensus 315 ~lVd~aHs~GI~VlLDV-V~sHaa~n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr 388 (757)
T KOG0470|consen 315 ELVDKAHSLGIEVLLDV-VHSHAAKNSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLR 388 (757)
T ss_pred HHHHHHhhCCcEEehhh-hhhhcccCcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHH
Confidence 99999999999999888 5667755111110 111 0 11223567899999999999877443
No 24
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.02 E-value=0.12 Score=41.66 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEE--eec---cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 23 LTYLKEILPILAYTGATSLLIE--WED---TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~--~ed---~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
...|++-|+.|+.+|+|+++|- ++. ...|... -.+..+=|.+|++++|+-|.++||.||-.+- +.|+
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V-~NH~ 77 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV-PNHT 77 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE-TSEE
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee-cccc
Confidence 4567888999999999998752 111 1111111 1122333899999999999999999997764 3465
No 25
>PLN00196 alpha-amylase; Provisional
Probab=93.49 E-value=0.51 Score=41.94 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEE-eeccCCCCCC-------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 23 LTYLKEILPILAYTGATSLLIE-WEDTLPYSLG-------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~-~ed~~p~~~~-------~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
...|++-++.|+.+|++.+.|- .-++....+. +.+..+=|.+|++++|+-|.++||.||-.+ ++-|+.
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv-V~NH~~ 118 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI-VINHRT 118 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE-CccCcc
Confidence 5678899999999999998763 1111111111 211224489999999999999999999877 456664
No 26
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=93.27 E-value=0.32 Score=44.73 Aligned_cols=138 Identities=9% Similarity=0.063 Sum_probs=84.2
Q ss_pred CCCCCCCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEE---EeeccCCCCCC-------C--CCCCCCCHHHHHHH
Q psy2349 2 VTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLI---EWEDTLPYSLG-------F--DNTNPFRETEIFII 69 (164)
Q Consensus 2 ~D~P~~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l---~~ed~~p~~~~-------~--~~~~~yT~~dir~i 69 (164)
+|+-+||.-|+.=|-... .+.+..++.|+.|+.+++|.+|+ ++.+..|+... | -.+...+.+-||+.
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~y 175 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDY 175 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHH
Confidence 578889999998875322 56688999999999999999995 45677777654 2 11346688899999
Q ss_pred HHHHHHcCCeEeeccCCcchHHHHhc---CccchhhhcCCC------------C--CCcccCCChhhHHHHHHHHHhc-c
Q psy2349 70 LAAAESNGLASIPLVPLYSDMDFVLK---VKEFAKMRQNFN------------D--TRFICPNARSSLDLVFKMIGRM-R 131 (164)
Q Consensus 70 v~yA~~~gI~VIPeid~pGH~~~~l~---~~~~~~l~~~~~------------~--~~~l~p~~~~t~~~~~~l~~E~-~ 131 (164)
|+.|.++|+..++-.-+.|=...... .|++.-+..... . --.+||+|+.=.+++-+=+.++ .
T Consensus 176 I~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~ 255 (559)
T PF13199_consen 176 INAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQ 255 (559)
T ss_dssp HHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999888876654332 222211111000 0 2468999999888877777777 7
Q ss_pred cCCCCCeeec
Q psy2349 132 FVLGTPISPL 141 (164)
Q Consensus 132 lf~~s~~iHi 141 (164)
.|. -.=|||
T Consensus 256 ~~g-FDG~hl 264 (559)
T PF13199_consen 256 NFG-FDGWHL 264 (559)
T ss_dssp HHT---EEEE
T ss_pred ccC-CceEee
Confidence 675 666665
No 27
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=93.23 E-value=0.38 Score=43.78 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEe--e---ccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEW--E---DTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~--e---d~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
=++..+.+-++.|+.+|+|.++|-= + ...+|... -....+=|.+|++++|+.|.++||+||-.+ ++-|++
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~-v~NH~~ 101 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM-VFNHTS 101 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE-Cccccc
Confidence 3677888889999999999987521 0 00122211 011223389999999999999999999877 466664
No 28
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=93.21 E-value=0.9 Score=41.44 Aligned_cols=69 Identities=22% Similarity=0.154 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEe----e--ccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEW----E--DTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~----e--d~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
+...|.+-|+.|+.+|+|+++|-= . .++.|... .....+=|.+|+|++|+.|.++||+||=.+- +.|++
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V-~NH~~ 186 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVV-YNHFG 186 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEc-cCCCC
Confidence 456677778999999999987521 1 11122211 1223344899999999999999999998774 56764
No 29
>PRK14705 glycogen branching enzyme; Provisional
Probab=93.20 E-value=0.9 Score=45.40 Aligned_cols=103 Identities=9% Similarity=0.039 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCCEEEEE-eeccCCCCCC---------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH---H
Q psy2349 26 LKEILPILAYTGATSLLIE-WEDTLPYSLG---------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD---F 92 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~-~ed~~p~~~~---------~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~---~ 92 (164)
.+++|+.+..+|+|.++|- +.+ +|+.+. .....+=|.+|+|.+|+.|-++||.||-.+ .|+|+. +
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e-~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~-V~nH~~~d~~ 845 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAE-HPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW-VPAHFPKDSW 845 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECcccc-CCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe-ccccCCcchh
Confidence 3567899999999988642 211 233221 112234489999999999999999999776 578872 3
Q ss_pred HhcC----ccchh--hh--c-CCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 93 VLKV----KEFAK--MR--Q-NFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 93 ~l~~----~~~~~--l~--~-~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
.+.. +-|.. -+ . .......+|-.++++.+|+-+.+.-.
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~W 892 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYW 892 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 3321 11110 00 0 01122357889999999987765444
No 30
>PLN02361 alpha-amylase
Probab=93.06 E-value=0.57 Score=41.31 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=51.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEe-eccCCCCCC----C--CCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEW-EDTLPYSLG----F--DNTNPFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~-ed~~p~~~~----~--~~~~~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
||..|...+ ---+.|++-++.|+.+|++.+.|-= .++....+. + -+..+=|++|++++|+-|.++||.||-.
T Consensus 17 ~F~W~~~~~-~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D 95 (401)
T PLN02361 17 AFNWESHKH-DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMAD 95 (401)
T ss_pred EEeccCCcc-HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 566665321 1236688888999999999987621 111111111 1 1122348999999999999999999988
Q ss_pred cCCcchH
Q psy2349 84 VPLYSDM 90 (164)
Q Consensus 84 id~pGH~ 90 (164)
+= +-|+
T Consensus 96 ~V-~NH~ 101 (401)
T PLN02361 96 IV-INHR 101 (401)
T ss_pred Ec-cccc
Confidence 74 4565
No 31
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=92.85 E-value=0.36 Score=44.49 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEE----eec----------cCCCCCC--CCCCCCC---------CHHHHHHHHHHHHHcCC
Q psy2349 24 TYLKEILPILAYTGATSLLIE----WED----------TLPYSLG--FDNTNPF---------RETEIFIILAAAESNGL 78 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~----~ed----------~~p~~~~--~~~~~~y---------T~~dir~iv~yA~~~gI 78 (164)
..+.+.|+.|+.+|+|.++|- ... ++.|... ..-...| +.+|+|++|+-|.++||
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi 243 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGI 243 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence 345577999999999998752 110 1122211 1111112 25899999999999999
Q ss_pred eEeeccCCcchHH
Q psy2349 79 ASIPLVPLYSDMD 91 (164)
Q Consensus 79 ~VIPeid~pGH~~ 91 (164)
+||=.+ ++.|+.
T Consensus 244 ~VilDv-V~NH~~ 255 (605)
T TIGR02104 244 RVIMDV-VYNHTY 255 (605)
T ss_pred EEEEEE-EcCCcc
Confidence 999887 456764
No 32
>PLN02784 alpha-amylase
Probab=92.65 E-value=0.75 Score=44.35 Aligned_cols=81 Identities=10% Similarity=-0.058 Sum_probs=54.9
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEe-eccCCCCCC----C--CCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEW-EDTLPYSLG----F--DNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~-ed~~p~~~~----~--~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
.||+.|.-..----..|++-++.|+.+|+|.++|-= ..+....+. + -+..+=|++|++++|+.|.++||.||-
T Consensus 507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIl 586 (894)
T PLN02784 507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLG 586 (894)
T ss_pred EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 577778733221256789999999999999987631 111111111 1 112344999999999999999999998
Q ss_pred ccCCcchHH
Q psy2349 83 LVPLYSDMD 91 (164)
Q Consensus 83 eid~pGH~~ 91 (164)
.| ++-|+.
T Consensus 587 Di-ViNH~a 594 (894)
T PLN02784 587 DA-VLNHRC 594 (894)
T ss_pred EE-Cccccc
Confidence 87 566764
No 33
>PRK05402 glycogen branching enzyme; Provisional
Probab=92.61 E-value=0.61 Score=43.99 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=47.9
Q ss_pred CCCHHHHH-HHHHHHHhcCCCEEEEE-e-e----ccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 20 PPSLTYLK-EILPILAYTGATSLLIE-W-E----DTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 20 ~~~~~~lk-~~i~~la~~k~N~l~l~-~-e----d~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+-+...+. ++|+.|+.+|+|.++|- + + .++.|... ..+..+=|.+|+|++|+.|.++||.||=.+- +.|
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V-~NH 339 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWV-PAH 339 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC-CCC
Confidence 34555554 55699999999998752 1 1 12222222 1234455899999999999999999998764 566
Q ss_pred H
Q psy2349 90 M 90 (164)
Q Consensus 90 ~ 90 (164)
+
T Consensus 340 ~ 340 (726)
T PRK05402 340 F 340 (726)
T ss_pred C
Confidence 6
No 34
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=92.60 E-value=0.94 Score=38.59 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=42.4
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC-CCCCCCCCHH---HHHHHHHHHHHcCCeEeecc
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRET---EIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~-~~~~~~yT~~---dir~iv~yA~~~gI~VIPei 84 (164)
|||.=--=|.++|-+.=+++++.|+.+|+|+. ++--..=||-.. |+ ..|+.+ ++++|++.|++.||+.+=-|
T Consensus 1 RGvIEGFYG~PWs~e~R~~l~~f~~~~kmN~Y-iYAPKdDpyhr~~Wr--e~Yp~~el~~l~~L~~~a~~~~V~Fv~ai 76 (306)
T PF07555_consen 1 RGVIEGFYGRPWSHEDRLDLIRFLGRYKMNTY-IYAPKDDPYHRSKWR--EPYPEEELAELKELADAAKANGVDFVYAI 76 (306)
T ss_dssp EEEEE-SSSS---HHHHHHHHHHHHHTT--EE-EE--TT-TTTTTTTT--S---HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCceeCcCCCCCCHHHHHHHHHHHHHcCCceE-EECCCCChHHHhhhc--ccCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 33333333678899999999999999999985 344322244433 54 567665 67889999999999988555
No 35
>PRK01060 endonuclease IV; Provisional
Probab=92.59 E-value=0.88 Score=37.11 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=48.4
Q ss_pred ceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2349 9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 9 ~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~V 80 (164)
.-|+|..+++. +++.++.++.+|++++.|-......+. ...+|.++++++-+.++++||++
T Consensus 3 ~~g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~-----~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 3 LIGAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK-----RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred eEEEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc-----CCCCCHHHHHHHHHHHHHcCCCC
Confidence 34788888765 889999999999999988665322111 34689999999999999999994
No 36
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.56 E-value=0.48 Score=44.20 Aligned_cols=70 Identities=10% Similarity=0.055 Sum_probs=46.9
Q ss_pred CCCHHHH-HHHHHHHHhcCCCEEEEEeeccCCCCCC--------C-CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 20 PPSLTYL-KEILPILAYTGATSLLIEWEDTLPYSLG--------F-DNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 20 ~~~~~~l-k~~i~~la~~k~N~l~l~~ed~~p~~~~--------~-~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+.+...+ .++++.|..+|+|.++|-=-.-+|+.+. . ....+=|.+|+|.+|+.|-++||.||-.+ ++.|
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~-v~nH 241 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW-VPGH 241 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 4454434 5567899999999987532111333322 1 12223489999999999999999999877 4567
Q ss_pred H
Q psy2349 90 M 90 (164)
Q Consensus 90 ~ 90 (164)
+
T Consensus 242 ~ 242 (639)
T PRK14706 242 F 242 (639)
T ss_pred c
Confidence 5
No 37
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.42 E-value=0.63 Score=43.75 Aligned_cols=101 Identities=14% Similarity=0.211 Sum_probs=61.6
Q ss_pred HHHHHHhcCCCEEEEE----ee-c----------cCCCCCC--CCCCCCC----CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2349 29 ILPILAYTGATSLLIE----WE-D----------TLPYSLG--FDNTNPF----RETEIFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~----~e-d----------~~p~~~~--~~~~~~y----T~~dir~iv~yA~~~gI~VIPeid~p 87 (164)
.|+.|+.+|+|+++|- .. + .+.|... ..-...| |.+|+|++|+.|.++||+||=.+ ++
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv-V~ 267 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV-VY 267 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE-Cc
Confidence 5889999999998752 11 0 0111111 1112234 68999999999999999999887 45
Q ss_pred chHHHH--------hc---Cccchhhh--------cCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 88 SDMDFV--------LK---VKEFAKMR--------QNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 88 GH~~~~--------l~---~~~~~~l~--------~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
.|+..- ++ .+.|-.+. ......+.+|..+|.+.+++.+.+.-.
T Consensus 268 NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W 329 (688)
T TIGR02100 268 NHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYW 329 (688)
T ss_pred CCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHH
Confidence 677421 11 01110000 111223578889999999888876655
No 38
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.24 E-value=0.59 Score=43.22 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=46.0
Q ss_pred HHHH-HHHHHHHHhcCCCEEEE-Eeec-----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 23 LTYL-KEILPILAYTGATSLLI-EWED-----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 23 ~~~l-k~~i~~la~~k~N~l~l-~~ed-----~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
...| .++|+.|+.+|+|.++| -+-+ ++.|... .....+=|.+|+|++|+.|.++||.||-.+- +.|+.
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V-~NH~~ 232 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV-PGHFP 232 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec-ccCcC
Confidence 3444 45569999999999876 2211 1223222 1223344899999999999999999998874 67774
No 39
>PRK10785 maltodextrin glucosidase; Provisional
Probab=91.84 E-value=0.69 Score=42.64 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCC------CCCC-C--CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLP------YSLG-F--DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p------~~~~-~--~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
.+.-|.+-||.|+.+|+|.+.|- --|+ |... . -+..+=|.+|++++|+-|.++||+||-.+ ++-|++
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~--Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~-V~NH~~ 252 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLN--PIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG-VFNHTG 252 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeC--CcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCCcCC
Confidence 56888999999999999998652 1111 1111 0 11223388999999999999999999877 345654
No 40
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=91.83 E-value=0.91 Score=38.16 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=43.5
Q ss_pred EEeCCC-CCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 13 HLDLKG-APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 13 ~lD~~r-~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
-+.... .-++++.|++.+.....+..+.=.+.+|++-.+. .+..||.+|+++|.++|+++||.|.=
T Consensus 97 ~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~----GG~~~s~~el~ai~~~a~~~gl~lhm 163 (290)
T PF01212_consen 97 PLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELA----GGTVYSLEELRAISELAREHGLPLHM 163 (290)
T ss_dssp EEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTT----TSB---HHHHHHHHHHHHHHT-EEEE
T ss_pred ECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCC----CCeeCCHHHHHHHHHHHHhCceEEEE
Confidence 333444 6689999999998887744444456777643222 25689999999999999999988853
No 41
>PRK12568 glycogen branching enzyme; Provisional
Probab=90.91 E-value=1 Score=42.78 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=47.8
Q ss_pred CCCHHHH-HHHHHHHHhcCCCEEEEEeeccCCCCCC---------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 20 PPSLTYL-KEILPILAYTGATSLLIEWEDTLPYSLG---------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 20 ~~~~~~l-k~~i~~la~~k~N~l~l~~ed~~p~~~~---------~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+.+...| .++|+.|+.+|+|.+.|-=-..+|+.+. .....+=|.+|+|.+|+.|.++||.||-.+- |.|
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V-~nH 343 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWV-SAH 343 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec-ccc
Confidence 3444444 4568999999999886521111233221 1122344899999999999999999998874 677
Q ss_pred HH
Q psy2349 90 MD 91 (164)
Q Consensus 90 ~~ 91 (164)
+.
T Consensus 344 ~~ 345 (730)
T PRK12568 344 FP 345 (730)
T ss_pred CC
Confidence 64
No 42
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=90.63 E-value=1.4 Score=44.12 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCCEEEEE----eecc-----------CCCCCC--CCCCCCC---CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2349 28 EILPILAYTGATSLLIE----WEDT-----------LPYSLG--FDNTNPF---RETEIFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 28 ~~i~~la~~k~N~l~l~----~ed~-----------~p~~~~--~~~~~~y---T~~dir~iv~yA~~~gI~VIPeid~p 87 (164)
+.|+.|..+|+|.++|- ..+. +-|... ..-...| |.+|+|++|+-|.++||+||-.+ ++
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv-V~ 269 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV-VF 269 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE-cc
Confidence 56789999999998751 1110 012111 1112233 89999999999999999999877 46
Q ss_pred chHHHHhc-----------Cccchhhh--------cCCCCCCcccCCChhhHHHHHHHHHhc-c
Q psy2349 88 SDMDFVLK-----------VKEFAKMR--------QNFNDTRFICPNARSSLDLVFKMIGRM-R 131 (164)
Q Consensus 88 GH~~~~l~-----------~~~~~~l~--------~~~~~~~~l~p~~~~t~~~~~~l~~E~-~ 131 (164)
-|+..--. ...|-.+. ....+.+.+|..++.+.+++.+.++-. .
T Consensus 270 NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 270 NHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred ccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 67752111 00110010 111123467778899888888877766 5
No 43
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=90.63 E-value=1.5 Score=42.17 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEE--ee----ccCCCCCC-C--CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIE--WE----DTLPYSLG-F--DNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~--~e----d~~p~~~~-~--~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
++-++.+.+++.++.++.+|+|.+.+- ++ .+..|... . -+..+=|.+|++.+++-|.++||.||-.| +|-
T Consensus 10 ~~~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi-VpN 88 (825)
T TIGR02401 10 RAGFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI-VPN 88 (825)
T ss_pred CCCCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence 346788899999999999999987541 11 01122111 0 11223389999999999999999999887 477
Q ss_pred hHH
Q psy2349 89 DMD 91 (164)
Q Consensus 89 H~~ 91 (164)
|++
T Consensus 89 H~a 91 (825)
T TIGR02401 89 HMA 91 (825)
T ss_pred ccc
Confidence 775
No 44
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=90.43 E-value=12 Score=35.39 Aligned_cols=135 Identities=10% Similarity=0.053 Sum_probs=82.6
Q ss_pred CCCceeEEEeCCCCC-C----CHHHHHHHHHHHHhcCCCEEEEEe--e---c------cCCCCCCCCC-CCCCCHHHHHH
Q psy2349 6 TFKEVLVHLDLKGAP-P----SLTYLKEILPILAYTGATSLLIEW--E---D------TLPYSLGFDN-TNPFRETEIFI 68 (164)
Q Consensus 6 ~~~~Rg~~lD~~r~~-~----~~~~lk~~i~~la~~k~N~l~l~~--e---d------~~p~~~~~~~-~~~yT~~dir~ 68 (164)
.-+.|.+|+|+---. + +.+.|..+|+.|..+|+|++.|.. . | -||. ..++. ...|++=..
T Consensus 311 ~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp~r~d~f~~~aw-- 387 (671)
T PRK14582 311 KSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLPMRADLFNRVAW-- 387 (671)
T ss_pred CCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccccccCCcCHHHH--
Confidence 345789999874222 2 357899999999999999998876 1 1 2333 11211 234444222
Q ss_pred HHHHHHHcCCeEeeccCCcchHHHHhcCccchhhh--c-----CCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeee
Q psy2349 69 ILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMR--Q-----NFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISP 140 (164)
Q Consensus 69 iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~--~-----~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iH 140 (164)
. .|.++||+|.--+.+.+=.- --+.+.-..++ . .+.....|+|.+|++.++|.+++.|+ .-.+ -.=||
T Consensus 388 ~--l~~r~~v~v~AWmp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~-~dGil 463 (671)
T PRK14582 388 Q--LRTRAGVNVYAWMPVLSFDL-DPTLPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHAA-FDGIL 463 (671)
T ss_pred H--HHHhhCCEEEEeccceeecc-CCCcchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhCC-CceEE
Confidence 2 28899999988777765220 00000000111 0 01112459999999999999999999 6555 66677
Q ss_pred ccCCccCC
Q psy2349 141 LFCPPSAL 148 (164)
Q Consensus 141 iGg~DE~~ 148 (164)
+-- |=+.
T Consensus 464 f~D-d~~l 470 (671)
T PRK14582 464 FHD-DAVL 470 (671)
T ss_pred ecc-cccc
Confidence 765 5443
No 45
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=90.36 E-value=1.9 Score=34.93 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=35.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
|+|+.+++. +.+-++.++.+|++.++|.......+. +..+|.++++++-+.++++||+|.
T Consensus 3 g~~~~~~~~------~~~~~~~~~~~G~~~vel~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~gl~ls 62 (273)
T smart00518 3 GAHVSAAGG------LYKAFIEAVDIGARSFQLFLGNPRSWK-----GVRLSEETAEKFKEALKENNIDVS 62 (273)
T ss_pred eEEEcccCc------HhHHHHHHHHcCCCEEEEECCCCCCCC-----CCCCCHHHHHHHHHHHHHcCCCEE
Confidence 667776642 556777777788887777555432111 124555666666666666666543
No 46
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=90.30 E-value=1.3 Score=40.49 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEe---ec--cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEW---ED--TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~---ed--~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
++..+.+-++.|+.+|+|+++|-= .. ...|... -.+..+=|.+|++++|+-|.++||.||-.+ ++-|++
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~-V~NH~s 107 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM-VFNHTS 107 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCCCcc
Confidence 577788889999999999987521 00 1122211 112334489999999999999999999887 456653
No 47
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=90.08 E-value=1.2 Score=42.48 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=65.6
Q ss_pred CHHH-HHHHHHHHHhcCCCEEEEEe--ec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 22 SLTY-LKEILPILAYTGATSLLIEW--ED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 22 ~~~~-lk~~i~~la~~k~N~l~l~~--ed----~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
+... .++.|+.++.+|+|.++|-= +. ++-|... ..+..+=|.+|+|++|+.|.++||.||=.+ ++.|+.
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv-V~nH~~ 326 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV-VHSHAS 326 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccccc
Confidence 3344 46789999999999987531 11 1222221 112223388999999999999999999776 577774
Q ss_pred HH----hcC-----ccchhhh-cC---CCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 92 FV----LKV-----KEFAKMR-QN---FNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 92 ~~----l~~-----~~~~~l~-~~---~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
.- +.. +.|-... .. ......+|-.++++.+|+.+.++-.
T Consensus 327 ~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~W 378 (758)
T PLN02447 327 KNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWW 378 (758)
T ss_pred ccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHH
Confidence 21 110 1111000 00 0112357888899988888876655
No 48
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=89.85 E-value=0.68 Score=38.28 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
-.++.++..++++.|+++|..|+|||=
T Consensus 108 i~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 108 IDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp S---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred eeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 478899999999999999999999996
No 49
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=89.78 E-value=1.9 Score=41.67 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEE-e-e----ccCCCCCC-C--CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIE-W-E----DTLPYSLG-F--DNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~-~-e----d~~p~~~~-~--~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
++-++.+.+.+.++.++.+|+|.+.+- + + .+..|... . -+...=|.+|++++++-|+++||.||=.| +|-
T Consensus 14 ~~~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDi-V~N 92 (879)
T PRK14511 14 HAGFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDI-VPN 92 (879)
T ss_pred CCCCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence 345788999999999999999987641 0 0 01112111 1 11222288999999999999999999877 456
Q ss_pred hHH
Q psy2349 89 DMD 91 (164)
Q Consensus 89 H~~ 91 (164)
|++
T Consensus 93 H~~ 95 (879)
T PRK14511 93 HMA 95 (879)
T ss_pred ccc
Confidence 664
No 50
>PLN02960 alpha-amylase
Probab=89.31 E-value=1.5 Score=42.36 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=65.8
Q ss_pred CCCHHHHH-HHHHHHHhcCCCEEEEE-eec-----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 20 PPSLTYLK-EILPILAYTGATSLLIE-WED-----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 20 ~~~~~~lk-~~i~~la~~k~N~l~l~-~ed-----~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+-+...+. ++|+.|+.+|+|.++|- +-+ ++-|... .....+=|.+|++.+|+.|-++||.||-.+ ++.|
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv-V~NH 490 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI-VHSY 490 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 34555664 77999999999998752 111 1112211 122334489999999999999999999887 4677
Q ss_pred HHH----HhcC----c-cchhh--h--cCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 90 MDF----VLKV----K-EFAKM--R--QNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 90 ~~~----~l~~----~-~~~~l--~--~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
+.. .|.. + .|-.. . ........+|-.++++.+|+.+.+.-.
T Consensus 491 ~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yW 544 (897)
T PLN02960 491 AAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWW 544 (897)
T ss_pred cCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHH
Confidence 642 1210 0 01100 0 001123457888888888887754433
No 51
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=89.29 E-value=2.1 Score=42.09 Aligned_cols=111 Identities=10% Similarity=0.012 Sum_probs=72.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH-----
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF----- 92 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~----- 92 (164)
+...+.+.+++.|.+|..+|+|.++.+ .+|.. ....+.|.++||-|+-|+++-+|.-.
T Consensus 349 G~a~~~e~~~~dl~lmK~~g~NavR~s---HyP~~--------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~ 411 (1021)
T PRK10340 349 GRAVGMDRVEKDIQLMKQHNINSVRTA---HYPND--------------PRFYELCDIYGLFVMAETDVESHGFANVGDI 411 (1021)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEec---CCCCC--------------HHHHHHHHHCCCEEEECCcccccCccccccc
Confidence 556788999999999999999999874 23322 25678999999999999998777521
Q ss_pred --HhcCccchh-----h----hcCCC--CCCcccCCChhhH-HHHHHHHHhc-ccCCCCCeeeccCCccC
Q psy2349 93 --VLKVKEFAK-----M----RQNFN--DTRFICPNARSSL-DLVFKMIGRM-RFVLGTPISPLFCPPSA 147 (164)
Q Consensus 93 --~l~~~~~~~-----l----~~~~~--~~~~l~p~~~~t~-~~~~~l~~E~-~lf~~s~~iHiGg~DE~ 147 (164)
....|++.. + +...+ +--..+.+|+..+ .-+..|.+-+ ++=| ++.+|..| |..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g~~~~~~~~~~k~~Dp-tR~v~~~~-~~~ 479 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDD-TRLVHYEE-DRD 479 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccHHHHHHHHHHHHhCC-CceEEeCC-CcC
Confidence 111232311 1 11111 1124555666422 2336777777 8888 89999988 754
No 52
>PRK03705 glycogen debranching enzyme; Provisional
Probab=89.20 E-value=1.8 Score=40.54 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=61.0
Q ss_pred HHHHHHhcCCCEEEEE----e-ec----------cCCCCCC--CCCCCCC-C-----HHHHHHHHHHHHHcCCeEeeccC
Q psy2349 29 ILPILAYTGATSLLIE----W-ED----------TLPYSLG--FDNTNPF-R-----ETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~----~-ed----------~~p~~~~--~~~~~~y-T-----~~dir~iv~yA~~~gI~VIPeid 85 (164)
.|+.|+.+|+|+++|- . +. .+.|... ..-...| | .+|+|++|+-|.++||+||-.+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv- 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV- 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE-
Confidence 4889999999998752 1 00 0111111 1112233 2 4799999999999999999887
Q ss_pred CcchHHHH--------hc---Cccchhhh------cCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 86 LYSDMDFV--------LK---VKEFAKMR------QNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 86 ~pGH~~~~--------l~---~~~~~~l~------~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
++-|+... ++ .+.|-.+. ....+.+.+|..+|.+.+++.+.++-.
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W 324 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYW 324 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHH
Confidence 45676531 11 01110001 111233578889999999998887755
No 53
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.88 E-value=1.7 Score=35.83 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
-.++.++..++|+.++++|..|+||+=.
T Consensus 95 ~~i~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 95 MEISLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred cCCCHHHHHHHHHHHHhCCCeEeccccc
Confidence 3688999999999999999999999854
No 54
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=88.38 E-value=2.1 Score=38.88 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCC-------CCCC-C--CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLP-------YSLG-F--DNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p-------~~~~-~--~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
.=++..|.+-|+.|+.+|+|+++|- --|+ |... . ....+=|.+|++++|+-|.++||.||=.+ ++.|
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~--Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~-V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLL--PFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL-VLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEEC--CCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe-ccCc
Confidence 3467788889999999999998652 1122 2111 0 11223378999999999999999999776 4566
Q ss_pred H
Q psy2349 90 M 90 (164)
Q Consensus 90 ~ 90 (164)
+
T Consensus 101 ~ 101 (539)
T TIGR02456 101 T 101 (539)
T ss_pred C
Confidence 5
No 55
>PRK09505 malS alpha-amylase; Reviewed
Probab=87.93 E-value=2.5 Score=39.87 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEE--eec-----------cCC---CCCCC------CCCCCCCHHHHHHHHHHHHHcCCe
Q psy2349 22 SLTYLKEILPILAYTGATSLLIE--WED-----------TLP---YSLGF------DNTNPFRETEIFIILAAAESNGLA 79 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~--~ed-----------~~p---~~~~~------~~~~~yT~~dir~iv~yA~~~gI~ 79 (164)
++..|.+-|+.|+.+|+|.+.|- ++. ++| |-+.. .+..+=|.+|++++|+-|.++||.
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 47778888999999999999752 121 122 21211 112334899999999999999999
Q ss_pred EeeccCCcchHH
Q psy2349 80 SIPLVPLYSDMD 91 (164)
Q Consensus 80 VIPeid~pGH~~ 91 (164)
||=.+- +-|++
T Consensus 308 VilD~V-~NH~~ 318 (683)
T PRK09505 308 ILFDVV-MNHTG 318 (683)
T ss_pred EEEEEC-cCCCc
Confidence 998763 45554
No 56
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=87.61 E-value=2.5 Score=37.28 Aligned_cols=118 Identities=14% Similarity=0.037 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCC--------CCCCC-CCCCCCCHHHHHHHHHHHHHcCCe----EeeccCC
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLP--------YSLGF-DNTNPFRETEIFIILAAAESNGLA----SIPLVPL 86 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p--------~~~~~-~~~~~yT~~dir~iv~yA~~~gI~----VIPeid~ 86 (164)
-++-+.|+++++.++.+|++.++|. |.+- --|+| .+...+ +.=++.|+++.+++|+. +-||.=.
T Consensus 54 d~~e~~i~~~a~~~~~~G~e~fviD--DGW~~~r~~d~~~~GdW~~~~~kF-P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 54 DITEEKILELADAAAELGYEYFVID--DGWFGGRDDDNAGLGDWEPDPKKF-PNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp G--HHHHHHHHHHHHHHT-SEEEE---SSSBCTESTTTSTTSBECBBTTTS-TTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHhCCEEEEEc--CccccccCCCcccCCceeEChhhh-CCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 3678999999999999999987664 3221 11221 222233 23599999999999877 4565533
Q ss_pred cc------hHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeeccC
Q psy2349 87 YS------DMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPLFC 143 (164)
Q Consensus 87 pG------H~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHiGg 143 (164)
++ |-+|+++.+..... .....-+||+++|++.+++.+.+..+ .-.. -.||=+-+
T Consensus 131 ~~S~l~~~hPdw~l~~~~~~~~--~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g-idYiK~D~ 191 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPGRPPT--LGRNQYVLDLSNPEVRDYLFEVIDRLLREWG-IDYIKWDF 191 (394)
T ss_dssp SSSCHCCSSBGGBTCCTTSE-E--CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT--SEEEEE-
T ss_pred chhHHHHhCccceeecCCCCCc--CcccceEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEecc
Confidence 32 44444443221111 11122369999999999999988887 5454 66665544
No 57
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=87.58 E-value=6.2 Score=30.49 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeec-----cCCCCCCCCCCCCC--CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2349 19 APPSLTYLKEILPILAYTGATSLLIEWED-----TLPYSLGFDNTNPF--RETEIFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~l~~ed-----~~p~~~~~~~~~~y--T~~dir~iv~yA~~~gI~VIPeid~p 87 (164)
.-++.+.=.+.+..|...|+++|.+.++. .+|-. +.+.+.+ +.+=|..+++.|.+.|+.|+.-+..-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~--~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSK--LSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCcc--ccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 35788888999999999999999998863 22322 2122222 45678999999999999999877643
No 58
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=87.43 E-value=0.82 Score=38.95 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEE--eeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~--~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
+.++-.+.+..|.+.|+|++..+ |...-|..+.+.=.+ ..|++..++.|++.|+-||--+--.-|++
T Consensus 22 p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g---~~dl~~f~~~a~~~gl~vilrpGpyi~aE 90 (319)
T PF01301_consen 22 PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTG---NRDLDRFLDLAQENGLYVILRPGPYICAE 90 (319)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SG---GG-HHHHHHHHHHTT-EEEEEEES---TT
T ss_pred ChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccc---hhhHHHHHHHHHHcCcEEEecccceeccc
Confidence 37888999999999999999855 444344444411001 37999999999999999886544444443
No 59
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=86.77 E-value=1.6 Score=36.22 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=64.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh--
Q psy2349 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL-- 94 (164)
Q Consensus 17 ~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l-- 94 (164)
.+..++.+.+++-|.+|..+|+|.++++ .+|. + .+..+.|.+.||-|+.|+...||..+-.
T Consensus 29 ~g~a~~~~~~~~d~~l~k~~G~N~iR~~---h~p~----------~----~~~~~~cD~~GilV~~e~~~~~~~~~~~~~ 91 (298)
T PF02836_consen 29 LGRAMPDEAMERDLELMKEMGFNAIRTH---HYPP----------S----PRFYDLCDELGILVWQEIPLEGHGSWQDFG 91 (298)
T ss_dssp TBT---HHHHHHHHHHHHHTT-SEEEET---TS------------S----HHHHHHHHHHT-EEEEE-S-BSCTSSSSTS
T ss_pred ccccCCHHHHHHHHHHHHhcCcceEEcc---cccC----------c----HHHHHHHhhcCCEEEEeccccccCccccCC
Confidence 3556788999999999999999999872 1221 1 4678899999999999998877653321
Q ss_pred ------cCccchh-----hhc----CCC--CCCcccCCCh-hhHHHHHHHHHhc-ccCCCCCeeeccCCc
Q psy2349 95 ------KVKEFAK-----MRQ----NFN--DTRFICPNAR-SSLDLVFKMIGRM-RFVLGTPISPLFCPP 145 (164)
Q Consensus 95 ------~~~~~~~-----l~~----~~~--~~~~l~p~~~-~t~~~~~~l~~E~-~lf~~s~~iHiGg~D 145 (164)
..+++.+ +++ ..+ +-=..++.|+ ....++++|.+-+ ++-| ++.++.+. +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~~~~~~~~l~~~~k~~Dp-tRpv~~~~-~ 159 (298)
T PF02836_consen 92 NCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESDYREFLKELYDLVKKLDP-TRPVTYAS-N 159 (298)
T ss_dssp CTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSHHHHHHHHHHHHHHHH-T-TSEEEEET-G
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCccccchhHHHHHHHhcCC-CCceeecc-c
Confidence 1233221 111 111 1112333343 4556777888878 8888 88888877 5
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=85.91 E-value=2.4 Score=36.92 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=43.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~--l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
|+-+=.... +.+..++.|..|+.+|++.+. ||+-.. ...-..+++++|+++|+++|++||..|.
T Consensus 3 GiSvY~~~~--~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~---------~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 3 GISVYPGQS--SFEENKAYIEKAAKYGFKRIFTSLHIPED---------DPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp EEEE-CCCS---HHHHHHHHHHHHCTTEEEEEEEE------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred EEEEeCCCC--CHHHHHHHHHHHHHCCCCEEECCCCcCCC---------CHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 444444443 788999999999999998875 443221 1234578999999999999999999886
No 61
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=84.59 E-value=16 Score=34.63 Aligned_cols=133 Identities=13% Similarity=0.024 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEE-Eee--ccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc-CCcchHHHHhc-C
Q psy2349 22 SLTYLKEILPILAYTGATSLLI-EWE--DTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV-PLYSDMDFVLK-V 96 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l-~~e--d~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei-d~pGH~~~~l~-~ 96 (164)
+-+++++-|+.|...|+|.+.+ ++. -.-|-++. --+|.-|.. .++-|.+.|+.||--= .+.++.+|..+ +
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~----fdf~~~D~~-~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~ 102 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGK----FDFTWLDEI-FLERAYKAGLYVILRTGPTGAPPAWLAKKY 102 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccc----cCcccchHH-HHHHHHhcCceEEEecCCCCCCchHHhcCC
Confidence 3489999999999999999987 542 22243333 122333444 6999999999999665 57888888875 5
Q ss_pred ccchhhhc-----CCCCCCcccCCChhhHHHHHHHHHhc-cc-C---CCCCeeeccCCccCCC-CCCCHHHHHHHH
Q psy2349 97 KEFAKMRQ-----NFNDTRFICPNARSSLDLVFKMIGRM-RF-V---LGTPISPLFCPPSALN-FGTCRDDKISVV 161 (164)
Q Consensus 97 ~~~~~l~~-----~~~~~~~l~p~~~~t~~~~~~l~~E~-~l-f---~~s~~iHiGg~DE~~~-~~~~~~~~~~m~ 161 (164)
|+.-.-.+ .......+|++++-=.+.+..|+..+ +- . |.---+|+-- |+.. -..|..|++..+
T Consensus 103 PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn--eY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 103 PEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN--EYGGHPCYCDYCQAAFR 176 (673)
T ss_pred hhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC--ccCCccccccccHHHHH
Confidence 66532211 12234579999996666777766666 43 3 3334455543 5443 256888877543
No 62
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=84.46 E-value=2.8 Score=32.66 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeecc------------CCCC--C--C------------CCCCCCCCHHHHHHHHHHH
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDT------------LPYS--L--G------------FDNTNPFRETEIFIILAAA 73 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~------------~p~~--~--~------------~~~~~~yT~~dir~iv~yA 73 (164)
+.+.+.++++.+...|++.+++.+.+. +|-. + . ......-+.....++++++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~~ 93 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKAA 93 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHH
Confidence 467788888889899999888876532 2200 0 0 1112222333446799999
Q ss_pred HHcCCeEeeccCCcchHHHHhcC-ccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeeccC
Q psy2349 74 ESNGLASIPLVPLYSDMDFVLKV-KEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPLFC 143 (164)
Q Consensus 74 ~~~gI~VIPeid~pGH~~~~l~~-~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHiGg 143 (164)
+++|+.+||++.++......+.. .+|-+ +.|..+...+ .++++ ..||..+.+=+||
T Consensus 94 ~~~~~~~i~gv~t~~e~~~A~~~Gad~i~----------~~p~~~~g~~----~~~~l~~~~~~~p~~a~GG 151 (190)
T cd00452 94 NRAGIPLLPGVATPTEIMQALELGADIVK----------LFPAEAVGPA----YIKALKGPFPQVRFMPTGG 151 (190)
T ss_pred HHcCCcEECCcCCHHHHHHHHHCCCCEEE----------EcCCcccCHH----HHHHHHhhCCCCeEEEeCC
Confidence 99999999999999887666542 22322 2334443444 45555 6666578888888
No 63
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.31 E-value=14 Score=29.62 Aligned_cols=108 Identities=9% Similarity=0.052 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCC----------CCC--C--CCCCCCCCHHHHH-----------------HHH
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLP----------YSL--G--FDNTNPFRETEIF-----------------IIL 70 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p----------~~~--~--~~~~~~yT~~dir-----------------~iv 70 (164)
+.+...++.+.|..-|+..+-+-|..... |.. + +..+..+|.+|++ +|+
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~ 102 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRETA 102 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 67888999999999999988776642110 211 1 4445677888776 789
Q ss_pred HHHHHcCCeEeeccCCcchHHHHhcC-ccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeeccC
Q psy2349 71 AAAESNGLASIPLVPLYSDMDFVLKV-KEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPLFC 143 (164)
Q Consensus 71 ~yA~~~gI~VIPeid~pGH~~~~l~~-~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHiGg 143 (164)
++|+++||-+||-.-+|.-....+.+ .+|-++ -|+..-..+ .++.+ ..||.-+++=+||
T Consensus 103 ~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vkl----------FPa~~~G~~----~ik~l~~~~p~ip~~atGG 163 (213)
T PRK06552 103 KICNLYQIPYLPGCMTVTEIVTALEAGSEIVKL----------FPGSTLGPS----FIKAIKGPLPQVNVMVTGG 163 (213)
T ss_pred HHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEE----------CCcccCCHH----HHHHHhhhCCCCEEEEECC
Confidence 99999999999999999888766542 223222 122222233 35556 6677678888888
No 64
>PRK10150 beta-D-glucuronidase; Provisional
Probab=84.08 E-value=8.9 Score=35.23 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2349 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 17 ~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~p 87 (164)
.+..++.+.+++-+.+|..+|+|.+++. .+|.. .++.+.|.+.||-|+-|+.+-
T Consensus 306 ~G~a~~~~~~~~d~~l~K~~G~N~vR~s---h~p~~--------------~~~~~~cD~~GllV~~E~p~~ 359 (604)
T PRK10150 306 RGKGLDEVLNVHDHNLMKWIGANSFRTS---HYPYS--------------EEMLDLADRHGIVVIDETPAV 359 (604)
T ss_pred cCCcCCHHHHHHHHHHHHHCCCCEEEec---cCCCC--------------HHHHHHHHhcCcEEEEecccc
Confidence 3556888888999999999999999872 23322 267899999999999998754
No 65
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=83.49 E-value=7.4 Score=32.42 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL 94 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l 94 (164)
-+++.+++.++.+...|.+.+-+..+....-...-.....+|.++++.+++.|+++|+.|.--.........++
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l 190 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAI 190 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 34778899999999999999988775321000001112378999999999999999999886655444444443
No 66
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.51 E-value=0.89 Score=34.59 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCC--CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGF--DNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~--~~~~~yT~~dir~iv~yA~~~gI~VIPeid~p 87 (164)
++.+++.++.++.+|+..+.++... ++..... ...-....+-+++|.++|+++||+|.-|--..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR-YPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT-ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc-cccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 7899999999999999999887541 1111110 00112345578999999999999999885443
No 67
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=81.62 E-value=18 Score=30.30 Aligned_cols=110 Identities=10% Similarity=0.040 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeccC-CCCCCC-CCCCCCCHHHHHHHHHHHHHcCCeEeeccCC---cch---H
Q psy2349 19 APPSLTYLKEILPILAYTGATSLLIEWEDTL-PYSLGF-DNTNPFRETEIFIILAAAESNGLASIPLVPL---YSD---M 90 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~-p~~~~~-~~~~~yT~~dir~iv~yA~~~gI~VIPeid~---pGH---~ 90 (164)
...+-+.|.++++.+...++..=.+.+++.+ .-.+.+ -+...+- +.+++++.-+++|++++.-|+= +.+ .
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~ 102 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVHPFINTDSENFR 102 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCC--CHHHHHHHHHHCCCeEEEEECCeeCCCCHHHH
Confidence 4577889999999999999753333443322 111221 1122332 5899999999999999986652 111 1
Q ss_pred H-----HHhcCccc--hhh-hcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 91 D-----FVLKVKEF--AKM-RQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 91 ~-----~~l~~~~~--~~l-~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
+ .+++.+.- ... +........+|.+||++.++..+.++++
T Consensus 103 e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 150 (303)
T cd06592 103 EAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSL 150 (303)
T ss_pred hhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHH
Confidence 1 01111100 000 0001224579999999999999988776
No 68
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=81.45 E-value=14 Score=30.91 Aligned_cols=110 Identities=6% Similarity=-0.099 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCC--CC-CC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC------Ccch
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLP--YS-LG-FDNTNPFRETEIFIILAAAESNGLASIPLVP------LYSD 89 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p--~~-~~-~~~~~~yT~~dir~iv~yA~~~gI~VIPeid------~pGH 89 (164)
..+-+.++++++.+++.++..=.+.+++.+- +. +. .-+...+- |.+.+++..+++|+.|+.-++ .+-+
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FP--d~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~ 97 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFP--DPEGMLSRLKEKGFKVCLWINPYIAQKSPLF 97 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCC--CHHHHHHHHHHCCCeEEEEecCCCCCCchhH
Confidence 4788899999999999997544444443221 11 11 11122232 578999999999999998765 2211
Q ss_pred HHH-----HhcCccchh--hhcCCCCCCcccCCChhhHHHHHHHHHhc-c
Q psy2349 90 MDF-----VLKVKEFAK--MRQNFNDTRFICPNARSSLDLVFKMIGRM-R 131 (164)
Q Consensus 90 ~~~-----~l~~~~~~~--l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~ 131 (164)
.+. +++.+.-.. ....+.....+|.+||++.++..+.++++ +
T Consensus 98 ~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 98 KEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred HHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 111 111110000 00111234679999999999999999887 5
No 69
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=81.19 E-value=4.2 Score=32.64 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
.+.+++.|+.++.+|...+.+..... |.............+-++++.++|+++||.+.-|-
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~-~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR-PAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 57889999999999999887643211 11100000002234569999999999999999884
No 70
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=81.16 E-value=8.1 Score=40.10 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCC--------CCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLP--------YSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p--------~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
+.-.+.+.+.+.++.++.+|+|.+.+ +--|. |... -.+..+=|.+|++.+++-|.++||.||=.| +
T Consensus 752 ~~~~tf~~~~~~l~Yl~~LGv~~i~l--sPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDi-V 828 (1693)
T PRK14507 752 HKDFTFADAEAILPYLAALGISHVYA--SPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDI-V 828 (1693)
T ss_pred CCCCCHHHHHHHhHHHHHcCCCEEEE--CCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe-c
Confidence 34678899999999999999998754 22221 1111 011223389999999999999999999877 4
Q ss_pred cchHH
Q psy2349 87 YSDMD 91 (164)
Q Consensus 87 pGH~~ 91 (164)
|-|++
T Consensus 829 ~NH~~ 833 (1693)
T PRK14507 829 PNHMG 833 (1693)
T ss_pred ccccC
Confidence 67775
No 71
>KOG0256|consensus
Probab=80.25 E-value=14 Score=33.06 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=49.0
Q ss_pred eEEEeCCCCC-CCHHHHHHHHHHHHhcCCCEEEEEeec-cCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 11 LVHLDLKGAP-PSLTYLKEILPILAYTGATSLLIEWED-TLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 11 g~~lD~~r~~-~~~~~lk~~i~~la~~k~N~l~l~~ed-~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
-||++-+..| .+++.|+.-+.+....+.+.=-+-+.. +-|. +..||++++..++.+|.+.+|.||-
T Consensus 197 pv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPL------G~~~~~e~L~~ll~Fa~~kniHvI~ 264 (471)
T KOG0256|consen 197 PVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPL------GTTLSPEELISLLNFASRKNIHVIS 264 (471)
T ss_pred EEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCC------CCccCHHHHHHHHHHHhhcceEEEe
Confidence 4677777665 899999999988877766533333322 1122 4699999999999999999999874
No 72
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=80.23 E-value=9.9 Score=33.24 Aligned_cols=125 Identities=10% Similarity=0.039 Sum_probs=71.1
Q ss_pred CCCCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCC-CC-CCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 5 STFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSL-GF-DNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 5 P~~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~-~~-~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
|+++. |+++ ..-...+.+.++++++.+...++--=.+.+++.+--.. .+ -++..+- +.+++++..+++|+++++
T Consensus 26 P~wal-G~~~-~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FP--d~~~~~~~l~~~G~~~~~ 101 (441)
T PF01055_consen 26 PRWAL-GFWQ-SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFP--DPKQMIDELHDQGIKVVL 101 (441)
T ss_dssp -GGGG-SEEE-EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTT--THHHHHHHHHHTT-EEEE
T ss_pred chhhh-ceEe-ecCcCCCHHHHHHHHHHHHHcCCCccceecccccccccccccccccccc--chHHHHHhHhhCCcEEEE
Confidence 45555 8888 33334678999999999999998644444443321110 11 1122332 889999999999999997
Q ss_pred ccCCcchHHHHhcCccchhhhc-----------------CCCCCCcccCCChhhHHHHHHHHHhc-ccCC
Q psy2349 83 LVPLYSDMDFVLKVKEFAKMRQ-----------------NFNDTRFICPNARSSLDLVFKMIGRM-RFVL 134 (164)
Q Consensus 83 eid~pGH~~~~l~~~~~~~l~~-----------------~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~ 134 (164)
-++--=....- ..+.|....+ .+.....+|.+||++.++..+.++++ ....
T Consensus 102 ~~~P~v~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G 170 (441)
T PF01055_consen 102 WVHPFVSNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG 170 (441)
T ss_dssp EEESEEETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST
T ss_pred EeecccCCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC
Confidence 76542222110 0001111100 01124579999999999999999988 6644
No 73
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=80.08 E-value=5 Score=32.57 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=45.3
Q ss_pred CceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 8 KEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 8 ~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+.-|+++|....- ..+-+.+++....++.-+.+.+-. .-..++|++|+.++.+|+....+.|+=
T Consensus 133 Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv----------Nl~~YLt~eei~el~~~i~~~~~~vll 196 (216)
T TIGR01866 133 KALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI----------NSGAFLTKDELAELQKFISYTKLTVLF 196 (216)
T ss_pred HhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE----------cHHHhCCHHHHHHHHHHHHHhcccEEE
Confidence 3457777775544 556666777777766666554322 124799999999999999999998873
No 74
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.30 E-value=7 Score=32.39 Aligned_cols=25 Identities=36% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 61 FRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 61 yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
+..+|++++++.|+++|+..|+.+-
T Consensus 126 Lp~ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 126 LPPEEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4568999999999999999998653
No 75
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=78.74 E-value=3.6 Score=33.60 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
++.+++.|+..+.+|.+.+.+.-.. .++.......-....+-+++++++|+++||++.=|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYD-VYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcc-cccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 4578999999999999988763211 111100000012345778999999999999999883
No 76
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=78.29 E-value=10 Score=30.63 Aligned_cols=62 Identities=16% Similarity=-0.001 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
++.+++.|+..+.+|+..+.++.... .+.......---..+-+++|.++|+++||++.-|--
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHA-GYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 56889999999999999987753211 010000000011223589999999999999987743
No 77
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=78.14 E-value=8.8 Score=38.26 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEE-e-e----c----------------c--CCCCCC--CCCCCCC---------CHHH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIE-W-E----D----------------T--LPYSLG--FDNTNPF---------RETE 65 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~-~-e----d----------------~--~p~~~~--~~~~~~y---------T~~d 65 (164)
=+...|.+-|+.|+.+|+|.++|- + + + . +.|... ..-.+.| +.+|
T Consensus 477 Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 477 GTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAE 556 (1111)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHH
Confidence 355667777899999999999752 1 1 0 0 111111 1112233 3589
Q ss_pred HHHHHHHHHHcCCeEeeccCCcchHHHH--hc--Cccchhhh-c-----CCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 66 IFIILAAAESNGLASIPLVPLYSDMDFV--LK--VKEFAKMR-Q-----NFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 66 ir~iv~yA~~~gI~VIPeid~pGH~~~~--l~--~~~~~~l~-~-----~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
+|++|+.|-++||+||-.+ ++-|+... +. .|.|-... . ...+.+.++..++.+.+++.+.+.-.
T Consensus 557 fK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yW 630 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYL 630 (1111)
T ss_pred HHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999876 46777421 11 12221110 0 01123455666677766666655444
No 78
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=77.75 E-value=2.9 Score=30.24 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=37.1
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-e
Q psy2349 13 HLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-P 82 (164)
Q Consensus 13 ~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI-P 82 (164)
-+|++--+.+.+.+-++++.+...|...+++.-. ++-.+++++|++.|++|+ |
T Consensus 55 ~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g-----------------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 55 PIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG-----------------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp T-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT-----------------S--HHHHHHHHHTT-EEEES
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc-----------------hHHHHHHHHHHHcCCEEEeC
Confidence 3555555667788999999999999999877433 556789999999999998 5
No 79
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.71 E-value=8.6 Score=31.14 Aligned_cols=58 Identities=12% Similarity=0.014 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
++.--.+.+.++.++.+|+.++.+...+.. . ......+|.++++++.+.++++||+|.
T Consensus 12 ~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~---~-~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 12 LPKHLSWEERLVFAKELGFDFVEMSVDESD---E-RLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred cCCCCCHHHHHHHHHHcCCCeEEEecCCcc---c-ccccccCCHHHHHHHHHHHHHcCCCce
Confidence 333345889999999999999987543210 0 011235688999999999999999876
No 80
>PLN02591 tryptophan synthase
Probab=77.54 E-value=8.9 Score=31.67 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHcCCeEeecc-CCcch
Q psy2349 61 FRETEIFIILAAAESNGLASIPLV-PLYSD 89 (164)
Q Consensus 61 yT~~dir~iv~yA~~~gI~VIPei-d~pGH 89 (164)
+..+|..++.+.|+++||..|+.+ .+...
T Consensus 115 LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~ 144 (250)
T PLN02591 115 LPLEETEALRAEAAKNGIELVLLTTPTTPT 144 (250)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCCCCH
Confidence 556999999999999999999999 55544
No 81
>KOG3698|consensus
Probab=77.33 E-value=2.3 Score=39.56 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHH---HHHHHHHHHHHcCCeEeecc
Q psy2349 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRET---EIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 17 ~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~---dir~iv~yA~~~gI~VIPei 84 (164)
=|.+++.+.=|++++++..+|+|+..--=.|.|-....|+ .-||.+ .++.|++.|+++||+.|=-|
T Consensus 26 YGRPWt~EQRK~LFrrl~~~gl~tYlYAPKDDyKHR~~WR--ElY~vEEa~~L~~Li~aAke~~i~F~YAi 94 (891)
T KOG3698|consen 26 YGRPWTPEQRKHLFRRLNQLGLTTYLYAPKDDYKHRSLWR--ELYNVEEATYLRNLIEAAKENNINFVYAI 94 (891)
T ss_pred cCCCCCHHHHHHHHHHHHhcccceeeecccchhHHHHHHH--HHhhhHHHHHHHHHHHHHHhcCceEEEEc
Confidence 3788999999999999999999964221122211111133 567765 57889999999999987544
No 82
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=77.28 E-value=8.1 Score=33.15 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+..++.+.++++|+.++..|...+ .+.. +..+...|+.+|+++++++|+.+ .+.|=|.
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~~~v--~~~G----------GEPll~~~~~~il~~~~~~g~~~--~i~TNG~ 100 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGALQL--HFSG----------GEPLLRKDLEELVAHARELGLYT--NLITSGV 100 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCCcEE--EEEC----------CccCCchhHHHHHHHHHHcCCcE--EEECCCc
Confidence 456889999999999999886544 3322 34444556777777777776543 3555554
No 83
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=77.04 E-value=16 Score=29.38 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCC----------CCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSL----------GFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~----------~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
-+.+.++++.+.++.++.+.+ |+---.|+.. .+.+....++++++++.+.|+++|+.++
T Consensus 142 d~~e~i~~ia~~l~~l~~~~~--~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 142 LSRENMQQALDVLIPLGIKQI--HLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CCHHHHHHHHHHHHHcCCceE--EEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 356778888888887766644 3322222211 1333456799999999999999999985
No 84
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=76.49 E-value=8.3 Score=32.74 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+..++.+.++++++.+..+|...+ .+.. +..+-..|+.+|+++|+++|+.+ .+.|-|.
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~~v--~~~G----------GEPll~~~~~~ii~~~~~~g~~~--~l~TNG~ 91 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVLQL--HFSG----------GEPLARPDLVELVAHARRLGLYT--NLITSGV 91 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCcEE--EEeC----------ccccccccHHHHHHHHHHcCCeE--EEEeCCc
Confidence 456889999999999999887554 3322 23344456777777777777643 4555554
No 85
>PRK15447 putative protease; Provisional
Probab=75.45 E-value=9 Score=32.26 Aligned_cols=100 Identities=6% Similarity=-0.005 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE---eeccC-CcchHHHHhc
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS---IPLVP-LYSDMDFVLK 95 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~V---IPeid-~pGH~~~~l~ 95 (164)
+++...+..++..++.-|+..+.+-. ..|+. + ..+|.+|+++++++|+++|.+| +|-|- .+.....+.+
T Consensus 11 ~~p~~~~~~~~~~~~~~gaDaVY~g~-~~~~~----R--~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~ 83 (301)
T PRK15447 11 YWPKETVRDFYQRAADSPVDIVYLGE-TVCSK----R--RELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRR 83 (301)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEECC-ccCCC----c--cCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHH
Confidence 35667788999999999999886652 22221 2 2589999999999999999998 56664 3655543322
Q ss_pred Ccc----------ch---hhhcCC---CCCCcccCCChhhHHHHHHH
Q psy2349 96 VKE----------FA---KMRQNF---NDTRFICPNARSSLDLVFKM 126 (164)
Q Consensus 96 ~~~----------~~---~l~~~~---~~~~~l~p~~~~t~~~~~~l 126 (164)
.-+ +. -+++.. ....++|..|..+.+|+.++
T Consensus 84 ~l~~~~~~v~v~d~g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~ 130 (301)
T PRK15447 84 LVENGEFLVEANDLGAVRLLAERGLPFVAGPALNCYNAATLALLARL 130 (301)
T ss_pred HHhcCCCEEEEeCHHHHHHHHhcCCCEEEecccccCCHHHHHHHHHc
Confidence 100 00 011111 12468899999999999886
No 86
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=75.14 E-value=19 Score=29.72 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=33.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES 75 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~ 75 (164)
.-+.|..| .+.+++.++++.+...|+..+ .+.|+. |..+++++++++...++
T Consensus 127 ~~~~~a~~--~~~~~~~~~~~~~~~~g~~~i--~l~DT~---------G~~~P~~v~~lv~~l~~ 178 (266)
T cd07944 127 FNLMAISG--YSDEELLELLELVNEIKPDVF--YIVDSF---------GSMYPEDIKRIISLLRS 178 (266)
T ss_pred EEEEeecC--CCHHHHHHHHHHHHhCCCCEE--EEecCC---------CCCCHHHHHHHHHHHHH
Confidence 33444444 456666666666666666643 444443 67788888888887765
No 87
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=74.58 E-value=23 Score=30.41 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=41.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
+...|. +..+++++.+++..+..+|++. +++.|++ |.++++++++++...++.
T Consensus 133 ~~l~~a--~~~~~e~l~~~a~~~~~~Ga~~--i~i~DT~---------G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 133 GFLMMS--HMAPPEKLAEQAKLMESYGAQC--VYVVDSA---------GALLPEDVRDRVRALRAA 185 (337)
T ss_pred EEEEec--cCCCHHHHHHHHHHHHhCCCCE--EEeCCCC---------CCCCHHHHHHHHHHHHHh
Confidence 344444 3468899999999999999886 4666664 899999999999998864
No 88
>TIGR03586 PseI pseudaminic acid synthase.
Probab=74.39 E-value=8.5 Score=33.09 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEe--eccC-------CCCC---CCC--------CCCCCCHHHHHHHHHHHHHcC
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEW--EDTL-------PYSL---GFD--------NTNPFRETEIFIILAAAESNG 77 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~--ed~~-------p~~~---~~~--------~~~~yT~~dir~iv~yA~~~g 77 (164)
+|-=+++..+++|+..+.-|++.+-+.. .+++ +|.. .+. .+-.++.++.++|.+||++.|
T Consensus 11 NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 11 NHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELG 90 (327)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhC
Confidence 5556899999999999999999765433 1211 1111 011 012467899999999999999
Q ss_pred CeEeeccCCcchHHHHhc
Q psy2349 78 LASIPLVPLYSDMDFVLK 95 (164)
Q Consensus 78 I~VIPeid~pGH~~~~l~ 95 (164)
|.++=++=-..+.+.+.+
T Consensus 91 i~~~stpfd~~svd~l~~ 108 (327)
T TIGR03586 91 LTIFSSPFDETAVDFLES 108 (327)
T ss_pred CcEEEccCCHHHHHHHHH
Confidence 999999999999887644
No 89
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=74.24 E-value=4.1 Score=35.86 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+..+|++|++.|.+.|.++||.||-
T Consensus 172 Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 172 GRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred CccccHHHHHHHHHHHHHcCCEEEe
Confidence 5699999999999999999999995
No 90
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=74.03 E-value=4.3 Score=29.44 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 62 RETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 62 T~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
|.+|++.++++|+++++.|.+-= -||.
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~g--~G~~ 35 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVRG--GGHS 35 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEES--SSTT
T ss_pred CHHHHHHHHHHHHHcCCcEEEEc--CCCC
Confidence 78999999999999999998853 4444
No 91
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=73.66 E-value=7.3 Score=33.99 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=48.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCCEEE--------------------------EEeeccCCCCCC-CCCCCCCCHH
Q psy2349 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLL--------------------------IEWEDTLPYSLG-FDNTNPFRET 64 (164)
Q Consensus 12 ~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~--------------------------l~~ed~~p~~~~-~~~~~~yT~~ 64 (164)
+|||--+.+..-.+|-+++..++.++.+.+. +.+.-.=|-... +.+..-|..+
T Consensus 163 aHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~ 242 (414)
T COG2100 163 AHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVK 242 (414)
T ss_pred EEecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHH
Confidence 5677666666666666666666666665442 222111111111 4555699999
Q ss_pred HHHHHHHHHHHcCCeEe-eccCCcchH
Q psy2349 65 EIFIILAAAESNGLASI-PLVPLYSDM 90 (164)
Q Consensus 65 dir~iv~yA~~~gI~VI-Peid~pGH~ 90 (164)
-+.++++|+.+-||.|+ --+=+||=-
T Consensus 243 kvle~aE~i~~a~idvlIaPv~lPG~N 269 (414)
T COG2100 243 KVLEVAEYIANAGIDVLIAPVWLPGVN 269 (414)
T ss_pred HHHHHHHHHHhCCCCEEEeeeecCCcC
Confidence 99999999999999875 233445543
No 92
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=73.45 E-value=30 Score=30.64 Aligned_cols=56 Identities=7% Similarity=-0.098 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
++++.+++.+.....-|.+.=-+.+. -|- -+-+..||++++++|++.|++++|-||
T Consensus 182 ~~~~~le~a~~~a~~~~~~vk~lll~--nP~---NPtG~~~s~e~l~~l~~~~~~~~i~lI 237 (447)
T PLN02607 182 VTPQALEAAYQEAEAANIRVRGVLIT--NPS---NPLGATVQRSVLEDILDFVVRKNIHLV 237 (447)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEe--CCC---CCcCcccCHHHHHHHHHHHHHCCCEEE
Confidence 68888888887765555543223332 121 123569999999999999999999887
No 93
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=73.45 E-value=12 Score=30.74 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCEEEEEee-------cc---CCCCCC--CC--------CCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 29 ILPILAYTGATSLLIEWE-------DT---LPYSLG--FD--------NTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~~e-------d~---~p~~~~--~~--------~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
+|+..+.-|++.+-+..- .. .+|... +. .+-.+|.++.++|.+||+++||..+-..-.+.
T Consensus 1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd~~ 80 (241)
T PF03102_consen 1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFDEE 80 (241)
T ss_dssp HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-SHH
T ss_pred CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCCHH
Confidence 688899999998765541 11 123222 11 12278999999999999999999988777766
Q ss_pred hHHHHh
Q psy2349 89 DMDFVL 94 (164)
Q Consensus 89 H~~~~l 94 (164)
=.+++.
T Consensus 81 s~d~l~ 86 (241)
T PF03102_consen 81 SVDFLE 86 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666653
No 94
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.94 E-value=4.8 Score=32.78 Aligned_cols=59 Identities=7% Similarity=-0.027 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCC--CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTN--PFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~--~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
++.+++.|+..+.+|...+.+.- ++......... ....+.+++|.++|+++||+|.-|-
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAG---YDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECC---ccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 45789999999999999887631 11110000000 1235678999999999999999886
No 95
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=72.62 E-value=15 Score=30.46 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcC
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~ 96 (164)
..++.+++++++++|.+.|++++=|+-+..-++.++..
T Consensus 133 ~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ 170 (247)
T PRK13957 133 RILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDC 170 (247)
T ss_pred hhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhC
Confidence 47899999999999999999999999999888877663
No 96
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=72.34 E-value=17 Score=31.67 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccC-------CCCCC-C--CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTL-------PYSLG-F--DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~-------p~~~~-~--~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
-++.-|.+-+|.+..+|++.++| .-.| .|... . ....+=|.+|.+++++-|.+|||.||-.+- .=|+
T Consensus 26 Gdl~Gi~~~LdYl~~LGv~aiwl--~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V-~NH~ 102 (505)
T COG0366 26 GDLKGITEKLDYLKELGVDAIWL--SPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLV-FNHT 102 (505)
T ss_pred ccHHhHHHhhhHHHHhCCCEEEe--CCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEec-cCcC
Confidence 45667789999999999999865 2111 11111 1 113455999999999999999999999874 4454
No 97
>KOG0259|consensus
Probab=72.30 E-value=4 Score=36.19 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
-++.||++-+++|.+.|+++||.||-. +..||+
T Consensus 212 cGnVys~~HL~kiae~A~klgi~vIaD-EVY~~~ 244 (447)
T KOG0259|consen 212 CGNVYSEDHLKKIAETAKKLGIMVIAD-EVYGHT 244 (447)
T ss_pred CcccccHHHHHHHHHHHHHhCCeEEeh-hhccee
Confidence 377999999999999999999999965 677887
No 98
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=71.83 E-value=13 Score=30.92 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
+++++..++..|++++.++ -+..+|..++.+.|+++||..|+-|---.
T Consensus 108 ~e~F~~~~~~aGvdgviip---------------DLP~ee~~~~~~~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIP---------------DLPYEESDYLISVCNLYNIELILLIAPTS 155 (263)
T ss_pred HHHHHHHHHHcCCeEEEec---------------CCCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 3455555555555555443 23458999999999999999999986433
No 99
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.55 E-value=12 Score=30.46 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
.-..++++.++..|++++.+|.. |++ +.++..+++++++++|+++++++..-.
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dl---p~e---------~~~~~~~~~~~~~~~Gl~~~~~v~p~T 140 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDL---LID---------YPDDLEKYVEIIKNKGLKPVFFTSPKF 140 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCC---CCC---------cHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 44677888888889988877532 121 236899999999999999999998744
No 100
>PLN02877 alpha-amylase/limit dextrinase
Probab=70.85 E-value=15 Score=36.07 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
..|+|++|+-+.++||+||-.+ ++-|+
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt 491 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHL 491 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCccc
Confidence 4689999999999999999876 56777
No 101
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.72 E-value=22 Score=29.19 Aligned_cols=60 Identities=25% Similarity=0.193 Sum_probs=46.1
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~V 80 (164)
-|.|+-+++ -+.+.+++++.+|+++++|-... |.. | ....++..+++++-+.+.++++.+
T Consensus 3 ~g~h~s~~g------~~~~a~~~~~~~G~~~~qif~~~--P~~--w-~~~~~~~~~~~~~~~~~~~~~~~~ 62 (274)
T TIGR00587 3 LGAHVSAAG------GLQAAYNRAAEIGATAFMFFLKS--PRW--W-RRPMLEEEVIDWFKAALETNKNLS 62 (274)
T ss_pred eEEEEeccC------CHHHHHHHHHHhCCCEEEEEecC--ccc--c-CCCCCCHHHHHHHHHHHHHcCCCC
Confidence 377887775 36789999999999999995543 111 2 245789999999999999999874
No 102
>PF12696 TraG-D_C: TraM recognition site of TraD and TraG
Probab=70.27 E-value=8.2 Score=27.89 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
..+...+.++++-++.+||.++--+|..+.+.....-.....+..+-...-.+-..+++|.+.+.+++.+.
T Consensus 12 ~~~~~~l~~~~~~~r~~gi~~~~~~Qs~~ql~~~yG~~~~~~i~~n~~~~~~~~~~d~~t~e~~s~~~G~~ 82 (128)
T PF12696_consen 12 LGPIPGLEDLLATGRSYGISFILAFQSLAQLEAKYGKEGAESILGNCNNKIFFGSNDPETAEYISKLLGET 82 (128)
T ss_pred cCCcHhHHHHHHHHhcCCCEEEEEEccHHHHHHHHCHHHHHHHHHhcCceEeccCCCHHHHHHHHHHhCCE
Confidence 33557899999999999999999999999997754311122222222222245567889999999999988
No 103
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=69.93 E-value=7.9 Score=34.13 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeEe---eccCCcchHH
Q psy2349 60 PFRETEIFIILAAAESNGLASI---PLVPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VI---Peid~pGH~~ 91 (164)
..|.+++.+.++.+++.|+.+| =-+-.||.+.
T Consensus 173 ~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~ 207 (430)
T PRK08208 173 PQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTH 207 (430)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCH
Confidence 4599999999999999998764 2356688773
No 104
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=69.89 E-value=5.1 Score=35.00 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+..||++++++|+++|+++||-||=
T Consensus 177 Gav~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 177 GAVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 5699999999999999999999874
No 105
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=69.83 E-value=27 Score=27.93 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=40.1
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy2349 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG 77 (164)
Q Consensus 12 ~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~g 77 (164)
...|+.|...+++++.++++.+...|++.+. +.|+ .|..|+++++++++..+++-
T Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~--l~Dt---------~G~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 134 SLEDAFGCKTDPEYVLEVAKALEEAGADEIS--LKDT---------VGLATPEEVAELVKALREAL 188 (265)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHcCCCEEE--echh---------cCCcCHHHHHHHHHHHHHhC
Confidence 3336666567888888888888888888654 4444 26788888888888887654
No 106
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=69.69 E-value=7.5 Score=31.38 Aligned_cols=59 Identities=8% Similarity=-0.006 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCC--CCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNT--NPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~--~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
.+.+++.|+....+|...+.+.+... | ...... -....+-++++.++|+++||++.=|-
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~-~--~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKT-P--AGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCC-C--CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 57789999999999999886643211 1 001000 12234567899999999999998873
No 107
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.23 E-value=31 Score=28.19 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
.+++++.++++.+...|+..+ .+-|++ |..+++++.++++..++.
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i--~l~DT~---------G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCV--YVTDSA---------GAMLPDDVRERVRALREA 182 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEE--EEcCCC---------CCcCHHHHHHHHHHHHHh
Confidence 577888888888888888854 566664 788999999999888764
No 108
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=68.73 E-value=20 Score=30.89 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
+.+++.|+..|+|.++|.+=.+ |+. ++..+.+++.++.+-|++.|+.|...+=
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~-P~~-----~g~~~~~~~~~~akrak~~Gm~vlldfH 79 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN-PYD-----GGYNDLEDVIALAKRAKAAGMKVLLDFH 79 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS--TT-----TTTTSHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred CCHHHHHHhcCCCeEEEEeccC-Ccc-----cccCCHHHHHHHHHHHHHCCCeEEEeec
Confidence 6789999999999999876321 444 4789999999999999999999996663
No 109
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=68.54 E-value=60 Score=26.70 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh
Q psy2349 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL 94 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l 94 (164)
.++.....|++.+.|--. .++.+++++++++|+++|++++=|+.+.--...++
T Consensus 125 qi~~a~~~GAD~VlLi~~-------------~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~ 177 (260)
T PRK00278 125 QIYEARAAGADAILLIVA-------------ALDDEQLKELLDYAHSLGLDVLVEVHDEEELERAL 177 (260)
T ss_pred HHHHHHHcCCCEEEEEec-------------cCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 466777777777655332 35678999999999999999998888776554444
No 110
>KOG0462|consensus
Probab=68.34 E-value=3.3 Score=38.34 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHcCCeEe----------------eccCCcchHHH
Q psy2349 61 FRETEIFIILAAAESNGLASI----------------PLVPLYSDMDF 92 (164)
Q Consensus 61 yT~~dir~iv~yA~~~gI~VI----------------Peid~pGH~~~ 92 (164)
--++|+-+=++--++|||+|- =.||||||.++
T Consensus 91 ~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 91 IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 356788888888899999874 57999999975
No 111
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=68.02 E-value=27 Score=28.03 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeec------------cCCCCCCCCCCCCCCHHHHH-----------------HHHHH
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWED------------TLPYSLGFDNTNPFRETEIF-----------------IILAA 72 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed------------~~p~~~~~~~~~~yT~~dir-----------------~iv~y 72 (164)
+.+...++.+.|..-|+..+-+-+.. .|| ...+..+..+|.+|++ +++++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~ 96 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKH 96 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 67888999999999999987666532 122 1113334566666654 67889
Q ss_pred HHHcCCeEeeccCCcchHHHHhcC
Q psy2349 73 AESNGLASIPLVPLYSDMDFVLKV 96 (164)
Q Consensus 73 A~~~gI~VIPeid~pGH~~~~l~~ 96 (164)
|+++||-++|=+=||+.....+.+
T Consensus 97 ~~~~~i~~iPG~~TptEi~~A~~~ 120 (204)
T TIGR01182 97 AQDHGIPIIPGVATPSEIMLALEL 120 (204)
T ss_pred HHHcCCcEECCCCCHHHHHHHHHC
Confidence 999999999999999999776653
No 112
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=67.98 E-value=17 Score=23.07 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 25 ~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
.+++++..++..|++.+-+-.-++ .....++.+++++.||.|||-++
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~--------------~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGN--------------LFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCc--------------ccCHHHHHHHHHHcCCeEEEEEE
Confidence 478899999999999876543332 11234666778889999999554
No 113
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=67.89 E-value=56 Score=31.62 Aligned_cols=109 Identities=11% Similarity=-0.026 Sum_probs=70.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcC
Q psy2349 17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (164)
Q Consensus 17 ~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~ 96 (164)
-++....+.+.+.|.+|..+++|.++-- .||.. + +..+.|.++||-||=|...=+|-.. ..
T Consensus 314 ~G~~~~~~~~~~dl~lmk~~n~N~vRts---HyP~~-----------~---~~ydLcDelGllV~~Ea~~~~~~~~--~~ 374 (808)
T COG3250 314 LGRVTDEDAMERDLKLMKEANMNSVRTS---HYPNS-----------E---EFYDLCDELGLLVIDEAMIETHGMP--DD 374 (808)
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEec---CCCCC-----------H---HHHHHHHHhCcEEEEecchhhcCCC--CC
Confidence 4666777779999999999999987542 23332 2 3557799999999999998888754 33
Q ss_pred ccchhh---------hcCC--CCCCcccCCChhh-HHHHHHHHHhc-ccCCCCCeeeccCCcc
Q psy2349 97 KEFAKM---------RQNF--NDTRFICPNARSS-LDLVFKMIGRM-RFVLGTPISPLFCPPS 146 (164)
Q Consensus 97 ~~~~~l---------~~~~--~~~~~l~p~~~~t-~~~~~~l~~E~-~lf~~s~~iHiGg~DE 146 (164)
+++.+. .... ++-=..|.+|+.. -.-...++.-+ ++=+ ++.+|.|| +.
T Consensus 375 ~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~g~~~~~~~~~~k~~d~-~r~~~~~~-~~ 435 (808)
T COG3250 375 PEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGHGSNHWALYRWFKASDP-TRPVQYEG-RG 435 (808)
T ss_pred cchhHHHHHHHHHHHHhccCCCcEEEEeccccccCccccHHHHHHHhhcCC-ccceeccC-cc
Confidence 444321 1111 2223456666622 12233455556 5555 89999999 66
No 114
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.62 E-value=8.3 Score=31.23 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
++.+++.|+..+.+|++.+.+.-.+.+ +.......-.-..+.+++|.++|+++||++.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVY-YEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccc-cccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 577899999999999999876311100 0000000001233578999999999999998876
No 115
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=67.44 E-value=15 Score=32.04 Aligned_cols=54 Identities=20% Similarity=0.138 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 25 ~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
-+.+.++.++.+|+.++-++..+.+|+.... .-...++++|-+..+++|+.|.-
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~----~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPP----QERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCCh----hHHHHHHHHHHHHHHHhCCeEEE
Confidence 4678999999999999988877777775421 11134578899999999999653
No 116
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=67.38 E-value=20 Score=28.88 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 25 ~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
-+.+.++.++.+|++++.+.... |.. . ...++..+++++-+.++++||+|+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~--~~~--~--~~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR--PHA--F--APDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC--ccc--c--ccccCchHHHHHHHHHHHcCCeEE
Confidence 38899999999999998763211 111 1 123567899999999999999975
No 117
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=67.12 E-value=25 Score=31.20 Aligned_cols=56 Identities=7% Similarity=0.150 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
++++.|++.|..-..-+.-.+.+....+ ...+..+|.+++++|.+.|+++||-||=
T Consensus 136 iD~e~Le~~I~~~~~~~~~~I~v~~p~N------~~gG~~~s~~~l~~i~eia~~~gi~li~ 191 (431)
T cd00617 136 IDVAKLEKLIDEVGAENIPYIVLTITNN------TAGGQPVSMANLREVRELAHKYGIPVVL 191 (431)
T ss_pred cCHHHHHHHhCcccCCCccEEEEECCcC------CCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 5677777776521000122233333322 2235799999999999999999998873
No 118
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=66.99 E-value=23 Score=29.27 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=42.5
Q ss_pred CCCCCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 4 PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 4 ~P~~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
.||-.-.-.++|-. +++.+++.++..++.+ +..+-+-|.. ...|..+-+++.++.|+++||.|.|
T Consensus 8 KPR~~GlT~v~Dkg---lg~~~~~dlLe~ag~y-ID~~K~g~Gt----------~~l~~~~~l~eki~l~~~~gV~v~~ 72 (244)
T PF02679_consen 8 KPRSRGLTMVIDKG---LGLRYLEDLLESAGDY-IDFLKFGWGT----------SALYPEEILKEKIDLAHSHGVYVYP 72 (244)
T ss_dssp SS-SSS-EEEEESS-----HHHHHHHHHHHGGG--SEEEE-TTG----------GGGSTCHHHHHHHHHHHCTT-EEEE
T ss_pred CCCCCCcEEEecCC---CCHHHHHHHHHHhhhh-ccEEEecCce----------eeecCHHHHHHHHHHHHHcCCeEeC
Confidence 46666667788877 8999999999988765 4444443322 2467778888888888888888864
No 119
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.95 E-value=16 Score=30.80 Aligned_cols=26 Identities=12% Similarity=-0.109 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2349 62 RETEIFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 62 T~~dir~iv~yA~~~gI~VIPeid~p 87 (164)
..+..|+++++|..+||.|=-|+=..
T Consensus 113 Ni~~T~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 113 NIAFTKEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 34578999999999999986776544
No 120
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=66.88 E-value=22 Score=29.31 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCEEEEEeeccCCCCCC--------CCCC--------CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2349 29 ILPILAYTGATSLLIEWEDTLPYSLG--------FDNT--------NPFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~~ed~~p~~~~--------~~~~--------~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~ 92 (164)
..+.++..|+..+.|..|++ |+... .... ..=+...|+.+++.. ..|| ++|-|++.-.+..
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg-~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~G-a~gi-ivP~v~tae~a~~ 108 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHA-PNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIG-FYNF-LIPFVETAEEARR 108 (256)
T ss_pred HHHHHHhcCCCEEEEccccC-CCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhCCC-CCee-eecCcCCHHHHHH
Confidence 45567777777777777763 22111 0000 011334444444322 3344 6777777777776
Q ss_pred Hhc
Q psy2349 93 VLK 95 (164)
Q Consensus 93 ~l~ 95 (164)
+.+
T Consensus 109 ~v~ 111 (256)
T PRK10558 109 AVA 111 (256)
T ss_pred HHH
Confidence 654
No 121
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=65.94 E-value=27 Score=28.50 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
.+++++.+++..+...|++.+ .+-|+. |..+++++++++...+++- . + .|..=+|-
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i--~l~DT~---------G~~~P~~v~~lv~~l~~~~-~-~-~l~~H~Hn 191 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRL--RFADTV---------GILDPFTTYELIRRLRAAT-D-L-PLEFHAHN 191 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEE--EeCCCC---------CCCCHHHHHHHHHHHHHhc-C-C-eEEEEecC
Confidence 568889999999888888864 556654 7899999999999887652 2 2 25665564
No 122
>TIGR03356 BGL beta-galactosidase.
Probab=65.73 E-value=24 Score=31.24 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCCEEE--EEeeccCCCCCCCCCCCCCCH---HHHHHHHHHHHHcCCeEeecc---CCcchH
Q psy2349 24 TYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRE---TEIFIILAAAESNGLASIPLV---PLYSDM 90 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~--l~~ed~~p~~~~~~~~~~yT~---~dir~iv~yA~~~gI~VIPei---d~pGH~ 90 (164)
...++-|++|+.+|+|.++ |.|+.-+|-. .+.+.+ +-.+++++.++++||++|.-+ |+|-+.
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g-----~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l 123 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEG-----TGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQAL 123 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCC-----CCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHH
Confidence 4578999999999999887 4555555541 123443 567799999999999999875 666553
No 123
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.59 E-value=19 Score=29.01 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCC----------CCCC-CCCCCCCCHHHHH-----------------HHHHH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLP----------YSLG-FDNTNPFRETEIF-----------------IILAA 72 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p----------~~~~-~~~~~~yT~~dir-----------------~iv~y 72 (164)
.+.+...++.+.+...|++.+-+-+..... |..- +..+..+|.+|++ +++++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~~ 103 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLKA 103 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 567888999999999999977555432111 1111 2334455555543 78899
Q ss_pred HHHcCCeEeeccCCcchHHHHhc
Q psy2349 73 AESNGLASIPLVPLYSDMDFVLK 95 (164)
Q Consensus 73 A~~~gI~VIPeid~pGH~~~~l~ 95 (164)
|++++|.+||-+-||.-...+++
T Consensus 104 a~~~~i~~iPG~~TptEi~~a~~ 126 (212)
T PRK05718 104 AQEGPIPLIPGVSTPSELMLGME 126 (212)
T ss_pred HHHcCCCEeCCCCCHHHHHHHHH
Confidence 99999999999999987655443
No 124
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=65.56 E-value=37 Score=29.19 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEe--eccC--------CCCCC--C--------CCCCCCCHHHHHHHHHHHHHcC
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEW--EDTL--------PYSLG--F--------DNTNPFRETEIFIILAAAESNG 77 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~--ed~~--------p~~~~--~--------~~~~~yT~~dir~iv~yA~~~g 77 (164)
+|-=+++.-|++|+..+.-|++.+-+.. .+++ +|... + -..-.++.++.++|.+||++.|
T Consensus 10 NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 10 NHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKG 89 (329)
T ss_pred CccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 5666899999999999999999875543 1111 12111 1 1123678999999999999999
Q ss_pred CeEeeccCCcchHHHHhc
Q psy2349 78 LASIPLVPLYSDMDFVLK 95 (164)
Q Consensus 78 I~VIPeid~pGH~~~~l~ 95 (164)
|.++=++=-..+.+.+.+
T Consensus 90 i~~~stpfd~~svd~l~~ 107 (329)
T TIGR03569 90 IEFLSTPFDLESADFLED 107 (329)
T ss_pred CcEEEEeCCHHHHHHHHh
Confidence 999999988888887754
No 125
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=65.40 E-value=24 Score=30.29 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
+..+++++.++++.+..+|++.+ ++.|+. |.++++|+++++...++.
T Consensus 138 ~~~~~e~l~~~a~~~~~~Ga~~i--~i~DT~---------G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 138 HMTPPEKLAEQAKLMESYGADCV--YIVDSA---------GAMLPDDVRDRVRALKAV 184 (333)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEE--EEccCC---------CCCCHHHHHHHHHHHHHh
Confidence 34678899999999999998864 666664 899999999999998864
No 126
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=65.33 E-value=24 Score=28.60 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCC---------C--CCCCCCCCHHHHH-----------------HHHHH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSL---------G--FDNTNPFRETEIF-----------------IILAA 72 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~---------~--~~~~~~yT~~dir-----------------~iv~y 72 (164)
.+++.-..+.+.+..-|+..+-+.+.-..+++. + +..+..++.+|++ +++++
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~~ 101 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAKA 101 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 467778889999999999988766643222111 1 4567788888886 57889
Q ss_pred HHHcCCeEeeccCCcchHHHHhc
Q psy2349 73 AESNGLASIPLVPLYSDMDFVLK 95 (164)
Q Consensus 73 A~~~gI~VIPeid~pGH~~~~l~ 95 (164)
|..+||-++|=+-||.-....+.
T Consensus 102 a~~~~ip~~PG~~TptEi~~Ale 124 (211)
T COG0800 102 ANRYGIPYIPGVATPTEIMAALE 124 (211)
T ss_pred HHhCCCcccCCCCCHHHHHHHHH
Confidence 99999999999999998876654
No 127
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=65.29 E-value=22 Score=33.75 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHH------Hh--c--Ccc-c------hhhhcCCCCCCcccCCChhhHHHHHH
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDMDF------VL--K--VKE-F------AKMRQNFNDTRFICPNARSSLDLVFK 125 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~~~------~l--~--~~~-~------~~l~~~~~~~~~l~p~~~~t~~~~~~ 125 (164)
..|+|.+|+-.-+.||+||-.| ++=|+.. .+ + .|. | ..+.....+.++++-.+|-+.++|-+
T Consensus 264 i~EfK~mV~~lHkaGI~VILDV-VfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivD 342 (697)
T COG1523 264 IKEFKDMVKALHKAGIEVILDV-VFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVD 342 (697)
T ss_pred HHHHHHHHHHHHHcCCEEEEEE-eccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHH
Confidence 4599999999999999999887 5677732 11 1 011 1 11122223456999999999999888
Q ss_pred HHHhc
Q psy2349 126 MIGRM 130 (164)
Q Consensus 126 l~~E~ 130 (164)
-|+=.
T Consensus 343 sLrYW 347 (697)
T COG1523 343 SLRYW 347 (697)
T ss_pred HHHHH
Confidence 65543
No 128
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=65.17 E-value=20 Score=34.97 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 64 TEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
.|+|++|+-|.++||+||=.+ ++-|+.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~ 430 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTN 430 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-eccccc
Confidence 699999999999999999776 455654
No 129
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=65.06 E-value=23 Score=29.39 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=41.6
Q ss_pred HHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcC
Q psy2349 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~ 96 (164)
+|.....+|++.+.|-. ..++.+++++++++|.+.|++++=||-+.-.++.++..
T Consensus 123 QI~eA~~~GADaVLLI~-------------~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~ 177 (254)
T PF00218_consen 123 QIYEARAAGADAVLLIA-------------AILSDDQLEELLELAHSLGLEALVEVHNEEELERALEA 177 (254)
T ss_dssp HHHHHHHTT-SEEEEEG-------------GGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHcCCCEeehhH-------------HhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHc
Confidence 34445556666654422 48899999999999999999999999999999887753
No 130
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=64.91 E-value=9.2 Score=31.84 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK 95 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~ 95 (164)
.++.+++++++++|.++|++++=|+..--++.-+++
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~ 174 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALK 174 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHh
Confidence 889999999999999999999999999888887776
No 131
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=64.88 E-value=6.4 Score=34.11 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.++.+|.+|++.|.+.|+++||-+|
T Consensus 192 TGNVlTdeE~~kldalA~~~giPli 216 (417)
T COG3977 192 TGNVLTDEELAKLDALARQHGIPLI 216 (417)
T ss_pred CCCcccHHHHHHHHHHhhhcCCcEE
Confidence 3679999999999999999999887
No 132
>PRK12677 xylose isomerase; Provisional
Probab=64.84 E-value=20 Score=31.34 Aligned_cols=52 Identities=23% Similarity=0.222 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+.+.++.++.+|+.++-++.++.+||... ..-....+++|.+.++++||.|.
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~----~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGAT----DAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCC----hhhhHHHHHHHHHHHHHcCCeeE
Confidence 77999999999999999988887777542 11123468899999999999955
No 133
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=64.42 E-value=18 Score=30.09 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+....++.|++.++....-+...-.+.+.. |. -+.+..+|.+++++|++.|+++|+-||-
T Consensus 127 ~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~--p~---nPtG~~~~~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 127 DFHLDPEALEEALDELPSKGPRPKAVLICN--PN---NPTGSVLSLEELRELAELAREYNIIIIV 186 (363)
T ss_dssp TTEETHHHHHHHHHTSHTTTETEEEEEEES--SB---TTTTBB--HHHHHHHHHHHHHTTSEEEE
T ss_pred cccccccccccccccccccccccceeeecc--cc---cccccccccccccchhhhhcccccceee
Confidence 445677777777766555543111222322 22 1235689999999999999999999883
No 134
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=64.29 E-value=20 Score=33.89 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCCEEEEE---ee-------ccCCCC-CC--CCC----CCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 27 KEILPILAYTGATSLLIE---WE-------DTLPYS-LG--FDN----TNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~---~e-------d~~p~~-~~--~~~----~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
..+-+.|+.+|++.+++- -+ .+ |.. +. +++ ..+=|.+|++++++-|.++||.||=.+ .|.|
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~t-P~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl-VpnH 154 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFT-PSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI-IPAH 154 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCC-CCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe-CCCC
Confidence 567788999999998752 11 00 211 11 211 234499999999999999999999655 4677
Q ss_pred HH
Q psy2349 90 MD 91 (164)
Q Consensus 90 ~~ 91 (164)
++
T Consensus 155 Ts 156 (688)
T TIGR02455 155 TG 156 (688)
T ss_pred CC
Confidence 74
No 135
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=64.27 E-value=26 Score=28.44 Aligned_cols=24 Identities=33% Similarity=0.182 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
.+++.++++.++++|+..|+-+.-
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P 138 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAP 138 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCC
Confidence 479999999999999999997763
No 136
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=64.13 E-value=22 Score=31.04 Aligned_cols=56 Identities=13% Similarity=-0.028 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
.+--+..|+.|+.+|+..+.--+-. .......-.+=+++|+++|++.|++||-.|+
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~~-------~~~~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLLI-------PEEDAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred chhHHHHHHHHHHcCccceeeeccc-------CCchHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 3556889999999999987421110 0011122345578999999999999997775
No 137
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=64.10 E-value=61 Score=26.94 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcC
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~ 96 (164)
-+.+.+.+.-..|+..|+..+..+..+ |-++..+-.| +-.+.++.+-+|+++.||.++=|+--+-+.+.+...
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~k--pRTs~~s~~G-~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~ 110 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFK--PRTSPYSFQG-LGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY 110 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeec--CCCCCCccCC-cHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh
Confidence 367788888889999999988887776 4443211111 228999999999999999999999999999887543
No 138
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=64.01 E-value=26 Score=28.41 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 25 ~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+.+.++.++..|+.++.|...+... ......++.+++++|-+.++++||+|.
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDE----RLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCcccc----chhccCCCHHHHHHHHHHHHHcCCcee
Confidence 37889999999999998875433111 111235789999999999999999985
No 139
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=63.97 E-value=70 Score=27.60 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCC---HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCcc
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFR---ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKE 98 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT---~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~ 98 (164)
..+.+++.-+++|..|+|++.|---..-+ ..+| .++++.|..-.+.+||+|--.++--+=..
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVNa~~--------~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~------- 119 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVNANP--------KLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIE------- 119 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS--C--------GGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHH-------
T ss_pred chhHHHHHHHHHhhcCCceEEecccccCh--------hhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcc-------
Confidence 34678888999999999998763211111 2222 46888999999999999988876543322
Q ss_pred chhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCC
Q psy2349 99 FAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLG 135 (164)
Q Consensus 99 ~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~ 135 (164)
+.. -.+.||.+|++.++-++-.+|+ +..|.
T Consensus 120 ---lgg----L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 120 ---LGG----LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp ---TTS-----S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred ---cCC----cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 111 1478999999999999999999 99983
No 140
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=63.96 E-value=21 Score=29.54 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+..++.+.++++++.++.+|+..+.+ .. +.++-..++.+++++++++|+.-+ .|.|-|.
T Consensus 37 ~~~ls~eei~~~i~~~~~~gi~~I~~--tG----------GEPll~~~l~~iv~~l~~~g~~~v-~i~TNG~ 95 (302)
T TIGR02668 37 GNELSPEEIERIVRVASEFGVRKVKI--TG----------GEPLLRKDLIEIIRRIKDYGIKDV-SMTTNGI 95 (302)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEEE--EC----------cccccccCHHHHHHHHHhCCCceE-EEEcCch
Confidence 46789999999999999999887654 21 234444567777777777776222 3455554
No 141
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=63.60 E-value=89 Score=26.27 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=78.1
Q ss_pred EEEeC-CCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC-CCCC---CCCCHHHHHHHHHHHHHc----CCeEee
Q psy2349 12 VHLDL-KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNT---NPFRETEIFIILAAAESN----GLASIP 82 (164)
Q Consensus 12 ~~lD~-~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~-~~~~---~~yT~~dir~iv~yA~~~----gI~VIP 82 (164)
|..|. .+ -++..+.+.++.+...|+-+++||.. .+|-.+. ..++ ..+|.+|..+.++.|++. .+-||-
T Consensus 81 v~~D~d~G--g~~~~v~r~V~~l~~aGvaGi~iEDq-~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiA 157 (285)
T TIGR02320 81 IILDGDTG--GNFEHFRRLVRKLERRGVSAVCIEDK-LGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIA 157 (285)
T ss_pred EEEecCCC--CCHHHHHHHHHHHHHcCCeEEEEecc-CCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 67888 45 58899999999999999999877764 3565443 3333 467999999999988764 367778
Q ss_pred ccCCcch---H-HHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeee
Q psy2349 83 LVPLYSD---M-DFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISP 140 (164)
Q Consensus 83 eid~pGH---~-~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iH 140 (164)
-.|+... . +++-+...|.+.... ..+-+.-..+.+-+..+.+++ ..||+.+.+-
T Consensus 158 RTDa~~~~~~~~eAi~Ra~ay~eAGAD----~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 158 RVESLILGKGMEDALKRAEAYAEAGAD----GIMIHSRKKDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred ecccccccCCHHHHHHHHHHHHHcCCC----EEEecCCCCCHHHHHHHHHHhhhhCCCCCEEE
Confidence 8776521 2 233233334332221 122232234556677788888 7787445543
No 142
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=63.55 E-value=77 Score=26.43 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH--c-CCeEeeccCCcchHHH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES--N-GLASIPLVPLYSDMDF 92 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~--~-gI~VIPeid~pGH~~~ 92 (164)
...+.++++++.+...|++++.+-= . ......+|.+|-+++++.+.+ . .+.||.-+-..+..+.
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~G-----s---tGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~a 84 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGG-----T---SGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDET 84 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc-----c---CcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHH
Confidence 6678899999999999999874310 1 122336777777777765543 2 2666666655555444
No 143
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=63.46 E-value=24 Score=31.44 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
+..||.+++++|.+.|+++||-||=.-
T Consensus 192 G~v~s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 192 GQPVSMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 368999999999999999999998653
No 144
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=63.45 E-value=16 Score=30.89 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 60 PFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
..|.+|+.+.++.++++||.|.-.
T Consensus 151 g~t~~~~~~ai~~~~~~Gi~v~~~ 174 (313)
T TIGR01210 151 GSTFEDFIRAAELARKYGAGVKAY 174 (313)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 459999999999999999997644
No 145
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=63.40 E-value=26 Score=28.82 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 61 FRETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 61 yT~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
+..+|..++++.++++|+..|+-+.-
T Consensus 124 lp~ee~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 124 LPLEESGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred CChHHHHHHHHHHHHCCCcEEEEECC
Confidence 34588999999999999999987754
No 146
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=63.24 E-value=61 Score=26.38 Aligned_cols=77 Identities=17% Similarity=0.070 Sum_probs=57.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHc-----CCeEeeccC
Q psy2349 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESN-----GLASIPLVP 85 (164)
Q Consensus 12 ~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~-~~~~~~yT~~dir~iv~yA~~~-----gI~VIPeid 85 (164)
+..|..-.+-+.+.+.+.++.+...|+.++++|... +|-... ...+..+|.+|..+.++.|++- .+-||--.|
T Consensus 72 v~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~-~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTD 150 (243)
T cd00377 72 VIADADTGYGNALNVARTVRELEEAGAAGIHIEDQV-GPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTD 150 (243)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCC-CCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcC
Confidence 677886556688889999999999999998777653 444332 4556688999988888777652 688888888
Q ss_pred Ccch
Q psy2349 86 LYSD 89 (164)
Q Consensus 86 ~pGH 89 (164)
+.+.
T Consensus 151 a~~~ 154 (243)
T cd00377 151 ALLA 154 (243)
T ss_pred chhc
Confidence 7654
No 147
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=63.07 E-value=23 Score=29.74 Aligned_cols=56 Identities=21% Similarity=0.080 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccCCCCCCC-CCCC--CCCHHHHHHHHHHHHHcCCeEe
Q psy2349 25 YLKEILPILAYTGATSLLIEWEDTLPYSLGF-DNTN--PFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 25 ~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~-~~~~--~yT~~dir~iv~yA~~~gI~VI 81 (164)
.|+++|...+..++..+++- ++.+|+.+.- .... ..=++++++|=++|+++||++-
T Consensus 46 ~l~~~L~~n~~~~I~~yRis-S~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRls 104 (275)
T PF03851_consen 46 DLLRILEYNIAHGIRFYRIS-SDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRLS 104 (275)
T ss_dssp HHHHHHHHHHHTT--EEE---TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHcCCCEEecC-cccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeEE
Confidence 34444555555665555554 5678887761 1111 1345788999999999999984
No 148
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=62.71 E-value=46 Score=29.64 Aligned_cols=71 Identities=6% Similarity=0.095 Sum_probs=52.3
Q ss_pred ceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 9 ~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
.-|.|+-+++. |.+-+.....+|+|++|+-...- .. |. ...++.++++++.+.++++||.+.|- ..
T Consensus 132 ~iGaHvSiaGG------~~~a~~~a~~~g~~afqiF~~np--r~--w~-~~~~~~~~~~~f~~~~~~~gi~~~~i---~~ 197 (413)
T PTZ00372 132 YIGAHVSASGG------VDNSPINAYNIAGQAFALFLKNQ--RT--WN-SPPLSDETIDKFKENCKKYNYDPKFI---LP 197 (413)
T ss_pred eEEEEEecccc------HHHHHHHHHHcCCCEEEEEcCCC--cc--CC-CCCCCHHHHHHHHHHHHHcCCCcceE---Ee
Confidence 34888888763 66688889999999999866531 11 22 35799999999999999999975442 23
Q ss_pred hHHHH
Q psy2349 89 DMDFV 93 (164)
Q Consensus 89 H~~~~ 93 (164)
|+.++
T Consensus 198 HapYl 202 (413)
T PTZ00372 198 HGSYL 202 (413)
T ss_pred ecCce
Confidence 77654
No 149
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=62.16 E-value=64 Score=25.51 Aligned_cols=69 Identities=14% Similarity=-0.018 Sum_probs=45.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCC-----------------CC-------------------
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS-----------------LG------------------- 54 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~-----------------~~------------------- 54 (164)
.+++|.- .-++++...++++.|+.+++.- +|+-+|.. .+
T Consensus 96 ~l~lDaN-~~~~~~~a~~~~~~l~~~~i~~----iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d 170 (229)
T cd00308 96 RLAVDAN-GAWTPKEAIRLIRALEKYGLAW----IEEPCAPDDLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVD 170 (229)
T ss_pred eEEEECC-CCCCHHHHHHHHHHhhhcCCCe----EECCCCccCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCC
Confidence 5899985 4468899999999999866542 23322211 00
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 55 ---FDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 55 ---~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
+.-...-...+.+++.++|+++||.++|--
T Consensus 171 ~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~ 203 (229)
T cd00308 171 ILQIKPTRVGGLTESRRAADLAEAFGIRVMVHG 203 (229)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCEEeecC
Confidence 000112246788889999999999998863
No 150
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=61.73 E-value=9 Score=25.69 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchh
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAK 101 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~ 101 (164)
+.-+...=++..++||+++|..|+|.=.- =..++-++|+|..
T Consensus 36 GqGia~~L~~~~l~~a~~~~~kv~p~C~y--~~~~~~~hpey~d 77 (78)
T PF14542_consen 36 GQGIAKKLVEAALDYARENGLKVVPTCSY--VAKYFRRHPEYQD 77 (78)
T ss_dssp TTTHHHHHHHHHHHHHHHTT-EEEETSHH--HHHHHHH-GGGTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCEEEEECHH--HHHHHHhCccccc
Confidence 34677888999999999999999996322 1234556787764
No 151
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.32 E-value=26 Score=28.05 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCC----------CCCC-CCCCCCCCHHHHH-----------------HHHHH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLP----------YSLG-FDNTNPFRETEIF-----------------IILAA 72 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p----------~~~~-~~~~~~yT~~dir-----------------~iv~y 72 (164)
.+.+...++.+.|..-|+..+-+-+..--. |..- +..+..+|.+|++ +|+++
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~ 92 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAA 92 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 367888999999999999987666542111 1111 3445577777765 67889
Q ss_pred HHHcCCeEeeccCCcchHHHHhc
Q psy2349 73 AESNGLASIPLVPLYSDMDFVLK 95 (164)
Q Consensus 73 A~~~gI~VIPeid~pGH~~~~l~ 95 (164)
|+++||-+||=+=||.-....+.
T Consensus 93 a~~~~i~~iPG~~TptEi~~A~~ 115 (201)
T PRK06015 93 ANDSDVPLLPGAATPSEVMALRE 115 (201)
T ss_pred HHHcCCCEeCCCCCHHHHHHHHH
Confidence 99999999999999998876654
No 152
>KOG0464|consensus
Probab=61.25 E-value=5.2 Score=36.16 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCeE-------------eeccCCcchHHHH
Q psy2349 64 TEIFIILAAAESNGLAS-------------IPLVPLYSDMDFV 93 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~V-------------IPeid~pGH~~~~ 93 (164)
+-+.+..+--++|||+| |-.||||||.++-
T Consensus 74 dtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 74 DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred chHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 34566778889999998 6789999999753
No 153
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=61.24 E-value=42 Score=27.24 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCCEEEEEee
Q psy2349 26 LKEILPILAYTGATSLLIEWE 46 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~e 46 (164)
+.+.++.++.+|++.+.+.+.
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~ 32 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLG 32 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcC
Confidence 556666666666666655543
No 154
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=61.07 E-value=20 Score=32.30 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec---cCCcchH
Q psy2349 24 TYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL---VPLYSDM 90 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~--l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPe---id~pGH~ 90 (164)
...++=|++|+.+|+|.++ |.|+--+|-... ...+.--.+=.+++++.++++||+++-- .|+|...
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~-~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l 141 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDE-LTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHL 141 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHH
Confidence 3468899999999999876 566666663211 0012223445689999999999998554 4778765
No 155
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=61.03 E-value=39 Score=32.42 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=73.8
Q ss_pred CCCCCCCceeEEEeCCCCCCC--HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC--
Q psy2349 2 VTPSTFKEVLVHLDLKGAPPS--LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG-- 77 (164)
Q Consensus 2 ~D~P~~~~Rg~~lD~~r~~~~--~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~g-- 77 (164)
++.|..-|||+=+.+.+.++. ...|+.+.+.++..|++.++| .+|+ .=|.+|++++++.++..|
T Consensus 590 E~NP~LG~RGir~~l~~~~~~lf~~qlraI~ral~d~G~~~~~I----m~Pm--------V~s~eE~~~~~~~~~~~g~~ 657 (782)
T TIGR01418 590 EENPMLGWRGASRYYSESYEEAFRLECRAIKRVREEMGLTNVEV----MIPF--------VRTPEEGKRALEIMAEEGLR 657 (782)
T ss_pred CCCcccccchhhhhcccccHHHHHHHHHHHHHHHHhcCCCCeEE----EecC--------CCCHHHHHHHHHHHHHhCcc
Confidence 356888899988777652221 123444444444568877655 3444 347899999999887754
Q ss_pred -----CeEeeccCCcchHHH---HhcCcc--------chhh-----hcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 78 -----LASIPLVPLYSDMDF---VLKVKE--------FAKM-----RQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 78 -----I~VIPeid~pGH~~~---~l~~~~--------~~~l-----~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
+.|+.-|++|.=+.. +++.=+ +.++ |++..-....++.+|+..+.++.+++..
T Consensus 658 ~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a 731 (782)
T TIGR01418 658 RGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAA 731 (782)
T ss_pred ccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHH
Confidence 568888899876643 333211 1110 1111112467888999999999999988
No 156
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=60.86 E-value=32 Score=27.96 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
..+.+.++.++.+|++.+-|-+.+. .. ......+|.++++++.+..+++||.|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDET---DD-RLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCc---cc-hhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 3477889999999999987744321 10 111235689999999999999999986
No 157
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=60.59 E-value=53 Score=27.70 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCC--CEEEEEeeccCCCC-CC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh
Q psy2349 20 PPSLTYLKEILPILAYTGA--TSLLIEWEDTLPYS-LG--FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL 94 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~--N~l~l~~ed~~p~~-~~--~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l 94 (164)
..+-+.++++++.+...++ ..+.|.+...-.+. +. +. +..+ -+.+++++..+++||+|++-|+ |+=. .
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d-~~~F--Pdp~~mi~~L~~~G~kv~~~i~-P~v~---~ 92 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFD-PERF--PDPKAMVRELHEMNAELMISIW-PTFG---P 92 (319)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEC-hhhC--CCHHHHHHHHHHCCCEEEEEec-CCcC---C
Confidence 3588899999999999987 45555432111111 01 11 2222 2678999999999999998665 3310 0
Q ss_pred cCccchhhhc----------------CCCCCCcccCCChhhHHHHHHHHHh
Q psy2349 95 KVKEFAKMRQ----------------NFNDTRFICPNARSSLDLVFKMIGR 129 (164)
Q Consensus 95 ~~~~~~~l~~----------------~~~~~~~l~p~~~~t~~~~~~l~~E 129 (164)
..+.|....+ .+.....+|.+||++.+...+.+++
T Consensus 93 ~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 93 ETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred CChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 1111221111 1112468999999999976555443
No 158
>PRK15452 putative protease; Provisional
Probab=60.59 E-value=18 Score=32.45 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=58.0
Q ss_pred HHhcCCCEEEEEeeccCCCCCCCCC-CCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccc-h----------
Q psy2349 33 LAYTGATSLLIEWEDTLPYSLGFDN-TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEF-A---------- 100 (164)
Q Consensus 33 la~~k~N~l~l~~ed~~p~~~~~~~-~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~-~---------- 100 (164)
+-..|++.+.+-.+. |. ++. ..-+|.+|+++.+++|+++|++|.--+++.-|-+.+-...++ .
T Consensus 19 Ai~~GADaVY~G~~~---~~--~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgv 93 (443)
T PRK15452 19 AFAYGADAVYAGQPR---YS--LRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDAL 93 (443)
T ss_pred HHHCCCCEEEECCCc---cc--hhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEE
Confidence 336799988664432 22 221 356799999999999999999998887777776432111100 0
Q ss_pred --------h-hhcCC-----CCCCcccCCChhhHHHHHHH
Q psy2349 101 --------K-MRQNF-----NDTRFICPNARSSLDLVFKM 126 (164)
Q Consensus 101 --------~-l~~~~-----~~~~~l~p~~~~t~~~~~~l 126 (164)
. +++.. +...++|..|..+.+|+.++
T Consensus 94 IV~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~l 133 (443)
T PRK15452 94 IMSDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQM 133 (443)
T ss_pred EEcCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHC
Confidence 0 11111 12358999999999999997
No 159
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.53 E-value=17 Score=31.07 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCC---CCHHHHHHHHHHHHHcCCeEe
Q psy2349 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNP---FRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~---yT~~dir~iv~yA~~~gI~VI 81 (164)
|.++|+....+++-.++|- ++.|||.+.-..+.. .-++++++|=++|+++||++-
T Consensus 54 l~~~L~~n~~~~I~f~Ris-S~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRLS 111 (312)
T TIGR00629 54 TMKTLHWNIGHGIPFYRFS-SSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLT 111 (312)
T ss_pred HHHHHHHHHHcCCcEEecC-ccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEEE
Confidence 3344444444555544443 567899876110111 234689999999999999874
No 160
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=60.42 E-value=14 Score=32.73 Aligned_cols=32 Identities=6% Similarity=-0.097 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeecc--CCcchHH
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLV--PLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPei--d~pGH~~ 91 (164)
..|.+++.+.++.+++.||.|.-.+ -.||.+.
T Consensus 319 ~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~ 352 (472)
T TIGR03471 319 GLTVEIARRFTRDCHKLGIKVHGTFILGLPGETR 352 (472)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCH
Confidence 4689999999999999999987665 5677764
No 161
>COG3505 VirD4 Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]
Probab=60.18 E-value=13 Score=34.56 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeec
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPL 141 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHi 141 (164)
-+++.+.++..+.+||+.++=+|..|-++..-....-...-.+-...-.+.+.+.+|.+++.+++.+. .... ++-.-.
T Consensus 421 L~~l~~al~~~r~yG~~~~li~Qsl~QLe~~YG~~~a~til~nc~~~~~f~~nd~~tA~~iS~~lG~~Tv~~~-~~s~s~ 499 (596)
T COG3505 421 LPDLEEALAEMRGYGIRLILIFQSLAQLEKIYGREGANTILDNCAVRIFFAPNDDETARYVSKLLGDETVKVK-SRSRSS 499 (596)
T ss_pred hHHHHHHHHHhhccCceEEEEeccHHHHHHHhhhhHHHHHhhhcceEEEecCCchHHHHHHHHHhCceeEEee-eecccc
Confidence 36889999999999999999999999998643211111111111223468899999999999999999 7766 333333
Q ss_pred cC
Q psy2349 142 FC 143 (164)
Q Consensus 142 Gg 143 (164)
|.
T Consensus 500 g~ 501 (596)
T COG3505 500 GS 501 (596)
T ss_pred cc
Confidence 44
No 162
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=59.78 E-value=98 Score=25.48 Aligned_cols=56 Identities=7% Similarity=0.073 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeecc
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLV 84 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~---gI~VIPei 84 (164)
...+.++++++.+...|++++.+-= - ......+|.+|-+++++.+.+. .+.||.-+
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~G-----s---tGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv 74 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVG-----T---TGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT 74 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc-----c---CcccccCCHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 6678899999999999999985410 0 1112355555555555554432 24455444
No 163
>KOG4175|consensus
Probab=59.47 E-value=31 Score=28.25 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 61 FRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 61 yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
+-.+|...+-++|+++||.+||.+ +|.-.
T Consensus 132 lPpEEa~~~Rne~~k~gislvpLv-aPsTt 160 (268)
T KOG4175|consen 132 LPPEEAETLRNEARKHGISLVPLV-APSTT 160 (268)
T ss_pred CChHHHHHHHHHHHhcCceEEEee-CCCCh
Confidence 467888888899999999999987 34433
No 164
>PRK12928 lipoyl synthase; Provisional
Probab=59.07 E-value=49 Score=27.80 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCC----CCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSL----GFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~----~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
--|.+.+.+.++.|..++++.+++ |+|.. ++.-..++|+++..++-++|.+.|..-|
T Consensus 215 GET~ed~~etl~~Lrel~~d~v~i-----~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~ 275 (290)
T PRK12928 215 GETEDEVIETLRDLRAVGCDRLTI-----GQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHV 275 (290)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEE-----EcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCcee
Confidence 467777777888888888776654 33322 2444568899999999999988887544
No 165
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=58.93 E-value=9.9 Score=33.26 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCCeEeec
Q psy2349 61 FRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 61 yT~~dir~iv~yA~~~gI~VIPe 83 (164)
=|.+|+.+++++|++++|.|+|-
T Consensus 5 ~s~eev~~iv~~a~~~~i~v~~~ 27 (413)
T TIGR00387 5 KNTEQVARILKLCHEHRIPIVPR 27 (413)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE
Confidence 37899999999999999999993
No 166
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=58.60 E-value=41 Score=26.77 Aligned_cols=63 Identities=13% Similarity=-0.029 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCC--CCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNP--FRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~--yT~~dir~iv~yA~~~gI~VIPei 84 (164)
.++.+++.++.++.+|+..+.++..-...-....+.... --.+.++++.++|+++||.+--|-
T Consensus 82 ~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~ 146 (274)
T COG1082 82 ALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLALEN 146 (274)
T ss_pred HHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEee
Confidence 367788899999999998877655321100000001112 257789999999999999998886
No 167
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=58.32 E-value=11 Score=32.79 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
.-|.+|+.+++++|.++||.|+|-=
T Consensus 38 p~s~~eV~~iv~~a~~~~~~v~prG 62 (459)
T COG0277 38 PKSEEEVAAILRLANENGIPVVPRG 62 (459)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 5589999999999999999999853
No 168
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=58.10 E-value=34 Score=30.47 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=53.8
Q ss_pred CceeEEEeCCCCC---C---CHHHHHHHHHHHH-hcCCCEE-EEEeeccC-CCCCC-----CCCCCCCCHHHHHHHHHHH
Q psy2349 8 KEVLVHLDLKGAP---P---SLTYLKEILPILA-YTGATSL-LIEWEDTL-PYSLG-----FDNTNPFRETEIFIILAAA 73 (164)
Q Consensus 8 ~~Rg~~lD~~r~~---~---~~~~lk~~i~~la-~~k~N~l-~l~~ed~~-p~~~~-----~~~~~~yT~~dir~iv~yA 73 (164)
+.-||.||++..| + +.+.+.++++.+. ..|+..| ++|+.|+. ++.+. --+.|..-.+-++.|+...
T Consensus 301 ~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS~~DRH~~IG~G~Ig~~~f~~l~~~~ 380 (413)
T PTZ00372 301 SRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGSGLDRHENIGKGKLGMETFKFIMNSK 380 (413)
T ss_pred CCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCCCcccccCcCCCCcChHHHHHHHhCh
Confidence 3469999996544 4 3446666776663 4555554 36777653 44332 2236788899999999999
Q ss_pred HHcCCeEeeccCC
Q psy2349 74 ESNGLASIPLVPL 86 (164)
Q Consensus 74 ~~~gI~VIPeid~ 86 (164)
+-.+|-+|-|..-
T Consensus 381 ~~~~iP~ILETP~ 393 (413)
T PTZ00372 381 YFKNIPIILETPD 393 (413)
T ss_pred hhCCCeEEEeCCC
Confidence 9999999988543
No 169
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=57.99 E-value=19 Score=30.91 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCe-Eeec--cCCcchHH
Q psy2349 59 NPFRETEIFIILAAAESNGLA-SIPL--VPLYSDMD 91 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~-VIPe--id~pGH~~ 91 (164)
...|.+++.+.++.+++.|+. |.-. +..||.+.
T Consensus 139 R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~ 174 (375)
T PRK05628 139 RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESD 174 (375)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCH
Confidence 468999999999999999987 4222 23477774
No 170
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=57.74 E-value=44 Score=29.74 Aligned_cols=58 Identities=7% Similarity=0.112 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
+.++-|.++|+....-++-.+.+-++.+ ...++.-|-+-+|++-+.|++++|.|+=..
T Consensus 169 ~D~~kLe~lidevG~~nvp~I~~tiT~N------sagGQpVSm~n~r~v~~ia~ky~ipvv~Da 226 (471)
T COG3033 169 FDLEKLERLIDEVGADNVPYIVLTITNN------SAGGQPVSMANMKAVYEIAKKYDIPVVMDA 226 (471)
T ss_pred cCHHHHHHHHHHhCcccCcEEEEEEecc------ccCCCcchHHhHHHHHHHHHHcCCcEEeeh
Confidence 5678888888877776666666666654 345679999999999999999999998544
No 171
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=57.60 E-value=46 Score=27.24 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
.+++++.++++.+...|+.. +.+.|+. |..+++++.++++..+++
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~--i~l~DT~---------G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATT--INIPDTV---------GYLTPEEFGELIKKLKEN 184 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCE--EEECCCC---------CCCCHHHHHHHHHHHHHh
Confidence 46677777777777777664 3445543 677778888877777764
No 172
>PRK08636 aspartate aminotransferase; Provisional
Probab=57.49 E-value=14 Score=31.83 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+..||.+++++|++.|+++++-||
T Consensus 188 TG~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 188 TTATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEE
Confidence 4679999999999999999999877
No 173
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.30 E-value=77 Score=26.70 Aligned_cols=105 Identities=9% Similarity=0.040 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHhcCCC--EEEEEee--ccCCCCC---C-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 20 PPSLTYLKEILPILAYTGAT--SLLIEWE--DTLPYSL---G-FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N--~l~l~~e--d~~p~~~---~-~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
..+-+.+.++++.+...++- .++|.+. ....-.. . .-+...| -|.+++++.-+++||+|++-|+-.=..
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~F--Pdp~~mi~~L~~~G~k~~~~v~P~v~~- 96 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAF--PDPAGMIADLAKKGVKTIVITEPFVLK- 96 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccC--CCHHHHHHHHHHcCCcEEEEEcCcccC-
Confidence 35788999999999998884 4544321 1000000 1 0112233 267899999999999999988632111
Q ss_pred HHhcCccchhhhc------------------CCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 92 FVLKVKEFAKMRQ------------------NFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 92 ~~l~~~~~~~l~~------------------~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
..+.|.++.+ .......+|.+||++.++..+.++++
T Consensus 97 ---~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 150 (317)
T cd06598 97 ---NSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL 150 (317)
T ss_pred ---CchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh
Confidence 1122221111 01134678999999999998888876
No 174
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=57.29 E-value=65 Score=27.47 Aligned_cols=78 Identities=19% Similarity=0.098 Sum_probs=54.7
Q ss_pred ceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeecc-CCCCCCCCCCCCCCHHHHHHHHHHHHHcCCe---Eeecc
Q psy2349 9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT-LPYSLGFDNTNPFRETEIFIILAAAESNGLA---SIPLV 84 (164)
Q Consensus 9 ~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~-~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~---VIPei 84 (164)
--|+|+-++ -+.+.+.+.++.|...|..-+ .+.|- .|-..++.-..++|++|.+++-++|.+.|.. .=|.+
T Consensus 216 KSgiMlGLG---Et~~Ev~e~m~DLr~~gvdil--TiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~sgPlv 290 (306)
T COG0320 216 KSGLMVGLG---ETDEEVIEVMDDLRSAGVDIL--TIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVASGPLV 290 (306)
T ss_pred ccceeeecC---CcHHHHHHHHHHHHHcCCCEE--EeccccCCccccCCceeccCHHHHHHHHHHHHHccchhhccCccc
Confidence 357888765 366889999999999999865 44442 2433335556799999999999999999863 23444
Q ss_pred CCcchHH
Q psy2349 85 PLYSDMD 91 (164)
Q Consensus 85 d~pGH~~ 91 (164)
-+-=|++
T Consensus 291 RSSYhA~ 297 (306)
T COG0320 291 RSSYHAD 297 (306)
T ss_pred ccccchH
Confidence 4444443
No 175
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=57.21 E-value=82 Score=26.75 Aligned_cols=108 Identities=9% Similarity=-0.096 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCC--CCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLP--YSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL 94 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p--~~~~-~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l 94 (164)
....+-+.+.++++.+...++..=.+.++..+- +... +. ...|. |.+.+++.-++.|++|++-++-.=..+.
T Consensus 18 ~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d-~~~FP--dp~~mi~~L~~~G~k~~~~~~P~v~~~~-- 92 (339)
T cd06603 18 WNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWD-KKKFP--DPEKMQEKLASKGRKLVTIVDPHIKRDD-- 92 (339)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeC-cccCC--CHHHHHHHHHHCCCEEEEEecCceecCC--
Confidence 445678999999999999998543344432211 1000 21 22332 7788999999999999998873211100
Q ss_pred cCccchhhh-----------------cCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 95 KVKEFAKMR-----------------QNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 95 ~~~~~~~l~-----------------~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
.++.|.... ..+.....+|.+||++.+...+.++++
T Consensus 93 ~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 93 GYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred CCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 001111111 011234589999999999999998887
No 176
>PLN02368 alanine transaminase
Probab=56.90 E-value=14 Score=32.30 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=23.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 56 DNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 56 ~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
..+..||++++++|++.|+++++-||-
T Consensus 222 PTG~v~s~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 222 PTGQCLSEANLREILKFCYQERLVLLG 248 (407)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 335699999999999999999998873
No 177
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.89 E-value=27 Score=28.72 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=57.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHH-HHHHHHcCCeEeeccCCcchH
Q psy2349 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFII-LAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 12 ~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~i-v~yA~~~gI~VIPeid~pGH~ 90 (164)
+.+.+.-.+++.+-+..+|+..+++|++.++.-+++---.. +.....--.+.++.| ++.|.+-|..+||+|..|=..
T Consensus 78 ~~i~l~~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k--~~~~~~~kler~~ki~ieAaEQs~R~~vP~I~~~~~~ 155 (246)
T COG1385 78 LKITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVK--LDGKKAAKLERWQKIAIEAAEQSGRNVVPEIKPPESL 155 (246)
T ss_pred ceEEEEEEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEe--ccccchhHHHHHHHHHHHHHHhcCCCcCCeeechhhH
Confidence 34555666777888999999999999999987665421010 111111134555554 567788899999999999999
Q ss_pred HHHhcC
Q psy2349 91 DFVLKV 96 (164)
Q Consensus 91 ~~~l~~ 96 (164)
..+++.
T Consensus 156 ~~~l~~ 161 (246)
T COG1385 156 KELLKE 161 (246)
T ss_pred HHHHHh
Confidence 877763
No 178
>PLN02721 threonine aldolase
Probab=56.83 E-value=73 Score=26.23 Aligned_cols=58 Identities=16% Similarity=-0.030 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcCC-CEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 21 PSLTYLKEILPILAYTGA-TSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~-N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+.++.+++.|+....-+. +.-.+.++..+.- ..+..++.+++++|.+.|+++|+-||=
T Consensus 118 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~n----p~G~~~~~~~l~~l~~l~~~~g~~liv 176 (353)
T PLN02721 118 MDLDAIEAAIRPKGDDHFPTTRLICLENTHAN----CGGRCLSVEYTDKVGELAKRHGLKLHI 176 (353)
T ss_pred cCHHHHHHHHHhccCCCCCcceEEEEeccccc----cCCccccHHHHHHHHHHHHHcCCEEEE
Confidence 566777776653321111 2223344332111 113468999999999999999998864
No 179
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=56.79 E-value=42 Score=29.13 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeEeeccCCcch
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN-GLASIPLVPLYSD 89 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~-gI~VIPeid~pGH 89 (164)
...++.+.++++++.++..|+..+.+ + ++..+-..|+.+|++++++. |+..| .|.|-|.
T Consensus 87 ~~~ls~eei~~~i~~~~~~Gv~~I~~--t----------GGEPllr~dl~eli~~l~~~~gi~~i-~itTNG~ 146 (373)
T PLN02951 87 SHLLSQDEIVRLAGLFVAAGVDKIRL--T----------GGEPTLRKDIEDICLQLSSLKGLKTL-AMTTNGI 146 (373)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEE--E----------CCCCcchhhHHHHHHHHHhcCCCceE-EEeeCcc
Confidence 35689999999999999999987644 2 13344455677788887775 65422 3345554
No 180
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=56.71 E-value=55 Score=23.54 Aligned_cols=66 Identities=24% Similarity=0.173 Sum_probs=44.3
Q ss_pred eeEEEeCCCCCC-C--HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 10 VLVHLDLKGAPP-S--LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 10 Rg~~lD~~r~~~-~--~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
.|-.+=.++... . .+.++++|+.|+..|+-++-+.....++ .++ ++++++|.++++ |-|.+
T Consensus 42 ~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~---~iP----------~~~i~~A~~~~l---Pli~i 105 (123)
T PF07905_consen 42 GGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD---EIP----------EEIIELADELGL---PLIEI 105 (123)
T ss_pred CCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc---cCC----------HHHHHHHHHcCC---CEEEe
Confidence 344443444443 3 3569999999999999999887764332 122 688999999986 55556
Q ss_pred cchHH
Q psy2349 87 YSDMD 91 (164)
Q Consensus 87 pGH~~ 91 (164)
|-+..
T Consensus 106 p~~~~ 110 (123)
T PF07905_consen 106 PWEVP 110 (123)
T ss_pred CCCCC
Confidence 65543
No 181
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=56.51 E-value=1e+02 Score=25.43 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES 75 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~ 75 (164)
-...+-++++++.+...|++++.+- |.......+|.+|-+++++.+.+
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~~~--------Gs~GE~~~ls~~Er~~~~~~~~~ 65 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLVVV--------GTTGESPTLTHEEHEELIRAVVE 65 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC--------CcCCccccCCHHHHHHHHHHHHH
Confidence 3677889999999999999998541 10112235666666666665555
No 182
>PRK05942 aspartate aminotransferase; Provisional
Probab=56.41 E-value=14 Score=31.54 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 184 G~~~s~~~~~~i~~~a~~~~~~iI 207 (394)
T PRK05942 184 TATAPREFFEEIVAFARKYEIMLV 207 (394)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEE
Confidence 568999999999999999999887
No 183
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=56.36 E-value=71 Score=27.69 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=56.5
Q ss_pred cCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccc-hhh------------
Q psy2349 36 TGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEF-AKM------------ 102 (164)
Q Consensus 36 ~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~-~~l------------ 102 (164)
.|+..+. +... -|....++ .-+|.+|++++++||.++|.++.=-+++.=|.+..-...++ ..+
T Consensus 25 ~GADaVY--~G~~-~~~~R~~a-~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~D 100 (347)
T COG0826 25 AGADAVY--IGEK-EFGLRRRA-LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVAD 100 (347)
T ss_pred cCCCEEE--eCCc-cccccccc-ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcC
Confidence 4577653 3322 23333333 57999999999999999999999999998888543211111 111
Q ss_pred -------hcCC-----CCCCcccCCChhhHHHHHHH
Q psy2349 103 -------RQNF-----NDTRFICPNARSSLDLVFKM 126 (164)
Q Consensus 103 -------~~~~-----~~~~~l~p~~~~t~~~~~~l 126 (164)
++.. +-..+.+.+|..+.+|..++
T Consensus 101 pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~ 136 (347)
T COG0826 101 PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKEL 136 (347)
T ss_pred HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHc
Confidence 1111 12357788899999998886
No 184
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=56.20 E-value=74 Score=22.92 Aligned_cols=29 Identities=7% Similarity=0.025 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHcC--CeEeeccCCcchH
Q psy2349 62 RETEIFIILAAAESNG--LASIPLVPLYSDM 90 (164)
Q Consensus 62 T~~dir~iv~yA~~~g--I~VIPeid~pGH~ 90 (164)
.+.+++++++.+++.. +-||.++|-.|-.
T Consensus 50 ~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~ 80 (148)
T smart00857 50 DRPGLQRLLADLRAGDIDVLVVYKLDRLGRS 80 (148)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEeccchhhCc
Confidence 4677777777776655 6677777776664
No 185
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=56.18 E-value=33 Score=28.96 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
++++.| |++||+++||.|.--=.
T Consensus 169 ~~~q~e---l~~~~~~~gI~v~AysP 191 (280)
T COG0656 169 YLRQPE---LLPFCQRHGIAVEAYSP 191 (280)
T ss_pred CCCcHH---HHHHHHHcCCEEEEECC
Confidence 556666 99999999999985433
No 186
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=56.18 E-value=83 Score=26.70 Aligned_cols=109 Identities=8% Similarity=0.025 Sum_probs=63.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC--EEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc-----ch
Q psy2349 18 GAPPSLTYLKEILPILAYTGAT--SLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLY-----SD 89 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N--~l~l~~ed~~p~~~~-~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~p-----GH 89 (164)
-...+-+.++++++.+...++- .+.|.+.-.-.+..- +. +..|. |.+++++.-+++|+++++-++-. +.
T Consensus 18 ~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d-~~~fP--dp~~m~~~l~~~g~~~~~~~~P~v~~~~~~ 94 (339)
T cd06604 18 WSYYPEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWD-KERFP--DPKELIKELHEQGFKVVTIIDPGVKVDPGY 94 (339)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeec-cccCC--CHHHHHHHHHHCCCEEEEEEeCceeCCCCC
Confidence 3446788999999999999884 444432210011100 21 22332 56899999999999999776532 21
Q ss_pred H---HHH-----hcCcc---chhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 90 M---DFV-----LKVKE---FAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 90 ~---~~~-----l~~~~---~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
. +.. ++... |.. .........+|.+||++.++-.+.++++
T Consensus 95 ~~~~e~~~~g~~v~~~~g~~~~~-~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 95 DVYEEGLENDYFVKDPDGELYIG-RVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred hHHHHHHHCCeEEECCCCCEEEE-EecCCCccccCCCChHHHHHHHHHHHHH
Confidence 1 111 01000 000 0011124568999999999999988876
No 187
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=56.14 E-value=26 Score=28.71 Aligned_cols=53 Identities=15% Similarity=-0.009 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 28 EILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 28 ~~i~~la~~k~N~l~l~~ed~~p~~~~-~~~~~~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
+.++.|...|++.+.+-+| .-|-... +. + ..|.++..+.++.+++.||.|..-
T Consensus 124 e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~-~~s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 124 EQAKRLKDAGLDYYNHNLD-TSQEFYSNII-S-THTYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHcCCCEEEEccc-CCHHHHhhcc-C-CCCHHHHHHHHHHHHHcCCEEEEe
Confidence 3344445555555554444 2111111 22 2 358899999999999999997554
No 188
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=56.00 E-value=39 Score=28.35 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 61 FRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 61 yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
+-.++-.++.++|+++||..||.+-
T Consensus 131 LP~ee~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 131 LPPEESDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEeC
Confidence 4567788999999999999999874
No 189
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=55.85 E-value=50 Score=27.15 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 60 PFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
.+|.+|.++|.++|++.|+.|+-.
T Consensus 101 g~~~e~~~~l~~aA~~~g~~v~~a 124 (266)
T TIGR00036 101 GFSEEDKQELADLAEKAGIAAVIA 124 (266)
T ss_pred CCCHHHHHHHHHHHhcCCccEEEE
Confidence 479999999999999988666543
No 190
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=55.81 E-value=31 Score=29.14 Aligned_cols=66 Identities=8% Similarity=0.007 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHh-cCCC-EEEEEeeccCCCC-----------CCCCCCCCCCH----HHHHHHHHHHHHcCCeEeeccC
Q psy2349 23 LTYLKEILPILAY-TGAT-SLLIEWEDTLPYS-----------LGFDNTNPFRE----TEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 23 ~~~lk~~i~~la~-~k~N-~l~l~~ed~~p~~-----------~~~~~~~~yT~----~dir~iv~yA~~~gI~VIPeid 85 (164)
.+.+..+++.+|. .+++ -+-||+++...++ +-+-.+..++- +.-|+++++|..+||.|=-|+=
T Consensus 60 ~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG 139 (286)
T PRK08610 60 FYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELG 139 (286)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5666666666664 2321 3556766543221 11111233433 4578999999999999988875
Q ss_pred Ccc
Q psy2349 86 LYS 88 (164)
Q Consensus 86 ~pG 88 (164)
.-|
T Consensus 140 ~vg 142 (286)
T PRK08610 140 TVG 142 (286)
T ss_pred ccC
Confidence 543
No 191
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=55.80 E-value=28 Score=29.76 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHcCCe-Eee--ccCCcchHH
Q psy2349 60 PFRETEIFIILAAAESNGLA-SIP--LVPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~-VIP--eid~pGH~~ 91 (164)
..|.+++.+.++.+++.|+. |-. -+-+||.+.
T Consensus 132 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~ 166 (360)
T TIGR00539 132 QHSAKNIAPAIETALKSGIENISLDLMYGLPLQTL 166 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCH
Confidence 67999999999999999996 434 355688874
No 192
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=55.78 E-value=15 Score=31.63 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||++++++|++.|+++++-||
T Consensus 187 G~~~s~~~~~~l~~~a~~~~~~iI 210 (402)
T TIGR03542 187 GTVLTKEQLKELVDYANEHGSLIL 210 (402)
T ss_pred CccCCHHHHHHHHHHHHHcCeEEE
Confidence 569999999999999999998776
No 193
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=55.68 E-value=22 Score=31.99 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec--cCCcchH
Q psy2349 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL--VPLYSDM 90 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPe--id~pGH~ 90 (164)
.++++.|+..|.+.+.+-+|..-+-....-++ ..|.+++.+.++.+++.||.+.-. +-.||.+
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K-~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et 351 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFRK-GTTTSTNKEAIRLLRQHNILSEAQFITGFENET 351 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhcC-CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCC
Confidence 45666666667766666554322211111122 458999999999999999987654 3446665
No 194
>PRK09082 methionine aminotransferase; Validated
Probab=55.01 E-value=14 Score=31.60 Aligned_cols=24 Identities=0% Similarity=0.087 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++++-||
T Consensus 177 G~~~~~~~~~~i~~~a~~~~i~li 200 (386)
T PRK09082 177 GTVWSAADMRALWQLIAGTDIYVL 200 (386)
T ss_pred CcCCCHHHHHHHHHHHHHCCEEEE
Confidence 568899999999999999999887
No 195
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=54.76 E-value=14 Score=31.53 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++++-||
T Consensus 180 G~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 180 GAVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred CccCCHHHHHHHHHHHHHcCeEEE
Confidence 569999999999999999999886
No 196
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=54.75 E-value=30 Score=31.24 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCCEEE--EEeeccCCCCCCCCCCCCCCHH---HHHHHHHHHHHcCCeEeecc---CCcchHH
Q psy2349 25 YLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRET---EIFIILAAAESNGLASIPLV---PLYSDMD 91 (164)
Q Consensus 25 ~lk~~i~~la~~k~N~l~--l~~ed~~p~~~~~~~~~~yT~~---dir~iv~yA~~~gI~VIPei---d~pGH~~ 91 (164)
..++=|++|+.+|+|..+ |.|+--+|-.. .+...++ =.+++++.+.++||+.|--+ |+|....
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~----~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~ 140 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGD----EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLV 140 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCC----CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHH
Confidence 578999999999999876 56666666421 1223444 45789999999999988764 8888663
No 197
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=54.50 E-value=30 Score=29.64 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCEE-EEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 27 KEILPILAYTGATSL-LIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 27 k~~i~~la~~k~N~l-~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
+++++.|..+|++-. .+.+.|. ..||.+|+..|.+.|++.|.-|..|
T Consensus 240 ~~F~~~L~~~G~~~~~~~~f~DH----------h~yt~~dl~~l~~~a~~~~~iltTe 287 (326)
T PF02606_consen 240 ERFFDTLESLGIEVVGTLAFPDH----------HRYTEQDLEKLEAEAKAAGIILTTE 287 (326)
T ss_pred HHHHHHHHHcCCeEEEeeECCCC----------CCCCHHHHHHHHHhhcccceEEecH
Confidence 567777888888766 3444443 5899999999999999988333333
No 198
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=54.34 E-value=85 Score=25.90 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=45.0
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+.-.-|..|. +++++.++++.+...|++.+ .+.|+. |..+++++.+++...+++- . ..|..=+|
T Consensus 129 ~~~~eda~r~--~~~~l~~~~~~~~~~g~~~i--~l~Dt~---------G~~~P~~v~~~~~~~~~~~-~--~~i~~H~H 192 (262)
T cd07948 129 RFSSEDSFRS--DLVDLLRVYRAVDKLGVNRV--GIADTV---------GIATPRQVYELVRTLRGVV-S--CDIEFHGH 192 (262)
T ss_pred EEEEEeeCCC--CHHHHHHHHHHHHHcCCCEE--EECCcC---------CCCCHHHHHHHHHHHHHhc-C--CeEEEEEC
Confidence 3444566664 47888888888888888854 556654 7889999999999887753 2 23455555
Q ss_pred H
Q psy2349 90 M 90 (164)
Q Consensus 90 ~ 90 (164)
-
T Consensus 193 n 193 (262)
T cd07948 193 N 193 (262)
T ss_pred C
Confidence 4
No 199
>PLN03059 beta-galactosidase; Provisional
Probab=54.33 E-value=47 Score=32.31 Aligned_cols=74 Identities=8% Similarity=0.032 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEE--eeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee--------ccCCcchH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP--------LVPLYSDM 90 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~--~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP--------eid~pGH~ 90 (164)
.++++=++.|..|.+.|+|++..+ |.-.-|-.+.+. +=...|+...++.|++.|+-||- |.|.-|-=
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~d---F~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP 132 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYY---FEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFP 132 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeee---ccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCc
Confidence 467888999999999999999754 433334444311 11268999999999999999985 44444554
Q ss_pred HHHhcCc
Q psy2349 91 DFVLKVK 97 (164)
Q Consensus 91 ~~~l~~~ 97 (164)
.|+++.|
T Consensus 133 ~WL~~~~ 139 (840)
T PLN03059 133 VWLKYVP 139 (840)
T ss_pred hhhhcCC
Confidence 5655433
No 200
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=54.09 E-value=1.8e+02 Score=27.60 Aligned_cols=122 Identities=13% Similarity=0.149 Sum_probs=71.2
Q ss_pred CCCceeEEEeCCC-CCCCH----HHHHHHHHHHHhcCCCEEEEEe-eccCCC-CCC-----CCCCCCCCHHHHHH-H-HH
Q psy2349 6 TFKEVLVHLDLKG-APPSL----TYLKEILPILAYTGATSLLIEW-EDTLPY-SLG-----FDNTNPFRETEIFI-I-LA 71 (164)
Q Consensus 6 ~~~~Rg~~lD~~r-~~~~~----~~lk~~i~~la~~k~N~l~l~~-ed~~p~-~~~-----~~~~~~yT~~dir~-i-v~ 71 (164)
.-..|.+|+|+-- --+.+ .-|-++|+++..+|+|++.|.- .| |- .|. +.+..-==++|+-. + -+
T Consensus 311 ~~~~r~~~vdld~vyd~dp~q~~~nl~~l~~ri~~~~~~~VyLqafad--p~gdg~~~~lYFpnr~lPmraDlfnrvawq 388 (672)
T PRK14581 311 KNIMRVAHVDLDYLYDPDPAQEKENLDKLVQRISDLRVTHVFLQAFSD--PKGDGNIRQVYFPNRWIPMRQDLFNRVVWQ 388 (672)
T ss_pred cCCceEEEeccccccCCCHHHHhhhHHHHHHHHHhcCCCEEEEEeeeC--CCCCCceeeEEecCCcccHHHhhhhHHHHH
Confidence 3456999999952 22333 4578899999999999998753 22 10 011 23333223445543 3 45
Q ss_pred HHHHcCCeEeeccCCcchHHHHhcCccchhhh--c-----CCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 72 AAESNGLASIPLVPLYSDMDFVLKVKEFAKMR--Q-----NFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 72 yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~--~-----~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
..++.||+|.--.-+.+=.-. =..|.-...+ . .......|+|-+|++.+.|++|+.++
T Consensus 389 l~tR~~v~vyAWmpvl~~~l~-~~~~~~~~~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DL 453 (672)
T PRK14581 389 LASRPDVEVYAWMPVLAFDMD-PSLPRITRIDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDM 453 (672)
T ss_pred HHhhhCceEEEeeehhhccCC-cccchhhhcccccCccccCCCCccccCCCCHHHHHHHHHHHHHH
Confidence 667779999876655442100 0000000000 0 01123469999999999999999999
No 201
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=53.80 E-value=69 Score=27.12 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccCCCCCC--CC--CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 26 LKEILPILAYTGATSLLIEWEDTLPYSLG--FD--NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~ed~~p~~~~--~~--~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
|.++++....+++..+++- ++.+|+.+. +. ..-...+++++++-++++++||++.
T Consensus 50 l~~~l~~~~~~~I~~~R~s-S~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irls 108 (303)
T PRK02308 50 LLRILKYNIAHGIGLFRLS-SSLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRLS 108 (303)
T ss_pred HHHHHHHHHHCCCCEEEcc-cCcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 3344444444554444432 356888876 21 2346789999999999999988654
No 202
>PRK05957 aspartate aminotransferase; Provisional
Probab=53.71 E-value=16 Score=31.28 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 174 G~~~~~~~~~~i~~~a~~~~~~li 197 (389)
T PRK05957 174 GVVYPEALLRAVNQICAEHGIYHI 197 (389)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEE
Confidence 568999999999999999999987
No 203
>PLN02231 alanine transaminase
Probab=53.52 E-value=17 Score=33.11 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
-+.++.|++.+......+.+.=.+.+- + | .-..+..||++++++|++.|+++|+-||
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-n-P---~NPTG~vls~e~l~~Iv~~a~~~~l~lI 308 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-N-P---GNPTGQVLAEENQRDIVEFCKQEGLVLL 308 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-C-C---CCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 467777777765543332222112221 1 2 1233569999999999999999999777
No 204
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=53.43 E-value=1.4e+02 Score=26.91 Aligned_cols=55 Identities=4% Similarity=-0.047 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhc--CCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 20 PPSLTYLKEILPILAYT--GATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~--k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
-++++.+++.+...... +...+. +. .|- -+-+..||++++++|++.|++++|-||
T Consensus 180 ~~~~~~le~a~~~a~~~~~~~k~l~--l~--nP~---NPTG~~~s~e~l~~L~~~a~~~~i~lI 236 (496)
T PLN02376 180 KLTVDAADWAYKKAQESNKKVKGLI--LT--NPS---NPLGTMLDKDTLTNLVRFVTRKNIHLV 236 (496)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeEEE--Ec--CCC---CCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 46677776665544332 233332 22 121 123569999999999999999999765
No 205
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=53.30 E-value=53 Score=25.40 Aligned_cols=46 Identities=13% Similarity=-0.081 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
.++.+...|++.+.+|.+. +...+.+++++|+++|+.+++++-.|+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~--------------~~~~~~~~i~~~~~~g~~~~~~~~~~~ 113 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA--------------DDATIKGAVKAAKKHGKEVQVDLINVK 113 (206)
T ss_pred HHHHHHHcCCCEEEEeccC--------------CHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 4566666676666555431 235789999999999999999875554
No 206
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=53.19 E-value=16 Score=31.44 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++++-||
T Consensus 190 G~~~s~~~~~~l~~~a~~~~~~iI 213 (409)
T PRK07590 190 GTVLTKEQLKAWVDYAKENGSLIL 213 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEE
Confidence 569999999999999999998777
No 207
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=53.11 E-value=1.2e+02 Score=24.87 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEE
Q psy2349 21 PSLTYLKEILPILAYTGATSLLI 43 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l 43 (164)
...+.++++++.+...|++++.+
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v 40 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVV 40 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEE
Confidence 56788999999999999999854
No 208
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=53.05 E-value=31 Score=31.24 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=50.4
Q ss_pred EEeC-CCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC-CC-C---CCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 13 HLDL-KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FD-N---TNPFRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 13 ~lD~-~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~-~~-~---~~~yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
+.|+ =++.--.+++++++......|+.+++|. ..+|-.+ .. + -..=|-+-++++.+.+...|+.+|+|+.
T Consensus 157 QpDLN~~np~v~e~i~~il~fwl~~GvdgfRLD---Av~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~ 232 (470)
T TIGR03852 157 QIDLDVTSETTKRFIRDNLENLAEHGASIIRLD---AFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIH 232 (470)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEe---cchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhh
Confidence 5555 2445556788888898899999999984 3444333 10 0 1134778899999999999999999994
No 209
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=53.03 E-value=12 Score=30.55 Aligned_cols=61 Identities=13% Similarity=0.009 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
.++.+++.++.++.+|.+.+.++... .+- ......-....+-+++|+++|++.||+|.=|-
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~-~~~-~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGS-YLG-QSKEEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCC-CCC-CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 35667888888888888876654321 110 00000012345778999999999999998664
No 210
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=52.97 E-value=20 Score=31.80 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEe---eccCCcchHH
Q psy2349 59 NPFRETEIFIILAAAESNGLASI---PLVPLYSDMD 91 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VI---Peid~pGH~~ 91 (164)
...|.+++.+.++.+++.|+.-| =-+-.||.+.
T Consensus 183 R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~ 218 (453)
T PRK13347 183 RIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTV 218 (453)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCH
Confidence 35899999999999999998622 2345577774
No 211
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=52.81 E-value=17 Score=31.85 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..|+.+++++|++.|+++|+-||
T Consensus 204 G~v~~~~~l~~i~~~a~~~~i~ii 227 (430)
T PLN00145 204 GSVYSYEHLAKIAETARKLGILVI 227 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Confidence 568999999999999999999887
No 212
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=52.68 E-value=36 Score=29.07 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHcCCeEe---eccCCcchHH
Q psy2349 60 PFRETEIFIILAAAESNGLASI---PLVPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VI---Peid~pGH~~ 91 (164)
..|.+++.+.++.+++.|+..| =-+..||.+.
T Consensus 130 ~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~ 164 (350)
T PRK08446 130 IHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNK 164 (350)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCH
Confidence 5789999999999999998632 2344588763
No 213
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=52.56 E-value=48 Score=27.96 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG 77 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~g 77 (164)
...++.+.++++++.++.+|+..+.+. . +.++...|+.+|++++++++
T Consensus 42 ~~~ls~eei~~li~~~~~~Gv~~I~~t--G----------GEPllr~dl~~li~~i~~~~ 89 (329)
T PRK13361 42 DQVLSLEELAWLAQAFTELGVRKIRLT--G----------GEPLVRRGCDQLVARLGKLP 89 (329)
T ss_pred cCCCCHHHHHHHHHHHHHCCCCEEEEE--C----------cCCCccccHHHHHHHHHhCC
Confidence 346899999999999999998876542 1 33445556667777776654
No 214
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.14 E-value=42 Score=28.27 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
.+.-|++++||..+||.|=-||=.-|
T Consensus 114 i~~T~~vv~~Ah~~gvsVEaElG~vg 139 (284)
T PRK12857 114 IALTKKVVEIAHAVGVSVEAELGKIG 139 (284)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeecC
Confidence 34679999999999999988875543
No 215
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=52.12 E-value=16 Score=31.10 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++++-||
T Consensus 179 G~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 179 GAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCEEEE
Confidence 569999999999999999998776
No 216
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=52.07 E-value=18 Score=30.76 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++++-||
T Consensus 179 G~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 179 TAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred CccCCHHHHHHHHHHHHHcCeEEE
Confidence 569999999999999999998776
No 217
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=51.90 E-value=40 Score=30.39 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
++++.|++.|..-..-+.--+.++...+ +..+..++.+++++|.+.|+++||.||=.
T Consensus 154 iD~~~Le~aI~~~~~~~~~lV~~e~t~N------~~GG~pvs~~~l~~I~elA~~~Gl~vi~D 210 (450)
T TIGR02618 154 VDLKKLQKLIDEVGADKIPYICLAVTVN------LAGGQPVSMANMREVRELCEAHGIKVFYD 210 (450)
T ss_pred cCHHHHHHHhccccCcccCceEEEEecc------cCCCeeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5778888877621000111123333322 22356899999999999999999999854
No 218
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=51.86 E-value=39 Score=28.53 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=44.2
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-ec
Q psy2349 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-PL 83 (164)
Q Consensus 14 lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI-Pe 83 (164)
.|++=-..+.+.+.+.++.++..|+....+.-+. | ..+|-++|++.|+++||+|| |.
T Consensus 66 ~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~G-f------------~~~~~~~l~~~a~~~girvlGPN 123 (291)
T PRK05678 66 ANASVIYVPPPFAADAILEAIDAGIDLIVCITEG-I------------PVLDMLEVKAYLERKKTRLIGPN 123 (291)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCC-C------------CHHHHHHHHHHHHHcCCEEECCC
Confidence 5666556777888999999999999887664332 2 25666899999999999999 53
No 219
>KOG3111|consensus
Probab=51.80 E-value=34 Score=27.72 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
.+.++.|+.-|+|.+.+|+|.+. +..+++++.+++|+.+=--+
T Consensus 77 eq~V~~~a~agas~~tfH~E~~q---------------~~~~lv~~ir~~Gmk~G~al 119 (224)
T KOG3111|consen 77 EQWVDQMAKAGASLFTFHYEATQ---------------KPAELVEKIREKGMKVGLAL 119 (224)
T ss_pred HHHHHHHHhcCcceEEEEEeecc---------------CHHHHHHHHHHcCCeeeEEe
Confidence 35677888888888877777531 27889999999988764433
No 220
>PRK06348 aspartate aminotransferase; Provisional
Probab=51.61 E-value=19 Score=30.66 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+..+|.+++++|++.|+++|+-||
T Consensus 175 tG~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 175 TGAVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred CCcCCCHHHHHHHHHHHHHCCeEEE
Confidence 3569999999999999999998776
No 221
>PRK08068 transaminase; Reviewed
Probab=51.50 E-value=19 Score=30.68 Aligned_cols=25 Identities=8% Similarity=-0.009 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+..||.+++++|++.|+++++-||
T Consensus 180 TG~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 180 TGAVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 3569999999999999999999777
No 222
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=51.43 E-value=16 Score=33.10 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 60 PFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
.=|.+|+..++++|+++||.|+|-
T Consensus 62 P~s~eeV~~iv~~a~~~~ipv~~r 85 (499)
T PRK11230 62 PKQMEQVQALLAVCHRLRVPVVAR 85 (499)
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEE
Confidence 348999999999999999999884
No 223
>PLN02803 beta-amylase
Probab=51.41 E-value=2e+02 Score=26.62 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~--~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
+.+-..+.|+..+..|+..|+.++.+.. +.|. -.+.+-|.-.=.+++.+.+++.|+.|.|-+..
T Consensus 101 ~~~~~~~~l~~~L~~LK~~GVdGVmvDV-----WWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSF 166 (548)
T PLN02803 101 GNLNKPRAMNASLMALRSAGVEGVMVDA-----WWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSF 166 (548)
T ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEEe-----eeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEe
Confidence 5778889999999999999999987542 1111 12356788888999999999999999987643
No 224
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=51.02 E-value=41 Score=29.19 Aligned_cols=113 Identities=13% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeecc-----CCCCCCCCC--CCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDT-----LPYSLGFDN--TNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~-----~p~~~~~~~--~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
.+.-....+.+++..++..|+|.+.+.+.|. ||....+.. +..=---||.-++.-|++.||=+|--|=++-.+
T Consensus 71 h~v~~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~ 150 (400)
T COG1306 71 HSVALKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDT 150 (400)
T ss_pred hhhcChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeee
Confidence 4444556677888899999999999988763 333332110 011113589999999999999999998776655
Q ss_pred HH--------Hh-c-Cccchhh-----hcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 91 DF--------VL-K-VKEFAKM-----RQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 91 ~~--------~l-~-~~~~~~l-----~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
-- ++ + .++++.+ +.......=++|-++.+++.=-.+-+|+
T Consensus 151 ~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa 205 (400)
T COG1306 151 ILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEA 205 (400)
T ss_pred eEEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHH
Confidence 20 00 0 1122222 2212233457778888888877777777
No 225
>PLN02417 dihydrodipicolinate synthase
Probab=51.00 E-value=1.4e+02 Score=24.62 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEE
Q psy2349 21 PSLTYLKEILPILAYTGATSLLI 43 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l 43 (164)
...+.++++++.+...|++++.+
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~ 41 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIV 41 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEE
Confidence 66788999999999999999854
No 226
>PRK12677 xylose isomerase; Provisional
Probab=50.94 E-value=23 Score=30.99 Aligned_cols=73 Identities=12% Similarity=0.030 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeec-c--CCCCCCCCCCCCCCHHHHHHHHHHHHHcC--CeEeec-----------cC
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWED-T--LPYSLGFDNTNPFRETEIFIILAAAESNG--LASIPL-----------VP 85 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed-~--~p~~~~~~~~~~yT~~dir~iv~yA~~~g--I~VIPe-----------id 85 (164)
.++.+++.|+..+.+|.+.+.+.-.. . +++...+...--...+=+++|.+||+++| |+|.=| +.
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l~ 191 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILLP 191 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeeeC
Confidence 46779999999999999998886431 1 12221111011223456779999999855 765433 35
Q ss_pred CcchHHHHh
Q psy2349 86 LYSDMDFVL 94 (164)
Q Consensus 86 ~pGH~~~~l 94 (164)
+.||+..++
T Consensus 192 t~~~al~li 200 (384)
T PRK12677 192 TVGHALAFI 200 (384)
T ss_pred CHHHHHHHH
Confidence 566665544
No 227
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=50.78 E-value=37 Score=28.70 Aligned_cols=77 Identities=9% Similarity=-0.020 Sum_probs=44.3
Q ss_pred EEEeCCC---CCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCC-----------CCCCCCCCCCH----HHHHHHHHHH
Q psy2349 12 VHLDLKG---APPSLTYLKEILPILAYTGATSLLIEWEDTLPYS-----------LGFDNTNPFRE----TEIFIILAAA 73 (164)
Q Consensus 12 ~~lD~~r---~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~-----------~~~~~~~~yT~----~dir~iv~yA 73 (164)
++|.++. .+...+.+..++..+|.-----+-||+++...+. +-+-.+..+.- +.-|++++||
T Consensus 45 vIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~A 124 (286)
T PRK12738 45 VILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFC 124 (286)
T ss_pred EEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHH
Confidence 4555541 2355666666666666532223456666543322 11112233433 4679999999
Q ss_pred HHcCCeEeeccCCcc
Q psy2349 74 ESNGLASIPLVPLYS 88 (164)
Q Consensus 74 ~~~gI~VIPeid~pG 88 (164)
..+||.|=-|+=.-|
T Consensus 125 h~~gv~VEaElG~ig 139 (286)
T PRK12738 125 HSQDCSVEAELGRLG 139 (286)
T ss_pred HHcCCeEEEEEEeeC
Confidence 999999988874443
No 228
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=50.69 E-value=1.1e+02 Score=25.39 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=22.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCC
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGAT 39 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N 39 (164)
.+++|+- .-++.+.-.++.+.++.+++.
T Consensus 179 ~l~vD~n-~~~~~~~A~~~~~~l~~~~l~ 206 (316)
T cd03319 179 RLRVDAN-QGWTPEEAVELLRELAELGVE 206 (316)
T ss_pred eEEEeCC-CCcCHHHHHHHHHHHHhcCCC
Confidence 4899984 457778889999999988664
No 229
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=50.67 E-value=42 Score=28.33 Aligned_cols=76 Identities=7% Similarity=0.036 Sum_probs=47.6
Q ss_pred EEEeCC---CCC-CCHHHHHHHHHHHHhcCCC---EEEEEeeccCCCC-----------CCCCCCCCCC----HHHHHHH
Q psy2349 12 VHLDLK---GAP-PSLTYLKEILPILAYTGAT---SLLIEWEDTLPYS-----------LGFDNTNPFR----ETEIFII 69 (164)
Q Consensus 12 ~~lD~~---r~~-~~~~~lk~~i~~la~~k~N---~l~l~~ed~~p~~-----------~~~~~~~~yT----~~dir~i 69 (164)
++|-++ .++ ...+.+..+++.++. ..+ -+-||+++...+. +-+-.+..++ .+.-|++
T Consensus 45 vIiq~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trev 123 (285)
T PRK07709 45 VILGVSEGAARHMTGFKTVVAMVKALIE-EMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKV 123 (285)
T ss_pred EEEEcCcchhhhcCCHHHHHHHHHHHHH-HcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 455554 233 566777778887776 222 4668887654322 2111123343 3468999
Q ss_pred HHHHHHcCCeEeeccCCcc
Q psy2349 70 LAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 70 v~yA~~~gI~VIPeid~pG 88 (164)
+++|..+||.|=-|+=.-|
T Consensus 124 v~~Ah~~gv~VEaElG~ig 142 (285)
T PRK07709 124 VEYAHARNVSVEAELGTVG 142 (285)
T ss_pred HHHHHHcCCEEEEEEeccC
Confidence 9999999999998875544
No 230
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=50.67 E-value=28 Score=27.80 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCC--CCCcccCCChhhHHHHHHHHHhc--ccCCC
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFN--DTRFICPNARSSLDLVFKMIGRM--RFVLG 135 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~--~~~~l~p~~~~t~~~~~~l~~E~--~lf~~ 135 (164)
.+..---|.+-+|-.+.||.|||-|.--+=-++-.. +..+...+. -....+-.+.+..++..+-+.|+ .+-|
T Consensus 93 i~n~yR~r~~g~~~q~~Gi~VIP~v~W~~~~s~~~~---~~gi~~~~ivaist~g~~~~~~~~~~f~~Gl~em~~rl~P- 168 (200)
T PF14386_consen 93 IWNIYRSRWLGAYWQSNGIKVIPNVSWSDKRSFDFC---FDGIPKGSIVAISTNGCINNKEDKKLFLDGLREMLKRLRP- 168 (200)
T ss_pred HHHHHHHHHHHHHHHHCCCeEcceEEecCcchHHHH---HhhcccCCEEEEEEecccCCHHHHHHHHHHHHHHHhccCC-
Confidence 334445678999999999999999875443332111 111111110 01122677888899999999999 6655
Q ss_pred CCeeeccC
Q psy2349 136 TPISPLFC 143 (164)
Q Consensus 136 s~~iHiGg 143 (164)
...+=.|+
T Consensus 169 ~~ilvyG~ 176 (200)
T PF14386_consen 169 KHILVYGG 176 (200)
T ss_pred CeEEEECC
Confidence 78887886
No 231
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=50.57 E-value=15 Score=27.64 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 30 LPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 30 i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
++.++.+|+..+.+...+..+... . .+++.++.+.++++||.|+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~------~--~~~~~~~~~~~~~~gl~i~ 44 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE------K--DDEAEELRRLLEDYGLKIA 44 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH------H--HHHHHHHHHHHHHTTCEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc------c--hHHHHHHHHHHHHcCCeEE
Confidence 467889999998877655432221 1 7899999999999999943
No 232
>PRK06855 aminotransferase; Validated
Probab=50.31 E-value=19 Score=31.44 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+..||.+++++|++.|+++++-||
T Consensus 184 TG~~~s~~~~~~l~~~a~~~~~~II 208 (433)
T PRK06855 184 TGAVYPKEILREIVDIAREYDLFII 208 (433)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 3569999999999999999999887
No 233
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=50.31 E-value=1.5e+02 Score=25.46 Aligned_cols=105 Identities=8% Similarity=-0.097 Sum_probs=64.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCC--CEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGA--TSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~--N~l~l~~ed~~p~~~~-~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~p 87 (164)
|+|. ++-...+.+.++++++.+...++ ..+.+.+.-..-+... +. +..| -|.+++++.-.+.|+.+++-++-.
T Consensus 12 G~~q-sr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d-~~~F--Pdp~~mv~~L~~~G~klv~~i~P~ 87 (332)
T cd06601 12 GFHQ-GCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTN-GGGF--PNPKEMFDNLHNKGLKCSTNITPV 87 (332)
T ss_pred hhhh-CCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeec-CCCC--CCHHHHHHHHHHCCCeEEEEecCc
Confidence 5555 33444689999999999999888 5555544321111111 21 2222 346788888899999998887743
Q ss_pred chHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 88 SDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 88 GH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
-..+ . ..+......|-+||++.+.-.++++.+
T Consensus 88 i~~g---------~--~~~~~~~~pDftnp~ar~wW~~~~~~l 119 (332)
T cd06601 88 ISYG---------G--GLGSPGLYPDLGRPDVREWWGNQYKYL 119 (332)
T ss_pred eecC---------c--cCCCCceeeCCCCHHHHHHHHHHHHHH
Confidence 3311 0 111223467889999988877776654
No 234
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=50.27 E-value=89 Score=30.15 Aligned_cols=116 Identities=13% Similarity=0.071 Sum_probs=73.0
Q ss_pred CCCCCCCceeEEEeCCCC---CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-
Q psy2349 2 VTPSTFKEVLVHLDLKGA---PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG- 77 (164)
Q Consensus 2 ~D~P~~~~Rg~~lD~~r~---~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~g- 77 (164)
++.|..-+||+=+-++.. .+. ..|+.+.+.+...|+..+.+ .+|+ .=|.+|+++++++++.+|
T Consensus 597 E~NP~LG~RGiR~~l~~p~~~lf~-~qlraI~rald~~G~~~~~I----mvPm--------V~s~eEa~~~~~~~~~~g~ 663 (795)
T PRK06464 597 EENPMLGFRGASRYLSESFREAFA-LECEAIKRVREEMGLTNVEV----MIPF--------VRTVEEAEKVIELLAENGL 663 (795)
T ss_pred CCCCccccchhhhcccCchHHHHH-HHHHHHHHHHHhcCCCCeEE----EecC--------CCCHHHHHHHHHHHHHhCc
Confidence 356889999988877654 122 22344444333367777555 3444 447899999999987764
Q ss_pred ------CeEeeccCCcchHHH---HhcCcc--------chhh-----hcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 78 ------LASIPLVPLYSDMDF---VLKVKE--------FAKM-----RQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 78 ------I~VIPeid~pGH~~~---~l~~~~--------~~~l-----~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
+.|+.-|++|.=... +++.=+ +.++ |.+..-....++.+|+..+.++.+++..
T Consensus 664 ~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa 738 (795)
T PRK06464 664 KRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAA 738 (795)
T ss_pred cccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHH
Confidence 458888999876643 333211 1111 1111112367788999999999999888
No 235
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=50.05 E-value=22 Score=30.02 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++|+-||
T Consensus 155 G~~~~~~~~~~l~~~a~~~~~~ii 178 (354)
T PRK06358 155 GQLISKEEMKKILDKCEKRNIYLI 178 (354)
T ss_pred CCccCHHHHHHHHHHHHhcCCEEE
Confidence 568999999999999999999877
No 236
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=50.04 E-value=20 Score=30.71 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++++.||
T Consensus 180 G~~~s~~~~~~l~~~~~~~~~~ii 203 (391)
T PRK07309 180 GVTYSREQIKALADVLKKYDIFVI 203 (391)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEE
Confidence 458999999999999999999877
No 237
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=49.97 E-value=77 Score=28.40 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEE----eec-cCCCCCC---------CCCCCCCCHHHHHHHHHHHH-HcCCeEeeccCCcc
Q psy2349 24 TYLKEILPILAYTGATSLLIE----WED-TLPYSLG---------FDNTNPFRETEIFIILAAAE-SNGLASIPLVPLYS 88 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~----~ed-~~p~~~~---------~~~~~~yT~~dir~iv~yA~-~~gI~VIPeid~pG 88 (164)
+.-.+.++.++..|+|.+|+- ... .-||+.. ...+.-.+.+|+++++.-++ ++|+-++=.| +.-
T Consensus 22 ~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-V~N 100 (423)
T PF14701_consen 22 SDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-VLN 100 (423)
T ss_pred hHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE-eec
Confidence 345666799999999988642 111 2355543 33455688899999999985 7999888776 355
Q ss_pred hH----HHHhcCcc
Q psy2349 89 DM----DFVLKVKE 98 (164)
Q Consensus 89 H~----~~~l~~~~ 98 (164)
|+ .|+..||+
T Consensus 101 HtA~nS~Wl~eHPE 114 (423)
T PF14701_consen 101 HTANNSPWLREHPE 114 (423)
T ss_pred cCcCCChHHHhCcc
Confidence 65 46667776
No 238
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=49.87 E-value=79 Score=27.46 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=44.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 15 DLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 15 D~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
|.+| .+++++.++++.+...|++.+ .+-|+. |..++.++.++++..+++- .+ .|..=+|-
T Consensus 138 d~~r--~~~~~l~~~~~~~~~~Ga~~I--~l~DT~---------G~~~P~~v~~lv~~l~~~~-~~--~l~~H~Hn 197 (378)
T PRK11858 138 DASR--TDLDFLIEFAKAAEEAGADRV--RFCDTV---------GILDPFTMYELVKELVEAV-DI--PIEVHCHN 197 (378)
T ss_pred cCCC--CCHHHHHHHHHHHHhCCCCEE--EEeccC---------CCCCHHHHHHHHHHHHHhc-CC--eEEEEecC
Confidence 4445 478999999999999999865 555653 7999999999999987653 22 25555664
No 239
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=49.85 E-value=33 Score=29.41 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEee-c--cCCcchHH
Q psy2349 59 NPFRETEIFIILAAAESNGLASIP-L--VPLYSDMD 91 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIP-e--id~pGH~~ 91 (164)
...|.+++.+.++.+++.|+..|- . +-.||-+.
T Consensus 131 r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~ 166 (377)
T PRK08599 131 RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTI 166 (377)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCH
Confidence 367899999999999999986432 1 35577664
No 240
>PRK05660 HemN family oxidoreductase; Provisional
Probab=49.85 E-value=29 Score=30.03 Aligned_cols=33 Identities=18% Similarity=-0.017 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEe---eccCCcchHH
Q psy2349 59 NPFRETEIFIILAAAESNGLASI---PLVPLYSDMD 91 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VI---Peid~pGH~~ 91 (164)
...|.+++.+.++.|++.|+..| =-+-+||.+.
T Consensus 138 r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~ 173 (378)
T PRK05660 138 RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSL 173 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCH
Confidence 35799999999999999999654 2355677763
No 241
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=49.82 E-value=11 Score=34.61 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCeE------------------eeccCCcchHHH
Q psy2349 64 TEIFIILAAAESNGLAS------------------IPLVPLYSDMDF 92 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~V------------------IPeid~pGH~~~ 92 (164)
+|+-+=.+.-++|||+| .=.||||||.++
T Consensus 43 ~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 43 AQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred HHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 34445567788999986 456999999964
No 242
>PRK06108 aspartate aminotransferase; Provisional
Probab=49.75 E-value=19 Score=30.22 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 172 G~~~~~~~~~~l~~~~~~~~~~li 195 (382)
T PRK06108 172 GWTASRDDLRAILAHCRRHGLWIV 195 (382)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEE
Confidence 457899999999999999998776
No 243
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=49.70 E-value=44 Score=28.78 Aligned_cols=25 Identities=4% Similarity=-0.105 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 64 TEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
+.-|+++++|..+||.|=-|+=.-|
T Consensus 126 ~~T~evv~~Ah~~GvsVEaElG~ig 150 (321)
T PRK07084 126 ALTKKVVEYAHQFDVTVEGELGVLA 150 (321)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeec
Confidence 4579999999999999988875443
No 244
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=49.70 E-value=62 Score=26.67 Aligned_cols=44 Identities=25% Similarity=0.116 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
+++++.++++.+...|++.+ .+.|+. |..|+.+++++++..++.
T Consensus 149 ~~~~~~~~~~~~~~~g~~~i--~l~DT~---------G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 149 NPEYALATLKAAAEAGADWL--VLCDTN---------GGTLPHEIAEIVKEVRER 192 (273)
T ss_pred CHHHHHHHHHHHHhCCCCEE--EEecCC---------CCCCHHHHHHHHHHHHHh
Confidence 45666666666666666643 344443 667777777777776653
No 245
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=49.60 E-value=63 Score=26.69 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
...+.+++.+++..+...|+..+ .+.|+. |..+++++.++++..+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~Ga~~i--~l~DT~---------G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 144 PVHTLEYYVKLAKELEDMGADSI--CIKDMA---------GLLTPYAAYELVKALKKE 190 (275)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE--EEcCCC---------CCCCHHHHHHHHHHHHHh
Confidence 34556666666666666666643 334442 667777777777766653
No 246
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=49.54 E-value=17 Score=33.47 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeEee
Q psy2349 60 PFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIP 82 (164)
.=|.+|+.+++++|+++||.|+|
T Consensus 140 P~s~eeV~~ivk~a~~~~ipv~p 162 (555)
T PLN02805 140 PRSEEEVSKIVKSCNKYKVPIVP 162 (555)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEE
Confidence 44899999999999999999999
No 247
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=49.53 E-value=21 Score=30.72 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccC
Q psy2349 62 RETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFV 133 (164)
Q Consensus 62 T~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf 133 (164)
.-.++..++.+++.+||.++.-+|..+-............+-.+-...-.+.+.+++|-+++.+++.+. ...
T Consensus 277 ~i~~l~~~~~~~r~~gi~~~~~~Q~~~Ql~~~Yg~~~a~~i~~n~~~~~~~~~~d~~ta~~iS~~lG~~tv~~ 349 (384)
T cd01126 277 KLETFEKAIAIMAGYGIRLLLIFQSLAQLEGTYGDAGASSFLSNCGVRLFFAVNDYETARYISKLLGTYTVEV 349 (384)
T ss_pred chHHHHHHHHHhcCCCCEEEEEEEcHHHHHHHhCHhHHHHHHhhCceEEEecCCCHHHHHHHHHHcCCcEEEE
Confidence 347899999999999999999999999887654322222222222222345677899999999999997 444
No 248
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=49.53 E-value=47 Score=26.76 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHh-cCCCEEEEEeeccCCCCCC------------CCCCC-CCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 21 PSLTYLKEILPILAY-TGATSLLIEWEDTLPYSLG------------FDNTN-PFRETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 21 ~~~~~lk~~i~~la~-~k~N~l~l~~ed~~p~~~~------------~~~~~-~yT~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
.+.+..+.++...+. ++-+++.+-+. -|-+.|. ++..+ .+-..|+.+|.+.|++.|++.+--++|
T Consensus 115 ~p~~~~~~lf~~a~~~L~~gG~L~~YG-PF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~M 193 (204)
T PF06080_consen 115 SPWSAVEGLFAGAARLLKPGGLLFLYG-PFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDM 193 (204)
T ss_pred cCHHHHHHHHHHHHHhCCCCCEEEEeC-CcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCccccc
Confidence 344445556655543 45566554443 1222222 23323 467779999999999999999999999
Q ss_pred cch
Q psy2349 87 YSD 89 (164)
Q Consensus 87 pGH 89 (164)
|..
T Consensus 194 PAN 196 (204)
T PF06080_consen 194 PAN 196 (204)
T ss_pred CCC
Confidence 974
No 249
>PRK06207 aspartate aminotransferase; Provisional
Probab=49.32 E-value=22 Score=30.65 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+..+|.+++++|++.|+++|+-||
T Consensus 191 TG~~~s~e~l~~l~~~a~~~~~~iI 215 (405)
T PRK06207 191 AGVVYSAEEIAQIAALARRYGATVI 215 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 3568999999999999999998776
No 250
>PLN02656 tyrosine transaminase
Probab=49.24 E-value=21 Score=30.81 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 183 G~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 183 GNVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Confidence 568999999999999999998776
No 251
>PLN02187 rooty/superroot1
Probab=49.22 E-value=22 Score=31.53 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++|+-||
T Consensus 218 G~v~s~e~l~~i~~~a~~~~i~iI 241 (462)
T PLN02187 218 GNVYSHDHLKKVAETARKLGIMVI 241 (462)
T ss_pred CCccCHHHHHHHHHHHHHCCCEEE
Confidence 568999999999999999998776
No 252
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=49.18 E-value=6.9 Score=35.77 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.0
Q ss_pred HHHHcCCeE-------------eeccCCcchHHH
Q psy2349 72 AAESNGLAS-------------IPLVPLYSDMDF 92 (164)
Q Consensus 72 yA~~~gI~V-------------IPeid~pGH~~~ 92 (164)
.-++|||+| |=-||||||+++
T Consensus 48 lEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 48 LEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred hhhhcCcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 456777776 567999999964
No 253
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=49.14 E-value=44 Score=28.73 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCEEEEEeeccCCCCCC-----CCC-CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 27 KEILPILAYTGATSLLIEWEDTLPYSLG-----FDN-TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed~~p~~~~-----~~~-~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
|.+++.+|.+--|.+.+-+- +.|.-. .+. .-.+|++|+.+.++||++.|++-+.
T Consensus 274 kpI~~wiae~~g~~~~vNiM--~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 274 KPILRWIAENLGNDVRVNIM--FQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred HHHHHHHHHhCCCCeeEEeh--hhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCceee
Confidence 66788888877765555443 222222 111 2489999999999999999998764
No 254
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=49.13 E-value=21 Score=30.64 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+..||.+++++|++.|+++++-||
T Consensus 192 TG~~~s~~~~~~l~~~a~~~~~~iI 216 (416)
T PRK09440 192 TGNVLTDEELEKLDALARQHNIPLL 216 (416)
T ss_pred CCccCCHHHHHHHHHHHHHcCCcEE
Confidence 3569999999999999999999766
No 255
>PRK07337 aminotransferase; Validated
Probab=49.12 E-value=23 Score=30.11 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+|+++|++.|+++|+-||
T Consensus 177 G~~~~~~~~~~i~~~a~~~~~~ii 200 (388)
T PRK07337 177 GTSIAPDELRRIVEAVRARGGFTI 200 (388)
T ss_pred CcCcCHHHHHHHHHHHHHCCCEEE
Confidence 568999999999999999998776
No 256
>PRK05839 hypothetical protein; Provisional
Probab=49.11 E-value=21 Score=30.33 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++|+-||
T Consensus 169 G~~~s~~~l~~i~~~~~~~~~~ii 192 (374)
T PRK05839 169 GRTLSLEELIEWVKLALKHDFILI 192 (374)
T ss_pred CcccCHHHHHHHHHHHHHcCCEEE
Confidence 569999999999999999999888
No 257
>PRK07681 aspartate aminotransferase; Provisional
Probab=49.11 E-value=22 Score=30.50 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|++++++|++.|+++|+-||
T Consensus 180 G~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 180 PAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEE
Confidence 569999999999999999999877
No 258
>PTZ00376 aspartate aminotransferase; Provisional
Probab=48.93 E-value=23 Score=30.47 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||++++++|++.|+++|+-||
T Consensus 190 G~~~s~~~~~~l~~~a~~~~~~ii 213 (404)
T PTZ00376 190 GVDPTEEQWKEIADVMKRKNLIPF 213 (404)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE
Confidence 569999999999999999999776
No 259
>PTZ00377 alanine aminotransferase; Provisional
Probab=48.89 E-value=23 Score=31.42 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
-++++.|++.+.....-+-+.=.+.+- + | .-+.+..||.+++++|++.|+++++-||
T Consensus 199 ~~d~~~l~~~l~~~~~~~~~~k~l~l~-~-P---~NPTG~~~s~e~~~~i~~~a~~~~~~iI 255 (481)
T PTZ00377 199 SLDQEELEEAYEQAVRNGITPRALVVI-N-P---GNPTGQVLTRDVMEEIIKFCYEKGIVLM 255 (481)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEEE-C-C---CCCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 367777777765432221111112222 1 2 1233569999999999999999999776
No 260
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=48.87 E-value=16 Score=31.82 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeE
Q psy2349 58 TNPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~V 80 (164)
+..||.+|+++|.++|+++||-+
T Consensus 144 GtVy~l~el~~i~~~~k~~~l~L 166 (342)
T COG2008 144 GTVYPLDELEAISAVCKEHGLPL 166 (342)
T ss_pred ceecCHHHHHHHHHHHHHhCCce
Confidence 45999999999999999999865
No 261
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=48.64 E-value=36 Score=29.72 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEe---eccCCcchH
Q psy2349 59 NPFRETEIFIILAAAESNGLASI---PLVPLYSDM 90 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VI---Peid~pGH~ 90 (164)
-..|.+|+.+.++.+++.|+..| =-+.+||-+
T Consensus 146 R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 146 RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 46899999999999999998732 234567766
No 262
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=48.58 E-value=11 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCeEee
Q psy2349 58 TNPFRETEIFIILAAAES-NGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~-~gI~VIP 82 (164)
++++|+.|+++|.+-.++ +||.+=+
T Consensus 2 RH~LSkKe~k~~~~k~~~~ygIdi~~ 27 (65)
T PF09183_consen 2 RHFLSKKEIKEIKEKIKEKYGIDISG 27 (65)
T ss_dssp -EE--HHHHHHHHHHHHT-TT---TT
T ss_pred cccccHHHHHHHHHHHHHHhCcCCCc
Confidence 457899999999999998 9987765
No 263
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=48.40 E-value=42 Score=26.57 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
.++.+++.++++.+.+.|+..|=--||.|.+
T Consensus 133 ~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~ 163 (237)
T PF00682_consen 133 RTDPEELLELAEALAEAGADIIYLADTVGIM 163 (237)
T ss_dssp GSSHHHHHHHHHHHHHHT-SEEEEEETTS-S
T ss_pred cccHHHHHHHHHHHHHcCCeEEEeeCccCCc
Confidence 3444555555555555555555555554444
No 264
>PRK13604 luxD acyl transferase; Provisional
Probab=48.33 E-value=1.4e+02 Score=25.47 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccC-CCCCCCCC-CCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 16 LKGAPPSLTYLKEILPILAYTGATSLLIEWEDTL-PYSLGFDN-TNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 16 ~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~-p~~~~~~~-~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
+.+.--+.....++.+.|+..|+|.+...+-... .-.+.+.. .-.+-.+|+..+++|+++++. ..|=+.||+.
T Consensus 43 ~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~~---~~I~LiG~Sm 117 (307)
T PRK13604 43 ASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRGI---NNLGLIAASL 117 (307)
T ss_pred eCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcCC---CceEEEEECH
Confidence 4433334466899999999999999876432111 01121110 112347899999999999864 5688999995
No 265
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=48.31 E-value=24 Score=29.90 Aligned_cols=24 Identities=4% Similarity=-0.186 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++|+-||
T Consensus 180 G~~~~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 180 GAVADLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred CCCCCHHHHHHHHHHHHHCCcEEE
Confidence 569999999999999999998776
No 266
>PRK08960 hypothetical protein; Provisional
Probab=48.24 E-value=24 Score=30.04 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=22.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 56 DNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 56 ~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
..+..+|.+++++|++.|+++|+-||
T Consensus 177 PtG~~~~~~~~~~l~~~~~~~~~~li 202 (387)
T PRK08960 177 PTGTLLSRDELAALSQALRARGGHLV 202 (387)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEE
Confidence 34678999999999999999998776
No 267
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=48.15 E-value=51 Score=27.74 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=42.7
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 14 lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.|++=-..+.+.+.+.++.+...|+..+.+..+. | ...+-++|++.|+++|++||
T Consensus 64 ~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~G-f------------~e~~~~~l~~~a~~~giril 118 (286)
T TIGR01019 64 ANASVIFVPAPFAADAIFEAIDAGIELIVCITEG-I------------PVHDMLKVKRYMEESGTRLI 118 (286)
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCC-C------------CHHHHHHHHHHHHHcCCEEE
Confidence 4666556677888999999999999988774332 2 33356899999999999999
No 268
>PRK04296 thymidine kinase; Provisional
Probab=47.93 E-value=23 Score=27.49 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
.++++.+|+.++++.++..|++||=-
T Consensus 87 aq~l~~~~v~~l~~~l~~~g~~vi~t 112 (190)
T PRK04296 87 AQFLDKEQVVQLAEVLDDLGIPVICY 112 (190)
T ss_pred cccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 36888999999999999999999854
No 269
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=47.91 E-value=34 Score=29.96 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHcC--CeEeecc--CCcchHH
Q psy2349 60 PFRETEIFIILAAAESNG--LASIPLV--PLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~g--I~VIPei--d~pGH~~ 91 (164)
.+|.++++++++.+++.| |.|...+ -.||-+.
T Consensus 270 ~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ 305 (429)
T TIGR00089 270 KYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETE 305 (429)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCH
Confidence 589999999999999998 7665543 3466653
No 270
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=47.82 E-value=21 Score=31.80 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++++-||
T Consensus 205 G~~~s~e~l~~ll~~a~~~~~~iI 228 (468)
T PLN02450 205 GTTTTRTELNLLVDFITAKNIHLI 228 (468)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEE
Confidence 569999999999999999998877
No 271
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=47.78 E-value=66 Score=31.92 Aligned_cols=108 Identities=6% Similarity=-0.061 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH----
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV---- 93 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~---- 93 (164)
++..+.+.+++.|.+|..+|+|.++.+ .+|.. .+..+.|.++||-|+-|++.-+|..+.
T Consensus 365 G~a~t~e~~~~di~lmK~~g~NaVR~s---HyP~~--------------p~fydlcDe~GilV~dE~~~e~hg~~~~~~~ 427 (1027)
T PRK09525 365 GQVMDEETMVQDILLMKQHNFNAVRCS---HYPNH--------------PLWYELCDRYGLYVVDEANIETHGMVPMNRL 427 (1027)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEec---CCCCC--------------HHHHHHHHHcCCEEEEecCccccCCccccCC
Confidence 456899999999999999999999872 23321 245789999999999998875553210
Q ss_pred hcCccchh--------h-hcCCC--CCCcccCCChhhH-HHHHHHHHhc-ccCCCCCeeeccC
Q psy2349 94 LKVKEFAK--------M-RQNFN--DTRFICPNARSSL-DLVFKMIGRM-RFVLGTPISPLFC 143 (164)
Q Consensus 94 l~~~~~~~--------l-~~~~~--~~~~l~p~~~~t~-~~~~~l~~E~-~lf~~s~~iHiGg 143 (164)
...|+|.. + +...+ +--..+..|+..+ .-...|.+-+ ++=| ++.+|.-+
T Consensus 428 ~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g~~~~~l~~~~k~~Dp-tRpV~y~~ 489 (1027)
T PRK09525 428 SDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGHGANHDALYRWIKSNDP-SRPVQYEG 489 (1027)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCcChhHHHHHHHHHhhCC-CCcEEECC
Confidence 11122211 0 11111 1124455666432 2345666666 6677 88888865
No 272
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=47.71 E-value=88 Score=24.90 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCeE
Q psy2349 59 NPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~V 80 (164)
...|.+++.++.++++++|+.+
T Consensus 223 ~~~~~e~l~~~~~~~~~~g~~~ 244 (246)
T PRK11145 223 KPPSKETMERVKGILEQYGHKV 244 (246)
T ss_pred CCCCHHHHHHHHHHHHHcCCcc
Confidence 4567777777777777777765
No 273
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=47.63 E-value=49 Score=28.98 Aligned_cols=55 Identities=11% Similarity=-0.038 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCEEEEEee-ccC-CCCCCCCCCCCCC---HH-HHHHHHHHHHHcCCeEeec
Q psy2349 26 LKEILPILAYTGATSLLIEWE-DTL-PYSLGFDNTNPFR---ET-EIFIILAAAESNGLASIPL 83 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~e-d~~-p~~~~~~~~~~yT---~~-dir~iv~yA~~~gI~VIPe 83 (164)
.++.+..|+..|+|.+++.+. ..+ +..+ ....|+ +. =+.++|+.|+++||.|+=.
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~---~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD 135 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWALQATDG---DNPYLIGLTQLKILDEAINWAKKLGIYVLID 135 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhhhccCC---CCCCeecchHHHHHHHHHHHHHhcCeeEEEE
Confidence 489999999999999998664 121 1111 122333 22 4567799999999999866
No 274
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=47.57 E-value=24 Score=30.47 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+..||.+++++|++.|+++++-||
T Consensus 183 TG~~~s~~~~~~l~~~a~~~~~~ii 207 (409)
T PLN00143 183 CGSVYSYEHLNKIAETARKLGILVI 207 (409)
T ss_pred CCCccCHHHHHHHHHHHHHcCCeEE
Confidence 3569999999999999999998776
No 275
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=47.37 E-value=24 Score=31.63 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++++-||
T Consensus 295 G~v~~~~~l~~i~~~a~~~~~~ii 318 (517)
T PRK13355 295 GALYPREVLQQIVDIAREHQLIIF 318 (517)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEE
Confidence 568999999999999999998776
No 276
>PRK04302 triosephosphate isomerase; Provisional
Probab=47.24 E-value=1.3e+02 Score=23.88 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFV 93 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~ 93 (164)
.+..+|+.++++.|++.|+.+|.++..+--+..+
T Consensus 97 ~~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~~ 130 (223)
T PRK04302 97 RLTLADIEAVVERAKKLGLESVVCVNNPETSAAA 130 (223)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH
Confidence 4677889999999999999999877775444433
No 277
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=47.19 E-value=45 Score=28.98 Aligned_cols=85 Identities=24% Similarity=0.231 Sum_probs=61.5
Q ss_pred eEEEeCCCCCCCHHHH------HHHHHHHHhcCCCEEEEEeeccCCCCCC------------------------------
Q psy2349 11 LVHLDLKGAPPSLTYL------KEILPILAYTGATSLLIEWEDTLPYSLG------------------------------ 54 (164)
Q Consensus 11 g~~lD~~r~~~~~~~l------k~~i~~la~~k~N~l~l~~ed~~p~~~~------------------------------ 54 (164)
++.-.++|.-||.-.| .++.......|+..+.+-.+..| |.|.
T Consensus 120 ~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~-F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~e 198 (338)
T PLN02460 120 GLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVLTDEKY-FQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYY 198 (338)
T ss_pred ceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEEecCcCc-CCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHH
Confidence 5777777777764433 46666778889988876544332 2221
Q ss_pred ---CCC------CCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcC
Q psy2349 55 ---FDN------TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (164)
Q Consensus 55 ---~~~------~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~ 96 (164)
+.+ -..++.+++++++++|++.|++++=||-+.--++.+++.
T Consensus 199 Ar~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~ 249 (338)
T PLN02460 199 ARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGI 249 (338)
T ss_pred HHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc
Confidence 011 138899999999999999999999999998888887764
No 278
>PRK06225 aspartate aminotransferase; Provisional
Probab=47.15 E-value=23 Score=30.01 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+..+|.+++++|++.|+++|+-+|=
T Consensus 171 G~~~~~~~~~~i~~~a~~~~~~ii~ 195 (380)
T PRK06225 171 GSSYTEEEIKEFAEIARDNDAFLLH 195 (380)
T ss_pred CcCCCHHHHHHHHHHHHHCCcEEEE
Confidence 4588999999999999999997763
No 279
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=47.14 E-value=57 Score=27.49 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcC-CC-EEEEEeeccCCCCCC------------CCCCCCCCH----HHHHHHHHHHHHcCCeEeecc
Q psy2349 23 LTYLKEILPILAYTG-AT-SLLIEWEDTLPYSLG------------FDNTNPFRE----TEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 23 ~~~lk~~i~~la~~k-~N-~l~l~~ed~~p~~~~------------~~~~~~yT~----~dir~iv~yA~~~gI~VIPei 84 (164)
.+.+..++..++.-- ++ -+-||+++. .+..- ++ ...++- +..++++++|..+|+.|--|+
T Consensus 60 ~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d-~S~l~~eEni~~t~~v~~~a~~~gv~vE~El 137 (293)
T PRK07315 60 YKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFD-GSHLPVEENLKLAKEVVEKAHAKGISVEAEV 137 (293)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEc-CCCCCHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 566666666655431 11 345666654 32210 12 123433 457899999999999998888
Q ss_pred CCc
Q psy2349 85 PLY 87 (164)
Q Consensus 85 d~p 87 (164)
...
T Consensus 138 G~i 140 (293)
T PRK07315 138 GTI 140 (293)
T ss_pred Ccc
Confidence 654
No 280
>PRK14017 galactonate dehydratase; Provisional
Probab=47.12 E-value=1.1e+02 Score=26.45 Aligned_cols=69 Identities=20% Similarity=0.148 Sum_probs=46.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccC-----------------CCCCC--C----------CC----
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTL-----------------PYSLG--F----------DN---- 57 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~-----------------p~~~~--~----------~~---- 57 (164)
.+++|.- .-++++.-.++++.|+.+++.- +|+-+ |.... + ..
T Consensus 179 ~l~vDaN-~~w~~~~A~~~~~~l~~~~~~~----iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d 253 (382)
T PRK14017 179 GIGVDFH-GRVHKPMAKVLAKELEPYRPMF----IEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVD 253 (382)
T ss_pred eEEEECC-CCCCHHHHHHHHHhhcccCCCe----EECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCC
Confidence 5889984 5689999999999999877653 23322 21110 0 00
Q ss_pred ------CCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 58 ------TNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 58 ------~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
...=...+.+++.++|+++||.+.|--
T Consensus 254 ~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~ 286 (382)
T PRK14017 254 IIQPDLSHAGGITECRKIAAMAEAYDVALAPHC 286 (382)
T ss_pred eEecCccccCCHHHHHHHHHHHHHcCCeEeecC
Confidence 011236788999999999999999973
No 281
>PRK09265 aminotransferase AlaT; Validated
Probab=47.12 E-value=25 Score=30.11 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 182 G~~~~~~~~~~i~~~a~~~~~~ii 205 (404)
T PRK09265 182 GAVYSKELLEEIVEIARQHNLIIF 205 (404)
T ss_pred CcCCCHHHHHHHHHHHHHCCCEEE
Confidence 568999999999999999998776
No 282
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=47.05 E-value=21 Score=33.10 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
+=|.+|+..|+++|.+.+|-|||-=
T Consensus 45 P~SteEVa~IVklC~e~~vPVIPRG 69 (564)
T PRK11183 45 PGTLLELWRVLQACVAADKIIIMQA 69 (564)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 4499999999999999999999854
No 283
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=46.96 E-value=1.2e+02 Score=23.15 Aligned_cols=53 Identities=17% Similarity=-0.040 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe---eccCCcchHHHHhc
Q psy2349 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI---PLVPLYSDMDFVLK 95 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI---Peid~pGH~~~~l~ 95 (164)
+++.++..|++.+.+|.+. +.+.+.+++++++++|+.++ |...+|-.....++
T Consensus 69 ~~~~~~~aGad~i~~h~~~--------------~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~ 124 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAA--------------PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK 124 (202)
T ss_pred HHHHHHhcCCCEEEEEeeC--------------CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH
Confidence 3455566666666555432 23578999999999999998 67777777654443
No 284
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=46.93 E-value=50 Score=27.78 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=36.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
.+|||=+ .+++.+++-|+. |++++.+.-+. .||.- -.+.-|++++||+.+||.|=-|+-.-|
T Consensus 77 alHLDH~---~~~e~i~~ai~~----GftSVM~DgS~-l~~ee--------Ni~~T~~vv~~ah~~gv~VEaElG~i~ 138 (287)
T PF01116_consen 77 ALHLDHG---KDFEDIKRAIDA----GFTSVMIDGSA-LPFEE--------NIAITREVVEYAHAYGVSVEAELGHIG 138 (287)
T ss_dssp EEEEEEE----SHHHHHHHHHH----TSSEEEEE-TT-S-HHH--------HHHHHHHHHHHHHHTT-EEEEEESBSS
T ss_pred EeecccC---CCHHHHHHHHHh----CcccccccCCc-CCHHH--------HHHHHHHHHHhhhhhCCEEEEEeeeee
Confidence 4566633 234555555544 66666554332 23322 234679999999999999999886655
No 285
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=46.91 E-value=25 Score=29.47 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..|+.+++++|++.|+++|+-||
T Consensus 150 G~~~~~~~~~~l~~~a~~~~~~ii 173 (350)
T TIGR03537 150 GATAPRSYLKETIAMCREHGIILC 173 (350)
T ss_pred CcccCHHHHHHHHHHHHHcCcEEE
Confidence 568999999999999999998666
No 286
>PRK12999 pyruvate carboxylase; Reviewed
Probab=46.87 E-value=60 Score=32.64 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=50.4
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 13 HLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 13 ~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
.+|-+|..++++++.++.+.+...|++.+ .+.|+ .|.+++.++.+++...++.- . +| |..=+|.
T Consensus 680 ~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i--~ikDt---------~G~l~P~~~~~lv~~lk~~~-~-ip-i~~H~Hn 743 (1146)
T PRK12999 680 ILDPARAKYDLDYYVDLAKELEKAGAHIL--AIKDM---------AGLLKPAAAYELVSALKEEV-D-LP-IHLHTHD 743 (1146)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCEE--EECCc---------cCCCCHHHHHHHHHHHHHHc-C-Ce-EEEEeCC
Confidence 35778888999999999999999999854 56665 38999999999999998753 2 23 5555664
No 287
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=46.78 E-value=23 Score=29.96 Aligned_cols=24 Identities=4% Similarity=-0.177 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++|+-||
T Consensus 178 G~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 178 GAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred CccCCHHHHHHHHHHHHHcCEEEE
Confidence 568999999999999999998776
No 288
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.24 E-value=51 Score=27.30 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=23.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 56 DNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 56 ~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
....--|..+++++++.+++.+|.+|=
T Consensus 207 ~~~~eps~~~l~~l~~~ik~~~v~~If 233 (286)
T cd01019 207 DPEIDPGAKRLAKIRKEIKEKGATCVF 233 (286)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 345788999999999999999999863
No 289
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=46.16 E-value=52 Score=29.19 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCEEE--EEeeccCCCCCCCCCCCCCCHHH---HHHHHHHHHHcCCeEeecc---CCcchHH
Q psy2349 24 TYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETE---IFIILAAAESNGLASIPLV---PLYSDMD 91 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~--l~~ed~~p~~~~~~~~~~yT~~d---ir~iv~yA~~~gI~VIPei---d~pGH~~ 91 (164)
...++=|++|+.+|+|.++ |.|..-+|-. ..+...++- .+++++..+++||+.|.-+ |+|-...
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g----~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDG----FEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTS----SSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecc----cccccCHhHhhhhHHHHHHHHhhccceeeeeeeccccccee
Confidence 4568889999999999887 5566656642 124555444 5899999999999998865 6776654
No 290
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=45.83 E-value=38 Score=29.16 Aligned_cols=64 Identities=9% Similarity=-0.085 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCe-Eee--ccCCcchHH
Q psy2349 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLA-SIP--LVPLYSDMD 91 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~-VIP--eid~pGH~~ 91 (164)
.+.++.|+..|+|.+.+-++..-+-....- +..+|.+++.+.++.+++.|+. |-- -+-.||-+.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~ 169 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL-NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKL 169 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCH
Confidence 344555555666666554432111111111 2367999999999999999975 322 234466653
No 291
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=45.77 E-value=1.1e+02 Score=25.23 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 61 FRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 61 yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
++.+.+.++++-+.+.|+..|=--||-|-+
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~ 164 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSM 164 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 444455555544444555554444554444
No 292
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=45.76 E-value=88 Score=26.40 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHhcCCCE
Q psy2349 22 SLTYLKEILPILAYTGATS 40 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~ 40 (164)
+++.+.++++.+..+|++.
T Consensus 176 n~~ei~~~~~~~~~lGv~~ 194 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLGVDG 194 (318)
T ss_pred CHHHHHHHHHHHHHcCCCE
Confidence 3344444444444444443
No 293
>PRK12414 putative aminotransferase; Provisional
Probab=45.59 E-value=24 Score=30.06 Aligned_cols=24 Identities=4% Similarity=0.198 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++|+-||
T Consensus 176 G~~~s~~~~~~i~~~a~~~~~~ii 199 (384)
T PRK12414 176 ATVFSAADLARLAQLTRNTDIVIL 199 (384)
T ss_pred CcCCCHHHHHHHHHHHHHCCeEEE
Confidence 468999999999999999998776
No 294
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=45.56 E-value=28 Score=29.76 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+..+|.+++++|++.|+++++-||=
T Consensus 186 G~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 186 GADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 5689999999999999999998863
No 295
>PRK08912 hypothetical protein; Provisional
Probab=45.42 E-value=24 Score=29.97 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++++-||
T Consensus 173 G~~~s~~~~~~i~~~~~~~~~~ii 196 (387)
T PRK08912 173 GKVFPREELALLAEFCQRHDAVAI 196 (387)
T ss_pred CcccCHHHHHHHHHHHHHCCeEEE
Confidence 468999999999999999998776
No 296
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=45.20 E-value=32 Score=24.39 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCEEEEEeeccCCC-CCC-CCCCCCCCHHHHHHHHHHHHHcCCe
Q psy2349 27 KEILPILAYTGATSLLIEWEDTLPY-SLG-FDNTNPFRETEIFIILAAAESNGLA 79 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed~~p~-~~~-~~~~~~yT~~dir~iv~yA~~~gI~ 79 (164)
.+.++.|+.++.+.+.+.++...+- -.. +. ...+.+++.+.++.+++.|+.
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIP 142 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCC
Confidence 7788888888899888888765543 111 22 456789999999999999987
No 297
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=45.15 E-value=34 Score=30.03 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCC-hhhHHHHHHHHHhc-ccCC
Q psy2349 62 RETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNA-RSSLDLVFKMIGRM-RFVL 134 (164)
Q Consensus 62 T~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~-~~t~~~~~~l~~E~-~lf~ 134 (164)
.-.++.+.+.+++.+||.++.-+|..+-............+..+....-.+-..+ .+|-+.+.+++.+. ....
T Consensus 317 ~i~~~~~~l~~~Rs~gi~~~~i~Qs~~QL~~~Yg~~~~~~il~n~~~~~~~~~~~d~~ta~~iS~~lG~~Tv~~~ 391 (469)
T PF02534_consen 317 RIPNFEEALSTGRSYGIRFWLIVQSLAQLEEKYGKEGAKTILGNCCVKIIFGGSNDEETAKYISELLGKKTVKVE 391 (469)
T ss_pred cHHHHHHHHHHHhhCCcEEEEEEEcHHHHHHHhhhhhHHHHHhCCCeEEEEecCCcHHHHHHHHHHhCCeeEEEe
Confidence 3588999999999999999999999999887543222222222211122344556 89999999999998 5554
No 298
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=45.11 E-value=2.1e+02 Score=25.02 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCEEEEEeecc--C---CCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCcc
Q psy2349 27 KEILPILAYTGATSLLIEWEDT--L---PYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKE 98 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed~--~---p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~ 98 (164)
++.++.++..|+..+.+--.+. | |-... ..+ ..+-++=|+++.+.|+++||.+--.... .+| .+|.
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~-~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW--~~p~ 157 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVD-TGPKRDLVGELADAVRKRGLKFGLYHSL---FDW--FNPL 157 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccC-CCCCcchHHHHHHHHHHcCCeEEEEcCH---HHh--CCCc
Confidence 5677788889999988866542 2 21111 222 2347788999999999999999875331 222 3455
Q ss_pred chhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCC
Q psy2349 99 FAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVL 134 (164)
Q Consensus 99 ~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~ 134 (164)
|.... ....-+...+...+++...+.++ +|..
T Consensus 158 y~~~~----~~~~~~~~~~~~~~y~~~~~~Ql~ELit 190 (384)
T smart00812 158 YAGPT----SSDEDPDNWPRFQEFVDDWLPQLRELVT 190 (384)
T ss_pred ccccc----ccccccccchhHHHHHHHHHHHHHHHHh
Confidence 53320 01112234455677776666666 6663
No 299
>PRK07683 aminotransferase A; Validated
Probab=45.04 E-value=25 Score=29.97 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 175 G~~~s~~~~~~l~~~~~~~~~~ii 198 (387)
T PRK07683 175 GVTLSKEELQDIADVLKDKNIFVL 198 (387)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEE
Confidence 458999999999999999998776
No 300
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=45.02 E-value=29 Score=29.19 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 162 G~~~~~~~~~~i~~~a~~~~~~ii 185 (364)
T PRK07865 162 GRVLGVDHLRKVVAWARERGAVVA 185 (364)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEE
Confidence 568999999999999999998777
No 301
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.88 E-value=1.3e+02 Score=25.69 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=23.2
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHHHhcCCC
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPILAYTGAT 39 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N 39 (164)
-.+++|. +..++++.-.++++.|+.+++.
T Consensus 187 ~~l~vDa-N~~~~~~~A~~~~~~l~~~~i~ 215 (355)
T cd03321 187 VGLMVDY-NQSLTVPEAIERGQALDQEGLT 215 (355)
T ss_pred CEEEEeC-CCCcCHHHHHHHHHHHHcCCCC
Confidence 3578897 4567899999999999988764
No 302
>PRK05764 aspartate aminotransferase; Provisional
Probab=44.84 E-value=28 Score=29.49 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+..+|.+++++|++.|+++|+-||=
T Consensus 178 G~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 178 GAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEE
Confidence 5588999999999999999988863
No 303
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=44.78 E-value=1.2e+02 Score=24.56 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
..++.+.+.++++-+.+.|+..|=--||-|.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~ 166 (259)
T cd07939 134 SRADPDFLIEFAEVAQEAGADRLRFADTVGILD 166 (259)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 457889999999999999999999999988873
No 304
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=44.75 E-value=69 Score=28.05 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=43.9
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHH----Hhc---CCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPIL----AYT---GATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~l----a~~---k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
-.+|||=+..+.. +++++.++.. ... |++++.+.-+. .||+-. .+..|+++++|..+||.|=-
T Consensus 102 ValHLDHg~~~~~-~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~-lpfeEN--------I~~TrevVe~Ah~~GvsVEa 171 (357)
T TIGR01520 102 VVLHTDHCAKKLL-PWVDGLLEAGEKYFSAHGKPLFSSHMIDLSE-EPIEEN--------IEICVKYLKRMAKIKMWLEI 171 (357)
T ss_pred EEEECCCCCCcch-HHHHHHHHhhhhhhhhcCCCCCceEEeeCCC-CCHHHH--------HHHHHHHHHHHHHcCCEEEE
Confidence 3567776554433 6666666653 223 37766554432 444432 35679999999999999999
Q ss_pred ccCCcc
Q psy2349 83 LVPLYS 88 (164)
Q Consensus 83 eid~pG 88 (164)
|+=.-|
T Consensus 172 ELG~vg 177 (357)
T TIGR01520 172 EIGITG 177 (357)
T ss_pred EecccC
Confidence 875543
No 305
>PRK08175 aminotransferase; Validated
Probab=44.70 E-value=29 Score=29.68 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..|+.+++++|++.|+++||-||
T Consensus 178 G~~~~~~~~~~i~~~a~~~~i~ii 201 (395)
T PRK08175 178 AQCVELEFFEKVVALAKRYDVLVV 201 (395)
T ss_pred CCCCCHHHHHHHHHHHHHcCcEEE
Confidence 579999999999999999999887
No 306
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=44.35 E-value=57 Score=29.58 Aligned_cols=57 Identities=7% Similarity=0.021 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
-++++.|++.|+.-..-++......+.. ...++..+|.+.++++-+.|+++||.++=
T Consensus 166 ~~dl~~le~~I~~~g~~~i~~v~~tlt~------N~~GGqpvslenlr~V~~la~~~GIplhL 222 (467)
T TIGR02617 166 NFDLEGLERGIEEVGPNNVPYIVATITC------NSAGGQPVSLANLKAVYEIAKKYDIPVVM 222 (467)
T ss_pred CcCHHHHHHHHhhcCCCCceeeeeeEEE------ecCCCEEeCHHHHHHHHHHHHHcCCcEEE
Confidence 3677777777754211122222233332 13346699999999999999999988753
No 307
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=44.29 E-value=30 Score=28.85 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 136 G~~~s~~~~~~l~~~a~~~~~~iI 159 (332)
T PRK06425 136 GNLISRDSLLTISEICRKKGALLF 159 (332)
T ss_pred CCccCHHHHHHHHHHHHHcCCEEE
Confidence 569999999999999999998776
No 308
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=44.01 E-value=1e+02 Score=25.58 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
+++++.++++.+...|+..+ .+.|+. |..|+.++.+++...+++
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i--~l~DT~---------G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEI--SLGDTI---------GVATPAQVRRLLEAVLER 190 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEE--EECCCC---------CccCHHHHHHHHHHHHHH
Confidence 45555555555555555532 333432 555666666666665544
No 309
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.99 E-value=74 Score=26.24 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
+.+++.+++.++..++.+ +..+-+-|. ....+.++-+|+.++.|+++||.|.|= .|+-|.
T Consensus 7 kgl~~~~~~d~Le~~g~y-ID~lKfg~G----------t~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~ 66 (237)
T TIGR03849 7 KGLPPKFVEDYLKVCGDY-ITFVKFGWG----------TSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEI 66 (237)
T ss_pred CCCCHHHHHHHHHHhhhh-eeeEEecCc----------eEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHH
Confidence 446888899998888764 222222111 112445566777777777777777765 444333
No 310
>PLN02801 beta-amylase
Probab=43.95 E-value=2.6e+02 Score=25.75 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~--~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
+.+-..+.|+..+..|+..|+.++.+.. +.|. -.+.+-|.-+-.+++.+.+++.|+.|.|-+..
T Consensus 31 ~~l~~~~~l~~~L~~LK~~GVdGVmvDV-----WWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSF 96 (517)
T PLN02801 31 NVLEDEEGLEKQLKRLKEAGVDGVMVDV-----WWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSF 96 (517)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEEee-----eeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEe
Confidence 6678889999999999999999987542 1111 12356788888999999999999999986543
No 311
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=43.88 E-value=31 Score=29.48 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 182 G~~~~~~~~~~l~~~a~~~~~~ii 205 (401)
T TIGR01264 182 GSVFSRQHLEEILAVAERQCLPII 205 (401)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEE
Confidence 568999999999999999998776
No 312
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=43.72 E-value=69 Score=26.52 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEE------EEEeecc-C----------CCCCC-CCCC-CCCCHHHHHHHHHHHHHcCCeE
Q psy2349 20 PPSLTYLKEILPILAYTGATSL------LIEWEDT-L----------PYSLG-FDNT-NPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l------~l~~ed~-~----------p~~~~-~~~~-~~yT~~dir~iv~yA~~~gI~V 80 (164)
..+.+.+++.++....+++..+ .+.+.+. + -|..- ++++ -.+|-++..++++-|...|..|
T Consensus 56 Li~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 56 LIDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred cccHHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEE
Confidence 3556778888888888776532 1222211 1 01110 3332 2678899999999999999999
Q ss_pred eeccC
Q psy2349 81 IPLVP 85 (164)
Q Consensus 81 IPeid 85 (164)
.||+-
T Consensus 136 lsEvG 140 (258)
T COG1809 136 LSEVG 140 (258)
T ss_pred ehhhc
Confidence 99874
No 313
>PRK09936 hypothetical protein; Provisional
Probab=43.55 E-value=1.2e+02 Score=25.81 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=51.7
Q ss_pred CCCceeEEEeC-CCC-CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 6 TFKEVLVHLDL-KGA-PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 6 ~~~~Rg~~lD~-~r~-~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
.++.-|+.+=- .++ -.+.+.=.+++..++..|+++|.+.|+. |... .-..++.-+..+++.|.+.||+|+==
T Consensus 18 ~~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~---yG~~---~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 18 SQAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTR---YGDA---DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred hhccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeee---ccCC---CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 34444554444 233 5788888999999999999999999974 2111 11234778999999999999999843
No 314
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.45 E-value=42 Score=29.86 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=36.2
Q ss_pred HHHHHHHHhc--CCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCeEeecc--CCcchHH
Q psy2349 27 KEILPILAYT--GATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN--GLASIPLV--PLYSDMD 91 (164)
Q Consensus 27 k~~i~~la~~--k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~--gI~VIPei--d~pGH~~ 91 (164)
.++++.|+.. +.+.+++-++..-+-....- +-.||.++++++++.+++. ||.|--.| -.||-+.
T Consensus 245 ~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m-~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~ 314 (445)
T PRK14340 245 ESLVRTIAARPNICNHIHLPVQSGSSRMLRRM-NRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETE 314 (445)
T ss_pred HHHHHHHHhCCCCCCeEEECCCcCCHHHHHhc-CCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCH
Confidence 5555666554 35555443322110000011 2368999999999999999 88765443 3366553
No 315
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=43.39 E-value=28 Score=29.03 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..++.+++++|++.|+++|+-||
T Consensus 139 G~~~~~~~~~~l~~~a~~~~~~ii 162 (330)
T TIGR01140 139 GRLIPPETLLALAARLRARGGWLV 162 (330)
T ss_pred CCCCCHHHHHHHHHHhHhcCCEEE
Confidence 568999999999999999999776
No 316
>PRK07777 aminotransferase; Validated
Probab=43.37 E-value=28 Score=29.53 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+..+|.+++++|++.|+++|+-||=
T Consensus 173 G~~~~~~~~~~l~~~~~~~~~~li~ 197 (387)
T PRK07777 173 GTVLTAAELAAIAELAVEHDLLVIT 197 (387)
T ss_pred CccCCHHHHHHHHHHHHhcCcEEEE
Confidence 4588999999999999999998773
No 317
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=43.36 E-value=1.9e+02 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHh-cCCCEEEE
Q psy2349 21 PSLTYLKEILPILAY-TGATSLLI 43 (164)
Q Consensus 21 ~~~~~lk~~i~~la~-~k~N~l~l 43 (164)
...+.++++++.+.. .|++++.+
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v 44 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYV 44 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEE
Confidence 667889999999999 99999854
No 318
>PLN00175 aminotransferase family protein; Provisional
Probab=43.18 E-value=31 Score=29.90 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++++-||
T Consensus 201 G~~~s~~~l~~l~~~a~~~~~~ii 224 (413)
T PLN00175 201 GKMFTREELELIASLCKENDVLAF 224 (413)
T ss_pred CcCCCHHHHHHHHHHHHHcCcEEE
Confidence 568999999999999999998776
No 319
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.17 E-value=55 Score=26.58 Aligned_cols=109 Identities=11% Similarity=0.061 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeec----------------cCCCCCCCCCCCCCCHHHHH-----------------
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWED----------------TLPYSLGFDNTNPFRETEIF----------------- 67 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed----------------~~p~~~~~~~~~~yT~~dir----------------- 67 (164)
.+.+...++.+.|..-|+..+-+-|.. .|| ...+..+..+|.+|++
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~~~ 102 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELP-GMILGVGSIVDAATAALYIQLGANFIVTPLFNP 102 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCC-CeEEeeEeCcCHHHHHHHHHcCCCEEECCCCCH
Confidence 367788899999999999987666532 111 0013445577777765
Q ss_pred HHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc-ccCCCCCeeeccC
Q psy2349 68 IILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM-RFVLGTPISPLFC 143 (164)
Q Consensus 68 ~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf~~s~~iHiGg 143 (164)
+|+++|+++||-+||=+=||+-....+.+- + +. . -+-|++--. -+.++.+ ..||..+++-.||
T Consensus 103 ~v~~~~~~~~i~~iPG~~TpsEi~~A~~~G-a-~~--v-----KlFPA~~~G----~~~ikal~~p~p~i~~~ptGG 166 (222)
T PRK07114 103 DIAKVCNRRKVPYSPGCGSLSEIGYAEELG-C-EI--V-----KLFPGSVYG----PGFVKAIKGPMPWTKIMPTGG 166 (222)
T ss_pred HHHHHHHHcCCCEeCCCCCHHHHHHHHHCC-C-CE--E-----EECcccccC----HHHHHHHhccCCCCeEEeCCC
Confidence 688999999999999999999887665431 0 00 0 011222111 1355666 6777677777777
No 320
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=42.98 E-value=48 Score=28.60 Aligned_cols=33 Identities=6% Similarity=0.117 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEe---eccCCcchHH
Q psy2349 59 NPFRETEIFIILAAAESNGLASI---PLVPLYSDMD 91 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VI---Peid~pGH~~ 91 (164)
-..|.+++.+.++.|++.|+..| =-+-.||.+.
T Consensus 134 R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~ 169 (370)
T PRK06294 134 RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSL 169 (370)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCH
Confidence 36799999999999999998622 2344577663
No 321
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=42.97 E-value=57 Score=23.20 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
-+.+.+-++=..|...|++.. |..++.-|.... +.--..++++||+++++-..+--+.-=|+|+.--=-
T Consensus 18 ~~l~d~~~L~~~lt~~GF~~t-l~D~~G~~HeLgtntfgl~S~l~~~eV~~la~~lae~algk~p~V~V~t~~ 89 (96)
T PF11080_consen 18 AGLTDINELNNHLTRAGFSTT-LTDEDGNPHELGTNTFGLISALSAEEVAQLARGLAESALGKTPEVEVTTWE 89 (96)
T ss_pred CChHHHHHHHHHHHhcCceeE-EecCCCCEeecCCCeEEEEecCCHHHHHHHHHHHhhhhcCCCCceEEEEHH
Confidence 345667778888888888763 455555555433 111237799999999999988888888888765433
No 322
>PRK09148 aminotransferase; Validated
Probab=42.95 E-value=31 Score=29.74 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+..||.+++++|++.|+++|+-||
T Consensus 178 tG~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 178 TAYVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 3569999999999999999998776
No 323
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=42.79 E-value=62 Score=27.28 Aligned_cols=25 Identities=0% Similarity=-0.118 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 64 TEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
+.-|+++++|..+||.|=-|+=.-|
T Consensus 115 ~~T~~vv~~Ah~~gv~VEaElG~vg 139 (284)
T PRK09195 115 SLVKEVVDFCHRFDVSVEAELGRLG 139 (284)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeccc
Confidence 4578999999999999988874443
No 324
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=42.74 E-value=1.3e+02 Score=25.64 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=45.8
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCC-----------------CCCC--C----------CC---
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLP-----------------YSLG--F----------DN--- 57 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p-----------------~~~~--~----------~~--- 57 (164)
..+|+|. +..++++.-.++++.|+.+++. .+|+-+| .... . ..
T Consensus 189 ~~l~iDa-N~~~~~~~A~~~~~~l~~~~~~----~iEeP~~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~ 263 (365)
T cd03318 189 ASVRVDV-NQAWDESTAIRALPRLEAAGVE----LIEQPVPRENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAA 263 (365)
T ss_pred cEEEEEC-CCCCCHHHHHHHHHHHHhcCcc----eeeCCCCcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCC
Confidence 4689998 4557889999999999998864 3343222 1110 0 00
Q ss_pred -------CCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 58 -------TNPFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 58 -------~~~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
...-...+.+++.++|+++||.++|-
T Consensus 264 d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 264 DVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred CeEEEeecccCCHHHHHHHHHHHHHcCCceeec
Confidence 01224678889999999999999874
No 325
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=42.72 E-value=62 Score=27.73 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=41.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHH----HHHHHHHHHHcC
Q psy2349 12 VHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETE----IFIILAAAESNG 77 (164)
Q Consensus 12 ~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~d----ir~iv~yA~~~g 77 (164)
.-+|++..-. .+.+.+.++.+...|+.++.|..-|+|.+...-..+...++++ +++|.++|++++
T Consensus 136 ~~vd~~~~~W-~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~ 204 (315)
T TIGR01370 136 YDVKYWDPEW-KAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQN 204 (315)
T ss_pred eeEecccHHH-HHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHC
Confidence 4567765444 3456666888999999999988878775432211122455544 566667778653
No 326
>PRK07324 transaminase; Validated
Probab=42.71 E-value=34 Score=29.10 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+..+|++++++|++.|+++|+-||=
T Consensus 167 G~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 167 GALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4689999999999999999988774
No 327
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=42.68 E-value=39 Score=28.11 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
+++++..++..|++++.+-. +-.+|-.++.+.|+++||.+||.|.-
T Consensus 104 ~e~F~~~~~~aGvdGlIipD---------------LP~ee~~~~~~~~~~~gl~~I~lv~p 149 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPD---------------LPPEESEELREAAKKHGLDLIPLVAP 149 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETT---------------SBGGGHHHHHHHHHHTT-EEEEEEET
T ss_pred hHHHHHHHHHcCCCEEEEcC---------------CChHHHHHHHHHHHHcCCeEEEEECC
Confidence 45566666666666654421 12256678889999999999999965
No 328
>PLN03244 alpha-amylase; Provisional
Probab=42.65 E-value=60 Score=31.63 Aligned_cols=71 Identities=11% Similarity=0.012 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH----hcC----c-cchhhh----cCCCCCCcccCCChhhHHHHHH
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV----LKV----K-EFAKMR----QNFNDTRFICPNARSSLDLVFK 125 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~----l~~----~-~~~~l~----~~~~~~~~l~p~~~~t~~~~~~ 125 (164)
.+=|.+|+|.+|.-|-++||.||-.+- +.|+..- |.. + .|-... .....+..+|.+++++.+|+-+
T Consensus 436 RYGTPeDLK~LVD~aH~~GI~VILDvV-~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLs 514 (872)
T PLN03244 436 RYGTPDDFKRLVDEAHGLGLLVFLDIV-HSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLIS 514 (872)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEec-CccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHH
Confidence 344899999999999999999998874 6787421 110 1 111100 0011235788889999999888
Q ss_pred HHHhc
Q psy2349 126 MIGRM 130 (164)
Q Consensus 126 l~~E~ 130 (164)
.+.-.
T Consensus 515 na~yW 519 (872)
T PLN03244 515 NLNWW 519 (872)
T ss_pred HHHHH
Confidence 66544
No 329
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=42.64 E-value=16 Score=31.63 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHcCCeEee-------------ccCCcchHHHH
Q psy2349 73 AESNGLASIP-------------LVPLYSDMDFV 93 (164)
Q Consensus 73 A~~~gI~VIP-------------eid~pGH~~~~ 93 (164)
-++|||+|=+ -+|+|||++++
T Consensus 56 Ek~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 56 EKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred HhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 3678888754 58999999865
No 330
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=42.63 E-value=2e+02 Score=23.96 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeec---cC---------CCCCCCCCCCCCC------HHHHHHHHHHHHHcCCeEee
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWED---TL---------PYSLGFDNTNPFR------ETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed---~~---------p~~~~~~~~~~yT------~~dir~iv~yA~~~gI~VIP 82 (164)
.+.+..+..++..+.-|+|.+++-+-. .. |+...-....-+| =+.+..+|+.|.++||.+-
T Consensus 27 ~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~- 105 (289)
T PF13204_consen 27 LTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAA- 105 (289)
T ss_dssp --HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEE-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEE-
Confidence 345777889999999999999976521 11 1111100000111 1478899999999999984
Q ss_pred ccCCcch
Q psy2349 83 LVPLYSD 89 (164)
Q Consensus 83 eid~pGH 89 (164)
.|-+-|+
T Consensus 106 lv~~wg~ 112 (289)
T PF13204_consen 106 LVPFWGC 112 (289)
T ss_dssp EESS-HH
T ss_pred EEEEECC
Confidence 3334333
No 331
>PRK07568 aspartate aminotransferase; Provisional
Probab=42.62 E-value=31 Score=29.22 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 176 G~~~~~~~~~~i~~~~~~~~~~ii 199 (397)
T PRK07568 176 GVVYTKEELEMLAEIAKKHDLFLI 199 (397)
T ss_pred CccCCHHHHHHHHHHHHHCCcEEE
Confidence 568999999999999999998876
No 332
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=42.54 E-value=34 Score=29.39 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 183 G~~~~~~~~~~i~~~a~~~~~~ii 206 (403)
T TIGR01265 183 GSVFSRDHLQKIAEVARKLGIPII 206 (403)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEE
Confidence 568999999999999999998776
No 333
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=42.50 E-value=44 Score=29.64 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHcCCe-Ee--eccCCcchHH
Q psy2349 60 PFRETEIFIILAAAESNGLA-SI--PLVPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~-VI--Peid~pGH~~ 91 (164)
..|.+++.+.++.+++.|+. |- =-+-.||++.
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~ 217 (453)
T PRK09249 183 IQPFEFTFALVEAARELGFTSINIDLIYGLPKQTP 217 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCH
Confidence 57999999999999999983 32 2345688874
No 334
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=42.42 E-value=46 Score=24.69 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHHcC
Q psy2349 62 RETEIFIILAAAESNG 77 (164)
Q Consensus 62 T~~dir~iv~yA~~~g 77 (164)
|-+++.+.++.+++.|
T Consensus 134 ~~~~~~~~i~~~~~~g 149 (216)
T smart00729 134 TVEDVLEAVEKLREAG 149 (216)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 4577777777777777
No 335
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=42.30 E-value=1.3e+02 Score=23.94 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
++.+++.+..+...|+. +.+.+++.+. ..++.+++.++++.+.+.|+..|=-.||-|.+
T Consensus 114 ~~~~~~~i~~a~~~G~~-v~~~~~~~~~--------~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~ 172 (265)
T cd03174 114 LENAEEAIEAAKEAGLE-VEGSLEDAFG--------CKTDPEYVLEVAKALEEAGADEISLKDTVGLA 172 (265)
T ss_pred HHHHHHHHHHHHHCCCe-EEEEEEeecC--------CCCCHHHHHHHHHHHHHcCCCEEEechhcCCc
Confidence 45566666667777764 4555555431 15899999999999999999998888998876
No 336
>PRK08354 putative aminotransferase; Provisional
Probab=42.30 E-value=31 Score=28.45 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+..+|.+++++|++.|+++|+-||
T Consensus 130 TG~~~~~~~l~~l~~~a~~~~~~li 154 (311)
T PRK08354 130 DGKFYNFKELKPLLDAVEDRNALLI 154 (311)
T ss_pred CCCccCHHHHHHHHHHhhhcCcEEE
Confidence 3569999999999999999998776
No 337
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=42.29 E-value=70 Score=27.37 Aligned_cols=70 Identities=4% Similarity=-0.006 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC-CEEEEEeeccCCC-----------CCCCCCCCCCC----HHHHHHHHHHHHHcCCeEee
Q psy2349 19 APPSLTYLKEILPILAYTGA-TSLLIEWEDTLPY-----------SLGFDNTNPFR----ETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~-N~l~l~~ed~~p~-----------~~~~~~~~~yT----~~dir~iv~yA~~~gI~VIP 82 (164)
++...+.+..++..++..-- --+-||+++..-+ ++-+-.+..|+ .+.-|++++||..+||.|=-
T Consensus 54 ~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEa 133 (307)
T PRK05835 54 KYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEA 133 (307)
T ss_pred hhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 44566777777777766442 3566777664322 22111223343 34679999999999999998
Q ss_pred ccCCcc
Q psy2349 83 LVPLYS 88 (164)
Q Consensus 83 eid~pG 88 (164)
|+=.-|
T Consensus 134 ElG~vg 139 (307)
T PRK05835 134 ELGRLM 139 (307)
T ss_pred EecccC
Confidence 875543
No 338
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=42.19 E-value=31 Score=29.72 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 191 G~~~s~~~~~~l~~~a~~~~~~ii 214 (412)
T PTZ00433 191 GSNFSRKHVEDIIRLCEELRLPLI 214 (412)
T ss_pred CcccCHHHHHHHHHHHHHcCCeEE
Confidence 468999999999999999998776
No 339
>KOG1232|consensus
Probab=42.19 E-value=17 Score=32.39 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccC--------CcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc-
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVP--------LYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM- 130 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid--------~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~- 130 (164)
.=|-+|+..|++||.++.+.|||.=- .|=|-+-+|..-..-+.+....-.+.+--..--.++=+.+-+.|.
T Consensus 96 Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g 175 (511)
T KOG1232|consen 96 PKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKG 175 (511)
T ss_pred CCCHHHHHHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcC
Confidence 44889999999999999999999632 222333343321111111111112222221122234445677888
Q ss_pred ccCC----CCCeeeccC
Q psy2349 131 RFVL----GTPISPLFC 143 (164)
Q Consensus 131 ~lf~----~s~~iHiGg 143 (164)
-+|| .-.--||||
T Consensus 176 ~m~PlDLgAKgsCqiGG 192 (511)
T KOG1232|consen 176 YMFPLDLGAKGSCQIGG 192 (511)
T ss_pred ceeeecCCCcccceecc
Confidence 8888 123468888
No 340
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=42.16 E-value=98 Score=25.36 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCEEEEEeeccCCCCCC--------CCCC--------CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2349 29 ILPILAYTGATSLLIEWEDTLPYSLG--------FDNT--------NPFRETEIFIILAAAESNGLASIPLVPLYSDMDF 92 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~~ed~~p~~~~--------~~~~--------~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~ 92 (164)
..+.++..|+..+.+..|++ |+... .... ..=+...|+.+++. -..|| ++|-|++.-.+..
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg-~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~-Ga~gI-ivP~v~taeea~~ 101 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHA-PNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDI-GFYNF-LIPFVESAEEAER 101 (249)
T ss_pred HHHHHHhcCCCEEEEecccC-CCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcC-CCCEE-EecCcCCHHHHHH
Confidence 45667778888888877774 22211 0000 01144555655553 24445 7888888888887
Q ss_pred HhcC
Q psy2349 93 VLKV 96 (164)
Q Consensus 93 ~l~~ 96 (164)
+.+.
T Consensus 102 ~v~a 105 (249)
T TIGR03239 102 AVAA 105 (249)
T ss_pred HHHH
Confidence 7643
No 341
>PRK06290 aspartate aminotransferase; Provisional
Probab=42.13 E-value=31 Score=29.96 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++|+-||
T Consensus 193 G~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 193 GAVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEE
Confidence 569999999999999999998766
No 342
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=42.12 E-value=35 Score=29.81 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
...+.++++.++++|+.++--+|+++-............+..+-...-.+...++++-+.+.+++.+.
T Consensus 285 ~~~l~~~l~~~R~~G~~~~~~~Qs~~Ql~~~yg~~~a~~i~~n~~~~i~~~~~d~~ta~~~s~~lG~~ 352 (410)
T cd01127 285 LPDLVDALAEGRKFGGCFVLGIQSYAQLEDIYGKKGAQTLASNLRTRIVLAAPDAKTAEHASDSLGEQ 352 (410)
T ss_pred chHHHHHHHHHhcCCCEEEEEEcCHHHHHHHHCHHHHHHHHhhcCcEEEEeCCCHHHHHHHHHhcCCE
Confidence 46799999999999999999999999887665432222333322222245567889999999998876
No 343
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.00 E-value=40 Score=29.74 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHc--CCeEeec--cCCcchHH
Q psy2349 60 PFRETEIFIILAAAESN--GLASIPL--VPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~--gI~VIPe--id~pGH~~ 91 (164)
.||.+++.++++.+++. ||.|-.. +-.||-+.
T Consensus 280 ~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ 315 (444)
T PRK14325 280 GHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETD 315 (444)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCH
Confidence 58999999999999998 6666554 34567664
No 344
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=42.00 E-value=63 Score=30.76 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcC
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~ 96 (164)
..++.+++++++++|.+.|++++=||-+.-.++.+++.
T Consensus 142 ~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ 179 (695)
T PRK13802 142 AALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAA 179 (695)
T ss_pred hhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhC
Confidence 47889999999999999999999999999888877653
No 345
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=41.97 E-value=1.4e+02 Score=22.11 Aligned_cols=81 Identities=7% Similarity=-0.028 Sum_probs=48.5
Q ss_pred CCCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCe
Q psy2349 6 TFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLA 79 (164)
Q Consensus 6 ~~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~------~~~~~~yT~~dir~iv~yA~~~gI~ 79 (164)
.+....+++|.+-...+.+....+-.....+|+....+.+++.|..... ......-+..-...+.++|+++|+.
T Consensus 29 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~ 108 (185)
T cd01993 29 GFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGAD 108 (185)
T ss_pred CeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCC
Confidence 4567789999864444445454444455668887766777654311110 1111233455556778899999998
Q ss_pred EeeccCCcchH
Q psy2349 80 SIPLVPLYSDM 90 (164)
Q Consensus 80 VIPeid~pGH~ 90 (164)
+| +-||.
T Consensus 109 ~l----~~Gh~ 115 (185)
T cd01993 109 KL----ATGHN 115 (185)
T ss_pred EE----EEcCC
Confidence 86 45776
No 346
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=41.90 E-value=1.4e+02 Score=23.31 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK 95 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~ 95 (164)
.++.++++++++++...|+.+++++.+.--+..+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~ 139 (217)
T cd00331 104 ALDDEQLKELYELARELGMEVLVEVHDEEELERALA 139 (217)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence 355689999999999999999999975554444443
No 347
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=41.80 E-value=48 Score=30.38 Aligned_cols=76 Identities=12% Similarity=0.021 Sum_probs=49.9
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec--cCCc
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL--VPLY 87 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPe--id~p 87 (164)
.|+.+-+.-...+ .+.++.|..+|+|.+.+-++...+-....- +-..|.+|+.+-++.+++.|+.|.-. +.+|
T Consensus 193 vgitiEtRPD~i~----~e~L~~L~~~G~~rVslGVQS~~d~VL~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM~GLP 267 (522)
T TIGR01211 193 VGLTIETRPDYCR----EEHIDRMLKLGATRVELGVQTIYNDILERT-KRGHTVRDVVEATRLLRDAGLKVVYHIMPGLP 267 (522)
T ss_pred EEEEEEEcCCcCC----HHHHHHHHHcCCCEEEEECccCCHHHHHHh-CCCCCHHHHHHHHHHHHHcCCeEEEEeecCCC
Confidence 3444444333334 577889999999998887765332222222 23589999999999999999976644 3446
Q ss_pred chH
Q psy2349 88 SDM 90 (164)
Q Consensus 88 GH~ 90 (164)
|-+
T Consensus 268 gqt 270 (522)
T TIGR01211 268 GSS 270 (522)
T ss_pred CCC
Confidence 644
No 348
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=41.74 E-value=1.8e+02 Score=24.09 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=44.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES 75 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~ 75 (164)
-|++|.+...=..+++..+......+|++++.+|--.+..-.. -.+...++.+|++++++-.++
T Consensus 198 pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~-~D~~~sl~p~~l~~l~~~i~~ 261 (266)
T PRK13398 198 PIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPEKAL-SDARQTLNFEEMKELVDELKP 261 (266)
T ss_pred CEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCccccC-CchhhcCCHHHHHHHHHHHHH
Confidence 4888987655555677777777788999988877532211111 234568999999999987765
No 349
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=41.60 E-value=76 Score=26.62 Aligned_cols=26 Identities=4% Similarity=0.110 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEE
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLI 43 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l 43 (164)
...++.+.++++++.++.+|+..+.+
T Consensus 40 ~~~ls~eei~~~i~~~~~~gv~~V~l 65 (334)
T TIGR02666 40 EELLTFEEIERLVRAFVGLGVRKVRL 65 (334)
T ss_pred cCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 45789999999999999999887755
No 350
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=41.50 E-value=34 Score=28.82 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 156 G~~~~~~~~~~i~~~a~~~~~~ii 179 (357)
T TIGR03539 156 GRVLSVDELRAIVAWARERGAVVA 179 (357)
T ss_pred CccCCHHHHHHHHHHHHHcCeEEE
Confidence 568999999999999999999888
No 351
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=41.43 E-value=31 Score=32.17 Aligned_cols=68 Identities=7% Similarity=0.037 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
-.++.+.+.+++.|||+++.-+|..+-....-.......+..+-...-.+.+.+.+|-+.+.+++.+.
T Consensus 421 ip~l~~~ls~~RgyGi~~~~I~QsisQL~~~YG~~~a~tIl~Nc~~~i~~~~~d~~TAe~iS~~LG~~ 488 (606)
T PRK13897 421 MEQFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQLVGNK 488 (606)
T ss_pred hHHHHHHHHHhCcCCCEEEEEEEcHHHHHHHhCHhHHHHHHhcCceEEEEecCCHHHHHHHHHHhCCe
Confidence 46899999999999999999999999987654322222222222222356778889999999999876
No 352
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=41.18 E-value=32 Score=28.23 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
++.|+.+++++|++.|+++|+-||=
T Consensus 140 g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 140 GTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred ccccCHHHHHHHHHHHHHcCCeEee
Confidence 3577999999999999999987764
No 353
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=40.98 E-value=69 Score=24.33 Aligned_cols=78 Identities=8% Similarity=-0.009 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhcccCCCCCeeeccC
Q psy2349 64 TEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRMRFVLGTPISPLFC 143 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~~lf~~s~~iHiGg 143 (164)
.++.+++++.+++|+.+.--=+.+..+...++......+...-..........|.. +++..+++++.+-| +..++||=
T Consensus 108 ~g~~~~l~~L~~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~-~~~~~~~~~~~~~~-~~~~~IgD 185 (203)
T TIGR02252 108 PDAIKLLKDLRERGLILGVISNFDSRLRGLLEALGLLEYFDFVVTSYEVGAEKPDP-KIFQEALERAGISP-EEALHIGD 185 (203)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHCCcHHhcceEEeecccCCCCCCH-HHHHHHHHHcCCCh-hHEEEECC
Confidence 57788888888888876655566555554554322222211101111223334443 55666777775556 78888885
No 354
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.95 E-value=2e+02 Score=23.83 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEE-e-eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIE-W-EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK 95 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~-~-ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~ 95 (164)
-|.+.+.+.-..+...|++.+.-- | --|.|++ +. -+-.+.++.|.+++++.||.++=++-.+.|.+.+..
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~s--f~---G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e 97 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAAS--FQ---GLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD 97 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcc--cC---CCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh
Confidence 455666666677777887765421 1 1122222 22 234579999999999999999999999999987754
No 355
>KOG4730|consensus
Probab=40.71 E-value=28 Score=31.65 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
..=|.+|+++||++|++.|..|.+-= .||+
T Consensus 55 yP~teaeL~~lVa~A~~a~~kirvVg--~gHS 84 (518)
T KOG4730|consen 55 YPKTEAELVELVAAATEAGKKIRVVG--SGHS 84 (518)
T ss_pred CCCCHHHHHHHHHHHHHcCceEEEec--ccCC
Confidence 35699999999999999999888765 8998
No 356
>KOG0257|consensus
Probab=40.68 E-value=29 Score=30.94 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+..+|++|+.+|.+.|+++|+-||=
T Consensus 186 GkvfsReeLe~ia~l~~k~~~lvis 210 (420)
T KOG0257|consen 186 GKVFSREELERIAELCKKHGLLVIS 210 (420)
T ss_pred CcccCHHHHHHHHHHHHHCCEEEEE
Confidence 4599999999999999999976663
No 357
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=40.66 E-value=2e+02 Score=23.36 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeecc
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLV 84 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~---gI~VIPei 84 (164)
-...+.++++++.+...|++++.+- |.......+|.+|-+++++.+.+. .+.||--+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~--------GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv 73 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVL--------GTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGV 73 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEC--------CCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEec
Confidence 3566789999999999999997431 101223366777777777766654 24444444
No 358
>PRK06107 aspartate aminotransferase; Provisional
Probab=40.63 E-value=31 Score=29.61 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHc-CCeEee
Q psy2349 58 TNPFRETEIFIILAAAESN-GLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~-gI~VIP 82 (164)
+..||.+++++|++.|+++ |+-||=
T Consensus 180 G~~~s~~~~~~l~~~a~~~~~~~iI~ 205 (402)
T PRK06107 180 GAVYSRAELRALADVLLRHPHVLVLT 205 (402)
T ss_pred CcCcCHHHHHHHHHHHHHcCCeEEEE
Confidence 5689999999999999997 988763
No 359
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function.
Probab=40.49 E-value=63 Score=23.56 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHh-cCCCEEE----EEeeccCCCCCC-------CCCCCCCCHHHHHHHHHH----HHHcCCeEe
Q psy2349 22 SLTYLKEILPILAY-TGATSLL----IEWEDTLPYSLG-------FDNTNPFRETEIFIILAA----AESNGLASI 81 (164)
Q Consensus 22 ~~~~lk~~i~~la~-~k~N~l~----l~~ed~~p~~~~-------~~~~~~yT~~dir~iv~y----A~~~gI~VI 81 (164)
.+++|++.|..|.. ... .+. |.-+|.-+-.+. +-..+++|.+|.+.|-+. .+.-||.|+
T Consensus 3 ~P~~l~~~m~~~~g~~d~-kli~~K~L~~tDv~~~qsRLsmP~~qi~~~dFLt~eE~~~i~~~~~~~~~~~Gv~V~ 77 (114)
T PF03754_consen 3 LPEWLKNVMREMNGAEDP-KLIIEKTLFKTDVDPHQSRLSMPFNQIIDNDFLTEEEKRIIKEEKKNNDKKKGVEVI 77 (114)
T ss_pred chHHHHHHHHHhcCCCCC-eEEEeeeecccCCCCCCceeeccHHHhcccccCCHHHHHHHHHhhccCcccCCceEE
Confidence 35777777777766 333 222 333443333222 333679999999999222 234455555
No 360
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=40.47 E-value=1.3e+02 Score=24.87 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
+..+..++.....|+..+++-..-+ ..+.+++.+++|+++|++|..-+
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDALN-------------DVRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCC-------------hHHHHHHHHHHHHHCCCeEEEEE
Confidence 4456666666666666555432110 13556666666666666665544
No 361
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=40.44 E-value=1.6e+02 Score=25.36 Aligned_cols=50 Identities=10% Similarity=-0.027 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-EEeeccCCCCCC--C-CCCCCCCHHHHHH
Q psy2349 19 APPSLTYLKEILPILAYTGATSLL-IEWEDTLPYSLG--F-DNTNPFRETEIFI 68 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~-l~~ed~~p~~~~--~-~~~~~yT~~dir~ 68 (164)
....++...++..+....|+..+. +|++|++.-.+. . .+...+|.+++.+
T Consensus 53 g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~ 106 (332)
T PF07745_consen 53 GYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAK 106 (332)
T ss_dssp TTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHH
Confidence 678899999999999999998775 899998877666 2 2234557777663
No 362
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=40.41 E-value=32 Score=27.34 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 58 TNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
..++|.+|++++.+|+.-.++.|+=
T Consensus 140 ~~YLT~eEl~el~e~i~~~~i~VL~ 164 (188)
T PF09711_consen 140 RSYLTEEELQELYEYIKYNKIKVLF 164 (188)
T ss_dssp GGGS-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCHHHHHHHHHHHHHhCCeEEE
Confidence 5699999999999999999999873
No 363
>PRK07094 biotin synthase; Provisional
Probab=40.40 E-value=50 Score=27.54 Aligned_cols=31 Identities=10% Similarity=-0.093 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeecc--CCcchH
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLV--PLYSDM 90 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPei--d~pGH~ 90 (164)
..|.+++.+.++.+++.|+.|-.-+ -.||.+
T Consensus 161 ~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 161 GMSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred CCCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 5789999999999999999876543 234544
No 364
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=40.40 E-value=42 Score=23.38 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcC--CeEeeccCCcchHH
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNG--LASIPLVPLYSDMD 91 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~g--I~VIPeid~pGH~~ 91 (164)
....+.+.+.+.|+.++..+.....+.+...-|+- ++..+++.++++++++++ +.|. |.|=|...
T Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll-------~~~~~~l~~~i~~~~~~~~~~~i~--i~TNg~~~ 92 (119)
T PF13394_consen 26 GEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLL-------YLNPEDLIELIEYLKERGPEIKIR--IETNGTLP 92 (119)
T ss_dssp GGS--HHHHHHHHHHHHHTT----EEEEESSSGGG-------STTHHHHHHHHCTSTT-----EEE--EEE-STTH
T ss_pred CCcccHhHHHHHHHHHHhcCCceEEEEEECCCCcc-------ccCHHHHHHHHHHHHhhCCCceEE--EEeCCeec
Confidence 45678899999999988888876666665422221 245789999999999998 5553 55555553
No 365
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=40.39 E-value=42 Score=29.75 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEee---ccCCcchHH
Q psy2349 60 PFRETEIFIILAAAESNGLASIP---LVPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIP---eid~pGH~~ 91 (164)
..|.+++.+.++.+++.|++.|. -+-.||.+.
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~ 217 (455)
T TIGR00538 183 IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTK 217 (455)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCH
Confidence 47899999999999999986221 224577764
No 366
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=40.37 E-value=2.2e+02 Score=24.12 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=66.9
Q ss_pred eEEEeC-CCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHc----CCeEeecc
Q psy2349 11 LVHLDL-KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESN----GLASIPLV 84 (164)
Q Consensus 11 g~~lD~-~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~-~~~~~~yT~~dir~iv~yA~~~----gI~VIPei 84 (164)
-|..|+ .|---.++ +.+.+..+...|+.+++||.. .+|-... +..+..++.+|..+=++.|++- .+-||--.
T Consensus 79 Pv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq-~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART 156 (294)
T TIGR02319 79 PVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQ-VNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART 156 (294)
T ss_pred CEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECC-CCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 377888 44445555 789999999999999988765 3565443 4445567877776666655542 46777777
Q ss_pred CCcchH---HHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 85 PLYSDM---DFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 85 d~pGH~---~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
|+.+.. +++-+...|.+-.. +.+-+-.+.+.+-++.+.+++
T Consensus 157 Da~~~~g~deaI~Ra~aY~eAGA-----D~ifi~~~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 157 DARESFGLDEAIRRSREYVAAGA-----DCIFLEAMLDVEEMKRVRDEI 200 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhCC-----CEEEecCCCCHHHHHHHHHhc
Confidence 875322 12222222332211 222222345556666676666
No 367
>PRK07550 hypothetical protein; Provisional
Probab=40.31 E-value=36 Score=28.90 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+-||
T Consensus 177 G~~~~~~~~~~i~~~~~~~~~~iI 200 (386)
T PRK07550 177 GVVYPPELLHELYDLARRHGIALI 200 (386)
T ss_pred CcccCHHHHHHHHHHHHHcCeEEE
Confidence 457999999999999999998776
No 368
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=40.26 E-value=34 Score=23.74 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCeEeeccC
Q psy2349 63 ETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid 85 (164)
..+.+.|.++|+++||.+.|---
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 56899999999999999999874
No 369
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=40.20 E-value=2.3e+02 Score=24.09 Aligned_cols=114 Identities=10% Similarity=-0.084 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeccC--CCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH--h
Q psy2349 19 APPSLTYLKEILPILAYTGATSLLIEWEDTL--PYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV--L 94 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~--p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~--l 94 (164)
...+-+.++++++.+...++..=.+.++..+ .+..-.-++..|-.-..+++++.-+++|++|++-|+ |+-...- -
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~-P~v~~~~~~~ 97 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILD-PAISANEPTG 97 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEe-CccccCcCCC
Confidence 3457889999999999999853333333211 010001112234322338899999999999998875 3221100 0
Q ss_pred cCccchhhh-----------------cCCCCCCcccCCChhhHHHHHHHHHhc-ccC
Q psy2349 95 KVKEFAKMR-----------------QNFNDTRFICPNARSSLDLVFKMIGRM-RFV 133 (164)
Q Consensus 95 ~~~~~~~l~-----------------~~~~~~~~l~p~~~~t~~~~~~l~~E~-~lf 133 (164)
.++.|.+.. ..+.....+|-+||++.+.-.+.++++ .-.
T Consensus 98 ~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~ 154 (339)
T cd06602 98 SYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQV 154 (339)
T ss_pred CCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcC
Confidence 011111100 001123568999999999988888886 543
No 370
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=39.98 E-value=1.4e+02 Score=24.36 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
++.-|..|+.+|.+++-+ ||..| -=+.+|++.+.+.|+++|+.+=|
T Consensus 137 vetAiaml~dmG~~SiKf-----fPm~G------l~~leE~~avAkA~a~~g~~lEP 182 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKF-----FPMGG------LKHLEELKAVAKACARNGFTLEP 182 (218)
T ss_dssp HHHHHHHHHHTT--EEEE--------TT------TTTHHHHHHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHHHcCCCeeeE-----eecCC------cccHHHHHHHHHHHHHcCceeCC
Confidence 466788899999998744 56654 45789999999999999999855
No 371
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=39.80 E-value=98 Score=25.88 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
+++++.++++.+...|++. +.+.|+ -|..++.++.++++..++.
T Consensus 153 ~~~~~~~~~~~~~~~G~d~--i~l~DT---------~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 153 PPEAVADVAERLFALGCYE--ISLGDT---------IGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred CHHHHHHHHHHHHHcCCcE--EEeccc---------cCccCHHHHHHHHHHHHHh
Confidence 5666666666666666664 344444 2666777777777776654
No 372
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=39.77 E-value=2.1e+02 Score=23.51 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHhc-CCCEEEE
Q psy2349 21 PSLTYLKEILPILAYT-GATSLLI 43 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~-k~N~l~l 43 (164)
...+.++++++.+... |++++.+
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~ 41 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYV 41 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 6678899999999999 9999754
No 373
>PLN02428 lipoic acid synthase
Probab=39.76 E-value=1.9e+02 Score=25.15 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=54.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeecc-CCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe---eccCC
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT-LPYSLGFDNTNPFRETEIFIILAAAESNGLASI---PLVPL 86 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~-~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI---Peid~ 86 (164)
|+|+-+ + -+.+.+.++++.|..++++.+.+ .+- -|-..+++-..++++++..++-++|.+.|..-| |.+-+
T Consensus 252 g~MvGL-G--ET~Edv~e~l~~Lrelgvd~vti--gqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrs 326 (349)
T PLN02428 252 SIMLGL-G--ETDEEVVQTMEDLRAAGVDVVTF--GQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRS 326 (349)
T ss_pred eEEEec-C--CCHHHHHHHHHHHHHcCCCEEee--ccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccc
Confidence 777776 3 78899999999999999987643 111 132222444579999999999999999988655 55655
Q ss_pred cchHH
Q psy2349 87 YSDMD 91 (164)
Q Consensus 87 pGH~~ 91 (164)
-=|++
T Consensus 327 sy~a~ 331 (349)
T PLN02428 327 SYKAG 331 (349)
T ss_pred hhhhH
Confidence 55554
No 374
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=39.72 E-value=38 Score=28.45 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..++.+++++|++.|+++|+-||
T Consensus 156 G~~~~~~~~~~i~~~a~~~~~~ii 179 (356)
T PRK08056 156 GLLPERQLLQAIAERCKSLNIALI 179 (356)
T ss_pred CCCCCHHHHHHHHHHHHhcCCEEE
Confidence 458999999999999999998877
No 375
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=39.71 E-value=1.5e+02 Score=21.65 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHc--CCeEeeccCCcchH
Q psy2349 61 FRETEIFIILAAAESN--GLASIPLVPLYSDM 90 (164)
Q Consensus 61 yT~~dir~iv~yA~~~--gI~VIPeid~pGH~ 90 (164)
..+.+++.+++.+++. .+-||-++|=.|-.
T Consensus 52 ~~Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~ 83 (140)
T cd03770 52 FDRPGFNRMIEDIEAGKIDIVIVKDMSRLGRN 83 (140)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccchhccC
Confidence 4567777777777776 44567777776665
No 376
>PRK08185 hypothetical protein; Provisional
Probab=39.65 E-value=84 Score=26.47 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 64 TEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
+..++++++|..+||.|=-|+ ||.+
T Consensus 109 ~~t~~vv~~a~~~gv~vE~El---G~vg 133 (283)
T PRK08185 109 ALTKEVVELAHKVGVSVEGEL---GTIG 133 (283)
T ss_pred HHHHHHHHHHHHcCCeEEEEE---eecc
Confidence 457899999999999996666 7764
No 377
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.60 E-value=52 Score=29.97 Aligned_cols=32 Identities=9% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHc--CCeEee--ccCCcchHH
Q psy2349 60 PFRETEIFIILAAAESN--GLASIP--LVPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~--gI~VIP--eid~pGH~~ 91 (164)
.||.+++.++++.+++. +|.+-- -+-.||-+.
T Consensus 343 ~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPgET~ 378 (509)
T PRK14327 343 KYTRESYLELVRKIKEAIPNVALTTDIIVGFPNETD 378 (509)
T ss_pred CCCHHHHHHHHHHHHHhCCCcEEeeeEEEeCCCCCH
Confidence 69999999999999998 444321 123366653
No 378
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=39.59 E-value=40 Score=28.09 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++|+.||
T Consensus 138 G~~~s~~~l~~l~~~~~~~~~~iI 161 (330)
T PRK05664 138 GRRFDPARLLAWHARLAARGGWLV 161 (330)
T ss_pred CCccCHHHHHHHHHHHHhcCCEEE
Confidence 569999999999999999999777
No 379
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.59 E-value=1.6e+02 Score=23.92 Aligned_cols=32 Identities=16% Similarity=0.028 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
..+|.+++.++++-+.+.|+..|=--||.|.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~ 167 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVYVTDSAGAM 167 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 34566777777777667777776666776666
No 380
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=39.56 E-value=1.6e+02 Score=25.45 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=43.6
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 14 lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
-|.+| .+++++.+++..+...|++.+ .+-|+. |..+++++.++++..+++- . +| |..=+|-
T Consensus 133 eda~r--~~~~~l~~~~~~~~~~g~~~i--~l~DT~---------G~~~P~~v~~li~~l~~~~-~-~~-l~~H~Hn 193 (363)
T TIGR02090 133 EDATR--TDIDFLIKVFKRAEEAGADRI--NIADTV---------GVLTPQKMEELIKKLKENV-K-LP-ISVHCHN 193 (363)
T ss_pred eecCC--CCHHHHHHHHHHHHhCCCCEE--EEeCCC---------CccCHHHHHHHHHHHhccc-C-ce-EEEEecC
Confidence 35544 468899999999999998864 555553 7999999999999987652 2 22 4444554
No 381
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=39.51 E-value=64 Score=27.59 Aligned_cols=63 Identities=21% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-e--ccCCcchHH
Q psy2349 28 EILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-P--LVPLYSDMD 91 (164)
Q Consensus 28 ~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI-P--eid~pGH~~ 91 (164)
+.++.|+..|+|.+.+-++..-+-....- +-..|.+++.+.++.+++.|+.-| - -+-+||.+.
T Consensus 100 e~l~~l~~~G~~rvsiGvqS~~d~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~ 165 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGLQAWQNSLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTL 165 (374)
T ss_pred HHHHHHHHcCCCEEEEECccCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCH
Confidence 44555555555555544432111000011 236789999999999999998522 1 234577663
No 382
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=39.46 E-value=1.5e+02 Score=24.48 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
++.+......|+. +.+..+|.| .++.+++.++++-+.+.|+..|=--||-|.+.
T Consensus 115 ~~~i~~a~~~G~~-v~~~~eda~----------r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~ 168 (262)
T cd07948 115 VEVIEFVKSKGIE-VRFSSEDSF----------RSDLVDLLRVYRAVDKLGVNRVGIADTVGIAT 168 (262)
T ss_pred HHHHHHHHHCCCe-EEEEEEeeC----------CCCHHHHHHHHHHHHHcCCCEEEECCcCCCCC
Confidence 3334444445543 556666654 23478888888888888999888889988874
No 383
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.37 E-value=1.9e+02 Score=25.00 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHH--cCCeEeeccC
Q psy2349 61 FRETEIFIILAAAES--NGLASIPLVP 85 (164)
Q Consensus 61 yT~~dir~iv~yA~~--~gI~VIPeid 85 (164)
-|.+|+++|.++++. -+|.+||-=.
T Consensus 268 Ds~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 268 MGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred CCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 466777777777776 4556666544
No 384
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=39.23 E-value=2.4e+02 Score=23.87 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=70.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHc----CCeEeeccC
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESN----GLASIPLVP 85 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~-~~~~~~yT~~dir~iv~yA~~~----gI~VIPeid 85 (164)
-|..|.-..|=++..+.+.++.+...|+.+++||.. .+|.... ...+...+.+|..+=++.|++- .+-||--.|
T Consensus 80 PviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq-~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD 158 (292)
T PRK11320 80 PLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQ-VGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTD 158 (292)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecC-CCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 367888544448899999999999999999877764 3565554 4445567888877776666553 356667777
Q ss_pred CcchH---HHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 86 LYSDM---DFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 86 ~pGH~---~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
+.... +++-+...|.+-.. +.+-+--+.+.+-++.+.+++
T Consensus 159 a~~~~g~deAI~Ra~aY~eAGA-----D~ifi~~~~~~~~i~~~~~~~ 201 (292)
T PRK11320 159 ALAVEGLDAAIERAQAYVEAGA-----DMIFPEAMTELEMYRRFADAV 201 (292)
T ss_pred cccccCHHHHHHHHHHHHHcCC-----CEEEecCCCCHHHHHHHHHhc
Confidence 65321 23333333433211 233333355566666666665
No 385
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=39.16 E-value=1.4e+02 Score=24.88 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCeE
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN--GLAS 80 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~--gI~V 80 (164)
+++++.++++.+...|++.+ .+.|+. |..++.++.+++..-+++ ++.+
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i--~l~DT~---------G~~~P~~v~~l~~~l~~~~~~~~i 194 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRI--MLPDTL---------GILSPFETYTYISDMVKRYPNLHF 194 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEE--EecCCC---------CCCCHHHHHHHHHHHHhhCCCCeE
No 386
>PLN02397 aspartate transaminase
Probab=38.82 E-value=41 Score=29.30 Aligned_cols=24 Identities=8% Similarity=-0.164 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|++++++|++.|+++|+-||
T Consensus 208 G~v~s~e~l~~i~~~a~~~~~~vI 231 (423)
T PLN02397 208 GVDPTPEQWEQISDLIKSKNHLPF 231 (423)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE
Confidence 569999999999999999999887
No 387
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=38.79 E-value=75 Score=26.07 Aligned_cols=66 Identities=18% Similarity=0.105 Sum_probs=46.5
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEE-EEEeeccCCCC--CC-----CCCCCCCCHHHHHHHHHHHHH
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSL-LIEWEDTLPYS--LG-----FDNTNPFRETEIFIILAAAES 75 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l-~l~~ed~~p~~--~~-----~~~~~~yT~~dir~iv~yA~~ 75 (164)
=.|.||+=...++.+.+..++......|+..+ ++...+..... .+ +--+..=|.+|.++++++|+=
T Consensus 35 D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 35 DWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred CEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 35889999999999999999999999988765 34333211000 00 111346799999999999864
No 388
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=38.75 E-value=81 Score=25.89 Aligned_cols=25 Identities=4% Similarity=-0.003 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.+.--|..+|++|++.+++.||.+|
T Consensus 200 ~~~eps~~~l~~l~~~ik~~~v~~i 224 (282)
T cd01017 200 PEVEPSPKQLAELVEFVKKSDVKYI 224 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 4567899999999999999999887
No 389
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=38.65 E-value=75 Score=26.78 Aligned_cols=27 Identities=4% Similarity=-0.102 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 56 DNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 56 ~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
..+.--|..+|++|++.+++++|.+|=
T Consensus 231 ~~~~eps~~~l~~l~~~ik~~~v~~If 257 (311)
T PRK09545 231 NPEIQPGAQRLHEIRTQLVEQKATCVF 257 (311)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 345567999999999999999999875
No 390
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=38.56 E-value=44 Score=22.97 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeEe--eccCCcch
Q psy2349 60 PFRETEIFIILAAAESNGLASI--PLVPLYSD 89 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VI--Peid~pGH 89 (164)
.-+.+|+.++.+..+++|+++. |+-..+|+
T Consensus 69 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~ 100 (122)
T cd07265 69 VLDDADLEKLEARLQAYGVAVERIPAGELPGV 100 (122)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEcccCCCCCC
Confidence 4578899999999999999987 44444543
No 391
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=38.54 E-value=39 Score=23.30 Aligned_cols=32 Identities=16% Similarity=-0.085 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
.-|.+++.++.+..+++|+++.+....+|+..
T Consensus 70 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~ 101 (121)
T cd09013 70 ASSPEALERRVAALEASGLGIGWIEGDPGHGK 101 (121)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccCCCCCcc
Confidence 45889999999999999999865555566543
No 392
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=38.53 E-value=51 Score=29.82 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHcCCe-Ee--eccCCcchHH
Q psy2349 60 PFRETEIFIILAAAESNGLA-SI--PLVPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~-VI--Peid~pGH~~ 91 (164)
..|.+++.+.++.|++.|+. |- =-+-+||.+.
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ 335 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGL 335 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCH
Confidence 58999999999999999984 21 1235577764
No 393
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=38.50 E-value=78 Score=26.65 Aligned_cols=77 Identities=8% Similarity=-0.051 Sum_probs=47.2
Q ss_pred eEEEeCC---CCCCCHHHHHHHHHHHHh-cCCCEEEEEeeccCCCC-----------CCCCCCCCCCH----HHHHHHHH
Q psy2349 11 LVHLDLK---GAPPSLTYLKEILPILAY-TGATSLLIEWEDTLPYS-----------LGFDNTNPFRE----TEIFIILA 71 (164)
Q Consensus 11 g~~lD~~---r~~~~~~~lk~~i~~la~-~k~N~l~l~~ed~~p~~-----------~~~~~~~~yT~----~dir~iv~ 71 (164)
-++|-++ .++...+++..++..+|. .++ -+-||+++...++ +-+-.+..+.- +.-|++++
T Consensus 44 PvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~V-PValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~ 122 (284)
T PRK12737 44 PVILAGTPGTFSYAGTDYIVAIAEVAARKYNI-PLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVE 122 (284)
T ss_pred CEEEEcCccHHhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHH
Confidence 3455554 244566777777777764 333 3557777644322 21112333443 46899999
Q ss_pred HHHHcCCeEeeccCCcc
Q psy2349 72 AAESNGLASIPLVPLYS 88 (164)
Q Consensus 72 yA~~~gI~VIPeid~pG 88 (164)
||..+||.|=-|+=.-|
T Consensus 123 ~Ah~~gvsVEaElG~ig 139 (284)
T PRK12737 123 FCHRYDASVEAELGRLG 139 (284)
T ss_pred HHHHcCCEEEEEEeecc
Confidence 99999999988875543
No 394
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.40 E-value=58 Score=28.99 Aligned_cols=32 Identities=3% Similarity=0.154 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHc--CCeEeecc--CCcchHH
Q psy2349 60 PFRETEIFIILAAAESN--GLASIPLV--PLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~--gI~VIPei--d~pGH~~ 91 (164)
.||.+++.++++.+++. ||.|-..| -.||=+.
T Consensus 289 ~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET~ 324 (455)
T PRK14335 289 SYTREHYLSLVGKLKASIPNVALSTDILIGFPGETE 324 (455)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCH
Confidence 58999999999999998 88766543 3355553
No 395
>PRK07682 hypothetical protein; Validated
Probab=38.37 E-value=37 Score=28.66 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..+|.+++++|++.|+++++-||
T Consensus 168 G~~~s~~~~~~l~~~~~~~~~~ii 191 (378)
T PRK07682 168 GAVLNKSELEEIAVIVEKHDLIVL 191 (378)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEE
Confidence 458999999999999999998776
No 396
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=38.34 E-value=96 Score=24.95 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCEEEEEeec----cCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 27 KEILPILAYTGATSLLIEWED----TLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed----~~p~~~~------~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
|++--.|+..|.+.+.++=.+ +-|.-.. +++ .=.-+++..++.+|++.|+.||-----|.=
T Consensus 55 kk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~--SGeT~el~~~~~~aK~~g~~liaiT~~~~S 125 (202)
T COG0794 55 KKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISG--SGETKELLNLAPKAKRLGAKLIAITSNPDS 125 (202)
T ss_pred HHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeC--CCcHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 677778899999999888221 1232221 222 224579999999999999999965555544
No 397
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=38.24 E-value=89 Score=24.69 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
...+++++.++++.+..+|+..+ .+.|++ |..++.++.++++..++.--. -+|..=+|-
T Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~i--~l~Dt~---------G~~~P~~v~~lv~~~~~~~~~--~~l~~H~Hn 190 (237)
T PF00682_consen 132 SRTDPEELLELAEALAEAGADII--YLADTV---------GIMTPEDVAELVRALREALPD--IPLGFHAHN 190 (237)
T ss_dssp GGSSHHHHHHHHHHHHHHT-SEE--EEEETT---------S-S-HHHHHHHHHHHHHHSTT--SEEEEEEBB
T ss_pred ccccHHHHHHHHHHHHHcCCeEE--EeeCcc---------CCcCHHHHHHHHHHHHHhccC--CeEEEEecC
Confidence 44677888888888888888764 555554 788999999999998887544 345555554
No 398
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=38.24 E-value=25 Score=25.91 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhh
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKM 102 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l 102 (164)
..|.+.+-+||+++|++|+-.+.=.|-++.....|+|..+
T Consensus 21 e~Q~~~l~~~a~~~g~~i~~~~~D~~~SG~~~~Rp~l~~l 60 (140)
T cd03770 21 ENQKAILEEYAKENGLENIRHYIDDGFSGTTFDRPGFNRM 60 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEcCCCcCCcCCCHHHHHH
Confidence 4678999999999999987665444544433445666654
No 399
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=38.20 E-value=1.9e+02 Score=24.78 Aligned_cols=69 Identities=14% Similarity=-0.055 Sum_probs=46.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCC-----------------CCC--C----------------
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPY-----------------SLG--F---------------- 55 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~-----------------~~~--~---------------- 55 (164)
-+++|.- .-++++.-.++++.|+.+++.- +|+-+|. ... +
T Consensus 165 ~l~vDaN-~~w~~~~A~~~~~~l~~~~l~~----iEeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~d 239 (361)
T cd03322 165 HLLHDVH-HRLTPNQAARFGKDVEPYRLFW----MEDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLID 239 (361)
T ss_pred eEEEECC-CCCCHHHHHHHHHHhhhcCCCE----EECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCC
Confidence 4788984 5578999999999999877652 2332221 100 0
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 56 ----DNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 56 ----~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
.-...-.-.+.+++.++|+++||.+.|--
T Consensus 240 i~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~ 272 (361)
T cd03322 240 YIRTTVSHAGGITPARKIADLASLYGVRTGWHG 272 (361)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCeeeccC
Confidence 00113456788999999999999999964
No 400
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=38.06 E-value=91 Score=25.73 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2349 28 EILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 28 ~~i~~la~~k~N~l~l~~ed~~p~~~~-~~~~~~yT~~dir~iv~yA~~~gI~V 80 (164)
.+++.++..|+.++.+.. +--.+. + -++++.+++++.++-|+++|+.+
T Consensus 135 ~l~~~a~~aG~~gvMlDT---a~Kdg~~L--~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 135 DLPEIAAEAGFDGVMLDT---ADKDGGSL--FDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHHHcCCCEEEEec---ccCCCCch--hhcCCHHHHHHHHHHHHHccchh
Confidence 344555555665555522 212221 1 14899999999999999999864
No 401
>PLN02849 beta-glucosidase
Probab=38.02 E-value=92 Score=28.35 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCCEEE--EEeeccCCCCCCCCCCCCCCHHH---HHHHHHHHHHcCCeEeec---cCCcchHH
Q psy2349 24 TYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETE---IFIILAAAESNGLASIPL---VPLYSDMD 91 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~--l~~ed~~p~~~~~~~~~~yT~~d---ir~iv~yA~~~gI~VIPe---id~pGH~~ 91 (164)
...++=|.+|+.+|+|..+ |.|+--+|-.. +...++- .+++++.+.++||+.+-- .|+|-...
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~-----g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~ 149 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGR-----GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLE 149 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCC-----CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHH
Confidence 4578999999999999876 56666666421 2345554 478999999999998753 57777664
No 402
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.92 E-value=48 Score=29.21 Aligned_cols=31 Identities=6% Similarity=0.047 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHc--CCeEeec--cCCcchH
Q psy2349 60 PFRETEIFIILAAAESN--GLASIPL--VPLYSDM 90 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~--gI~VIPe--id~pGH~ 90 (164)
.||.+++++.++.+++. ||.|--. +-.||=+
T Consensus 276 ~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET 310 (437)
T PRK14331 276 GYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTET 310 (437)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCC
Confidence 58999999999999998 8876443 2335544
No 403
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=37.83 E-value=35 Score=30.36 Aligned_cols=29 Identities=17% Similarity=0.006 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
.=|.+|+++++++|+++|+.|.+- --||+
T Consensus 21 P~s~eev~~iv~~A~~~~~~v~v~--G~GhS 49 (438)
T TIGR01678 21 PTSVEEVREVLALAREQKKKVKVV--GGGHS 49 (438)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEE--CCCCC
Confidence 348999999999999999988873 44776
No 404
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=37.57 E-value=46 Score=30.70 Aligned_cols=68 Identities=10% Similarity=0.096 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
-..+.+++++++++|+.++--+|.++..........-..+..+-...=.+.+.++++-+.+.+++.+-
T Consensus 422 lp~l~~~l~~~Rk~G~~~vl~~Qs~~QL~~~YG~~~a~tIl~n~~t~i~~~~~d~~tA~~iS~~lG~~ 489 (566)
T TIGR02759 422 LPDLDETIAEVRKFGGCYVLGIQSFAQLEKIYGQNGAATLFDLLNTRFFFRSPSAKMAKIVSDDLGEQ 489 (566)
T ss_pred chhHHHHHHHHhhcCCEEEEEeCCHHHHHHHHCHhHHHHHHhhcCCEEEEeCCCHHHHHHHHHhCCcE
Confidence 46799999999999999999999999998765432222222221112245567788888888888765
No 405
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=37.56 E-value=1.7e+02 Score=24.82 Aligned_cols=68 Identities=25% Similarity=0.167 Sum_probs=44.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCC-----------------CCCC------------CC--C--
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLP-----------------YSLG------------FD--N-- 57 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p-----------------~~~~------------~~--~-- 57 (164)
.+++|.- .-++++.-.++++.|+.+++. .+|+-+| .... +. .
T Consensus 173 ~l~vDan-~~~~~~~A~~~~~~l~~~~~~----~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d 247 (341)
T cd03327 173 DLMLDCY-MSWNLNYAIKMARALEKYELR----WIEEPLIPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVD 247 (341)
T ss_pred cEEEECC-CCCCHHHHHHHHHHhhhcCCc----cccCCCCccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCC
Confidence 5899984 447889999999999988764 2233221 1100 00 0
Q ss_pred ------CCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 58 ------TNPFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 58 ------~~~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
...=.-.+.++|.++|+++||.+.|-
T Consensus 248 ~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 248 ILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 00113568899999999999999984
No 406
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.46 E-value=39 Score=21.79 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeec
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPL 83 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPe 83 (164)
..+| .++.++++.|+++|+.+|=-
T Consensus 57 sg~t-~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 57 SGRT-EELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CCCC-HHHHHHHHHHHHcCCeEEEE
Confidence 3456 55888999999999998743
No 407
>PRK06801 hypothetical protein; Provisional
Probab=37.32 E-value=1.1e+02 Score=25.78 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCC-----------C-CCCCCCCC----HHHHHHHHHHHHHcCCeEee
Q psy2349 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSL-----------G-FDNTNPFR----ETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~-----------~-~~~~~~yT----~~dir~iv~yA~~~gI~VIP 82 (164)
.+...+.+-.++..+|..----+-+|+++...+.. - +. +..++ .+..++++++|+.+||.|=-
T Consensus 55 ~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D-~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ 133 (286)
T PRK06801 55 KYISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFD-GSTLEYEENVRQTREVVKMCHAVGVSVEA 133 (286)
T ss_pred hcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEc-CCCCCHHHHHHHHHHHHHHHHHcCCeEEe
Confidence 33555666666666665221224566655432211 0 11 12233 34678999999999999877
Q ss_pred ccCCcc
Q psy2349 83 LVPLYS 88 (164)
Q Consensus 83 eid~pG 88 (164)
|+...|
T Consensus 134 ElG~vg 139 (286)
T PRK06801 134 ELGAVG 139 (286)
T ss_pred ecCccc
Confidence 777665
No 408
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=37.27 E-value=45 Score=30.00 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcC
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV 96 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~ 96 (164)
.++++++++++++|++.|++++=|+-+.-.++.++..
T Consensus 142 ~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~ 178 (454)
T PRK09427 142 VLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL 178 (454)
T ss_pred hCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhC
Confidence 7899999999999999999999999998888877653
No 409
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=37.11 E-value=51 Score=26.19 Aligned_cols=23 Identities=4% Similarity=-0.080 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCeEeeccCC
Q psy2349 64 TEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~VIPeid~ 86 (164)
+++.+++++.+++|+.+=--++-
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP 114 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNP 114 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-T
T ss_pred hCHHHHHHHHHHhCCCEEEEEEC
Confidence 45778888888888876555543
No 410
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=37.09 E-value=36 Score=31.42 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
.=|.+||+++|++|+++|+.|.+- ---||+
T Consensus 38 P~s~eeV~~iV~~A~~~g~~v~v~-GG~gHs 67 (557)
T TIGR01677 38 PKTEAELVSVVAAATAAGRKMKVV-TRYSHS 67 (557)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEE-eCCCCC
Confidence 348999999999999999998873 113676
No 411
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=37.05 E-value=1.8e+02 Score=25.48 Aligned_cols=58 Identities=9% Similarity=0.093 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~p 87 (164)
.++.+-.++=|++....|+.++-|-+- ..+.++.+.+..+.+.|++.|..|...+|+.
T Consensus 13 ~yt~~dw~~di~~A~~~GIDgFaLNig----------~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~ 70 (386)
T PF03659_consen 13 NYTQEDWEADIRLAQAAGIDGFALNIG----------SSDSWQPDQLADAYQAAEAVGFKLFFSFDMN 70 (386)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecc----------cCCcccHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 468899999999999999999888664 2357889999999999999999999999993
No 412
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=37.02 E-value=1.5e+02 Score=22.32 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD 89 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH 89 (164)
+..++.+.+.+.|..+... +.++ . ++++. +-.+++.+|+++++++|+.+. ++| |+
T Consensus 43 g~~lt~eel~~~I~~~~~~-~~gV--t----------~SGGE-l~~~~l~~ll~~lk~~Gl~i~--l~T-g~ 97 (147)
T TIGR02826 43 GTKLTPEYLTKTLDKYRSL-ISCV--L----------FLGGE-WNREALLSLLKIFKEKGLKTC--LYT-GL 97 (147)
T ss_pred CcCCCHHHHHHHHHHhCCC-CCEE--E----------Eechh-cCHHHHHHHHHHHHHCCCCEE--EEC-CC
Confidence 4568888888887765411 1111 1 45566 788899999999999999874 556 44
No 413
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=37.02 E-value=89 Score=22.16 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCC-C--CHHHHHHHHHHHHHcCC-eEe
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNP-F--RETEIFIILAAAESNGL-ASI 81 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~-y--T~~dir~iv~yA~~~gI-~VI 81 (164)
.++.+.++++++.+...+...+.+.= +.+ + ..+++.++++++++++. .++
T Consensus 35 ~~~~~~~~~ii~~~~~~~~~~i~l~G------------GEPll~~~~~~l~~i~~~~k~~~~~~~~ 88 (139)
T PF13353_consen 35 ELSEEIIEEIIEELKNYGIKGIVLTG------------GEPLLHENYDELLEILKYIKEKFPKKII 88 (139)
T ss_dssp EC-HHHHHHHCHHHCCCCCCEEEEEC------------STGGGHHSHHHHHHHHHHHHHTT-SEEE
T ss_pred cccchhhhhhhhHHhcCCceEEEEcC------------CCeeeeccHhHHHHHHHHHHHhCCCCeE
Confidence 35688999999999887776654421 222 2 47999999999999999 444
No 414
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=36.91 E-value=2.4e+02 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeecc
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLV 84 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~---gI~VIPei 84 (164)
-...+.++++++.+...|++++.+-= + ......+|.+|-+++++.+.+. .+.||.-+
T Consensus 17 ~iD~~~l~~l~~~l~~~Gv~gi~v~G-------s-tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv 76 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYGAAALFAAG-------G-TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA 76 (289)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECc-------C-CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec
Confidence 36678899999999999999984310 0 1122366677766666655543 35566555
No 415
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=36.81 E-value=79 Score=28.51 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCCEEE--EEeeccCCCCCCCCCCCCCCHH---HHHHHHHHHHHcCCeEeec---cCCcchH
Q psy2349 24 TYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRET---EIFIILAAAESNGLASIPL---VPLYSDM 90 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~--l~~ed~~p~~~~~~~~~~yT~~---dir~iv~yA~~~gI~VIPe---id~pGH~ 90 (164)
...++=|++|+.+|+|..+ |.|+--+|-.. .+...++ =.++++..+.++||+.+-- .|+|-..
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~----~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L 137 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGD----ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHL 137 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCC----CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHH
Confidence 3478999999999999876 66666666421 1223444 3478999999999998764 4777765
No 416
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=36.77 E-value=90 Score=28.26 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcCC-C--EEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 21 PSLTYLKEILPILAYTGA-T--SLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~-N--~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
++++.|++.|.. .+. + -+.+....+ +..+...+.+++++|.+.|+++||.||=.-
T Consensus 161 lD~d~Le~~I~~---~~~~~~~lV~a~itvn------~~GGqpvs~~~m~~I~elA~~~Gl~Vi~Da 218 (460)
T PRK13237 161 VDLDKLQALIDE---VGAENIAYICLAVTVN------LAGGQPVSMANMRAVRELCDKHGIKVFFDA 218 (460)
T ss_pred cCHHHHHHHhcc---ccCCccCceEEEEecc------cCCCeeCCHHhHHHHHHHHHHcCCEEEEEC
Confidence 677777777752 221 1 122333322 223468899999999999999999998543
No 417
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=36.54 E-value=66 Score=25.60 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
+++.++.++..|++++-|.. |+ .. ++.+|.+.++++||+|.=
T Consensus 16 l~e~~~~~~e~G~~~vEl~~----~~--------~~---~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLF----PY--------DW---DAEALKARLAAAGLEQVL 57 (254)
T ss_pred HHHHHHHHHHcCCCEEEecC----Cc--------cC---CHHHHHHHHHHcCCeEEE
Confidence 78999999999999986632 22 12 355666677899999863
No 418
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=36.54 E-value=1.4e+02 Score=24.35 Aligned_cols=21 Identities=33% Similarity=0.202 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCEEEEEeecc
Q psy2349 28 EILPILAYTGATSLLIEWEDT 48 (164)
Q Consensus 28 ~~i~~la~~k~N~l~l~~ed~ 48 (164)
.+++.++..|+..+.|.+||+
T Consensus 24 ~~~e~~~~~g~D~v~iDlEH~ 44 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGEHA 44 (249)
T ss_pred HHHHHHHhcCCCEEEEeccCC
Confidence 456678888999998888885
No 419
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.35 E-value=57 Score=29.54 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHc--CCeEeec--cCCcchHH
Q psy2349 60 PFRETEIFIILAAAESN--GLASIPL--VPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~--gI~VIPe--id~pGH~~ 91 (164)
.||.+++.++++.++++ ||.|.-. +-.||-+.
T Consensus 288 ~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgET~ 323 (502)
T PRK14326 288 SYRSERFLGILEKVRAAMPDAAITTDIIVGFPGETE 323 (502)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCCCCH
Confidence 59999999999999996 6555443 23366653
No 420
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=36.35 E-value=1.4e+02 Score=24.92 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCe------------------------Eeecc
Q psy2349 29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLA------------------------SIPLV 84 (164)
Q Consensus 29 ~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~------------------------VIPei 84 (164)
..+.++..|+..+.+..|+. .++.+++..++..++..|+. |+|-|
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg-----------~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V 99 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHA-----------PNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMV 99 (267)
T ss_pred HHHHHHHcCCCEEEEccccC-----------CCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCc
Confidence 45667788888888888873 44555555555555555443 56777
Q ss_pred CCcchHHHHhc
Q psy2349 85 PLYSDMDFVLK 95 (164)
Q Consensus 85 d~pGH~~~~l~ 95 (164)
++.-.+..+.+
T Consensus 100 ~saeeA~~~V~ 110 (267)
T PRK10128 100 DTAEQARQVVS 110 (267)
T ss_pred CCHHHHHHHHH
Confidence 77777766554
No 421
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.28 E-value=23 Score=24.80 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=29.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2349 55 FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK 95 (164)
Q Consensus 55 ~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~ 95 (164)
++.+..+|.+|. +|.+.|..-||.+-|+| +.|.--+|+
T Consensus 17 ~~rk~~Ls~eE~-EL~ELa~~AGv~~dp~V--FriildLL~ 54 (88)
T PF12926_consen 17 LRRKKVLSAEEV-ELYELAQLAGVPMDPEV--FRIILDLLR 54 (88)
T ss_pred HHHHhccCHHHH-HHHHHHHHhCCCcChHH--HHHHHHHHH
Confidence 344678999998 99999999999999986 555544443
No 422
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=36.24 E-value=2.4e+02 Score=23.07 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEE
Q psy2349 21 PSLTYLKEILPILAYTGATSLLI 43 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l 43 (164)
...+.++++++.+...|++++.+
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~ 41 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVV 41 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEE
Confidence 56678999999999999999854
No 423
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=36.19 E-value=59 Score=23.68 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2349 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~V 80 (164)
..++++.+.+...+++.+.+-+. .-+.++++++++.|++.||+|
T Consensus 128 g~~~~l~~~~~~~~id~v~ial~-------------~~~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 128 GDLDDLPELVREHDIDEVIIALP-------------WSEEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp --GGGHHHHHHHHT--EEEE--T-------------TS-HHHHHHHHHHHHTTT-EE
T ss_pred cCHHHHHHHHHhCCCCEEEEEcC-------------ccCHHHHHHHHHHHHhCCCEE
Confidence 34455555666666665544332 235789999999999999986
No 424
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.18 E-value=90 Score=19.74 Aligned_cols=57 Identities=11% Similarity=0.010 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~-~~~~~~yT~~dir~iv~yA~~~gI~V 80 (164)
+-.|+++++.++. |.|-..++......-... .-.=..-.++++.+|++--++.|..+
T Consensus 9 PG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 9 PGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 3468999999999 999887777653311111 00002335677777777777777653
No 425
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=36.13 E-value=42 Score=23.18 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 59 NPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VI 81 (164)
-..|.+|.++|++.|+++|+.+.
T Consensus 95 ~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 95 LALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp SSSSHHHHHHHHHHHHHHTSCEE
T ss_pred CcCCHHHHHHHHHHHHHhCCEEE
Confidence 46799999999999999998764
No 426
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=36.12 E-value=56 Score=24.90 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=26.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCE
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATS 40 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~ 40 (164)
-+|+|+.-++.|-..|++++-.+..+|+..
T Consensus 97 EiHiDIg~~g~T~~~i~E~vG~v~~~G~~~ 126 (144)
T PF04308_consen 97 EIHIDIGTNGKTRELIKEVVGYVEGMGFEA 126 (144)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHHHCCceE
Confidence 589999999999999999999999888653
No 427
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=36.10 E-value=2e+02 Score=24.09 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCCEEEEEee
Q psy2349 27 KEILPILAYTGATSLLIEWE 46 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~e 46 (164)
.+.++.|...|++.+.+-++
T Consensus 102 ~~~~~~L~~~gl~~v~ISld 121 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSLD 121 (334)
T ss_pred HHHHHHHHHcCCCeEEEecc
Confidence 45667777777777766554
No 428
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=35.98 E-value=15 Score=24.99 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 62 RETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 62 T~~dir~iv~yA~~~gI~VIPeid 85 (164)
+.+++.++.+.++++|++++...+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~~~ 106 (126)
T cd08346 83 SEASLDAWRERLRAAGVPVSGVVD 106 (126)
T ss_pred CHHHHHHHHHHHHHcCCcccceEe
Confidence 566999999999999999876443
No 429
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=35.96 E-value=1.1e+02 Score=25.13 Aligned_cols=45 Identities=27% Similarity=0.169 Sum_probs=31.5
Q ss_pred CCCEEEEEeeccCCCCCC--------CCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 37 GATSLLIEWEDTLPYSLG--------FDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 37 k~N~l~l~~ed~~p~~~~--------~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.++.+.|++++.=++... ......+|.+++..++++++..|++-|
T Consensus 8 ~~~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I 60 (302)
T TIGR02668 8 PVTSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKV 60 (302)
T ss_pred ccCeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEE
Confidence 456778888764333332 112357999999999999999998654
No 430
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.94 E-value=52 Score=29.08 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEeeccC----CcchH
Q psy2349 59 NPFRETEIFIILAAAESNGLASIPLVP----LYSDM 90 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VIPeid----~pGH~ 90 (164)
..||.+++.+.++.+++.|..+....| .||-+
T Consensus 267 R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt 302 (440)
T PRK14334 267 REYRREKYLERIAEIREALPDVVLSTDIIVGFPGET 302 (440)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCC
Confidence 478999999999999999877655443 35555
No 431
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=35.73 E-value=84 Score=25.18 Aligned_cols=38 Identities=5% Similarity=-0.000 Sum_probs=26.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCe-EeeccCCcchHHHH
Q psy2349 56 DNTNPFRETEIFIILAAAESNGLA-SIPLVPLYSDMDFV 93 (164)
Q Consensus 56 ~~~~~yT~~dir~iv~yA~~~gI~-VIPeid~pGH~~~~ 93 (164)
..+...|.+++++|++..++.+|. |+-|-+.+.-....
T Consensus 178 ~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~ 216 (256)
T PF01297_consen 178 SPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEA 216 (256)
T ss_dssp SSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHH
T ss_pred ccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHH
Confidence 557789999999999999999995 45566555554333
No 432
>KOG3257|consensus
Probab=35.57 E-value=23 Score=27.59 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCeEeec
Q psy2349 66 IFIILAAAESNGLASIPL 83 (164)
Q Consensus 66 ir~iv~yA~~~gI~VIPe 83 (164)
.|.|+--|+..||.|+|+
T Consensus 141 ~rsiigtA~smGIkVvp~ 158 (168)
T KOG3257|consen 141 CRSIIGTARSMGIKVVPP 158 (168)
T ss_pred HHHHHHHHHhCccccchh
Confidence 577888999999999995
No 433
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=35.54 E-value=1.5e+02 Score=20.62 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 62 RETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 62 T~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
-+.+++++++.+++-.+-||.++|-.|-.
T Consensus 41 ~R~~~~~ll~~~~~~d~lvv~~~dRl~R~ 69 (126)
T cd03768 41 ERPELQKLLEDLREGDTLVVTKLDRLGRS 69 (126)
T ss_pred CCHHHHHHHHhCcCCCEEEEEEcchhcCc
Confidence 34566666666665556666666665554
No 434
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=35.50 E-value=1.6e+02 Score=25.35 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~V 80 (164)
+.+++.+.|++++|....+|.+.++|.-.+.+-+. ..|.+++-++++.-++-|+.+
T Consensus 39 gg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~-------~i~~e~~~~v~~~L~~iG~~~ 94 (317)
T COG2221 39 GGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIP-------GISPEDADDVVEELREIGLPV 94 (317)
T ss_pred CCccCHHHHHHHHHHHHHhCCCeEEEEecCceEec-------cCCHHHHHHHHHHHHHcCCCC
Confidence 57899999999999999999998877665543322 257778888888777666554
No 435
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=35.37 E-value=1.2e+02 Score=26.26 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
.+++++.++++.+...|++.+ .+.|+. |..++.++.+++...+++ +.. +.|..=+|-
T Consensus 194 ~~~~~l~~~~~~~~~~Gad~I--~l~DT~---------G~a~P~~v~~lv~~l~~~-~~~-~~i~~H~Hn 250 (347)
T PLN02746 194 VPPSKVAYVAKELYDMGCYEI--SLGDTI---------GVGTPGTVVPMLEAVMAV-VPV-DKLAVHFHD 250 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEE--EecCCc---------CCcCHHHHHHHHHHHHHh-CCC-CeEEEEECC
Confidence 468888888888888888854 555553 788999999999998765 221 135665664
No 436
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=35.09 E-value=1.2e+02 Score=30.61 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=48.5
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 14 lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
+|-.+..++++|+.++...|...|++.+ .+.|+ .|.+++.++++++..-++. +. +| |..=.|.
T Consensus 679 ~d~~~~~~~l~y~~~~ak~l~~~Gad~I--~ikDt---------~Gll~P~~~~~Lv~~lk~~-~~-~p-i~~H~Hd 741 (1143)
T TIGR01235 679 LDPARPKYDLKYYTNLAVELEKAGAHIL--GIKDM---------AGLLKPAAAKLLIKALREK-TD-LP-IHFHTHD 741 (1143)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHcCCCEE--EECCC---------cCCcCHHHHHHHHHHHHHh-cC-Ce-EEEEECC
Confidence 4557888999999999999999999854 56665 3899999999999998875 22 22 4444554
No 437
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=35.02 E-value=1.2e+02 Score=24.54 Aligned_cols=56 Identities=9% Similarity=0.059 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
++.+.+.+.+..++..+...+ . ++++..+-+.++.+|+++++++|+.| .|+|=|..
T Consensus 56 ~s~~ei~~~i~~~~~~~~~~V--~----------lTGGEPll~~~l~~li~~l~~~g~~v--~leTNGtl 111 (238)
T TIGR03365 56 MTAEEVWQELKALGGGTPLHV--S----------LSGGNPALQKPLGELIDLGKAKGYRF--ALETQGSV 111 (238)
T ss_pred CCHHHHHHHHHHHhCCCCCeE--E----------EeCCchhhhHhHHHHHHHHHHCCCCE--EEECCCCC
Confidence 677767666666543322221 1 34566776779999999999999987 57777765
No 438
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=34.96 E-value=39 Score=31.14 Aligned_cols=30 Identities=17% Similarity=-0.058 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
.=|.+|+++||+.|+++|+.|.| --=||+-
T Consensus 68 P~s~eEV~~iV~~A~~~g~~Vr~--~GsGhS~ 97 (541)
T TIGR01676 68 PEAIEELEGIVKQANEKKARIRP--VGSGLSP 97 (541)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--ECCCcCC
Confidence 34899999999999999999999 3348873
No 439
>KOG2741|consensus
Probab=34.92 E-value=43 Score=29.21 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 60 PFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
..|.+|.++|++.|++||+.++=-+
T Consensus 106 a~n~~e~~~iveaA~~rgv~~meg~ 130 (351)
T KOG2741|consen 106 AMNVAEAEEIVEAAEARGVFFMEGL 130 (351)
T ss_pred cCCHHHHHHHHHHHHHcCcEEEeee
Confidence 7799999999999999998876433
No 440
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=34.91 E-value=1.2e+02 Score=25.07 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
-++.+..||+.|+.+-+.+||-|.
T Consensus 170 VDPiaV~dIq~iI~~L~~rgiGvL 193 (243)
T COG1137 170 VDPIAVIDIQRIIKHLKDRGIGVL 193 (243)
T ss_pred CCchhHHHHHHHHHHHHhCCceEE
Confidence 479999999999999999999885
No 441
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=34.82 E-value=93 Score=28.07 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCCEEE--EEeeccCCCCCCCCCCCCCCHH---HHHHHHHHHHHcCCeEeecc---CCcchHH
Q psy2349 24 TYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRET---EIFIILAAAESNGLASIPLV---PLYSDMD 91 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~--l~~ed~~p~~~~~~~~~~yT~~---dir~iv~yA~~~gI~VIPei---d~pGH~~ 91 (164)
...++=|++|+.+|+|..+ |.|+--+|-.. .+...++ =.++|+....++||+.+--+ |+|-...
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~----~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGD----ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCC----CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHH
Confidence 4578999999999999776 66666666421 1223443 35789999999999987654 7777663
No 442
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=34.62 E-value=1.5e+02 Score=25.74 Aligned_cols=76 Identities=8% Similarity=-0.053 Sum_probs=47.5
Q ss_pred EEEeCC---CCCCCHHHHHHHHHHHHhcCC-CEEEEEeeccCCCC-----------CCCCCCCCC-----------CHHH
Q psy2349 12 VHLDLK---GAPPSLTYLKEILPILAYTGA-TSLLIEWEDTLPYS-----------LGFDNTNPF-----------RETE 65 (164)
Q Consensus 12 ~~lD~~---r~~~~~~~lk~~i~~la~~k~-N~l~l~~ed~~p~~-----------~~~~~~~~y-----------T~~d 65 (164)
++|-++ ..+...+.+..++..++...- --+-||+++...|. +-+-.+..+ ..+.
T Consensus 45 vIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~ 124 (347)
T PRK13399 45 VILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDV 124 (347)
T ss_pred EEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHH
Confidence 445553 355667777777777776542 34667776643322 111112233 3456
Q ss_pred HHHHHHHHHHcCCeEeeccCCc
Q psy2349 66 IFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 66 ir~iv~yA~~~gI~VIPeid~p 87 (164)
-|++++||..+||.|=-||=..
T Consensus 125 Trevve~Ah~~GvsVEaELG~i 146 (347)
T PRK13399 125 TRRVTEMAHAVGVSVEGELGCL 146 (347)
T ss_pred HHHHHHHHHHcCCeEEEEeeec
Confidence 8999999999999999998433
No 443
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=34.56 E-value=1.9e+02 Score=25.70 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
..-+.++.|++.+... |...+ +..-+|.+. .+..||.+.-++|++.|+++++-|| |=|..|..
T Consensus 210 ~~G~~~e~le~~~~~~---~~k~~--y~~P~~qNP----tG~tms~~rR~~Ll~lA~~~~~~II-EDD~y~el 272 (459)
T COG1167 210 EDGIDPEALEEALAQW---KPKAV--YVTPTFQNP----TGVTMSLERRKALLALAEKYDVLII-EDDYYGEL 272 (459)
T ss_pred CCCCCHHHHHHHHhhc---CCcEE--EECCCCCCC----CCCccCHHHHHHHHHHHHHcCCeEE-eeCcchhh
Confidence 4455555555554443 44433 333233222 3569999999999999999999988 44554444
No 444
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=34.37 E-value=1.9e+02 Score=23.50 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHcCCeEeec-cCCcchHHHHhc
Q psy2349 60 PFRETEIFIILAAAESNGLASIPL-VPLYSDMDFVLK 95 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIPe-id~pGH~~~~l~ 95 (164)
.-.+.=++.|++.|++.|++||-| |++......+.+
T Consensus 189 ~~~~~iv~~iv~la~~l~~~vvaEGVEt~~ql~~L~~ 225 (256)
T COG2200 189 ARDQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRE 225 (256)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEeecCCHHHHHHHHH
Confidence 444567999999999999999988 899999987755
No 445
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.33 E-value=1.1e+02 Score=25.70 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=31.0
Q ss_pred CCCEEEEEeeccCCCCCC---------CCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 37 GATSLLIEWEDTLPYSLG---------FDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 37 k~N~l~l~~ed~~p~~~~---------~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+++.+.|++++.=++... ......+|.+|+..+++.+.+.||..|
T Consensus 12 ~i~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I 65 (329)
T PRK13361 12 TVTYLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKI 65 (329)
T ss_pred ccCeEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEE
Confidence 356677777664333332 122457999999999999999998654
No 446
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=34.33 E-value=77 Score=22.98 Aligned_cols=12 Identities=33% Similarity=0.263 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhc
Q psy2349 25 YLKEILPILAYT 36 (164)
Q Consensus 25 ~lk~~i~~la~~ 36 (164)
.+.+++..+...
T Consensus 60 ~~~~~i~~~~~~ 71 (204)
T cd01335 60 ELAELLRRLKKE 71 (204)
T ss_pred hHHHHHHHHHhh
Confidence 445555555444
No 447
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=34.29 E-value=1.5e+02 Score=25.47 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeE
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN-GLAS 80 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~-gI~V 80 (164)
+++++.++++.+...|++.+.|-.+- |..|+.++.++++..+++ ++.|
T Consensus 140 ~~~~l~~~~~~~~~~Ga~~i~l~DT~-----------G~~~P~~v~~lv~~l~~~~~v~l 188 (365)
T TIGR02660 140 DPDFLVELAEVAAEAGADRFRFADTV-----------GILDPFSTYELVRALRQAVDLPL 188 (365)
T ss_pred CHHHHHHHHHHHHHcCcCEEEEcccC-----------CCCCHHHHHHHHHHHHHhcCCeE
No 448
>PRK09989 hypothetical protein; Provisional
Probab=34.26 E-value=55 Score=26.27 Aligned_cols=59 Identities=7% Similarity=-0.083 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCC--CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTN--PFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 23 ~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~--~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
.+.+++.|+..+.+|...+++.... .| .+ ..... ..+.+-++++.++|+++||++.=|-
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~g~-~~-~~-~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 144 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMAGV-VP-AG-EDAERYRAVFIDNLRYAADRFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECccC-CC-CC-CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4668999999999999988654321 11 10 00011 2356788999999999999997664
No 449
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.11 E-value=45 Score=23.43 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
-.|+.+.++.|+++|+.||=--+.++-.
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 4578889999999999999887766544
No 450
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=34.06 E-value=2.3e+02 Score=23.67 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCEEEEEeeccC--CCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 26 LKEILPILAYTGATSLLIEWEDTL--PYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 26 lk~~i~~la~~k~N~l~l~~ed~~--p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
+++.+......|+. +...+..+| |+. +..+.+.+.++++-+.+.|++.|=--||-|.+.
T Consensus 122 ~~~~v~~ak~~g~~-v~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~ 182 (287)
T PRK05692 122 FEPVAEAAKQAGVR-VRGYVSCVLGCPYE------GEVPPEAVADVAERLFALGCYEISLGDTIGVGT 182 (287)
T ss_pred HHHHHHHHHHcCCE-EEEEEEEEecCCCC------CCCCHHHHHHHHHHHHHcCCcEEEeccccCccC
Confidence 45555555555543 333444333 333 356788888888888888888888888888773
No 451
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=34.04 E-value=1.6e+02 Score=26.69 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCCEEE--EEeeccCCCCCCCCCCCCCCHH---HHHHHHHHHHHcCCeEeec---cCCcchH
Q psy2349 25 YLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRET---EIFIILAAAESNGLASIPL---VPLYSDM 90 (164)
Q Consensus 25 ~lk~~i~~la~~k~N~l~--l~~ed~~p~~~~~~~~~~yT~~---dir~iv~yA~~~gI~VIPe---id~pGH~ 90 (164)
..|+=|++|+++|+|.++ |.|+--||-... +...++ =.++|+.-+.++||+.+=- +|+|=|+
T Consensus 60 rYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~----~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L 129 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTSIEWSRIFPNGDG----GEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWL 129 (460)
T ss_pred hhHHHHHHHHHcCCCEEEeeeeEEEeecCCCC----CCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHH
Confidence 468999999999999886 677777775443 122222 3468999999999997754 4666665
No 452
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=34.03 E-value=1.3e+02 Score=31.14 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEE----eec-cCCCCCC--C-CCCCC----CCHHHHHHHHHHHHHc-CCeEeeccCCcchH
Q psy2349 24 TYLKEILPILAYTGATSLLIE----WED-TLPYSLG--F-DNTNP----FRETEIFIILAAAESN-GLASIPLVPLYSDM 90 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~----~ed-~~p~~~~--~-~~~~~----yT~~dir~iv~yA~~~-gI~VIPeid~pGH~ 90 (164)
+...+-++.++.+|+|.+++- ... .-||+.. + -+..+ -|.+|++++|+-|.++ |+.+|=.+ +.-|+
T Consensus 132 ~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv-V~NHT 210 (1464)
T TIGR01531 132 SEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI-VFNHT 210 (1464)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe-eeccc
Confidence 556788999999999987642 111 2344433 1 11223 3889999999999996 99999776 56777
Q ss_pred H----HHhcCcc
Q psy2349 91 D----FVLKVKE 98 (164)
Q Consensus 91 ~----~~l~~~~ 98 (164)
+ |+..||+
T Consensus 211 a~ds~Wl~eHPE 222 (1464)
T TIGR01531 211 ANNSPWLLEHPE 222 (1464)
T ss_pred ccCCHHHHhChH
Confidence 4 4455665
No 453
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=34.02 E-value=1.5e+02 Score=25.92 Aligned_cols=76 Identities=8% Similarity=-0.026 Sum_probs=47.4
Q ss_pred EEEeCCC---CCCCHHHHHHHHHHHHhcCC-CEEEEEeeccCCC-----------CCCCCCCCCC-----------CHHH
Q psy2349 12 VHLDLKG---APPSLTYLKEILPILAYTGA-TSLLIEWEDTLPY-----------SLGFDNTNPF-----------RETE 65 (164)
Q Consensus 12 ~~lD~~r---~~~~~~~lk~~i~~la~~k~-N~l~l~~ed~~p~-----------~~~~~~~~~y-----------T~~d 65 (164)
++|-++. .+...+.+..++..++.-.- --+-||+++...+ ++-+-.+..+ ..+.
T Consensus 43 vIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~ 122 (347)
T TIGR01521 43 VILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRV 122 (347)
T ss_pred EEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHH
Confidence 5555542 44567777788887777442 2466777664322 2211112222 3456
Q ss_pred HHHHHHHHHHcCCeEeeccCCc
Q psy2349 66 IFIILAAAESNGLASIPLVPLY 87 (164)
Q Consensus 66 ir~iv~yA~~~gI~VIPeid~p 87 (164)
-|++++||..+||.|=-|+=..
T Consensus 123 Tkevve~Ah~~GvsVEaELG~i 144 (347)
T TIGR01521 123 TAEVVAFAHAVGASVEGELGCL 144 (347)
T ss_pred HHHHHHHHHHcCCeEEEEeeec
Confidence 8999999999999998887544
No 454
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.99 E-value=2.1e+02 Score=24.28 Aligned_cols=73 Identities=22% Similarity=0.193 Sum_probs=45.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEE--EEeec-----------cCCCCCC------------CCC--------
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLL--IEWED-----------TLPYSLG------------FDN-------- 57 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~--l~~ed-----------~~p~~~~------------~~~-------- 57 (164)
-+++|.- .-++++.-.++++.|+.+++.-+- +..+| ..|.... +..
T Consensus 178 ~l~vDaN-~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~ 256 (352)
T cd03325 178 DIGVDFH-GRVSKPMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQP 256 (352)
T ss_pred EEEEECC-CCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEec
Confidence 5889985 446889999999999887765331 11111 1121111 000
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 58 --TNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 58 --~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
...-.-.+.+++.++|+++||.++|--
T Consensus 257 d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 257 DISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 112246788899999999999999864
No 455
>KOG0560|consensus
Probab=33.82 E-value=1.1e+02 Score=28.27 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=19.3
Q ss_pred CCceeEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEE
Q psy2349 7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE 44 (164)
Q Consensus 7 ~~~Rg~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~ 44 (164)
..++|+|++.+|--- -..|..++.++.++...+.|.
T Consensus 423 l~f~glhVe~GRve~--l~~ktglRev~e~~~~e~rlT 458 (638)
T KOG0560|consen 423 LSFVGLHVENGRVEA--LDMKTGLREVAEYGSGELRLT 458 (638)
T ss_pred ceEEEEEcccccccc--chhhhHHHHHHHhhcceeeec
Confidence 345666666654322 224555666666666555443
No 456
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=33.80 E-value=2e+02 Score=24.21 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=18.7
Q ss_pred ceeEEEeCCCCCC--CHHHHHHHHHHHHhcCCC
Q psy2349 9 EVLVHLDLKGAPP--SLTYLKEILPILAYTGAT 39 (164)
Q Consensus 9 ~Rg~~lD~~r~~~--~~~~lk~~i~~la~~k~N 39 (164)
+..||+|-|...+ .++.-+++.+....+|+.
T Consensus 98 ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~ 130 (283)
T PRK07998 98 FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVP 130 (283)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 4567777766554 455556666666666654
No 457
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.78 E-value=1.3e+02 Score=23.70 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=38.5
Q ss_pred HHHHHhcCCCEEEEEeeccC-CCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2349 30 LPILAYTGATSLLIEWEDTL-PYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP 85 (164)
Q Consensus 30 i~~la~~k~N~l~l~~ed~~-p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid 85 (164)
.+.|...|+.++.+.+++|. |+. +.+-..|+++.++-+++.||.|+=.=+
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~wd------~~~~tpe~~~W~~e~k~~gi~v~vvSN 70 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVPWD------NPDATPELRAWLAELKEAGIKVVVVSN 70 (175)
T ss_pred HHHHHHcCCcEEEEeccCceeccc------CCCCCHHHHHHHHHHHhcCCEEEEEeC
Confidence 35688899999999888773 443 455567899999999999999875433
No 458
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=33.78 E-value=53 Score=31.05 Aligned_cols=69 Identities=10% Similarity=0.034 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 62 RETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 62 T~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
.-..+.+.+++.+.+||.++.-+|..+-...+........+..+-...-.+-+.+++|-+.+.+++.+.
T Consensus 403 ~ip~l~~~la~~RgyGi~~~~I~QslsQL~~~YG~~~a~tIl~Nc~~~i~lg~~D~~TAe~iS~~LG~~ 471 (670)
T PRK13850 403 KLEAIETAITTIAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGDY 471 (670)
T ss_pred chHHHHHHHHHhccCCcEEEEEEEcHHHHHHHhCHhHHHHHHHhCCcEEEeecCCHHHHHHHHHHhCCe
Confidence 456899999999999999999999999987664322222232222222346678889999999998887
No 459
>PTZ00413 lipoate synthase; Provisional
Probab=33.68 E-value=1.9e+02 Score=25.75 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeec-cCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe---eccCCcchHH
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWED-TLPYSLGFDNTNPFRETEIFIILAAAESNGLASI---PLVPLYSDMD 91 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed-~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI---Peid~pGH~~ 91 (164)
-+.+.+.+++..|..+|++.+-| .+ ..|-..++.-..++++++..++-++|.+.|..-| |.+-+-=|++
T Consensus 307 ET~eEvie~m~dLrelGVDivtI--GQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRSSY~A~ 379 (398)
T PTZ00413 307 ETEEEVRQTLRDLRTAGVSAVTL--GQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRSSYRAG 379 (398)
T ss_pred CCHHHHHHHHHHHHHcCCcEEee--ccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccccchhcc
Confidence 35566777777777777775533 11 1133333444567888888888888888876544 4444444443
No 460
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=33.64 E-value=45 Score=27.94 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEee
Q psy2349 60 PFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIP 82 (164)
.-|.+|+.+++++|+++++.+++
T Consensus 37 P~s~edv~~~v~~a~~~~~p~~v 59 (298)
T PRK13905 37 PADIEDLQEFLKLLKENNIPVTV 59 (298)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE
Confidence 45999999999999999988876
No 461
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=33.58 E-value=47 Score=23.46 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCeEeecc
Q psy2349 64 TEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~VIPei 84 (164)
.|+.+.+++|+++|+.+|---
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 478889999999999998655
No 462
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=33.56 E-value=3.1e+02 Score=23.46 Aligned_cols=102 Identities=17% Similarity=0.306 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEEe-eccCCCCCC------CCCCCCCCHHHHHH-HH-HHHHHcCCeEeeccCCcchHHHHh
Q psy2349 24 TYLKEILPILAYTGATSLLIEW-EDTLPYSLG------FDNTNPFRETEIFI-IL-AAAESNGLASIPLVPLYSDMDFVL 94 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~~-ed~~p~~~~------~~~~~~yT~~dir~-iv-~yA~~~gI~VIPeid~pGH~~~~l 94 (164)
.-|-++|+++..+|+|++.|.- .| |-... +++...==++|+-. ++ ++..+.|+.|.--.-+.+ +-|
T Consensus 17 ~nl~~l~~ri~~~~~~tV~Lqaf~d--~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvla---f~l 91 (294)
T PF14883_consen 17 RNLDKLIQRIKDMGINTVYLQAFAD--PDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLA---FDL 91 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeC--CCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhh---ccC
Confidence 3478899999999999998753 22 11111 33333334455544 34 677899999987665533 111
Q ss_pred c-Cccchhh---hcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 95 K-VKEFAKM---RQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 95 ~-~~~~~~l---~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
. .+..... +.......-|.|-+|++.+.|++|++++
T Consensus 92 p~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDL 131 (294)
T PF14883_consen 92 PKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDL 131 (294)
T ss_pred CCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHH
Confidence 1 1111111 1112234579999999999999999999
No 463
>PRK08363 alanine aminotransferase; Validated
Probab=33.53 E-value=53 Score=28.00 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..++.+++++|++.|+++|+-||
T Consensus 180 G~~~~~~~~~~l~~~a~~~~~~li 203 (398)
T PRK08363 180 GALYEKKTLKEILDIAGEHDLPVI 203 (398)
T ss_pred CcCcCHHHHHHHHHHHHHcCeEEE
Confidence 458899999999999999998776
No 464
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=33.49 E-value=2.7e+02 Score=23.01 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeccC--CCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 25 YLKEILPILAYTGATSLLIEWEDTL--PYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 25 ~lk~~i~~la~~k~N~l~l~~ed~~--p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
.+++.+......|+. ++..++.+| |+. +.++.+.+.++++-+.+.|++.|=--||-|.+.
T Consensus 115 ~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~------~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~ 176 (274)
T cd07938 115 RFEPVAELAKAAGLR-VRGYVSTAFGCPYE------GEVPPERVAEVAERLLDLGCDEISLGDTIGVAT 176 (274)
T ss_pred HHHHHHHHHHHCCCe-EEEEEEeEecCCCC------CCCCHHHHHHHHHHHHHcCCCEEEECCCCCccC
Confidence 344455555556553 445555443 333 356899999999999999999999999999884
No 465
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=33.47 E-value=1.8e+02 Score=26.56 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 19 ~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
...+++++.++...+...|++.+ .+.|+ .|.+++.++.+++...++.
T Consensus 150 p~~t~e~~~~~a~~l~~~Gad~I--~IkDt---------aGll~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 150 PIHTVEGFVEQAKRLLDMGADSI--CIKDM---------AALLKPQPAYDIVKGIKEA 196 (499)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE--EeCCC---------ccCCCHHHHHHHHHHHHHh
Confidence 45699999999999999999865 55665 3899999999999999875
No 466
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=33.41 E-value=1.4e+02 Score=27.86 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
.+.++++++.++.+.+...|++. |.+.|+ .|.+++.++.+++...++. +. +| |..=+|.
T Consensus 148 sp~~t~e~~~~~ak~l~~~Gad~--I~IkDt---------aG~l~P~~v~~lv~alk~~-~~-ip-i~~H~Hn 206 (596)
T PRK14042 148 SPVHTLDNFLELGKKLAEMGCDS--IAIKDM---------AGLLTPTVTVELYAGLKQA-TG-LP-VHLHSHS 206 (596)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCE--EEeCCc---------ccCCCHHHHHHHHHHHHhh-cC-CE-EEEEeCC
Confidence 56789999999999999999985 466665 3899999999999998875 23 33 5555554
No 467
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=33.15 E-value=31 Score=25.13 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccc
Q psy2349 62 RETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEF 99 (164)
Q Consensus 62 T~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~ 99 (164)
-.+-+.|+|.++.++|+..---|=.||-...++.-|+-
T Consensus 58 G~~ALaELv~wl~~~G~~f~EaVl~p~e~~~ll~~p~~ 95 (113)
T PF11432_consen 58 GERALAELVRWLQERGARFYEAVLSPSEFAALLELPPE 95 (113)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-GGGHHHHHTS-HH
T ss_pred HHHHHHHHHHHHHHcCCchhheecCHHHHHHHHcCCcH
Confidence 35678999999999999888889999999999886653
No 468
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=33.00 E-value=3e+02 Score=23.17 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=68.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHc----CCeEeeccC
Q psy2349 11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETEIFIILAAAESN----GLASIPLVP 85 (164)
Q Consensus 11 g~~lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~-~~~~~~yT~~dir~iv~yA~~~----gI~VIPeid 85 (164)
-|..|+-..|=.+..+.+.++.+...|+.+++||.. .+|-... ...+...+.+|..+=++.|++- .+-||--.|
T Consensus 75 PviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq-~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD 153 (285)
T TIGR02317 75 PLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQ-VLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTD 153 (285)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecC-CCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcC
Confidence 477888555555788899999999999999877764 3565444 4445577888877777666653 255667777
Q ss_pred CcchH---HHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 86 LYSDM---DFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 86 ~pGH~---~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
+.+.. +++-+...|.+... +.+-+--+.+.+-++.+.+++
T Consensus 154 a~~~~g~deAI~Ra~ay~~AGA-----D~vfi~g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 154 ARAVEGLDAAIERAKAYVEAGA-----DMIFPEALTSLEEFRQFAKAV 196 (285)
T ss_pred cccccCHHHHHHHHHHHHHcCC-----CEEEeCCCCCHHHHHHHHHhc
Confidence 76432 23333333433221 122222234455556666665
No 469
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=33.00 E-value=33 Score=30.58 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=22.4
Q ss_pred CCCHHHHH------HHHHHHHHcCCeEeeccCCcchH
Q psy2349 60 PFRETEIF------IILAAAESNGLASIPLVPLYSDM 90 (164)
Q Consensus 60 ~yT~~dir------~iv~yA~~~gI~VIPeid~pGH~ 90 (164)
.--..|+. +|++.|++.||+|+ |+-|||+
T Consensus 233 A~D~aQi~El~~lgeL~~rA~e~gVQvM--VEGPGHv 267 (423)
T TIGR00190 233 ATDRAQISELITLGELVERAREADVQCM--VEGPGHV 267 (423)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCeEE--EECCCCC
Confidence 34455555 46788999999998 6789998
No 470
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=32.99 E-value=1.2e+02 Score=26.87 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=44.8
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-eccCCcc
Q psy2349 14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-PLVPLYS 88 (164)
Q Consensus 14 lD~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI-Peid~pG 88 (164)
+|++=-+.+.+...+.++.+...|+..+.+.- ..|+-.+. . ..+.-++|+++|+++||+|+ | +++|
T Consensus 65 ~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi~s-~gf~e~g~---~---g~~~~~~l~~~a~~~girvlGP--nc~G 131 (447)
T TIGR02717 65 VDLAVIVVPAKYVPQVVEECGEKGVKGAVVIT-AGFKEVGE---E---GAELEQELVEIARKYGMRLLGP--NCLG 131 (447)
T ss_pred CCEEEEecCHHHHHHHHHHHHhcCCCEEEEEC-CCccccCc---c---hHHHHHHHHHHHHHcCCEEEec--Ceee
Confidence 46655556778889999999999998886633 23332221 0 12334789999999999988 5 4444
No 471
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=32.89 E-value=2.8e+02 Score=22.81 Aligned_cols=57 Identities=14% Similarity=-0.049 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV 84 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPei 84 (164)
-...+.++++++.+...|++++.+= |.......+|.+|-+++++.+.+..-.||.-+
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~--------GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gv 72 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVA--------GTTGLGPSLSFQEKLELLKAYSDITDKVIFQV 72 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEc--------ccCCCcccCCHHHHHHHHHHHHHHcCCEEEEe
Confidence 4567889999999999999998431 00112236777777777776666443444443
No 472
>PLN02389 biotin synthase
Probab=32.64 E-value=1.5e+02 Score=25.96 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHcCCeEee
Q psy2349 62 RETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 62 T~~dir~iv~yA~~~gI~VIP 82 (164)
|.++..+.++.|++.||.|-.
T Consensus 211 s~e~rl~ti~~a~~~Gi~v~s 231 (379)
T PLN02389 211 SYDDRLETLEAVREAGISVCS 231 (379)
T ss_pred CHHHHHHHHHHHHHcCCeEeE
Confidence 899999999999999998743
No 473
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=32.51 E-value=68 Score=30.74 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcCccchhhhcCCCCCCcccCCChhhHHHHHHHHHhc
Q psy2349 63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRM 130 (164)
Q Consensus 63 ~~dir~iv~yA~~~gI~VIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~p~~~~t~~~~~~l~~E~ 130 (164)
-..+.++++.++++|+.+|.-+|..+-++.+-....-..+..+-...-.+.+.+++|-+.+.+++.+-
T Consensus 433 Lp~L~~~La~~Rk~G~~~vlGiQs~aQL~~~YG~~~A~tI~~n~~Tkl~fr~~d~~tAe~~Sk~LGe~ 500 (732)
T PRK13700 433 LPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNTRAFFRSPSHKIAEFAAGEIGEK 500 (732)
T ss_pred chhHHHHHHHHHhcCCEEEEEeCCHHHHHHHhCHhHHHHHHhhcCcEEEEcCCChHHHHHHHHhcCcE
Confidence 45789999999999999999999999887654322111222222223357788889999999998777
No 474
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=32.48 E-value=80 Score=27.48 Aligned_cols=32 Identities=6% Similarity=0.094 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHH--cCCeEeecc--CCcchHH
Q psy2349 60 PFRETEIFIILAAAES--NGLASIPLV--PLYSDMD 91 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~--~gI~VIPei--d~pGH~~ 91 (164)
.+|.+++.+.++.+++ .||.+...+ -.||-+.
T Consensus 269 ~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ 304 (414)
T TIGR01579 269 KYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESE 304 (414)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCH
Confidence 5799999999999999 788765543 3466553
No 475
>PLN02672 methionine S-methyltransferase
Probab=32.45 E-value=51 Score=32.98 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..||.+++++|++.|+++|+.||
T Consensus 843 G~v~S~eeLe~Llela~k~di~VI 866 (1082)
T PLN02672 843 GLLYSNSEIEEILSVCAKYGARVI 866 (1082)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEE
Confidence 458999999999999999999877
No 476
>PRK08361 aspartate aminotransferase; Provisional
Probab=32.37 E-value=56 Score=27.78 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..++.+++++|++.|+++++-||
T Consensus 180 G~~~~~~~~~~l~~~~~~~~~~ii 203 (391)
T PRK08361 180 GATLDKEVAKAIADIAEDYNIYIL 203 (391)
T ss_pred CcCcCHHHHHHHHHHHHHcCeEEE
Confidence 568999999999999999999877
No 477
>KOG0465|consensus
Probab=32.33 E-value=20 Score=33.71 Aligned_cols=47 Identities=6% Similarity=0.007 Sum_probs=27.4
Q ss_pred CCChhhHHHHHHHHHhc-ccCCCCCeeeccCCccCCCC--CCCHHHHHHHH
Q psy2349 114 PNARSSLDLVFKMIGRM-RFVLGTPISPLFCPPSALNF--GTCRDDKISVV 161 (164)
Q Consensus 114 p~~~~t~~~~~~l~~E~-~lf~~s~~iHiGg~DE~~~~--~~~~~~~~~m~ 161 (164)
...++.++=+-+++... -++.++.--||=- ||+..- ..|.+||+.|-
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~-~eIP~~l~~~~~e~R~~LI 244 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRK-DEIPEDLEELAEEKRQALI 244 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEe-ccCCHHHHHHHHHHHHHHH
Confidence 34445555566666666 5555555555656 666642 56777776653
No 478
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=32.27 E-value=48 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHcCCeEee
Q psy2349 60 PFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~gI~VIP 82 (164)
.=|.+|+.+++++|++++|.+++
T Consensus 43 p~~~edv~~~l~~a~~~~ip~~v 65 (305)
T PRK12436 43 PTNYDEIQEVIKYANKYNIPVTF 65 (305)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE
Confidence 55999999999999999998887
No 479
>PLN02858 fructose-bisphosphate aldolase
Probab=32.11 E-value=1e+02 Score=31.67 Aligned_cols=25 Identities=24% Similarity=0.064 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcc
Q psy2349 64 TEIFIILAAAESNGLASIPLVPLYS 88 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~VIPeid~pG 88 (164)
+.-|+++++|..+||.|=-|+=.-|
T Consensus 1210 ~~t~~vv~~Ah~~gv~VEaElG~v~ 1234 (1378)
T PLN02858 1210 SYTKSISSLAHSKGLMVEAELGRLS 1234 (1378)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccC
Confidence 4578999999999999999875443
No 480
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=32.10 E-value=1.5e+02 Score=28.85 Aligned_cols=72 Identities=21% Similarity=0.152 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccC--------CCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTL--------PYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPL 86 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~--------p~~~~---~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~ 86 (164)
|.-++.+--+.+++.++.+|+..| |.+--| -|..- --+..-=..+=+..+++-++++|+-+|-.| +
T Consensus 13 ~~gFtF~~A~~~l~yl~~LGIShL--Y~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI-V 89 (889)
T COG3280 13 RGGFTFADARALLDYLADLGISHL--YLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI-V 89 (889)
T ss_pred cCCCCHHHHHHhhHHHHhcCchhe--eccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe-c
Confidence 446788889999999999999955 444211 11110 001112245778999999999999999887 6
Q ss_pred cchHHH
Q psy2349 87 YSDMDF 92 (164)
Q Consensus 87 pGH~~~ 92 (164)
|-||..
T Consensus 90 PNHMav 95 (889)
T COG3280 90 PNHMAV 95 (889)
T ss_pred ccchhc
Confidence 888863
No 481
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=31.89 E-value=57 Score=26.38 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 58 TNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 58 ~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
+..++.+++++|++.|+++|+-||
T Consensus 146 G~~~~~~~l~~l~~~~~~~~~~~i 169 (350)
T cd00609 146 GAVLSEEELEELAELAKKHGILII 169 (350)
T ss_pred CcccCHHHHHHHHHHHHhCCeEEE
Confidence 447889999999999999999887
No 482
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=31.88 E-value=2.3e+02 Score=23.06 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2349 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD 91 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIPeid~pGH~~ 91 (164)
+.+++.+......|+. +.+..++ ....+.+.+.++++-+.+.|+..|=--||-|.+.
T Consensus 114 ~~~~~~i~~a~~~G~~-v~~~~~~----------~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~ 170 (268)
T cd07940 114 ERAVEAVEYAKSHGLD-VEFSAED----------ATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLT 170 (268)
T ss_pred HHHHHHHHHHHHcCCe-EEEeeec----------CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCC
Confidence 4445555566666643 2222222 2357899999999999999999999999999984
No 483
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=31.87 E-value=50 Score=20.87 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHc
Q psy2349 60 PFRETEIFIILAAAESN 76 (164)
Q Consensus 60 ~yT~~dir~iv~yA~~~ 76 (164)
.+|.+|++.|++|=++.
T Consensus 74 ~ls~~e~~~l~ayl~sl 90 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRSL 90 (91)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 59999999999997764
No 484
>PTZ00445 p36-lilke protein; Provisional
Probab=31.86 E-value=1.2e+02 Score=24.76 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccC-C-CCCCCCCC--------CCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTL-P-YSLGFDNT--------NPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~-p-~~~~~~~~--------~~yT~~dir~iv~yA~~~gI~VI 81 (164)
.-.-+..+.+++.|...|++.+...++.|- + -+|.+..+ ...|+ |++.++.-+++.||.|+
T Consensus 25 ~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tp-efk~~~~~l~~~~I~v~ 95 (219)
T PTZ00445 25 LNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTP-DFKILGKRLKNSNIKIS 95 (219)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCH-HHHHHHHHHHHCCCeEE
Confidence 344567788999999999999988776652 2 11111111 12344 59999999999999986
No 485
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=31.84 E-value=93 Score=26.89 Aligned_cols=63 Identities=8% Similarity=-0.120 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee--ccCCcchHH
Q psy2349 28 EILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP--LVPLYSDMD 91 (164)
Q Consensus 28 ~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP--eid~pGH~~ 91 (164)
+.+..|...|+|.+.+-++..-+-....- +-.+|.+++.+.++.|++.++.|-- -+-+||-+.
T Consensus 105 e~L~~l~~~GvnrislGvQS~~d~vL~~l-~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~ 169 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGVQALNDADLRFL-GRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTL 169 (380)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCH
Confidence 44555566666666655543111111111 2367999999999999987765544 345677773
No 486
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=31.83 E-value=81 Score=24.03 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeec
Q psy2349 21 PSLTYLKEILPILAYTGATSLLIEWED 47 (164)
Q Consensus 21 ~~~~~lk~~i~~la~~k~N~l~l~~ed 47 (164)
+.++.||+|++.|...+++.|.+...+
T Consensus 1 Md~~~Ik~Li~~~~~s~l~elei~~~~ 27 (156)
T TIGR00531 1 MNIREIKELIKLIEESGITELELKEEE 27 (156)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 357889999999999999988766554
No 487
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.63 E-value=95 Score=25.73 Aligned_cols=31 Identities=0% Similarity=0.053 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEe-eccCCc
Q psy2349 57 NTNPFRETEIFIILAAAESNGLASI-PLVPLY 87 (164)
Q Consensus 57 ~~~~yT~~dir~iv~yA~~~gI~VI-Peid~p 87 (164)
.+.--|.++|.+|++.+++.||.+| .|=+.+
T Consensus 206 ~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~ 237 (287)
T cd01137 206 TEEEGTPKQVATLIEQVKKEKVPAVFVESTVN 237 (287)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 4567899999999999999999977 444433
No 488
>PRK15447 putative protease; Provisional
Probab=31.61 E-value=3e+02 Score=23.04 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCC-CHHHHHHHHHHHHHcCCe-EeeccCCcchHHHHhc
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPF-RETEIFIILAAAESNGLA-SIPLVPLYSDMDFVLK 95 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~y-T~~dir~iv~yA~~~gI~-VIPeid~pGH~~~~l~ 95 (164)
|..++.+.+++.++.+...|...+ +-+ .... ..+|+..+.++... ++. |+ +.-+|....+.+
T Consensus 42 R~~f~~~~l~e~v~~~~~~gkkvy-va~------------p~i~~~~~e~~~l~~~l~~-~~~~v~--v~d~g~l~~~~e 105 (301)
T PRK15447 42 RRELKVGDWLELAERLAAAGKEVV-LST------------LALVEAPSELKELRRLVEN-GEFLVE--ANDLGAVRLLAE 105 (301)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEE-EEe------------cccccCHHHHHHHHHHHhc-CCCEEE--EeCHHHHHHHHh
Confidence 456899999999999998875532 211 1222 25577777776655 322 22 566676665542
Q ss_pred C--ccchh-------------hhcCCCCCCcccCCChhhHHHHHHHHHh
Q psy2349 96 V--KEFAK-------------MRQNFNDTRFICPNARSSLDLVFKMIGR 129 (164)
Q Consensus 96 ~--~~~~~-------------l~~~~~~~~~l~p~~~~t~~~~~~l~~E 129 (164)
. |=... +.+ .....++++.+=+.+=|++|.+.
T Consensus 106 ~~~~l~~d~~lni~N~~a~~~l~~--~G~~rv~ls~ELsl~eI~~i~~~ 152 (301)
T PRK15447 106 RGLPFVAGPALNCYNAATLALLAR--LGATRWCMPVELSRDWLANLLAQ 152 (301)
T ss_pred cCCCEEEecccccCCHHHHHHHHH--cCCcEEEECCcCCHHHHHHHHHh
Confidence 1 10000 011 11245677777777767776543
No 489
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=31.55 E-value=42 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 59 NPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 59 ~~yT~~dir~iv~yA~~~gI~VI 81 (164)
..+|.+|.+.|++||+++||--+
T Consensus 235 e~ft~~da~~~~~fA~~~~l~~~ 257 (294)
T cd06543 235 EVFTLADAQTLVDFAKEKGLGRL 257 (294)
T ss_pred ceeeHHHHHHHHHHHHhCCCCeE
Confidence 48999999999999999998654
No 490
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=31.45 E-value=2.4e+02 Score=24.30 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy2349 16 LKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN 76 (164)
Q Consensus 16 ~~r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~ 76 (164)
..+...+.+.+.+.+..++..|++.+.|--... ......+.+.+++++.++.
T Consensus 98 ~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~---------p~~~~~e~l~eii~~Ik~~ 149 (366)
T TIGR02351 98 IKRKKLNEEEIEREIEAIKKSGFKEILLVTGES---------EKAAGVEYIAEAIKLAREY 149 (366)
T ss_pred CccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCC---------CCCCCHHHHHHHHHHHHHh
Confidence 455678999999999999999999887742211 1234566777777777765
No 491
>PRK10736 hypothetical protein; Provisional
Probab=31.44 E-value=92 Score=27.37 Aligned_cols=72 Identities=14% Similarity=0.006 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeeccCCC--------------CCC-------------CCCCCCCCHHHHHHHHHHHH
Q psy2349 22 SLTYLKEILPILAYTGATSLLIEWEDTLPY--------------SLG-------------FDNTNPFRETEIFIILAAAE 74 (164)
Q Consensus 22 ~~~~lk~~i~~la~~k~N~l~l~~ed~~p~--------------~~~-------------~~~~~~yT~~dir~iv~yA~ 74 (164)
....+++.+..+...|++.+.+. ++.||- .|. -+....|..+-.+.+++..+
T Consensus 56 ~~~~~~~~~~~~~~~~i~~i~~~-d~~YP~~L~~i~dpP~vLf~~G~~~~l~~~~iaiVGsR~~s~yg~~~~~~l~~~la 134 (374)
T PRK10736 56 PRKSLESTLRWLEQPNHHLLTAD-SEFYPPQLLAIADYPGALFVSGELAALHSPQLAVVGSRAHSWYGERWGRLFCEELA 134 (374)
T ss_pred CHHHHHHHHHHHHhcCCEEEccC-chhchHHHhhCCCCCeEEEEeCCHHHccCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34567777888888888765432 334552 222 13345888999999999999
Q ss_pred HcCCeEee----ccCCcchHHHHh
Q psy2349 75 SNGLASIP----LVPLYSDMDFVL 94 (164)
Q Consensus 75 ~~gI~VIP----eid~pGH~~~~l 94 (164)
+.|+.||- -||+-+|..++-
T Consensus 135 ~~g~~IVSGlA~GiD~~AH~~aL~ 158 (374)
T PRK10736 135 KNGLTITSGLARGIDGVAHRAALQ 158 (374)
T ss_pred HCCCEEECcchhhHHHHHHHHHHH
Confidence 99999998 899999998653
No 492
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=31.42 E-value=3.2e+02 Score=23.09 Aligned_cols=60 Identities=17% Similarity=0.056 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeeccC-CCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2349 20 PPSLTYLKEILPILAYTGATSLLIEWEDTL-PYSLGFDNTNPFRETEIFIILAAAESNGLASI 81 (164)
Q Consensus 20 ~~~~~~lk~~i~~la~~k~N~l~l~~ed~~-p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VI 81 (164)
--|.+.+.+.++.|..+++..+. +.+-+ |-..++.-..++++++...+-++|.+.|..-|
T Consensus 218 GETeee~~etl~~Lrelg~d~v~--igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v 278 (302)
T TIGR00510 218 GETNEEIKQTLKDLRDHGVTMVT--LGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHA 278 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEE--eecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChhe
Confidence 45566666666666666666442 22211 21222444568888888888888888876543
No 493
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=31.33 E-value=1.5e+02 Score=25.84 Aligned_cols=68 Identities=10% Similarity=0.001 Sum_probs=42.7
Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHH-------HhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2349 10 VLVHLDLKGAPPSLTYLKEILPIL-------AYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP 82 (164)
Q Consensus 10 Rg~~lD~~r~~~~~~~lk~~i~~l-------a~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~VIP 82 (164)
-.+|||=+..... +++..+++.+ -..|++++.+.-+. .||+-. .+--|+++++|..+||.|=-
T Consensus 90 ValHLDHg~~~~~-~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~-lp~eEN--------I~~TkevVe~Ah~~gvsVEa 159 (345)
T cd00946 90 VVLHTDHCAKKLL-PWFDGLLEADEEYFKQHGEPLFSSHMLDLSE-EPLEEN--------IEICKKYLERMAKINMWLEM 159 (345)
T ss_pred EEEECCCCCCccc-hhhHHHHHHHHHHHHHhccCCCceEEeeCCC-CCHHHH--------HHHHHHHHHHHHHcCCEEEE
Confidence 4678887653222 3444444433 25578877665442 455433 23478999999999999988
Q ss_pred ccCCc
Q psy2349 83 LVPLY 87 (164)
Q Consensus 83 eid~p 87 (164)
||=.-
T Consensus 160 ElG~i 164 (345)
T cd00946 160 EIGIT 164 (345)
T ss_pred Eeccc
Confidence 87544
No 494
>PRK06256 biotin synthase; Validated
Probab=31.24 E-value=82 Score=26.46 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2349 27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 27 k~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~V 80 (164)
.+.+..|+..|++.+.+-+|-+-.+-..+..+. |.++..+.++.|++.|+.|
T Consensus 152 ~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~--t~~~~i~~i~~a~~~Gi~v 203 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNLETSRSYFPNVVTTH--TYEDRIDTCEMVKAAGIEP 203 (336)
T ss_pred HHHHHHHHHhCCCEEecCCccCHHHHhhcCCCC--CHHHHHHHHHHHHHcCCee
No 495
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.19 E-value=57 Score=22.73 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2349 64 TEIFIILAAAESNGLASIPLVPLYSDMDF 92 (164)
Q Consensus 64 ~dir~iv~yA~~~gI~VIPeid~pGH~~~ 92 (164)
.|+.+++++|+++|+.||=--+..+..-.
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~ 95 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLA 95 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchh
Confidence 67888888999999999876666665533
No 496
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=30.95 E-value=2.4e+02 Score=23.52 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2349 18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS 80 (164)
Q Consensus 18 r~~~~~~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~gI~V 80 (164)
++..+.+.+.+-|+.+...|+..+.+..--. .-.+.+|+.+++++++++|+.|
T Consensus 138 ~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~----------~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 138 TGRDRLDQVLAGIDAALAAGLTPVKVNAVLM----------KGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCcEEEEEEEE----------CCCCHHHHHHHHHHHHhCCCeE
No 497
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.87 E-value=77 Score=28.24 Aligned_cols=64 Identities=8% Similarity=0.117 Sum_probs=34.8
Q ss_pred HHHHHHHHhcC--CCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCeEeec--cCCcchHH
Q psy2349 27 KEILPILAYTG--ATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN--GLASIPL--VPLYSDMD 91 (164)
Q Consensus 27 k~~i~~la~~k--~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~~--gI~VIPe--id~pGH~~ 91 (164)
.++++.|+..+ .+.+++-++..-+-....- +-.||.+++.++++.+++. ||.|--. +-.||-+.
T Consensus 248 ~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m-~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~ 317 (449)
T PRK14332 248 DHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEM-KRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETE 317 (449)
T ss_pred HHHHHHHHhCCCccceEEECCCcCCHHHHHhh-CCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCH
Confidence 45666676665 5555443322100000011 2358999999999999987 4543211 23366664
No 498
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=30.86 E-value=2.8e+02 Score=22.18 Aligned_cols=103 Identities=8% Similarity=0.003 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCCeEeeccCCcchHHHHhcCccchhh
Q psy2349 24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES-NGLASIPLVPLYSDMDFVLKVKEFAKM 102 (164)
Q Consensus 24 ~~lk~~i~~la~~k~N~l~l~~ed~~p~~~~~~~~~~yT~~dir~iv~yA~~-~gI~VIPeid~pGH~~~~l~~~~~~~l 102 (164)
+.+.++++.+...|...+.+ . ...-.|.+.+.++++..++ ..+-||-| ||..+.+..+-+. +
T Consensus 11 e~~~~ia~~v~~~gtDaI~V--G----------GS~gvt~~~~~~~v~~ik~~~~lPvilf---p~~~~~i~~~aD~--~ 73 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMV--G----------GSLGIVESNLDQTVKKIKKITNLPVILF---PGNVNGLSRYADA--V 73 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEE--c----------CcCCCCHHHHHHHHHHHHhhcCCCEEEE---CCCccccCcCCCE--E
Confidence 66788888999999998743 1 1123599999999999998 45667665 8877765543111 0
Q ss_pred hcCCCCCCcccCCChhh----HHHHHHHHHhc--ccCCCCCeeeccCCccCCC
Q psy2349 103 RQNFNDTRFICPNARSS----LDLVFKMIGRM--RFVLGTPISPLFCPPSALN 149 (164)
Q Consensus 103 ~~~~~~~~~l~p~~~~t----~~~~~~l~~E~--~lf~~s~~iHiGg~DE~~~ 149 (164)
.....||-.|+.= ....--+++++ ++.| .-|+=++. |....
T Consensus 74 ----~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip-~gYiv~~~-~~~v~ 120 (205)
T TIGR01769 74 ----FFMSLLNSADTYFIVGAQILGAITILKLNLEVIP-MAYLIVGP-GGAVG 120 (205)
T ss_pred ----EEEEeecCCCcchhhhHHHHHHHHHHHcCCcccc-eEEEEECC-CCcee
Confidence 1123455445432 11122235665 6787 89999988 87554
No 499
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=30.74 E-value=75 Score=28.13 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=21.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCe
Q psy2349 55 FDNTNPFRETEIFIILAAAESNGLA 79 (164)
Q Consensus 55 ~~~~~~yT~~dir~iv~yA~~~gI~ 79 (164)
..++.+||.+++|.|.+.|+++|.-
T Consensus 88 ~P~G~~~tteqLR~LaDiaekYGsG 112 (402)
T TIGR02064 88 QPSGKFYSTDYLRQLCDVWEKYGSG 112 (402)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 3455679999999999999999853
No 500
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.73 E-value=3.1e+02 Score=23.53 Aligned_cols=75 Identities=8% Similarity=0.011 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHH-HHHHcC--Ce----EeeccC-CcchHHHHhcCc-cch---h-hhcCCCCCCcccCCChhhHHH
Q psy2349 56 DNTNPFRETEIFIILA-AAESNG--LA----SIPLVP-LYSDMDFVLKVK-EFA---K-MRQNFNDTRFICPNARSSLDL 122 (164)
Q Consensus 56 ~~~~~yT~~dir~iv~-yA~~~g--I~----VIPeid-~pGH~~~~l~~~-~~~---~-l~~~~~~~~~l~p~~~~t~~~ 122 (164)
+....|..+++.+.+. |.++.| |. +||.++ ++-|+..+.+.- ... . +.-++.....+-+.+++.++-
T Consensus 227 pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~~~~~~~~~ps~e~l~~ 306 (342)
T PRK14454 227 PIANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNEVKENGFKKSSKEKIKK 306 (342)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCHHHHHH
Confidence 3346788888876664 455554 55 677776 899988764420 010 0 011111112334445666665
Q ss_pred HHHHHHhc
Q psy2349 123 VFKMIGRM 130 (164)
Q Consensus 123 ~~~l~~E~ 130 (164)
+.+++.+.
T Consensus 307 f~~~l~~~ 314 (342)
T PRK14454 307 FKNILKKN 314 (342)
T ss_pred HHHHHHHC
Confidence 66666665
Done!