RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2349
         (164 letters)



>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain
          {Pseudomonas amyloderamosa [TaxId: 32043]}
          Length = 475

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 7/54 (12%)

Query: 15 DLKGAPPSLTYLK-------EILPILAYTGATSLLIEWEDTLPYSLGFDNTNPF 61
             GA    +YL        E LP+       + ++   D      G+   N F
Sbjct: 41 TYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYF 94


>d1fd3a_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD2
           [TaxId: 9606]}
          Length = 41

 Score = 23.4 bits (50), Expect = 3.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 140 PLFCPPSALNFGTC 153
           P+FCP      GTC
Sbjct: 17  PVFCPRRYKQIGTC 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0494    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 612,421
Number of extensions: 26756
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 5
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.2 bits)