BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy235
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 24 SQKDFIYTCLNQDPNLRPRAGQLLFHAVL 52
S K+FI CLN+DP+ RP A +LL H +
Sbjct: 247 SFKEFIDACLNKDPSFRPTAKELLKHKFI 275
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 16 TIESLDDASQKDFIYTCLNQDPNLRPRAGQLLFHAVL 52
T+E K+F+ CLN+DP RP A +LL H +
Sbjct: 235 TLEGQHSKPFKEFVEACLNKDPRFRPTAKELLKHKFI 271
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLF 53
K+F+ CLN++P+ RP A +LL H +
Sbjct: 248 KEFVEACLNKEPSFRPTAKELLKHKFIL 275
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLF 53
K+F+ CLN++P+ RP A +LL H +
Sbjct: 233 KEFVEACLNKEPSFRPTAKELLKHKFIL 260
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLF 53
K+F+ CLN++P+ RP A +LL H +
Sbjct: 233 KEFVEACLNKEPSFRPTAKELLKHKFIL 260
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLF 53
K+F+ CLN++P+ RP A +LL H +
Sbjct: 253 KEFVEACLNKEPSFRPTAKELLKHKFIL 280
>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain
Length = 360
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 27 DFIYTCLNQDPNLRPRAGQLLFHAVL 52
DF+Y+ L DP LRP +LL H L
Sbjct: 334 DFLYSILQIDPTLRPSPAELLKHKFL 359
>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
pdb|4DSB|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
Length = 186
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 63 AHALVRHCSDPSNPNRVKYVFKMCHVHV 90
AHA+ R D +NPN+ K+ K C + V
Sbjct: 39 AHAIWRFVRDFANPNKYKHFIKSCTIRV 66
>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
pdb|3OJI|B Chain B, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
Length = 189
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 63 AHALVRHCSDPSNPNRVKYVFKMCHVHV 90
AHA+ R D +NPN+ K+ K C + V
Sbjct: 42 AHAIWRFVRDFANPNKYKHFIKSCTIRV 69
>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
pdb|4DSC|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
Length = 188
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 63 AHALVRHCSDPSNPNRVKYVFKMCHVHV 90
AHA+ R D +NPN+ K+ K C + V
Sbjct: 41 AHAIWRFVRDFANPNKYKHFIKSCTIRV 68
>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|3KLX|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|4DS8|A Chain A, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 209
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 63 AHALVRHCSDPSNPNRVKYVFKMCHVHV 90
AHA+ R D +NPN+ K+ K C + V
Sbjct: 62 AHAIWRFVRDFANPNKYKHFIKSCTIRV 89
>pdb|3TJ0|A Chain A, Crystal Structure Of Influenza B Virus Nucleoprotein
pdb|3TJ0|B Chain B, Crystal Structure Of Influenza B Virus Nucleoprotein
Length = 562
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 22/83 (26%)
Query: 117 PLIRPRAISPEQTDSVHSGTPE-------------------PFEVENRKVVNMMCNLKPK 157
P+IRP ++P + +PE P E++ + V NM+ L
Sbjct: 33 PIIRPATLAPPSNKRTRNPSPERATTSSEDDVGRKTQKKQTPTEIK-KSVYNMVVKL--G 89
Query: 158 EHSNELMILLRMNDKMNRQLTCN 180
E N++M+ +ND M R L N
Sbjct: 90 EFYNQMMVKAGLNDDMERNLIQN 112
>pdb|2IVF|A Chain A, Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
Length = 976
Score = 30.0 bits (66), Expect = 0.98, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 9 TEDHIRATIESLDDASQKDFIYTCLNQDPNLRPRAGQLLFHAVLF 53
T DHIR + D Q +Y L+Q+P R R+G +F VLF
Sbjct: 588 TNDHIRP---APDKTPQ---VYMLLSQNPMRRKRSGAKMFPDVLF 626
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLFEV---HALKLLSAHA 65
+DF+ L+++P RP A QLL H + + AL+ L A A
Sbjct: 253 RDFLKIALDKNPETRPSAAQLLEHPFVSSITSNKALRELVAEA 295
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLFEV---HALKLLSAHA 65
+DF+ L+++P RP A QLL H + + AL+ L A A
Sbjct: 245 RDFLKIALDKNPETRPSAAQLLEHPFVSSITSNKALRELVAEA 287
>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine
Phosphorylation Regulated Kinase 2 (Dyrk2)
Length = 429
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 16 TIESLDDASQKDFIYTCLNQDPNLRPRAGQLLFHAVL 52
++ DD DF+ CL DP +R GQ L H L
Sbjct: 376 ALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWL 412
>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine
Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex
With An Indirubin Ligand
Length = 429
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 16 TIESLDDASQKDFIYTCLNQDPNLRPRAGQLLFHAVL 52
++ DD DF+ CL DP +R GQ L H L
Sbjct: 376 ALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWL 412
>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41
Length = 417
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 16 TIESLDDASQKDFIYTCLNQDPNLRPRAGQLLFHAVL 52
++ DD DF+ CL DP +R GQ L H L
Sbjct: 376 ALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWL 412
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 24 SQKDFIYTCLNQDPNLRPRAGQLLFH 49
S + I CL +DP RP A +LL H
Sbjct: 263 SFRKMISLCLQKDPEKRPTAAELLRH 288
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 24 SQKDFIYTCLNQDPNLRPRAGQLLFH 49
S + I CL +DP RP A +LL H
Sbjct: 258 SFRKMISLCLQKDPEKRPTAAELLRH 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,612,221
Number of Sequences: 62578
Number of extensions: 259464
Number of successful extensions: 665
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 22
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)