RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2349
         (164 letters)



>gnl|CDD|119335 cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20)
           catalytic domain of N-acetyl-beta-D-glucosaminidase
           (GcnA, also known as BhsA) and related proteins. GcnA
           is an exoglucosidase which cleaves
           N-acetyl-beta-D-galactosamine (NAG) and
           N-acetyl-beta-D-galactosamine residues from
           4-methylumbelliferylated (4MU) substrates, as well as
           cleaving NAG from chito-oligosaccharides (i.e. NAG
           polymers).  In contrast, sulfated forms of the substrate
           are unable to be cleaved and act instead as mild
           competitive inhibitors. Additionally, the enzyme is
           known to be poisoned by several first-row transition
           metals as well as by mercury.  GcnA forms a homodimer
           with subunits comprised of three domains, an N-terminal
           zincin-like domain, this central catalytic GH20 domain,
           and a C-terminal alpha helical domain.  The GH20
           hexosaminidases are thought to act via a catalytic
           mechanism in which the catalytic nucleophile is not
           provided by solvent or the enzyme, but by the substrate
           itself.
          Length = 301

 Score =  102 bits (256), Expect = 6e-27
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 11  LVHLDLKG-APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEI 66
            VHLDLK  A P ++YLK++L +LA  GA  LL+ +EDT PY            + + EI
Sbjct: 3   GVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEI 62

Query: 67  FIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKM 126
             I   A   G+  IPL+     ++F+LK  EF  +R+  +  + +CP    + D + +M
Sbjct: 63  REIDDYAAELGIEVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEM 122

Query: 127 I 127
           I
Sbjct: 123 I 123


>gnl|CDD|201134 pfam00290, Trp_syntA, Tryptophan synthase alpha chain. 
          Length = 258

 Score = 27.6 bits (62), Expect = 2.5
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 29/80 (36%)

Query: 23  LTYLKEILPILAY-----------TGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILA 71
           +TY     P+L Y            G   L+I     LP     +  +P RE        
Sbjct: 92  MTYYN---PVLNYGIERFYAQAAEAGVDGLIIP---DLPP----EEADPLRE-------- 133

Query: 72  AAESNGLASIPLVPLYSDMD 91
           AAE +G+  I LV   +  +
Sbjct: 134 AAEKHGIDLIFLVAPTTSDE 153


>gnl|CDD|178211 PLN02601, PLN02601, beta-carotene hydroxylase.
          Length = 303

 Score = 27.7 bits (61), Expect = 3.1
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 118 SSLDLVFKMIGRMRFVLGTPISPLFCPPSALNFGTCRDDKISVVAF 163
           S++ +  K + R  F L  PIS    PPS L F   R  KI  V F
Sbjct: 6   STIAVTLKPLHRSDFRLNHPISLAVFPPS-LRFNGFRRRKILTVCF 50


>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4
           12-hydroxydehydrogenase/15-oxo-prostaglandin
           13-reductase.  Leukotriene B4 12-hydroxydehydrogenase is
           an NADP-dependent enzyme of arachidonic acid metabolism,
           responsible for converting leukotriene B4 to the much
           less active metabolite 12-oxo-leukotriene B4. The BRENDA
           database lists leukotriene B4 12-hydroxydehydrogenase as
           one of the synonyms of 2-alkenal reductase (EC
           1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin
           13-reductase.
          Length = 325

 Score = 26.9 bits (59), Expect = 5.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)

Query: 37  GATSLLIEWEDTLPYSLGF 55
               LL EW DTLP SL  
Sbjct: 98  DLEKLLTEWPDTLPLSLAL 116


>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
          Length = 524

 Score = 26.9 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 65  EIFIILAAAESNGLASIPLVPLYS--DMDFVLK 95
           E+ + + AA+  GL    L PL S  D  +VL+
Sbjct: 74  EVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLE 106


>gnl|CDD|185485 PTZ00156, PTZ00156, 60S ribosomal protein L11; Provisional.
          Length = 172

 Score = 25.8 bits (57), Expect = 8.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 94  LKVKEFAKMRQNFNDT 109
           LKVKEF   ++NF+DT
Sbjct: 83  LKVKEFELKKRNFSDT 98


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,561,245
Number of extensions: 789244
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 734
Number of HSP's successfully gapped: 14
Length of query: 164
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 74
Effective length of database: 6,945,742
Effective search space: 513984908
Effective search space used: 513984908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.0 bits)