RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy235
(226 letters)
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 56.6 bits (137), Expect = 8e-10
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 8 VTEDHIRATIESLDDASQKDFIYTCLNQDPNLRPRAGQLLFHAVLFE 54
VT A+ + + K+ I C+ Q+ + R LL HA E
Sbjct: 242 VTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE 288
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 42.0 bits (99), Expect = 6e-05
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLFEVHALKLLS 62
I L ++P R A +L L S
Sbjct: 287 AQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKS 323
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 41.9 bits (99), Expect = 6e-05
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 21 DDASQ--KDFIYTCLNQDPNLRPRAGQLLFH 49
+ S K FI C DP+ R A LL
Sbjct: 249 ESMSAEAKAFILKCFEPDPDKRACANDLLVD 279
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat
protein, ADA protein, ATP-binding, cell cycle, kinase,
nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo
sapiens} PDB: 2wtk_B*
Length = 389
Score = 39.9 bits (93), Expect = 4e-04
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
F+ CL ++P+ RP A LL H
Sbjct: 311 HHFVEQCLQRNPDARPSASTLLNH 334
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 5e-04
Identities = 42/272 (15%), Positives = 75/272 (27%), Gaps = 83/272 (30%)
Query: 11 DHIRATIESLDDASQKDFIYTCLNQDPN----------LRPRAGQLL--FHAVLFEVHAL 58
DHI I S D S ++ L LR L+ + +
Sbjct: 52 DHI---IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 59 KLLSAHALVRHCSDPS-----NPNRVK----------------YVFKMCHVH-------- 89
+ R +D N +R++ V +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKT 164
Query: 90 --VAEKL--EKFVEDVKYGIYPLTSYKAKKPPLI------RPRAISPEQTDSVHSGTPEP 139
+ K + + I+ L P + I P T +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 140 FEVEN-RKVVNMMCNLKPKEHSNELMILLRMNDK-----MNRQLTC---------NIVDS 184
+ + + + + LK K + N L++LL + + N L+C + D
Sbjct: 225 LRIHSIQAELRRL--LKSKPYENCLLVLLNVQNAKAWNAFN--LSCKILLTTRFKQVTDF 280
Query: 185 DNGSTLAQ-ELVHF--GFINDTDREKLSLLIQ 213
+ +T L H T E SLL++
Sbjct: 281 LSAATTTHISLDHHSMTL---TPDEVKSLLLK 309
Score = 38.7 bits (89), Expect = 0.001
Identities = 35/246 (14%), Positives = 71/246 (28%), Gaps = 79/246 (32%)
Query: 4 SGTLVT--EDHIRATIESLDDASQKDFIYTCLNQDPNLRPRAGQLLFHAVLFE--VHALK 59
+ L D I++ + + + K Y+ + + P + ++ E V
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPK----ESTISIPSIYLELKVKLEN 441
Query: 60 LLSAHA-LVRH--------CSDPSNPNRVKYVFK--MCHVHVAEKLEKFVE------DVK 102
+ H +V H D P +Y + H+ E E+ D +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 103 YGIYPLTSYKAKKPPLIRPRAISPEQTDSVHSGTPEPFEVENRKVVNMMCNLKP-KEHSN 161
+ + K IR H T + ++N + LK K +
Sbjct: 502 F-------LEQK----IR------------HDSTAWN---ASGSILNTLQQLKFYKPY-- 533
Query: 162 ELMILLRMNDKMNRQLTCNIVDSDNG-STLAQELVHFGFINDTD--REKLSLLIQETLQD 218
I D+D L ++ F + + K + L++ L
Sbjct: 534 -------------------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 219 PASSVL 224
++
Sbjct: 575 EDEAIF 580
Score = 32.1 bits (72), Expect = 0.16
Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 45/199 (22%)
Query: 32 CLNQDPNL--RPRAGQLLFHAVLFEVHALKLLSAHALVRHC----SDPSNPNRVKYVFKM 85
DPN R + + L+ L +C + N F +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNL 264
Query: 86 -CHVHVAEKLEKFVEDVKYGIYPLTSYKAKKPPLI-RPRAISPEQTDSVHSGTPEPFEVE 143
C + + + K V D L++ L ++P++ S+
Sbjct: 265 SCKILLTTR-FKQVTDF------LSAATTTHISLDHHSMTLTPDEVKSLLL--------- 308
Query: 144 NRKVVNMMCNLKPKEHSNELMILLRMNDKMNRQLTCNIVDSDNGSTLAQELVHFGFINDT 203
K ++ P+E +L N +I+ ++ L +
Sbjct: 309 --KYLDCRPQDLPRE-------VLTTN-----PRRLSII----AESIRDGLATWDNWKHV 350
Query: 204 DREKLSLLIQETL--QDPA 220
+ +KL+ +I+ +L +PA
Sbjct: 351 NCDKLTTIIESSLNVLEPA 369
Score = 31.7 bits (71), Expect = 0.20
Identities = 39/242 (16%), Positives = 67/242 (27%), Gaps = 66/242 (27%)
Query: 13 IRATIESLDDASQKDFIYTC--LNQDPNLRPRAGQLLFHAVLFEV--HALKLLSAHALVR 68
I +++ L+ A + ++ L++ V+ + L ++LV
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 69 HCSDPSNPNRVKYVFKMCHVHVAEKLE-------KFVEDVKYGIYPLTSYKAKKPPLIRP 121
P ++ + KLE V+ Y K
Sbjct: 419 -----KQPKESTISIPSIYLELKVKLENEYALHRSIVD----------HYNIPKT--FDS 461
Query: 122 RAISPEQTDSV-------HSGTPEPFEVENRKVVNMMCNLKPKEHSNELMILLR------ 168
+ P D H LK EH E M L R
Sbjct: 462 DDLIPPYLDQYFYSHIGHH--------------------LKNIEHP-ERMTLFRMVFLDF 500
Query: 169 --MNDKMNRQLTCNIVDSDNGSTLAQELVHFGFI--NDTDREKLSLLIQETLQDPASSVL 224
+ K+ T +TL Q + +I ND E+L I + L +++
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 225 SS 226
S
Sbjct: 561 CS 562
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 39.2 bits (92), Expect = 6e-04
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLFEVHALKLLSAH 64
+ + C+N DP RP + A L H
Sbjct: 268 RQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASSLEHH 306
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
3ggf_A* 2xik_A*
Length = 303
Score = 38.8 bits (91), Expect = 7e-04
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
K+F+ CLN++P+ RP A +LL H
Sbjct: 248 KEFVEACLNKEPSFRPTAKELLKH 271
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 38.8 bits (91), Expect = 7e-04
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
DF CL ++ RP +L+ H
Sbjct: 244 VDFTSQCLKKNSKERPTYPELMQH 267
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 38.9 bits (91), Expect = 7e-04
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
++F+ +CL + P RP + LL H
Sbjct: 283 RNFVDSCLQKIPQDRPTSEVLLKH 306
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 38.9 bits (91), Expect = 8e-04
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
DF+ CL + P R A QLL H
Sbjct: 256 TDFVKQCLVKSPEQRATATQLLQH 279
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Length = 303
Score = 38.8 bits (91), Expect = 8e-04
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+ I CL +DP RP A +LL H
Sbjct: 265 RKMISLCLQKDPEKRPTAAELLRH 288
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 38.9 bits (91), Expect = 8e-04
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+ FI +CL ++ + RP QL+ H
Sbjct: 264 QSFIESCLVKNHSQRPATEQLMKH 287
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 38.5 bits (90), Expect = 0.001
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
DF CL ++ RP +L+ H
Sbjct: 288 VDFTSQCLKKNSKERPTYPELMQH 311
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 38.1 bits (89), Expect = 0.001
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+DF+ L+++P RP A QLL H
Sbjct: 253 RDFLKIALDKNPETRPSAAQLLEH 276
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 38.1 bits (89), Expect = 0.001
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+ F+ CL +D RP+ +LL H
Sbjct: 261 QSFVKDCLTKDHRKRPKYNKLLEH 284
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 38.1 bits (89), Expect = 0.001
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVL 52
+ + ++ DP RP A L+ H+VL
Sbjct: 257 TELLKVMIHPDPERRPSAMALVKHSVL 283
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 37.7 bits (88), Expect = 0.002
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+DF+ L +DP R A +LL H
Sbjct: 272 RDFLERMLVRDPQERATAQELLDH 295
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP
complex, transferase; HET: ANP; 2.30A {Homo sapiens}
PDB: 3alo_A*
Length = 327
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+F+ CL +D + RP+ +LL H
Sbjct: 263 INFVNLCLTKDESKRPKYKELLKH 286
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 37.3 bits (87), Expect = 0.002
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+DF+ CL D R A +LL H
Sbjct: 247 RDFLNRCLEMDVEKRGSAKELLQH 270
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 36.1 bits (84), Expect = 0.005
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVL 52
+ + L DP LR A LL VL
Sbjct: 282 RSVLVMMLEPDPKLRATAEALLALPVL 308
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain,
kinase and RNAse function, ATP binding ssRNA
dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo
sapiens}
Length = 432
Score = 36.3 bits (84), Expect = 0.006
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+D ++ I + DP RP A +L H
Sbjct: 256 EDVIARELIEKMIAMDPQKRPSAKHVLKH 284
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 35.1 bits (81), Expect = 0.011
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+D + CL +DP R +LL H
Sbjct: 251 QDVLKCCLKRDPKQRISIPELLAH 274
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 35.2 bits (81), Expect = 0.013
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+DF+ CL ++P R QL+ H
Sbjct: 302 QDFVNKCLIKNPAERADLKQLMVH 325
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 34.6 bits (80), Expect = 0.016
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+D + CL +DP R +LL H
Sbjct: 270 QDVLKCCLKRDPKQRISIPELLAH 293
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 34.8 bits (80), Expect = 0.017
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+D + CL +DP R +LL H
Sbjct: 298 QDVLKCCLKRDPKQRISIPELLAH 321
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 34.7 bits (80), Expect = 0.019
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+ + ++P RP +L
Sbjct: 254 RSLVSQLFKRNPRDRPSVNSILEK 277
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 34.2 bits (79), Expect = 0.023
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 24 SQKDFIYTCLNQDPNLRPRAGQLLFH 49
+K I ++ DPN RP A LL
Sbjct: 259 VEKKIIRLLIDHDPNKRPGARTLLNS 284
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 33.8 bits (78), Expect = 0.035
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
K + L++ P RP ++L
Sbjct: 245 KTLLQKLLSKKPEDRPNTSEILRT 268
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 33.6 bits (77), Expect = 0.037
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
D I ++ DP RP A ++L H
Sbjct: 273 TDLISQMIDHDPLKRPTAMKVLRH 296
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 32.7 bits (75), Expect = 0.065
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 25 QKDFIYTCLNQDPNLRPRAGQLLFHAVLFEVH 56
+ + L+ P RP A ++ +AV ++
Sbjct: 256 EYVMVQDMLSPSPMERPEAINIIENAVFEDLD 287
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 32.7 bits (75), Expect = 0.067
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+ + + DP+ RP LL
Sbjct: 277 WQLLNSMMTVDPHQRPHIPLLLSQ 300
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase,
nucleus, meiosis, mitosis, cytoplasm, metal-binding,
phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB:
2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A*
2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A*
4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Length = 279
Score = 32.6 bits (75), Expect = 0.073
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+ I LN RP ++L +
Sbjct: 245 NEIITRMLNLKDYHRPSVEEILEN 268
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 32.2 bits (73), Expect = 0.10
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 25 QKDFIYTCLNQDPNLRPRAGQLLFHAVL 52
+ + L+ P RP A ++ +A+
Sbjct: 302 EHMMVQDMLSPSPTERPEATDIIENAIF 329
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 32.3 bits (74), Expect = 0.10
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+A KD + + DP R Q L H
Sbjct: 280 LNA--KDLVRKLIVLDPKKRLTTFQALQH 306
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 32.4 bits (74), Expect = 0.11
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
KD I L P++R A L H
Sbjct: 259 KDLIRKMLTYVPSMRISARDALDH 282
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 32.3 bits (74), Expect = 0.11
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 18 ESLDDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+SL+ D + L DP R + L H
Sbjct: 303 DSLEHVQLFDLMRRMLEFDPAQRITLAEALLH 334
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 32.4 bits (74), Expect = 0.12
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
K+ I L D N R A + L
Sbjct: 279 KELIKLMLTYDYNKRCTAEEALNS 302
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 32.0 bits (73), Expect = 0.13
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
KD I L P+LR A Q L H
Sbjct: 254 KDLIRKMLTFHPSLRITATQCLEH 277
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
autoinhibitory, ATP-binding, nucleotide phosphorylation,
serine/threonine-protein kinase; 2.00A {Mus musculus}
PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Length = 342
Score = 31.9 bits (73), Expect = 0.14
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
D A KD + L+ DP+ R A +L H
Sbjct: 252 DTA--KDLVSKMLHVDPHQRLTAALVLRH 278
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 32.0 bits (73), Expect = 0.14
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
KD I L D R A Q L H
Sbjct: 269 KDLIKQMLQFDSQRRISAQQALEH 292
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase,
kinase, membrane, ATP-binding, prenylation,
serine/threonine-protein kinase, alternative splicing;
HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Length = 304
Score = 31.8 bits (73), Expect = 0.14
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+ A KDFI L +DPN R + L H
Sbjct: 236 ESA--KDFICHLLEKDPNERYTCEKALSH 262
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK,
ATP-binding, metal-binding, NUCL binding,
serine/threonine-protein kinase, transferase; 2.00A
{Homo sapiens} PDB: 3kn5_A
Length = 325
Score = 31.9 bits (73), Expect = 0.15
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+A KD I L DPN R + L ++
Sbjct: 245 QEA--KDLIQGLLTVDPNKRLKMSGLRYN 271
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 31.5 bits (72), Expect = 0.18
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
++ K I L +P R + + H
Sbjct: 231 EEV--KMLIRNLLKTEPTQRMTITEFMNH 257
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
2hw6_A
Length = 316
Score = 31.1 bits (71), Expect = 0.26
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
KD I L +D R A Q+L H
Sbjct: 273 KDLISKLLVRDAKQRLSAAQVLQH 296
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 31.1 bits (71), Expect = 0.26
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 18 ESLDDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+ + DF+Y+ L DP LRP +LL H
Sbjct: 325 KIIKHELFCDFLYSILQIDPTLRPSPAELLKH 356
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 31.1 bits (71), Expect = 0.27
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 18 ESLDDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+ ++ D I L DP R + L H
Sbjct: 298 QDVEHERLFDLIQKMLEYDPAKRITLREALKH 329
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 31.1 bits (71), Expect = 0.27
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+A KD I L +P+ R A + L H
Sbjct: 242 PEA--KDLINKMLTINPSKRITAAEALKH 268
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 30.9 bits (70), Expect = 0.30
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHA 50
I L +P R +++
Sbjct: 279 HSLIRAMLQVNPEERLSIAEVVHQL 303
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 30.7 bits (70), Expect = 0.30
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+A DF+ L ++ R A + L H
Sbjct: 232 IEA--MDFVDRLLVKERKSRMTASEALQH 258
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 30.7 bits (70), Expect = 0.30
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
DDA KD I L P+LR A Q L H
Sbjct: 251 DDA--KDLIRKMLTFHPSLRITATQCLEH 277
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 30.7 bits (70), Expect = 0.30
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
D + L +DP RP A Q+L H
Sbjct: 256 VDLLKQMLTKDPERRPSAAQVLHH 279
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
PDB: 2qg5_A*
Length = 277
Score = 30.6 bits (70), Expect = 0.32
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+ I L + P R + Q L H
Sbjct: 239 ESLIRRLLTKSPKQRITSLQALEH 262
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 30.7 bits (70), Expect = 0.32
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
KD + L DP R + L H
Sbjct: 264 KDLVRRMLMLDPAERITVYEALNH 287
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 30.8 bits (69), Expect = 0.33
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLFEVHA 57
K I LN D R + + ++
Sbjct: 330 KTLIGRFLNFDRRRRLLPLEAMETPEFLQLQN 361
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 30.9 bits (70), Expect = 0.33
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
++ K I L +P R + + H
Sbjct: 296 EEV--KMLIRNLLKTEPTQRMTITEFMNH 322
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia
californica} SCOP: d.144.1.7
Length = 387
Score = 30.5 bits (69), Expect = 0.41
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+A KDFI L ++P R L H
Sbjct: 279 PEA--KDFIKNLLQKEPRKRLTVHDALEH 305
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine
kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing
protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB:
3lm0_A*
Length = 327
Score = 30.3 bits (69), Expect = 0.42
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
A DFI + L ++P RP A L H
Sbjct: 262 QLA--TDFIQSLLVKNPEKRPTAEICLSH 288
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo
sapiens} SCOP: b.40.4.4
Length = 172
Score = 29.7 bits (67), Expect = 0.45
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 138 EPFEVENRKVVNMMCNLKPKE---HSNELMILLRMNDKMNRQLTCNIVDSDNGS 188
E+++R VV ++CNLKP++ ++ M+L + +NRQ+ +D GS
Sbjct: 53 PKEELQDRLVV-VLCNLKPQKMRGVESQGMLLCASIEGINRQVE--PLDPPAGS 103
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Length = 336
Score = 30.0 bits (68), Expect = 0.51
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+DA K I L DP R Q + H
Sbjct: 262 EDA--KQLIRLLLKTDPTERLTITQFMNH 288
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3,
ZIP kinase, ZIPK, DAP kinase like kinase, DLK,
structural genomics consortium; HET: 7CP; 1.24A {Homo
sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A*
3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A*
3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A*
3dgk_A ...
Length = 283
Score = 29.8 bits (68), Expect = 0.54
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+ A KDFI L +DP R Q L H
Sbjct: 240 ELA--KDFIRRLLVKDPKRRMTIAQSLEH 266
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 30.2 bits (68), Expect = 0.54
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+D KDFI L DPN R Q L H
Sbjct: 385 EDG--KDFIRKLLLADPNTRMTIHQALEH 411
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 30.0 bits (68), Expect = 0.60
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
D + L DP R + L H
Sbjct: 377 LDLVKKLLVVDPKARFTTEEALRH 400
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated,
transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A*
2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Length = 362
Score = 30.0 bits (68), Expect = 0.61
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
K I + L +P R A Q L
Sbjct: 262 KSLIDSMLTVNPKKRITADQALKV 285
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 30.1 bits (68), Expect = 0.64
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
++A K+FI L ++ + R A + L H
Sbjct: 317 EEA--KEFISKLLIKEKSWRISASEALKH 343
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit;
HET: MES; 2.60A {Homo sapiens}
Length = 326
Score = 29.5 bits (67), Expect = 0.70
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
A KDFI L +DP R L H
Sbjct: 246 ALA--KDFIRRLLVKDPKKRMTIQDSLQH 272
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 29.7 bits (67), Expect = 0.70
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 17 IESLDDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
++ DD DF+ CL DP +R GQ L H
Sbjct: 377 LKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRH 409
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET:
AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Length = 361
Score = 29.6 bits (67), Expect = 0.72
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+ A KDFI L ++ R + L H
Sbjct: 247 ELA--KDFIRKLLVKETRKRLTIQEALRH 273
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding,
nucleotide-binding, serine/threonine-protein kinase,
transferase; HET: TPO; 1.72A {Caenorhabditis elegans}
PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Length = 284
Score = 29.4 bits (67), Expect = 0.81
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
K I + L +P R A Q L
Sbjct: 239 KSLIDSMLTVNPKKRITADQALKV 262
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase;
1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A
2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Length = 321
Score = 29.5 bits (67), Expect = 0.85
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+ A KDFI L ++ R + L H
Sbjct: 247 ELA--KDFIRKLLVKETRKRLTIQEALRH 273
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 29.3 bits (66), Expect = 0.90
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
DF+ L DP R AG L+ H
Sbjct: 311 SDFLSPMLQLDPRKRADAGGLVNH 334
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase,
serine/threonine-protein, ATP-binding,
calmodulin-binding; HET: ATP; 2.20A {Oryctolagus
cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Length = 298
Score = 29.2 bits (66), Expect = 1.0
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
KD + L P R A + L H
Sbjct: 261 KDLVSRFLVVQPQKRYTAEEALAH 284
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 29.3 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
KD I L DP R A Q L H
Sbjct: 337 KDLISRLLQVDPEARLTAEQALQH 360
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 28.9 bits (65), Expect = 1.2
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 18 ESLDDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
D KD I L+ DP R + L H
Sbjct: 342 TVADYLKFKDLILRMLDYDPKTRIQPYYALQH 373
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2
calmodulin-like EF...; structural genomics, protist
parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa
II}
Length = 345
Score = 28.6 bits (64), Expect = 1.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+D + LN++ + R A + L H
Sbjct: 308 RDLLSNLLNRNVDERFDAMRALQH 331
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 28.8 bits (64), Expect = 1.4
Identities = 3/24 (12%), Positives = 6/24 (25%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFH 49
+ + L R Q +
Sbjct: 337 RALLEGFLRYPKEDRLLPLQAMET 360
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 28.7 bits (64), Expect = 1.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 27 DFIYTCLNQDPNLRPRAGQLLFH 49
DF+ L P R A + L H
Sbjct: 370 DFLLPMLELIPEKRATAAECLRH 392
>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive
peptide activation, ascorbate, oxidoreductase; 1.70A
{Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2 PDB:
1sdw_A* 3mib_A 3mic_A 3mid_A 3mie_A 3mif_A 3mig_A 3mih_A
3mlj_A 3mlk_A 3mll_A 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A
1yjk_A
Length = 309
Score = 28.8 bits (63), Expect = 1.6
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 25 QKDFIYTCLNQDPNLRPRAGQLLFHAVLFEVHALKLLSAHALVRHCSDPSNPNRVKYVFK 84
++ Y C++ + + F+ A H L+ C+ PS+ + +
Sbjct: 28 KESDTYFCMSMRLPVDEE-----AFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYWFCDE 82
Query: 85 MCHVHVAEKLEKFVEDVKYGIYP 107
A L + + P
Sbjct: 83 GTCTDKANILYAWARNAPPTRLP 105
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 28.5 bits (63), Expect = 1.8
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 26 KDFIYTCLNQDPNLRPRAGQLLFHAVLFEVHALKLLSAHALVRHCSDPSNP 76
+ + L R Q + +E +L +A L + +P+
Sbjct: 341 RALLEGFLRYPKEDRLLPLQAMETP-EYEQLRTELSAALPLYQTDGEPTRE 390
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer,
anticancer drug design; HET: YCF; 1.77A {Homo sapiens}
PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A*
2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A*
2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Length = 322
Score = 28.4 bits (64), Expect = 2.1
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 21 DDASQKDFIYTCLNQDPNLRPRAGQLLFH 49
+ A D + L DP R + L H
Sbjct: 249 EKA--LDLVKKLLVVDPKARFTTEEALRH 275
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain,
OB-fold, tRNA synthetase complex, RNA binding protein;
1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Length = 171
Score = 27.7 bits (62), Expect = 2.1
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 136 TPEPFEVENRKVVNMMCNLKPKE---HSNELMIL 166
E +++NR V+ ++CNLKP + ++ M++
Sbjct: 49 PLE--QMQNRMVI-LLCNLKPAKMRGVLSQAMVM 79
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 27.7 bits (61), Expect = 2.9
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 13 IRATIESLDDASQK--DFIYTC-------LNQDPNLRPRAGQLL 47
+ +ES ++ +++ D I C L +DP L+P GQ++
Sbjct: 160 FQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIM 203
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding
fold, OB fold, beta- barrel; 1.87A {Escherichia coli}
SCOP: b.40.4.4 PDB: 3ers_X
Length = 111
Score = 26.4 bits (59), Expect = 3.7
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 136 TPEPFEVENRKVVNMMCNLKPK 157
+ E E+ + VV ++CNL+
Sbjct: 54 SEE--ELMGKTVV-VLCNLQKA 72
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 27.4 bits (61), Expect = 3.8
Identities = 12/63 (19%), Positives = 25/63 (39%)
Query: 80 KYVFKMCHVHVAEKLEKFVEDVKYGIYPLTSYKAKKPPLIRPRAISPEQTDSVHSGTPEP 139
KY + +C A KL + +E + G + S + +P+ ++ +
Sbjct: 123 KYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPV 182
Query: 140 FEV 142
FE+
Sbjct: 183 FEM 185
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta
barrel, dimerization domain, ligase; 2.01A {Pyrococcus
abyssi} SCOP: b.40.4.4
Length = 107
Score = 26.0 bits (58), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 136 TPEPFEVENRKVVNMMCNLKPK 157
PE E+ NR VV ++ NL+PK
Sbjct: 53 KPE--ELLNRYVV-VVANLEPK 71
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3
c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A
1bll_E* 2j9a_A* 2ewb_A*
Length = 484
Score = 26.9 bits (60), Expect = 6.5
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 87 HVHVAEKLEKFVEDVKYGIYPLTSYKAKKPPLIRPRAISPEQTDSVHSG 135
V + E G+Y K K+ ++ + E ++ G
Sbjct: 109 EVDPCGDAQAAAEGAVLGLYEYDDLKQKRKVVVSAKLHGSEDQEAWQRG 157
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A
3fgc_B*
Length = 324
Score = 26.6 bits (59), Expect = 7.3
Identities = 14/103 (13%), Positives = 21/103 (20%), Gaps = 13/103 (12%)
Query: 42 RAGQL---LFHAVLFEVHALKLLSAH---ALVRHCSDPSNPNRVKYVFKMCHVHVAEKLE 95
A +L L K + H D S V+ E
Sbjct: 182 WAAKLGLPLVFRWDDSNAQRKEYAGLYHEVAQAHGVDVSQVR----HKLTLLVNQNVDGE 237
Query: 96 KFVEDVKYGIYPLTSYKAKKPPLIRPRAISPEQTDSVHSGTPE 138
+ + L + + E GT E
Sbjct: 238 AARAEAR---VYLEEFVRESYSNTDFEQKMGELLSENAIGTYE 277
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 26.0 bits (58), Expect = 9.9
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 4 SGTLVTEDHIRATIESLDDASQKDFIYTCLNQDPNLRP 41
+ T +E+ R T + +T D + RP
Sbjct: 142 TLTGFSEEPSRGTHREILTTRANR-RHTIF--DLDYRP 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.386
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,305,779
Number of extensions: 188770
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 96
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)