Query psy2354
Match_columns 749
No_of_seqs 453 out of 2487
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 22:51:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1907|consensus 100.0 3E-158 6E-163 1323.9 32.8 619 18-652 22-1227(1320)
2 PLN03206 phosphoribosylformylg 100.0 7E-138 2E-142 1255.8 56.8 623 18-650 4-1212(1307)
3 TIGR01735 FGAM_synt phosphorib 100.0 4E-123 9E-128 1134.9 56.8 628 6-650 2-1220(1310)
4 PRK05297 phosphoribosylformylg 100.0 3E-115 6E-120 1069.9 56.0 616 3-651 1-1201(1290)
5 TIGR01857 FGAM-synthase phosph 100.0 6.8E-88 1.5E-92 813.5 51.0 586 9-650 8-1156(1239)
6 COG0046 PurL Phosphoribosylfor 100.0 6E-77 1.3E-81 681.2 26.7 369 176-742 140-555 (743)
7 TIGR01739 tegu_FGAM_synt herpe 100.0 8.5E-75 1.8E-79 708.7 44.5 422 201-650 236-1106(1202)
8 PHA03366 FGAM-synthase; Provis 100.0 4.7E-74 1E-78 704.3 44.8 415 201-650 326-1205(1304)
9 PRK14090 phosphoribosylformylg 100.0 2.9E-50 6.3E-55 461.3 20.2 306 215-740 174-484 (601)
10 PRK01213 phosphoribosylformylg 100.0 1.1E-45 2.5E-50 438.9 24.6 365 171-740 121-530 (724)
11 PLN03206 phosphoribosylformylg 100.0 1.1E-41 2.5E-46 415.7 22.4 368 280-749 371-799 (1307)
12 TIGR01735 FGAM_synt phosphorib 100.0 3.9E-40 8.5E-45 404.9 19.6 367 281-749 374-811 (1310)
13 TIGR01857 FGAM-synthase phosph 100.0 1.5E-38 3.3E-43 385.6 21.7 354 280-739 386-785 (1239)
14 PRK05297 phosphoribosylformylg 100.0 9.4E-39 2E-43 394.1 20.2 367 281-749 368-792 (1290)
15 TIGR01736 FGAM_synth_II phosph 100.0 8.2E-38 1.8E-42 371.8 23.6 368 171-740 109-521 (715)
16 KOG1907|consensus 99.9 1E-27 2.3E-32 271.9 16.1 318 296-749 478-810 (1320)
17 TIGR01739 tegu_FGAM_synt herpe 99.9 6.7E-24 1.5E-28 261.5 19.3 99 646-749 591-689 (1202)
18 PHA03366 FGAM-synthase; Provis 99.9 2.6E-24 5.7E-29 266.0 15.2 103 646-749 687-789 (1304)
19 COG0047 PurL Phosphoribosylfor 99.9 2.7E-24 5.9E-29 216.8 8.8 101 533-651 52-153 (231)
20 PF13507 GATase_5: CobB/CobQ-l 99.9 2.9E-24 6.2E-29 225.6 9.3 111 535-649 57-168 (259)
21 COG0046 PurL Phosphoribosylfor 99.9 2.4E-23 5.2E-28 240.4 10.9 190 280-486 160-381 (743)
22 PRK01175 phosphoribosylformylg 99.8 3.5E-19 7.6E-24 187.7 10.0 110 535-649 59-168 (261)
23 cd02203 PurL_repeat1 PurL subu 99.8 2.6E-18 5.6E-23 186.1 15.2 202 160-365 51-305 (313)
24 cd02193 PurL Formylglycinamide 99.7 3.8E-17 8.2E-22 173.7 8.9 134 215-354 134-271 (272)
25 PRK14090 phosphoribosylformylg 99.6 2E-15 4.4E-20 174.6 5.1 187 282-486 120-337 (601)
26 cd02193 PurL Formylglycinamide 99.5 7.3E-15 1.6E-19 156.3 6.9 91 649-742 2-94 (272)
27 PRK03619 phosphoribosylformylg 99.5 5.9E-14 1.3E-18 144.9 9.1 97 536-650 53-150 (219)
28 cd01740 GATase1_FGAR_AT Type 1 99.5 6.3E-14 1.4E-18 146.4 7.8 99 535-650 54-157 (238)
29 PRK01213 phosphoribosylformylg 99.4 4.4E-13 9.5E-18 160.6 6.7 188 282-486 148-366 (724)
30 TIGR01737 FGAM_synth_I phospho 99.3 2.9E-12 6.3E-17 133.0 9.0 85 553-650 64-149 (227)
31 PF02769 AIRS_C: AIR synthase 99.3 3.8E-13 8.2E-18 129.9 0.3 136 224-365 12-152 (153)
32 cd02204 PurL_repeat2 PurL subu 99.2 3E-11 6.4E-16 127.6 7.4 92 647-740 12-104 (264)
33 TIGR01736 FGAM_synth_II phosph 99.0 7.6E-10 1.7E-14 132.8 9.4 108 246-365 582-691 (715)
34 PF00586 AIRS: AIR synthase re 98.9 8.6E-10 1.9E-14 99.1 4.8 67 662-733 30-96 (96)
35 cd02203 PurL_repeat1 PurL subu 98.8 2.7E-09 5.9E-14 115.9 4.1 85 649-738 27-122 (313)
36 cd00396 PurM-like AIR (aminoim 98.8 7.7E-09 1.7E-13 106.6 5.2 85 650-739 2-86 (222)
37 TIGR03267 methan_mark_2 putati 98.6 8.1E-08 1.8E-12 105.0 9.1 114 248-366 191-306 (323)
38 cd00396 PurM-like AIR (aminoim 98.6 2.9E-08 6.3E-13 102.3 3.2 91 260-354 125-222 (222)
39 cd02204 PurL_repeat2 PurL subu 98.5 1.7E-07 3.8E-12 99.0 6.7 99 245-355 164-264 (264)
40 TIGR03267 methan_mark_2 putati 98.5 2.4E-07 5.3E-12 101.3 7.1 111 605-735 25-136 (323)
41 cd02192 PurM-like3 AIR synthas 98.5 3.4E-07 7.4E-12 98.3 8.0 81 649-737 47-128 (283)
42 cd02194 ThiL ThiL (Thiamine-mo 98.4 4.7E-07 1E-11 97.2 7.3 84 649-737 36-123 (291)
43 cd02195 SelD Selenophosphate s 98.3 5.2E-07 1.1E-11 97.0 5.8 82 649-736 54-138 (287)
44 PRK05731 thiamine monophosphat 98.3 8.7E-07 1.9E-11 96.5 6.7 82 650-736 39-125 (318)
45 TIGR01379 thiL thiamine-monoph 98.2 1.5E-06 3.2E-11 94.8 6.7 84 649-737 37-124 (317)
46 cd02196 PurM PurM (Aminoimidaz 98.2 2.7E-06 5.8E-11 91.9 8.0 110 246-356 175-297 (297)
47 PLN02557 phosphoribosylformylg 98.2 2E-06 4.3E-11 95.6 5.9 112 244-362 254-377 (379)
48 cd02196 PurM PurM (Aminoimidaz 98.0 4.6E-06 1E-10 90.1 4.6 81 648-734 20-105 (297)
49 cd02197 HypE HypE (Hydrogenase 98.0 8.3E-06 1.8E-10 87.9 5.4 68 666-738 56-123 (293)
50 cd06061 PurM-like1 AIR synthas 97.9 4.5E-06 9.7E-11 89.9 2.1 80 273-355 209-298 (298)
51 cd02192 PurM-like3 AIR synthas 97.9 1.3E-05 2.7E-10 86.3 5.1 99 251-354 183-283 (283)
52 TIGR02124 hypE hydrogenase exp 97.9 3.1E-05 6.7E-10 84.6 8.1 104 272-387 196-313 (320)
53 TIGR00878 purM phosphoribosyla 97.9 2E-05 4.3E-10 86.7 6.4 103 249-357 211-331 (332)
54 TIGR02124 hypE hydrogenase exp 97.8 3.5E-05 7.5E-10 84.2 7.6 68 665-737 50-117 (320)
55 PF02769 AIRS_C: AIR synthase 97.7 2.5E-05 5.3E-10 75.4 4.1 71 397-470 76-151 (153)
56 PRK05731 thiamine monophosphat 97.7 2.5E-05 5.5E-10 85.1 3.2 86 273-359 205-299 (318)
57 TIGR01379 thiL thiamine-monoph 97.6 3.2E-05 7E-10 84.3 3.5 88 273-365 204-301 (317)
58 cd06061 PurM-like1 AIR synthas 97.6 4.6E-05 1E-09 82.1 4.6 68 665-737 56-123 (298)
59 cd02195 SelD Selenophosphate s 97.6 5.7E-05 1.2E-09 81.3 4.7 73 271-355 213-287 (287)
60 COG0309 HypE Hydrogenase matur 97.6 6.1E-05 1.3E-09 81.6 4.7 148 221-387 170-332 (339)
61 PRK05385 phosphoribosylaminoim 97.6 7.3E-05 1.6E-09 82.0 5.3 92 262-355 225-327 (327)
62 TIGR00878 purM phosphoribosyla 97.6 6.3E-05 1.4E-09 82.7 4.6 65 664-734 72-137 (332)
63 PRK00943 selenophosphate synth 97.5 8.8E-05 1.9E-09 82.1 5.1 87 271-357 219-336 (347)
64 COG2144 Selenophosphate synthe 97.5 0.00011 2.4E-09 77.7 4.8 122 256-391 194-318 (324)
65 cd02197 HypE HypE (Hydrogenase 97.4 0.00019 4.2E-09 77.4 5.3 93 257-355 189-293 (293)
66 cd02691 PurM-like2 AIR synthas 97.3 0.00046 1E-08 76.4 6.8 91 271-365 211-313 (346)
67 TIGR00302 phosphoribosylformyl 97.2 0.0011 2.4E-08 58.0 6.7 61 78-138 4-69 (80)
68 PRK06423 phosphoribosylformylg 97.1 0.0012 2.7E-08 56.7 6.7 58 78-138 4-63 (73)
69 PRK05385 phosphoribosylaminoim 97.1 0.0005 1.1E-08 75.4 4.5 65 664-734 73-137 (327)
70 PRK05974 phosphoribosylformylg 97.0 0.0015 3.3E-08 57.2 6.4 61 78-138 4-69 (80)
71 PRK13526 glutamine amidotransf 96.9 0.00089 1.9E-08 67.3 4.6 55 549-617 55-113 (179)
72 TIGR00476 selD selenium donor 96.5 0.0046 9.9E-08 68.5 6.4 81 649-736 63-145 (347)
73 PRK00943 selenophosphate synth 96.0 0.015 3.3E-07 64.4 7.7 79 650-733 63-141 (347)
74 cd02691 PurM-like2 AIR synthas 96.0 0.011 2.3E-07 65.7 6.3 68 662-735 61-129 (346)
75 cd02194 ThiL ThiL (Thiamine-mo 95.9 0.0058 1.3E-07 65.7 3.3 81 272-356 202-291 (291)
76 PF02700 PurS: Phosphoribosylf 95.6 0.027 5.8E-07 49.5 5.6 46 78-123 4-49 (80)
77 PF12818 Tegument_dsDNA: dsDNA 95.4 0.075 1.6E-06 57.3 9.4 114 247-361 143-282 (282)
78 PRK14105 selenophosphate synth 95.0 0.023 4.9E-07 63.0 4.4 88 272-359 235-330 (345)
79 PRK14105 selenophosphate synth 95.0 0.042 9E-07 60.9 6.2 80 650-735 60-140 (345)
80 COG2144 Selenophosphate synthe 94.8 0.042 9E-07 58.7 5.4 73 397-473 227-303 (324)
81 COG0309 HypE Hydrogenase matur 93.5 0.12 2.7E-06 56.5 5.9 82 397-482 237-332 (339)
82 PRK13527 glutamine amidotransf 93.1 0.22 4.7E-06 50.8 6.6 32 552-584 62-93 (200)
83 COG0518 GuaA GMP synthase - Gl 92.4 0.19 4E-06 51.6 5.0 63 565-645 76-140 (198)
84 TIGR00476 selD selenium donor 92.2 0.2 4.2E-06 55.6 5.3 84 272-355 231-346 (347)
85 PRK06278 cobyrinic acid a,c-di 91.3 0.44 9.5E-06 55.2 7.1 25 556-584 57-81 (476)
86 PRK13181 hisH imidazole glycer 90.0 0.31 6.8E-06 49.6 3.9 74 555-643 60-145 (199)
87 TIGR03800 PLP_synth_Pdx2 pyrid 89.7 0.34 7.3E-06 49.0 3.9 32 552-584 55-86 (184)
88 PRK13152 hisH imidazole glycer 89.4 0.72 1.6E-05 47.1 6.0 80 556-643 61-148 (201)
89 cd01750 GATase1_CobQ Type 1 gl 89.3 0.22 4.9E-06 50.6 2.3 31 553-584 58-88 (194)
90 PLN02832 glutamine amidotransf 89.3 0.38 8.3E-06 51.0 4.0 35 549-584 54-88 (248)
91 PLN02557 phosphoribosylformylg 89.2 0.86 1.9E-05 51.3 6.9 66 663-734 116-182 (379)
92 COG0611 ThiL Thiamine monophos 89.2 0.6 1.3E-05 51.2 5.5 66 663-734 57-123 (317)
93 PRK13143 hisH imidazole glycer 89.0 0.67 1.4E-05 47.3 5.5 29 555-584 59-87 (200)
94 cd01741 GATase1_1 Subgroup of 88.5 1.4 3.1E-05 44.0 7.4 74 555-645 69-144 (188)
95 COG0118 HisH Glutamine amidotr 88.3 0.79 1.7E-05 47.0 5.3 59 555-632 62-138 (204)
96 COG1828 PurS Phosphoribosylfor 87.8 1.9 4E-05 38.2 6.6 46 78-123 5-50 (83)
97 PRK05783 hypothetical protein; 87.5 2 4.4E-05 38.1 6.7 46 78-123 6-51 (84)
98 CHL00188 hisH imidazole glycer 86.8 0.47 1E-05 49.1 2.8 79 555-644 62-155 (210)
99 cd03130 GATase1_CobB Type 1 gl 86.8 0.53 1.2E-05 48.0 3.2 35 549-584 57-91 (198)
100 PLN02617 imidazole glycerol ph 86.7 1.3 2.8E-05 52.1 6.7 32 551-583 63-94 (538)
101 PRK05665 amidotransferase; Pro 86.2 1.8 4E-05 45.7 6.9 69 556-644 80-150 (240)
102 PRK13146 hisH imidazole glycer 86.0 0.78 1.7E-05 47.3 3.9 84 556-644 65-154 (209)
103 TIGR00888 guaA_Nterm GMP synth 85.5 1.7 3.6E-05 43.8 5.9 62 566-645 68-129 (188)
104 PRK09065 glutamine amidotransf 84.9 1.9 4.1E-05 45.4 6.2 70 556-644 77-150 (237)
105 PRK06490 glutamine amidotransf 84.3 2.6 5.5E-05 44.5 6.9 27 556-583 75-101 (239)
106 PRK14004 hisH imidazole glycer 84.2 0.55 1.2E-05 48.6 1.8 29 554-583 59-87 (210)
107 PRK13142 hisH imidazole glycer 84.1 0.61 1.3E-05 47.6 2.1 26 556-584 61-86 (192)
108 PLN02347 GMP synthetase 83.3 2 4.4E-05 50.6 6.2 68 560-644 78-146 (536)
109 cd01742 GATase1_GMP_Synthase T 83.3 2.2 4.7E-05 42.4 5.7 60 567-644 69-128 (181)
110 cd01749 GATase1_PB Glutamine A 83.3 1.2 2.7E-05 44.7 3.9 31 552-583 54-84 (183)
111 PF07685 GATase_3: CobB/CobQ-l 82.2 1.1 2.3E-05 44.1 2.9 37 546-583 21-57 (158)
112 TIGR00379 cobB cobyrinic acid 81.9 1.2 2.6E-05 51.3 3.5 37 546-583 300-336 (449)
113 PRK13141 hisH imidazole glycer 81.6 2 4.4E-05 43.9 4.7 80 555-643 60-147 (205)
114 PRK00074 guaA GMP synthase; Re 81.6 2.1 4.5E-05 50.2 5.4 61 567-645 74-134 (511)
115 KOG3939|consensus 81.4 1.6 3.5E-05 45.8 3.9 71 662-732 26-96 (312)
116 TIGR01855 IMP_synth_hisH imida 81.1 2.6 5.7E-05 42.8 5.3 72 558-644 61-144 (196)
117 TIGR00566 trpG_papA glutamine 80.3 3.9 8.4E-05 41.4 6.2 60 566-644 70-130 (188)
118 PRK13525 glutamine amidotransf 78.5 1.9 4.1E-05 43.7 3.3 29 554-583 59-87 (189)
119 PF00117 GATase: Glutamine ami 78.5 1.9 4.1E-05 43.2 3.3 25 557-582 62-86 (192)
120 PLN02335 anthranilate synthase 78.1 2.8 6E-05 43.7 4.5 18 566-583 89-106 (222)
121 PRK00758 GMP synthase subunit 77.3 1.4 3.1E-05 44.1 2.1 65 562-644 61-125 (184)
122 COG0611 ThiL Thiamine monophos 77.2 7.2 0.00016 43.0 7.5 74 397-475 220-305 (317)
123 cd01748 GATase1_IGP_Synthase T 76.7 1.6 3.5E-05 44.2 2.3 83 553-644 57-147 (198)
124 KOG1622|consensus 76.4 1.9 4E-05 49.0 2.7 58 568-644 88-148 (552)
125 PRK06423 phosphoribosylformylg 76.2 12 0.00027 32.1 7.2 52 10-64 11-67 (73)
126 PRK08250 glutamine amidotransf 76.1 7.3 0.00016 40.9 7.0 69 556-644 73-145 (235)
127 PRK05974 phosphoribosylformylg 75.3 12 0.00025 32.8 6.9 59 5-64 7-73 (80)
128 PRK07567 glutamine amidotransf 70.3 3.6 7.7E-05 43.5 3.0 18 566-583 91-108 (242)
129 PRK06895 putative anthranilate 69.9 3.7 8E-05 41.5 2.9 25 557-583 63-87 (190)
130 cd01745 GATase1_2 Subgroup of 69.8 3.2 7E-05 41.9 2.5 26 557-583 90-115 (189)
131 cd01744 GATase1_CPSase Small c 68.9 4.3 9.4E-05 40.5 3.2 27 556-583 58-84 (178)
132 cd01746 GATase1_CTP_Synthase T 68.1 3.8 8.2E-05 43.2 2.6 23 559-582 76-98 (235)
133 TIGR00313 cobQ cobyric acid sy 67.2 3.9 8.4E-05 47.5 2.7 34 549-583 301-334 (475)
134 COG1973 HypE Hydrogenase matur 67.1 9.9 0.00022 41.8 5.5 85 651-746 126-210 (449)
135 PRK06774 para-aminobenzoate sy 65.6 4.2 9.1E-05 41.1 2.3 17 567-583 71-87 (191)
136 COG0150 PurM Phosphoribosylami 65.1 8.2 0.00018 42.7 4.5 39 422-460 296-334 (345)
137 PRK01077 cobyrinic acid a,c-di 64.7 5.7 0.00012 45.8 3.4 36 547-583 302-337 (451)
138 TIGR00302 phosphoribosylformyl 64.1 31 0.00066 30.2 7.1 59 5-64 7-73 (80)
139 cd03134 GATase1_PfpI_like A ty 61.5 9.3 0.0002 37.1 3.8 37 551-588 78-114 (165)
140 PRK13170 hisH imidazole glycer 61.1 5.2 0.00011 40.8 2.0 68 568-643 70-144 (196)
141 cd01743 GATase1_Anthranilate_S 60.2 6.6 0.00014 39.3 2.6 24 559-583 63-86 (184)
142 PF07722 Peptidase_C26: Peptid 60.1 7.3 0.00016 40.4 3.0 24 559-582 97-120 (217)
143 PRK07053 glutamine amidotransf 60.1 8.1 0.00017 40.6 3.3 27 556-583 72-98 (234)
144 COG0150 PurM Phosphoribosylami 58.7 6.5 0.00014 43.4 2.3 57 671-733 83-139 (345)
145 PRK00784 cobyric acid synthase 58.1 8.1 0.00018 45.0 3.2 35 549-584 307-341 (488)
146 CHL00101 trpG anthranilate syn 57.9 7.6 0.00016 39.3 2.6 23 560-583 65-87 (190)
147 PRK07765 para-aminobenzoate sy 56.3 8.1 0.00018 40.0 2.5 24 559-583 68-91 (214)
148 PRK13896 cobyrinic acid a,c-di 56.0 9.2 0.0002 44.0 3.1 30 552-583 294-323 (433)
149 cd03169 GATase1_PfpI_1 Type 1 55.3 13 0.00028 37.0 3.7 36 552-588 93-128 (180)
150 COG0512 PabA Anthranilate/para 55.0 9.8 0.00021 38.9 2.8 26 556-583 64-89 (191)
151 cd01747 GATase1_Glutamyl_Hydro 53.9 10 0.00022 40.9 2.8 15 569-583 93-107 (273)
152 PLN02327 CTP synthase 53.9 8.2 0.00018 45.5 2.3 20 563-582 386-405 (557)
153 PRK05670 anthranilate synthase 53.6 10 0.00022 38.2 2.7 17 567-583 71-87 (189)
154 PRK07649 para-aminobenzoate/an 53.2 9.8 0.00021 38.8 2.5 17 567-583 71-87 (195)
155 PF13278 DUF4066: Putative ami 53.2 12 0.00025 36.6 3.0 38 550-588 76-113 (166)
156 PF01174 SNO: SNO glutamine am 53.0 27 0.00059 35.7 5.5 73 546-621 46-119 (188)
157 PRK11366 puuD gamma-glutamyl-g 51.0 10 0.00022 40.3 2.4 16 567-582 106-121 (254)
158 TIGR01368 CPSaseIIsmall carbam 51.0 12 0.00027 41.9 3.0 25 557-583 234-258 (358)
159 PRK08007 para-aminobenzoate sy 50.7 8.2 0.00018 39.0 1.5 17 567-583 71-87 (187)
160 cd03140 GATase1_PfpI_3 Type 1 50.4 18 0.00038 35.7 3.7 36 552-588 76-111 (170)
161 cd03132 GATase1_catalase Type 50.0 18 0.00039 34.3 3.6 43 546-589 74-116 (142)
162 cd01653 GATase1 Type 1 glutami 49.4 19 0.00042 30.5 3.5 29 552-581 64-92 (115)
163 PRK08857 para-aminobenzoate sy 49.4 12 0.00026 37.9 2.4 17 567-583 71-87 (193)
164 PRK12564 carbamoyl phosphate s 49.0 15 0.00033 41.3 3.3 27 556-583 237-263 (360)
165 PRK05637 anthranilate synthase 48.8 14 0.0003 38.2 2.8 17 567-583 72-88 (208)
166 cd03128 GAT_1 Type 1 glutamine 48.3 19 0.00042 28.9 3.2 29 552-581 64-92 (92)
167 KOG1224|consensus 47.7 11 0.00023 43.9 1.8 21 563-583 90-110 (767)
168 CHL00197 carA carbamoyl-phosph 46.3 16 0.00035 41.3 3.1 26 557-583 253-278 (382)
169 PF07236 Phytoreo_S7: Phytoreo 45.7 6.9 0.00015 44.3 0.0 57 201-257 107-178 (506)
170 PRK06186 hypothetical protein; 45.5 14 0.0003 39.0 2.2 20 563-582 77-96 (229)
171 PRK12838 carbamoyl phosphate s 44.6 17 0.00037 40.7 2.9 24 558-583 229-252 (354)
172 TIGR00337 PyrG CTP synthase. C 41.7 17 0.00036 42.8 2.3 17 566-582 370-386 (525)
173 PF01965 DJ-1_PfpI: DJ-1/PfpI 41.6 37 0.0008 32.5 4.4 45 543-588 46-91 (147)
174 TIGR01382 PfpI intracellular p 40.6 29 0.00063 33.7 3.5 38 550-588 75-112 (166)
175 PRK05380 pyrG CTP synthetase; 40.5 18 0.0004 42.5 2.4 17 566-582 370-386 (533)
176 cd03137 GATase1_AraC_1 AraC tr 38.4 33 0.00072 34.0 3.6 38 550-588 79-116 (187)
177 COG0505 CarA Carbamoylphosphat 38.4 25 0.00055 39.2 2.9 27 556-583 239-265 (368)
178 PLN02771 carbamoyl-phosphate s 38.4 25 0.00053 40.3 2.9 26 556-583 300-325 (415)
179 cd03135 GATase1_DJ-1 Type 1 gl 37.9 43 0.00094 32.1 4.3 38 550-588 76-113 (163)
180 KOG0237|consensus 37.1 36 0.00078 40.3 4.0 62 399-460 695-769 (788)
181 TIGR01383 not_thiJ DJ-1 family 36.8 42 0.00091 32.9 4.0 41 547-588 76-116 (179)
182 TIGR01815 TrpE-clade3 anthrani 34.7 28 0.0006 42.7 2.8 83 415-500 395-493 (717)
183 cd03138 GATase1_AraC_2 AraC tr 34.0 39 0.00085 33.7 3.3 38 550-588 87-124 (195)
184 PF11823 DUF3343: Protein of u 32.6 66 0.0014 27.4 4.0 33 423-455 37-69 (73)
185 COG1492 CobQ Cobyric acid synt 31.8 31 0.00067 40.1 2.4 29 555-584 313-341 (486)
186 PRK13566 anthranilate synthase 31.5 34 0.00075 41.9 2.9 83 415-500 405-503 (720)
187 COG0709 SelD Selenophosphate s 28.4 59 0.0013 35.9 3.6 67 663-733 75-141 (346)
188 PRK05368 homoserine O-succinyl 28.2 1.2E+02 0.0026 33.4 6.0 24 559-582 126-149 (302)
189 PF12687 DUF3801: Protein of u 27.9 99 0.0021 32.0 5.1 71 417-494 22-93 (204)
190 TIGR01823 PabB-fungal aminodeo 27.2 46 0.001 41.0 3.0 17 567-583 85-101 (742)
191 KOG0623|consensus 26.8 58 0.0013 36.1 3.3 37 545-582 52-88 (541)
192 COG2071 Predicted glutamine am 23.9 55 0.0012 34.8 2.4 17 566-582 105-121 (243)
193 PF08854 DUF1824: Domain of un 23.2 63 0.0014 31.0 2.4 22 554-575 22-43 (125)
194 cd03144 GATase1_ScBLP_like Typ 22.9 72 0.0016 30.0 2.7 22 557-579 67-88 (114)
195 COG0693 ThiJ Putative intracel 22.9 99 0.0021 30.7 4.0 42 546-588 78-120 (188)
196 PRK10026 arsenate reductase; P 22.8 1.4E+02 0.0029 29.2 4.7 51 1-58 1-52 (141)
197 PRK14607 bifunctional glutamin 22.7 54 0.0012 38.8 2.3 17 567-583 72-88 (534)
198 COG1395 Predicted transcriptio 21.9 1.7E+02 0.0037 32.3 5.7 69 331-411 54-127 (313)
199 PLN02889 oxo-acid-lyase/anthra 21.6 62 0.0013 40.8 2.6 18 567-584 161-178 (918)
200 COG1828 PurS Phosphoribosylfor 20.8 3.6E+02 0.0078 24.1 6.4 60 5-64 8-74 (83)
201 PRK09522 bifunctional glutamin 20.7 49 0.0011 39.2 1.4 17 567-583 76-92 (531)
No 1
>KOG1907|consensus
Probab=100.00 E-value=2.7e-158 Score=1323.87 Aligned_cols=619 Identities=41% Similarity=0.688 Sum_probs=563.0
Q ss_pred HHHhhcCCCCccEEEEEEEEEEecCCC-C-C-HHHHHHHHHhhcCcccccccCCCcccCC-CCcEEEEecCCCCCChhhh
Q psy2354 18 TKKLKAVPKVISDIESELCYNIEISRE-L-T-PVELDKLHWILNSSFECRKLSSHTNFKD-NSNVIEVGPRLNFSTPFCS 93 (749)
Q Consensus 18 l~~i~~~~~~v~sv~te~~y~V~~~~~-l-~-~~~~~~L~~LL~~~~~~~~~~~~s~~~~-~~~~veV~PR~g~~spwSs 93 (749)
++++.+......+++.++||++.+... + + ..+.-.|.|||+.|+.. .+..+|++.. ++..|||+||+||+|||||
T Consensus 22 ~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~lnl~~~l~~~~~~-sl~~~s~l~~~~~~~ievgPR~~~~tpwst 100 (1320)
T KOG1907|consen 22 LKSFEEEFVRGVSVSVEYCYHVLTQEQLLYSSALDKLNLTWLLHSPLST-SLWKESQLHPEGTKNIEVGPRTGTITPWST 100 (1320)
T ss_pred HHHHHHHhhhhhehhhhhhhHHHHHHHHHhhhhhhHHHHHHHhcccccc-ccccchhcCCCCcceEEEeccCCccccccc
Confidence 777887666667899999999875442 1 1 22222278999999887 5566666654 6777999999999999999
Q ss_pred HHHHHHHHcCCCcccEEEEEEEEEEeecCCccHHhhhhhe-eeecc--ccccCC-CC----------CC---CcccccCc
Q psy2354 94 NVLSICQSIQLHSVTRFEVSTRYKLISRGHLSRAIITKIV-LAEDK--AKYYSH-PS----------SP---LQHPVDIQ 156 (749)
Q Consensus 94 nA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~~~~~~~~-llhDr--E~~y~~-P~----------~p---l~~~V~i~ 156 (749)
|||+||++||+++|.|||||+||++++..+..+.+...++ ++||| ||+|.. |. +| +.. ||.+
T Consensus 101 na~nI~~~cG~~dV~RiErg~rylv~~~e~~~e~~~~~f~~~~~DRMTe~ly~~~p~~~~~Fd~~~p~~~v~~~~-~p~~ 179 (1320)
T KOG1907|consen 101 NATNIFEVCGYKDVERIERGIRYLVKFKEPLLENDVKEFLEILYDRMTEALYTNEPPTMVSFDDEEPKPQVEVVF-VPDK 179 (1320)
T ss_pred chhHHHHhcChHHHHHHhhceeEEEEecCccchHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCccceeee-ccch
Confidence 9999999999999999999999999998888666667788 99999 999865 22 23 444 7777
Q ss_pred C-ch-hHHhhccccCc----------------------------------------------------------------
Q psy2354 157 K-GN-VLKEIVEPVGA---------------------------------------------------------------- 170 (749)
Q Consensus 157 ~-g~-aLe~~N~eLGL---------------------------------------------------------------- 170 (749)
. ++ +|+++|+||||
T Consensus 180 ~~~k~~L~~aNqelGLAld~~dldyy~~~f~~~~kR~PTdVELFd~aQsnSEHsRHwfF~g~~~IDg~k~d~SL~kmIr~ 259 (1320)
T KOG1907|consen 180 QEGKQALEKANQELGLALDQLDLDYYYDLFVEEVKRNPTDVELFDFAQSNSEHSRHWFFRGDWTIDGRKQDKSLFKMIRN 259 (1320)
T ss_pred hhHHHHHHHHHHHhccccCcccHHHHHHHHHHHhcCCCCceeeeeeccccchhhhhheeccceEEecccCchHHHHHHHH
Confidence 7 89 99999999999
Q ss_pred ----------------------------------------------eEEee-----------------------------
Q psy2354 171 ----------------------------------------------VVFTE----------------------------- 175 (749)
Q Consensus 171 ----------------------------------------------~~~~~----------------------------- 175 (749)
++|||
T Consensus 260 T~~~n~~ntiiafsDNssa~~gf~~~~~~~P~s~v~~~~~~~~~~~ll~~aETHN~PtAVsPfpGA~TGtGGrIRD~~at 339 (1320)
T KOG1907|consen 260 THDSNNDNTIIAFSDNSSAIRGFNSVTRFAPNSTVSPWIVIFEPSDLLFKAETHNHPTAVSPFPGATTGTGGRIRDEGAT 339 (1320)
T ss_pred HHhcCCCCceEEeccchHHhhccccceeeccccccccceeecCCcceEEEeeccCCCcccCCCCCCccCCCceeeccccc
Confidence 45555
Q ss_pred -----------eeeecCCCCCCccc-c---cccCcccccc------------------cCCccccccee-----------
Q psy2354 176 -----------SFLLGDPSISTLEL-W---GAEYQENNAL------------------LCKPLHCKTLR----------- 211 (749)
Q Consensus 176 -----------~~~~~~l~~p~~~~-w---~~~~p~~~a~------------------fg~p~~~g~~r----------- 211 (749)
|||||||+||||+| | +++||.|||+ ||||+|+||+|
T Consensus 340 GrGs~~~agtaGysvg~LnipG~~qPwE~l~f~yP~~iA~pl~ImIEAsnGaSdygNkFGeP~I~Gy~rtfg~~v~~~~g 419 (1320)
T KOG1907|consen 340 GRGSYEIAGTAGYSVGDLNIPGYKQPWEDLDFGYPYHIASPLDIMIEASNGASDYGNKFGEPVISGYARTFGMRVLLENG 419 (1320)
T ss_pred cccceeeecccccccccccCCCCCCCCcccccCCccccCCHHHHHhhCcCChhhhcccccchhhhhhhhhhcccccccCc
Confidence 99999999999999 9 7999999999 99999999999
Q ss_pred ---------eEE----------------------EEeeCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHH
Q psy2354 212 ---------MIS----------------------AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLN 258 (749)
Q Consensus 212 ---------m~~----------------------v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q 258 (749)
||| |+||||+||||+||| ||+++|+.++||||+||||||||||||||
T Consensus 420 errey~KPIMfsgGiG~i~~~~~~K~~~apg~~likiGGp~yrIG~GGGAASSv~~G~g~aeLDFaaVQRGdaEM~~kl~ 499 (1320)
T KOG1907|consen 420 ERREYHKPIMFSGGIGTIRKQHARKEPIAPGQLLIKIGGPVYRIGVGGGAASSVVQGEGSAELDFAAVQRGDAEMERKLQ 499 (1320)
T ss_pred cccccccceEeecccCccCHHHhhcCCCCCCCEEEEecCceEEEecccchhhhhhcCCCccccchHHhhcCCHHHHHHHH
Confidence 888 999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCEEEEcccCcccccccccccccC--CCceEEecccccCCCCcChhhhcccccccccccccCcccHH
Q psy2354 259 RVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCK 336 (749)
Q Consensus 259 ~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~ 336 (749)
||||||.++| +.|||.+||||||||+||+++|||++ .|++|++++|+++||+||||||||+||||||+++|++++++
T Consensus 500 rVvrAC~~lg-e~NpI~sIHDqGAGGn~NvlkELV~~~~~Ga~~~~r~~~~gdpsmS~~EiW~aEyQE~~allv~a~~l~ 578 (1320)
T KOG1907|consen 500 RVVRACAELG-ENNPIQSIHDQGAGGNGNVLKELVEDNDLGATFDSRTFQLGDPSMSPMEIWCAEYQENYALLVKAEDLD 578 (1320)
T ss_pred HHHHHHHHhc-CCCceeEeeccCCCccccccHhhccccCCccEEEeeeeecCCCCCCHHHHhhhhhhhcceeeeCHHHHH
Confidence 9999999999 99999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccccCCCCCCCCcccccchhhhhcCCCcc--------------------
Q psy2354 337 TLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQK-------------------- 396 (749)
Q Consensus 337 ~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~~~~~~~~~~~~vdlp~~~l~~~~p~~-------------------- 396 (749)
.|++||+|||||++|||++|+++|+++.++. -.++++||+|+.++||||||
T Consensus 579 ~le~IckRERcp~svVG~vt~eqR~~l~d~~---------~~~~aidl~~~~llG~~pK~s~~l~~~~~~lk~l~lp~~~ 649 (1320)
T KOG1907|consen 579 ILESICKRERCPVSVVGEVTGEQRVILLDKL---------AKETAIDLEMRQLLGKPPKMSRKLKRAPRVLKKLELPSGL 649 (1320)
T ss_pred HHHHHHHhccCCeeEEEEEccCceEEEecCC---------CCCCccCCchHhhcCCCccccccccccccccccccCCCCC
Confidence 9999999999999999999999999999865 45889999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 650 ~l~dAl~RVL~LpsV~SKrfLttkvDRsVtGLiaqqQ~VGPlqvplADvavt~~S~~~~tG~A~amGeqPik~Lida~a~ 729 (1320)
T KOG1907|consen 650 TLRDALERVLRLPSVASKRFLTTKVDRSVTGLIAQQQCVGPLQVPLADVAVTATSHFDTTGEAVAMGEQPIKALIDAAAS 729 (1320)
T ss_pred hHHHHHHHHhccccccccceeeeeccchhhheeehhhccCcccccceeeeEEEEEEeccccccccccccchHhhhCHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 730 ARm~VaE~l~NLv~a~i~sL~dvK~SgNWM~aak~~GEGarlydAv~aL~~~L~eLgiAIdgGKDSlSMa~k~~ge~Vka 809 (1320)
T KOG1907|consen 730 ARMCVAEALMNLVAAKITSLKDVKLSGNWMWAAKHPGEGARLYDAVQALCLGLCELGIAIDGGKDSLSMAMKWDGEVVKA 809 (1320)
T ss_pred hHHHHHHHHHHhHhhcccchhheeeccceeecccCCCcchHHHHHHHHHHHHHHHhceeecCCccchhhheeeCCeEEec
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 810 PgtLvIsayapc~dv~k~vtP~Lk~~~~gs~~~Ll~i~l~~~k~rLGgSaLaQvy~QiG~d~Pdl~~~~~lk~~f~~vqq 889 (1320)
T KOG1907|consen 810 PGTLVISAYAPCPDVTKTVTPDLKANVDGSKTSLLWIDLANSKMRLGGSALAQVYSQIGDDCPDLDNFDELKKFFSVVQQ 889 (1320)
T ss_pred CceEEEEeeccCCCcceeecccccCCCCCCceEEEEEEccccccccchHHHHHHHHHhCCCCCCccchHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------ccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHHHHHHcCCCe
Q psy2354 397 ------------------------MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSC 452 (749)
Q Consensus 397 ------------------------MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~gv~~ 452 (749)
|||||++|++|+|+....+..+.++||+||+|+|+||...|+++|+++|+++||.+
T Consensus 890 L~~~~ii~AgHD~SDGGLlvt~lEMAfag~~gi~idl~~~~~~~~~~~~LF~EElG~v~evs~~dl~~v~~~~~~~gv~~ 969 (1320)
T KOG1907|consen 890 LLNEGIILAGHDISDGGLLVTLLEMAFAGNVGIEIDLDSPNQNIKLFDILFAEELGAVLEVSDTDLEKVLEIFSEAGVKC 969 (1320)
T ss_pred HHhcCceeecccccCCchhHHHHHHHhhcccceEEecCCccccccHHHHHHHHhhCeEEEeccccHHHHHHHHHhcCCcc
Confidence 99999999999998643456789999999999999999999999999999999999
Q ss_pred eEeeEeec-CCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcc--cCC-----
Q psy2354 453 KKIGVCDA-FGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ--YQP----- 524 (749)
Q Consensus 453 ~~IG~vt~-~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~--f~p----- 524 (749)
..||++.. ++.+.++.++.+|.++++.++.+|++.|+.|||+||++|+||+|+++|++.++++.+|.|+ |.|
T Consensus 970 ~~ig~~~~~~g~~~~i~~~~~g~~~~~~~~s~L~~~We~tsy~l~klq~npecae~e~~~i~~~~~p~~~l~~~P~~~~~ 1049 (1320)
T KOG1907|consen 970 EYIGKASAVFGQDAHIKISVNGHLILNEKLSDLREEWELTSYELQKLQDNPECAEVERECIKDNYDPQYDLYYNPAFIHN 1049 (1320)
T ss_pred eeeeeeccccCCCceEEEecCCeEEecchHHHHHHHHHHhHHHHHHHhhCHHHHHHHHhhcccccCCCCceeeCchhhhH
Confidence 99998733 1355899999999999999999999999999999999999999999999999998899887 665
Q ss_pred ---------Ccc-------------------------------ccc--cccCC------------CcccccchHHHHHhh
Q psy2354 525 ---------VRD-------------------------------DIV--GATLG------------KKDALGSAKGWAASL 550 (749)
Q Consensus 525 ---------PkV-------------------------------Dl~--~~sLd------------ygDvlgsgkgwa~si 550 (749)
||| ||+ +.+|| |+||||||||||++|
T Consensus 1050 ~~~~l~s~~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasi 1129 (1320)
T KOG1907|consen 1050 EQLFLSSTAPKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASI 1129 (1320)
T ss_pred HHHhhhcCCCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhhe
Confidence 887 776 55664 999999999999999
Q ss_pred ccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccC
Q psy2354 551 LLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRN 630 (749)
Q Consensus 551 L~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~g 630 (749)
|+|+.++.||++||+|+|||+||||||||+|+++|||+. +. +.||.+.|.||.|+||||||.+|+|..++||||.|
T Consensus 1130 l~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p--~~--~~~p~~~l~~Nes~rfE~r~~~vkI~~~~SIml~g 1205 (1320)
T KOG1907|consen 1130 LFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIGP--EV--GKWPDVFLDHNESGRFECRFGMVKIESNVSIMLSG 1205 (1320)
T ss_pred eeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccCc--cc--cCCCceeeecccccceeeeEEEEEeCCCchhhhcc
Confidence 999999999999999999999999999999999999995 33 46998889999999999999999999999999999
Q ss_pred CCCceeeEEeecccceeeEeee
Q psy2354 631 LENSVLGVWVAHGEVMLRGAAT 652 (749)
Q Consensus 631 m~Gsvlpi~vaHGeGr~~~~a~ 652 (749)
|+||+||||++|||||++|...
T Consensus 1206 M~gs~LgvwvAHGEGRa~f~~e 1227 (1320)
T KOG1907|consen 1206 MAGSVLGVWVAHGEGRATFRSE 1227 (1320)
T ss_pred ccCCceeeEEEecccceecCcH
Confidence 9999999999999999998754
No 2
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=100.00 E-value=7.5e-138 Score=1255.82 Aligned_cols=623 Identities=42% Similarity=0.696 Sum_probs=555.0
Q ss_pred HHHhhc-CCCCccEEEEEEEEEEecCCCCCHHHHHHHHHhhcCcccccccCCCccc---CC---CCcEEEEecCCCCCCh
Q psy2354 18 TKKLKA-VPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNF---KD---NSNVIEVGPRLNFSTP 90 (749)
Q Consensus 18 l~~i~~-~~~~v~sv~te~~y~V~~~~~l~~~~~~~L~~LL~~~~~~~~~~~~s~~---~~---~~~~veV~PR~g~~sp 90 (749)
++++++ ..+.|.+|+++|||+|++.++|++++.++|.|||++|+++.....++++ .. +..+++|+||+||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~pr~~~~sp 83 (1307)
T PLN03206 4 LRKVQTKVSNDIVSIETEQCFNVGLESPLSAEKLETLKWLLRETFEPENLGTESFLEAKKSEGLNAVVVEVGPRLSFTTA 83 (1307)
T ss_pred HHHHhhhcCCCceEEEEEEEEEEEcCCCCCHHHHHHHHHHhccccCcccccccccccccccCCCceeEEEEeCCCCCCCc
Confidence 677874 5568999999999999988899999999999999977676543333322 11 2368999999999999
Q ss_pred hhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCccHHhhhhhe-eeecc--ccccCCCC---------CCCcccccCcC-
Q psy2354 91 FCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSRAIITKIV-LAEDK--AKYYSHPS---------SPLQHPVDIQK- 157 (749)
Q Consensus 91 wSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~~~~~~~~-llhDr--E~~y~~P~---------~pl~~~V~i~~- 157 (749)
||||||+|||+|||+.|+||||++||+|....+.+.++++.+. ++||| |++|+.|. +|+.+ ||+++
T Consensus 84 wss~a~~i~~~~gl~~i~rier~~~~~~~~~~~~~~~~~~~~~~~~~drmte~~~~~~~~~~~~~~~p~~~~~-v~~~~~ 162 (1307)
T PLN03206 84 WSTNAVSICSACGLTEVTRLERSRRYLLFSSSPLDESQINAFAAMVHDRMTECVYPQPLTSFESGVVPEPVYT-VPVMEE 162 (1307)
T ss_pred chhHHHHHHHHcCCcceEEEEeeEEEEEecCCCCCHHHHHHHHHhcCCCCcceecCCchHhhcCCCCCCCceE-ECCCCC
Confidence 9999999999999999999999999999854445445566677 99999 99997743 56999 99999
Q ss_pred ch-hHHhhccccCc------------------------------------------------------------------
Q psy2354 158 GN-VLKEIVEPVGA------------------------------------------------------------------ 170 (749)
Q Consensus 158 g~-aLe~~N~eLGL------------------------------------------------------------------ 170 (749)
|+ +|+++|+++||
T Consensus 163 ~~~~L~~~~~~~gLAl~~~ei~~~~~~F~~~~~R~PTd~El~~~aq~~SEHCRHk~F~~~~~id~~~~~~sL~~mi~~t~ 242 (1307)
T PLN03206 163 GRAALEEINKEMGLAFDEQDLDYYTRLFRDDIKRDPTNVELFDIAQSNSEHSRHWFFSGKLVIDGQPMPKTLFQMVKDTL 242 (1307)
T ss_pred CHHHHHHHHHhcCCcCCHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhhhhccCcceeeeEEEEcCCcCCccHHHHHHHHH
Confidence 99 99999999999
Q ss_pred ---------------------------------------------eEEee------------------------------
Q psy2354 171 ---------------------------------------------VVFTE------------------------------ 175 (749)
Q Consensus 171 ---------------------------------------------~~~~~------------------------------ 175 (749)
++||+
T Consensus 243 ~~~~~~~~~~~~Dns~~i~g~~~~~~~~~~~~~~~~~~~~~e~~~i~fK~ETHNHPTaIePf~GAATGvGG~IRD~~a~G 322 (1307)
T PLN03206 243 KANPNNSVIGFKDNSSAIRGFVVQPLRPVSPGSPSPLAPVDRDLDILLTAETHNFPCAVAPYPGAETGAGGRIRDTHATG 322 (1307)
T ss_pred HHCCCCceEEeeehhhhhccceeeEEeccCCCCCcceeEecCceEEEEEeccCCCCCccCCCCcccccCCceeecccccC
Confidence 45555
Q ss_pred ----------eeeecCCCCCCccc-c---cccCcccccc------------------cCCccccccee------------
Q psy2354 176 ----------SFLLGDPSISTLEL-W---GAEYQENNAL------------------LCKPLHCKTLR------------ 211 (749)
Q Consensus 176 ----------~~~~~~l~~p~~~~-w---~~~~p~~~a~------------------fg~p~~~g~~r------------ 211 (749)
|||||+|++||+.+ | ++++|.++++ ||+|+|+||||
T Consensus 323 rGa~PiA~l~~~~~g~l~~~g~~~p~e~~~~~~p~~l~~~~~I~~~~~~G~s~YGN~~G~P~v~G~~~~F~~~~~~g~~~ 402 (1307)
T PLN03206 323 RGSFVVAGTAGYCVGNLRIEGSYAPWEDSSFVYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPNGERR 402 (1307)
T ss_pred CCceeeecceeEEecCCCCCCCcCccccccccCcccCCCHhHHhhccCCccccCCcccCCcccCcEEEEecccccccccc
Confidence 99999999999999 9 6889999985 99999999986
Q ss_pred ------eEE----------------------EEeeCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHHHHH
Q psy2354 212 ------MIS----------------------AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVI 261 (749)
Q Consensus 212 ------m~~----------------------v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi 261 (749)
|++ |++|||||||||||| ||+.++++++++||++||||||||||||||||
T Consensus 403 ~~~kPim~ag~vG~~~~~~v~k~~~~~G~~vv~lGG~tgRdGigGat~SS~~~~~~s~~~d~~aVQ~GnP~~Ekklq~vi 482 (1307)
T PLN03206 403 EWLKPIMFSGGIGQIDHTHLTKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMSQKLYRVV 482 (1307)
T ss_pred ccCCCceEEEEEEEEcHHHcccCCCCCCCEEEEECCCcccccccchhhhhhhhCCccccccCCccccCCHHHHHHHHHHH
Confidence 666 999999999999999 99999988899999999999999999999999
Q ss_pred HHHHhCCCCCCCEEEEcccCcccccccccccccCCCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHH
Q psy2354 262 RACIELPNNLNPIESIHDQGAGGNGNVLKEIVEPVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMI 341 (749)
Q Consensus 262 ~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i 341 (749)
|+|+|++ +.|||++|||+||||+|||++||+++.|++|+||+||++||+|+|+|||||||||||+|+|+|++++.|++|
T Consensus 483 ~ac~e~~-~~~~I~~i~D~GAGGls~a~~Ela~~~G~~i~Ld~Vp~~e~gmsp~EI~~SESQERm~l~V~p~~~~~f~~i 561 (1307)
T PLN03206 483 RACVEMG-EDNPIVSIHDQGAGGNCNVVKEIIYPKGAEIDIRAVVVGDHTLSVLEIWGAEYQEQDALLIKPESRDLLQSI 561 (1307)
T ss_pred HHHHHhh-cCCCEEEEEecCCchHHHhHHHHhhcCceEEEhhhCcCCCCCCCHHHHHHhHHhhhheeeECcccHHHHHHH
Confidence 9999999 999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCeEEEEEEeCCCCEEEEecc---ccccCCCCCCCCcccccchhhhhcCCCcc----------------------
Q psy2354 342 SAREKCPVQFVGVVTGSNKIVLAEDK---AKYYSNPSSPLQHPVDIQMELICGKMPQK---------------------- 396 (749)
Q Consensus 342 ~~re~~~~~vVG~~T~~~~l~~~~~~---f~~~~~~~~~~~~~vdlp~~~l~~~~p~~---------------------- 396 (749)
|+|||||++|||++|+++++++.|.. |++++-- ..++.|+|||+++|++++|+|
T Consensus 562 ~~re~~~~~vVG~vT~~~rl~v~~~~~~~~~~~~g~-~~~~~~~dlp~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1307)
T PLN03206 562 CDRERCSMAVIGTIDGSGRVVLVDSAAPEKCEANGL-PPPPPAVDLDLEKVLGDMPQKTFEFKRVANKLEPLDIPPGITV 640 (1307)
T ss_pred HHHcCCCeEEEEEEecCCeEEEEECCcccccccccc-ccCceeEEEEhHHhcCCCCccccccccccccccccccCCCcCH
Confidence 99999999999999999999999864 3444311 134789999999999999875
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 641 ~~~l~~vL~~pnVaSK~~l~~~~D~~V~g~vv~~~~vGp~q~p~aD~aV~~~~~~~~~g~a~s~G~~p~~~~~dp~~ga~ 720 (1307)
T PLN03206 641 MDALKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQIPLADVAVIAQTHTGLTGGACAIGEQPIKGLVDPKAMAR 720 (1307)
T ss_pred HHHHHHHhcCCccccccchhhhcccccCceEcccCccCCccCCCcceeEEEEeCCCCeEEEEEecCCCceeeeCHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 721 ~AV~Ea~~Nlvaa~~~~l~di~~s~nw~~~~~~p~~~~~l~~av~g~~~~~~~Lgipii~GKdSls~~~~~~~~~~~~P~ 800 (1307)
T PLN03206 721 LAVGEALTNLVWAKVTALSDVKASGNWMYAAKLDGEGADMYDAAVALRDAMIELGVAIDGGKDSLSMAAQAGGEVVKAPG 800 (1307)
T ss_pred HHHHHHHhHhhccCCCcHHHeEEEcChhHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcccCeecCCCCCCCCCCCcCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 801 TLvIs~~~~v~Dv~~~vtp~lK~~G~~vlL~idlG~~~~~LGGS~~~q~~~~~g~~~Pdv~d~~~lK~~f~av~~Li~~g 880 (1307)
T PLN03206 801 NLVISAYVTCPDITKTVTPDLKLGDDGVLLHVDLGKGKRRLGGSALAQAYDQIGDDCPDLDDVAYLKKAFEATQDLIAKR 880 (1307)
T ss_pred CEEEEEEEEcCCcccCcChhhcCCCCEEEEEEecCCCCcCccccHHHHHhCccCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence
Q ss_pred -------------------ccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHHHHHHcCCCeeEeeE
Q psy2354 397 -------------------MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKIGV 457 (749)
Q Consensus 397 -------------------MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~gv~~~~IG~ 457 (749)
|||+|++|++|+++.. .+++.+.|||||+|+|+||+++++++|+++|+++|+++++||+
T Consensus 881 lV~A~HDvSdGGL~~ALaEMAfag~~G~~Idl~~~--~~~~~~~LFsEs~G~VieV~~e~~~~v~~~l~~~gi~~~vIG~ 958 (1307)
T PLN03206 881 LISAGHDISDGGLVVTLLEMAFAGNCGINVDLPSS--GHSAFETLFAEELGLVLEVSRKNLDAVMEKLAAAGVTAEVIGQ 958 (1307)
T ss_pred CeeEEEeCCcCHHHHHHHHHHhhcCCcEEEEeCCc--cchHHHHHhCCCccEEEEEehhHHHHHHHHHHHCCCCeEEEEE
Confidence 9999999999999853 2457899999999999999999999999999999999999999
Q ss_pred eecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcc--cC------------
Q psy2354 458 CDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ--YQ------------ 523 (749)
Q Consensus 458 vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~--f~------------ 523 (749)
+++ + +.++|+++|+.+++.++++|++.|++|||+||++|+||.|+++|++.+.+...|.++ |+
T Consensus 959 vt~-~--~~i~I~~~g~~~l~~~l~eL~~~W~~tS~~le~l~~~~~~~~~e~~~~~~~~~~~~~l~f~~~~~~~~~~~~~ 1035 (1307)
T PLN03206 959 VTA-S--PLIEVKVDGATCLSEKTASLRDMWEETSFQLEKLQRLESCVAQEKEGLKSRKAPTWKLSFTPAFTDKKIMNAT 1035 (1307)
T ss_pred ECC-C--CeEEEEECCEEEEecCHHHHHHHHhccChhhhhccCCchhhhHHHhhhhccCCceeecccCccccccccccCC
Confidence 987 6 789999999999999999999999999999999999999999999877665555433 32
Q ss_pred -CCcc-------------------------------ccc--cccCC------------CcccccchHHHHHhhccChhHH
Q psy2354 524 -PVRD-------------------------------DIV--GATLG------------KKDALGSAKGWAASLLLNEGIK 557 (749)
Q Consensus 524 -pPkV-------------------------------Dl~--~~sLd------------ygDvlgsgkgwa~siL~n~~~~ 557 (749)
+||| ||+ +.+|+ |||+|+||++||+++++|+.++
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~ 1115 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLL 1115 (1307)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHH
Confidence 2555 444 33342 9999999999999999999999
Q ss_pred HHHHHHHhCCCCeeEeeechhhhhhccCccccCcC------CcCcccccccccccCCCcceeeeEEEEecCCCcccccCC
Q psy2354 558 TQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQ------DKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNL 631 (749)
Q Consensus 558 ~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g------~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm 631 (749)
++|.+|++|+|||+||||||||+|+++||+|..+. ..+++|| +|++|.|+||||||++|+|.+++|+||++|
T Consensus 1116 ~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~~p--~l~~N~s~rfesr~v~v~V~~s~si~l~~~ 1193 (1307)
T PLN03206 1116 QQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQP--RFVHNESGRFECRFTSVTIEDSPAIMLKGM 1193 (1307)
T ss_pred HHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccCCc--eeeecCCCCeEEeceEEEECCCCChhhccc
Confidence 99999999999999999999999999999996431 1126799 999999999999999999999999999999
Q ss_pred CCceeeEEeecccceeeEe
Q psy2354 632 ENSVLGVWVAHGEVMLRGA 650 (749)
Q Consensus 632 ~Gsvlpi~vaHGeGr~~~~ 650 (749)
+|++|||||+|||||+.+.
T Consensus 1194 ~G~~l~i~vaHgEGr~~~~ 1212 (1307)
T PLN03206 1194 EGSTLGVWAAHGEGRAYFP 1212 (1307)
T ss_pred CCCEEEEEEEcCCCCeecC
Confidence 9999999999999998865
No 3
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=100.00 E-value=4.2e-123 Score=1134.86 Aligned_cols=628 Identities=35% Similarity=0.574 Sum_probs=550.8
Q ss_pred EcCCCCCChHHH---HHHhhcCCCCccEEEEEEEEEEecCCCCCHHHHHHHHHhhcC-cccccccCCCcccCCCCcEEEE
Q psy2354 6 YYSKPGIGAGEK---TKKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNS-SFECRKLSSHTNFKDNSNVIEV 81 (749)
Q Consensus 6 ~~~~~als~~~~---l~~i~~~~~~v~sv~te~~y~V~~~~~l~~~~~~~L~~LL~~-~~~~~~~~~~s~~~~~~~~veV 81 (749)
|.|.||||+|+. +++|++....|.+|++++||+|++.++|++++.++|..||.+ |..+.. .+.+ ...+|||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~v 76 (1310)
T TIGR01735 2 LRGPSALSGFRLEKLLQKLQTKVPELTGVYAEFCYFVGWESALTADEEEKLQLLLLAGSVLEPP---QSPL--GRGLLEV 76 (1310)
T ss_pred cCCcccCCHHHHHHHHHHHHhcCCCceEEEEEEEEEEEcCCCCCHHHHHHHHhhcccCCccccc---cCcC--CceEEEE
Confidence 579999999999 788998777899999999999998889999999999854443 321110 1111 1238999
Q ss_pred ecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCccHHhhhhhe-eeecc--ccccCCCC---------CC-
Q psy2354 82 GPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSRAIITKIV-LAEDK--AKYYSHPS---------SP- 148 (749)
Q Consensus 82 ~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~~~~~~~~-llhDr--E~~y~~P~---------~p- 148 (749)
+|||||+||||||||+|||+|||..|.||||+++|+|....+.+.++++++. .+||| |++|..|. +|
T Consensus 77 ~pr~g~~~p~ss~a~~i~~~~g~~~v~rie~~~~y~~~~~~~~~~~~~~~~~~~l~d~m~e~~~~~~~~~~~~~~~~~~~ 156 (1310)
T TIGR01735 77 GPRLGTISPWSSKATSIARNCGLAKVDRIERGRRYYLSGAHPLSEEQEAQAAALLHDRMTESVLPHEIEAFELFSVPEPL 156 (1310)
T ss_pred EcCCCcCChHHHHHHHHHHHcCCccccEEEEEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEecCCchhhhhhccCCCCC
Confidence 9999999999999999999999988999999999999753345556677888 99999 99986532 33
Q ss_pred -CcccccCcC-ch-hHHhhccccCc-------------------------------------------------------
Q psy2354 149 -LQHPVDIQK-GN-VLKEIVEPVGA------------------------------------------------------- 170 (749)
Q Consensus 149 -l~~~V~i~~-g~-aLe~~N~eLGL------------------------------------------------------- 170 (749)
+.+ |||++ |+ +|+++|+|+||
T Consensus 157 ~~~~-v~~l~~~~~~L~~~~~~~gLaLs~~e~~~i~~~F~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~id~~~~~~ 235 (1310)
T TIGR01735 157 NLTT-IDVLGGGRLALEKANQELGLALDEDEIDYLTKRFQELQRNPSDVELMMFAQANSEHCRHKIFNADWIIDGKKQDK 235 (1310)
T ss_pred Ccce-eccccCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcCCccCCCceeecCcccch
Confidence 778 99999 99 99999999888
Q ss_pred -------------------------------------------------------eEEee--------------------
Q psy2354 171 -------------------------------------------------------VVFTE-------------------- 175 (749)
Q Consensus 171 -------------------------------------------------------~~~~~-------------------- 175 (749)
++||+
T Consensus 236 slf~~i~~t~~~~~~~~~~~~~dNa~vi~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~k~Ethnhpt~i~Py~GAatgvg 315 (1310)
T TIGR01735 236 SLFQMIKSTHEANPENTVSAYKDNSSVIEGHKVGRLRPDPPTRPEYRQHQEDLVHILMKVETHNHPTAIAPFPGASTGAG 315 (1310)
T ss_pred hHHHHHHhhhhcCCCceEEEecCcEEEEEcccccccccccccccccccccccceEEEEEeccCCCCCccCchhhHHHHHh
Confidence 33333
Q ss_pred --------------------eeeecCCCCCCccc-c--cccCcccccc------------------cCCccccccee---
Q psy2354 176 --------------------SFLLGDPSISTLEL-W--GAEYQENNAL------------------LCKPLHCKTLR--- 211 (749)
Q Consensus 176 --------------------~~~~~~l~~p~~~~-w--~~~~p~~~a~------------------fg~p~~~g~~r--- 211 (749)
+||||||+||++++ | .+++|.++++ ||+|+|+||+|
T Consensus 316 g~iRD~~a~GrGa~PiA~~d~l~fg~p~~~~~~~~~e~~~~~P~~~~~p~~Il~e~~~G~~~~gn~~G~P~v~G~vs~f~ 395 (1310)
T TIGR01735 316 GEIRDEGATGRGAKPKAGLTGFCVSNLNIPGLEQPWEDPFQKPERIASPLDIMIEAPLGAAAFNNEFGRPNLLGYFRTFE 395 (1310)
T ss_pred HhHhChhhhCCCCeeeeeeeeeecCCCCCCCCCCccccccCCchhhccHHHHHHHHHHHHHHHhhhhCCcccceeeeecc
Confidence 99999999999998 9 5788998877 99999999995
Q ss_pred -----------------eEE----------------------EEeeCCccccccccc--cccccCCCCccCCCCccccCC
Q psy2354 212 -----------------MIS----------------------AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGD 250 (749)
Q Consensus 212 -----------------m~~----------------------v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gn 250 (749)
|++ |++||+||||||||| ||+.+++.++++||++||+||
T Consensus 396 ~~~~~~~g~~~~~~~P~~~~g~vG~i~~~~~~~~~~~~G~~ivllGg~~~rdglgGs~~ss~~~g~~~~~~~~~~Vq~gd 475 (1310)
T TIGR01735 396 LKASLPGGQVRGYHKPIMLAGGIGSIDAEHIQKGEIEPGALLIVLGGPAMLIGLGGGAASSMVSGTNTADLDFASVQRGN 475 (1310)
T ss_pred ccccccccccccccCCccEEEEEEEechhhcccCCCCCCCEEEEECCCCCCCCccHHHHHHHHhCCCcccccCCCCCCCC
Confidence 333 899999999999999 899999998999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC--CCceEEecccccCCCCcChhhhccccccccccc
Q psy2354 251 PEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNAL 328 (749)
Q Consensus 251 p~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l 328 (749)
|+||||+|++|++|++++ +.|+|.+|||+||||++||++||+.+ .|++|+|++||++|++|+|+|||+|||||||+|
T Consensus 476 p~~ek~~~~~i~~~~~~~-~~~~i~sihD~gaGGls~al~Ema~~~g~G~~i~L~~vp~~~~~m~~~eil~sESQeR~vl 554 (1310)
T TIGR01735 476 PEMERRCQEVIDRCWQLG-EKNPIISIHDVGAGGLSNALPELIHDGGRGAVIDLRAVPLDDPGLSPLEIWCNESQERYVL 554 (1310)
T ss_pred HHHHHHHHHHHHHHHHcC-CCCceEEEeccCccHHHHHHHHHHhcCCceEEEEcCCCcccCCCCCHHHHhhccccccEEE
Confidence 999999999999999999 99999999999999999999999996 699999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccc----cCCCCCCCCcccccchhhhhcCCCcc--------
Q psy2354 329 LCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKY----YSNPSSPLQHPVDIQMELICGKMPQK-------- 396 (749)
Q Consensus 329 ~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~----~~~~~~~~~~~vdlp~~~l~~~~p~~-------- 396 (749)
+|+|++++.|++||+||+||+++||++|++++|++.|+.-.. ...+..+++.++|||+++|++++|+|
T Consensus 555 ~v~~~~~~~f~~i~~~~~~~~~vIG~vt~~~~l~v~~~~~~~~~~~~~~~~~~~~~~vdl~~~~L~~~~P~~~~~~~~~~ 634 (1310)
T TIGR01735 555 LVRAENLEIFTAICERERCPFAVVGTATGDGRLTLVDDTPVRRNGQGDAPSHFPNNPVDLPLEVLLGKMPKMTRFVQRKA 634 (1310)
T ss_pred EECcccHHHHHHHHHHcCCCEEEEEEECCCceEEEEecCcccccccccccccCCCeEEEeEHHHHcCCCCcccccccccc
Confidence 999999999999999999999999999999999999841000 00112258899999999999999986
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 635 ~~~~~~~~~~~~~~~~~l~~vL~~pnVaSK~~l~~~~D~~V~g~tv~~~~vGp~q~p~aDaaV~~~~~~~~~G~ama~G~ 714 (1310)
T TIGR01735 635 PMLQPLDIPPGLDLHEALERVLRLPAVASKRFLITIGDRSVGGLVARDQMVGPWQTPLADVAVTAASFDTYTGEAMAIGE 714 (1310)
T ss_pred ccccccccCCCcCHHHHHHHHhcCCccccccchhhhcccccCCcEeeccCcCCCCCCCcCeEEEEecCCCceEEEEEEcC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 715 ~P~~~~idP~~gA~~AV~EAl~NlaaaG~~~l~~i~~s~Nwm~~~~~pge~~~l~~av~al~eac~~LGipiigGKdSls 794 (1310)
T TIGR01735 715 RPPKALLDPKASARLAVGEAITNLAAALVGDLSDVKLSANWMAAAGHPGEDAALYDAVKAVSELCPALGIAIPVGKDSLS 794 (1310)
T ss_pred CCCeeccCHHHHHHHHHHHHHhheeecCCcCHHHccccccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 795 ~~~~~~~~G~~~~v~~PpTlvisA~g~v~Dv~k~vTp~lk~~ggd~~Li~i~lg~~~~~LGGS~laq~~~~~g~~~P~vd 874 (1310)
T TIGR01735 795 MKTRWQDNGETKSVTAPGSLVISAFAPVPDVRKTVTPDLKHDKGDSHLLLVDLGPGKNRLGGSALAQVFGQLGGDCPDLD 874 (1310)
T ss_pred cccccccCCCcCccccCCCcEEEEEEEecCHhhccChhhccCCCCceEEEEEccCCcccchHHHHHHHhccccCCCCCCC
Confidence
Q ss_pred --------------------------------------ccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCH
Q psy2354 397 --------------------------------------MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENE 438 (749)
Q Consensus 397 --------------------------------------MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~ 438 (749)
|||||++|++|+++.. ..++...||||++|+|+||++++.
T Consensus 875 ~~~~lk~~f~~i~~li~~glV~A~HDvSdGGL~~aLaEMAfag~~G~~Idl~~i--~~~~~~~LFsEs~G~VieV~~e~~ 952 (1310)
T TIGR01735 875 DPERLKAFFAVMQGLVAEGLLLAYHDRSDGGLVTTLLEMAFAGHCGLDVDLDAL--GDSLFAVLFNEELGAVIQVAKPDL 952 (1310)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEeeCCcChHHHHHHHHHHhCCCcEEEEeCCC--CCcHHHHHhCCCCcEEEEEehHHH
Confidence 9999999999999853 246788899999999999999999
Q ss_pred HHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCC
Q psy2354 439 AFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGP 518 (749)
Q Consensus 439 ~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p 518 (749)
++|+++|+++|+++.+||.++. ..++++.|+++++.+++.++++|++.|++|||+||++|+||.|+++|++.+.+...|
T Consensus 953 ~~v~~~l~~~Gi~~~viGig~~-~~~~~i~I~~~g~~l~~~~~~eL~~~W~~ts~~~~~l~~~~~~~~~e~~~~~~~~~~ 1031 (1310)
T TIGR01735 953 AAVLELLRAAGLTALILGIGTP-TGHPMIRISVNGATLLSEKRSELRDIWEETSFQLQRLRDNPECAEEEFEGLRDRDGP 1031 (1310)
T ss_pred HHHHHHHHhCCCceEEEEEEEE-CCCCEEEEEeCCEEEeeCcHHHHHHHHHhhhHhhcccccCchhhhHHHhhhhcccCC
Confidence 9999999999999998885543 223789999999999999999999999999999999999999999999988777677
Q ss_pred Ccc----cCC--------------Ccc-------------------------------ccc--cccCC------------
Q psy2354 519 KYQ----YQP--------------VRD-------------------------------DIV--GATLG------------ 535 (749)
Q Consensus 519 ~~~----f~p--------------PkV-------------------------------Dl~--~~sLd------------ 535 (749)
+|+ |++ ||| ||+ +.+|+
T Consensus 1032 ~~~~~~~~~~~~~~~~p~~~~~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFS 1111 (1310)
T TIGR01735 1032 GLKLPLTFDVNEDIAAPFINKGVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFS 1111 (1310)
T ss_pred CcccccccCcccccccccccCCCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCC
Confidence 664 221 454 444 34452
Q ss_pred CcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhh-ccCccccCcCCcCcccccccccccCCCcceee
Q psy2354 536 KKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMN-LLGWFSVSTQDKNNLVTDVMLSHNNSERFECR 614 (749)
Q Consensus 536 ygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~-~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr 614 (749)
|||+||||+|||+++++|+.++++|.+|++|+|||+||||||||+|+ ++|||| +. ++|| +|++|.|+|||||
T Consensus 1112 ygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp---~~--~~~p--~l~~N~s~~fe~r 1184 (1310)
T TIGR01735 1112 YGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIP---GT--ENWP--HFVRNNSERFEAR 1184 (1310)
T ss_pred CccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCC---CC--CCCc--eeeecCCCCeEEe
Confidence 99999999999999999999999999999999999999999999999 889999 44 6799 9999999999999
Q ss_pred eEEEEecCCCcccccCCCCceeeEEeecccceeeEe
Q psy2354 615 YSTVKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGA 650 (749)
Q Consensus 615 ~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~ 650 (749)
|++|+|++++|+||++|+|+++||||+|||||+.+.
T Consensus 1185 ~~~~~v~~s~s~~~~~~~g~~l~~~vaHgEGr~~~~ 1220 (1310)
T TIGR01735 1185 VASVRVGESPSIMLRGMAGSRLPVAVAHGEGYAAFS 1220 (1310)
T ss_pred eeEEEECCCCChhhhhcCCCEEEEEeEcCCCCeeeC
Confidence 999999999999999999999999999999998653
No 4
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=100.00 E-value=2.7e-115 Score=1069.92 Aligned_cols=616 Identities=30% Similarity=0.502 Sum_probs=553.7
Q ss_pred EEEEcCCCCCChHHH---HHHhhcCCCCccEEEEEEEEEEecCCCCCHHHHHHHHHhhcCcccccccCCCcccCCCCcEE
Q psy2354 3 IIRYYSKPGIGAGEK---TKKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKDNSNVI 79 (749)
Q Consensus 3 ~~~~~~~~als~~~~---l~~i~~~~~~v~sv~te~~y~V~~~~~l~~~~~~~L~~LL~~~~~~~~~~~~s~~~~~~~~v 79 (749)
|++|||.+|+|+++. +++|++....|.+|++++||+|+.+++|++++.++|.|||+||+.+. .+ ....+
T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~~~~~~v~~~~~l~~~~~~~l~~ll~~~~~~~----~~----~~~~~ 72 (1290)
T PRK05297 1 MLILRGSPALSAFRLQKLLARLQAAVLPVTSIYAEYVHFADLSAPLSAEEQAKLERLLTYGPAEH----EP----AGRLF 72 (1290)
T ss_pred CEEEcCCccCCHHHHHHHHHHHHhcCCCceEEEEEEEEEEecCCCCCHHHHHHHHHHhcCCcccc----CC----cccEE
Confidence 579999999999999 78899877789999999999998878999999999999999985431 11 13579
Q ss_pred EEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCccHHhhhhhe-eeecc--ccccCC---C--------
Q psy2354 80 EVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSRAIITKIV-LAEDK--AKYYSH---P-------- 145 (749)
Q Consensus 80 eV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~~~~~~~~-llhDr--E~~y~~---P-------- 145 (749)
+|+|||||+||||||||+|||+|||++|+||||+++|+|+. ..+.++++++. ++||| |++|.. +
T Consensus 73 ~v~pr~g~~~~~s~~a~~i~~~~g~~~~~rie~~~~~~~~~--~~~~~~~~~i~~~l~n~m~e~~~~~~~~~~~~~~~~~ 150 (1290)
T PRK05297 73 LVTPRPGTISPWSSKATDIAHNCGLAGIRRIERGIAYYVEA--ALSAEQRAALAALLHDRMTESVFADLDDAEALFSHHE 150 (1290)
T ss_pred EEEcCCCCCChhHHHHHHHHHHcCCccccEEEEEEEEEEcc--CCCHHHHHHHHHHhCCccceEEEcCcchhhhhhccCC
Confidence 99999999999999999999999998899999999999953 45556677788 99999 988754 1
Q ss_pred CCCCcccccCcC-ch-hHHhhccccCc-----------------------------------------------------
Q psy2354 146 SSPLQHPVDIQK-GN-VLKEIVEPVGA----------------------------------------------------- 170 (749)
Q Consensus 146 ~~pl~~~V~i~~-g~-aLe~~N~eLGL----------------------------------------------------- 170 (749)
.+|+.+ ||+++ ++ +|+++|+++||
T Consensus 151 p~~~~~-v~~~~~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~l~R~Ptd~El~~~~q~wSEHCrhk~F~~~~~id~~~~ 229 (1290)
T PRK05297 151 PKPLTS-VDVLGGGRAALEAANVELGLALAEDEIDYLVEAFTKLGRNPTDVELMMFAQANSEHCRHKIFNADWTIDGEEQ 229 (1290)
T ss_pred CCCceE-ECCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcCCccCCCceeecCccc
Confidence 155999 99999 99 99999999888
Q ss_pred -------------------------------------------------------eEEee--------------------
Q psy2354 171 -------------------------------------------------------VVFTE-------------------- 175 (749)
Q Consensus 171 -------------------------------------------------------~~~~~-------------------- 175 (749)
++||+
T Consensus 230 ~~~l~~~i~~t~~~~~~~~~~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~e~~~~~fK~ETHNhPsaiePf~GAaTG~G 309 (1290)
T PRK05297 230 PKSLFKMIKNTHETNPDGVLSAYKDNAAVMEGSKVGRFFPDPDTGRYGYHQEPAHILMKVETHNHPTAISPFPGAATGSG 309 (1290)
T ss_pred chHHHHHHHHHHHhCCCcEEEEecCCcEEEEcccccccccccccccccccccceEEEEEeccCCCCCccCCCCcccccCC
Confidence 23444
Q ss_pred --------------------eeeecCCCCCCccc-c--cccCcccccc------------------cCCccccccee---
Q psy2354 176 --------------------SFLLGDPSISTLEL-W--GAEYQENNAL------------------LCKPLHCKTLR--- 211 (749)
Q Consensus 176 --------------------~~~~~~l~~p~~~~-w--~~~~p~~~a~------------------fg~p~~~g~~r--- 211 (749)
|||||+|++|++.+ | ..+||.|+++ ||+|+++|++|
T Consensus 310 G~iRD~~~~G~Ga~piag~~~~~~~~l~~~~~~~~~e~~~~~P~~~~~p~~i~~~~~~Gis~~gn~~G~Pvv~G~Vs~yn 389 (1290)
T PRK05297 310 GEIRDEGATGRGSKPKAGLTGFSVSNLRIPGFEQPWEEDYGKPERIASALDIMIEGPLGGAAFNNEFGRPNLLGYFRTFE 389 (1290)
T ss_pred ceeccccccCCCCeeeecceeEEecCCCCCCCCCccccccCCccccCCHhHhhhhccccHHHHhhhhCCCccceEEEEEe
Confidence 99999999999988 9 5889999877 99999999995
Q ss_pred -----------------eEE----------------------EEeeCCccccccccc--cccccCCCCccCCCCccccCC
Q psy2354 212 -----------------MIS----------------------AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGD 250 (749)
Q Consensus 212 -----------------m~~----------------------v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gn 250 (749)
|+. |++||++|||||||+ ||+.+++.++++||++||++|
T Consensus 390 e~~~~~~~~~~~~i~P~~~vg~vG~i~~~~~~~~~~~~Gd~IvllG~~~~rdglgGs~~ss~~~g~~~~~~~~~~Vq~~d 469 (1290)
T PRK05297 390 QKVNSHNEEVRGYHKPIMLAGGIGNIRADHVQKGEIPVGAKLIVLGGPAMRIGLGGGAASSMASGQSSEDLDFASVQRGN 469 (1290)
T ss_pred ccccCccccccccccceEEEEEEEEEehhhccccCCCCCCEEEEECCCCCCCCccHHHHHHHHhcccccccccCCCCcCC
Confidence 222 899999999999999 899999888899999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC--CCceEEecccccCCCCcChhhhccccccccccc
Q psy2354 251 PEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNAL 328 (749)
Q Consensus 251 p~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l 328 (749)
|+|||++|++|++|++++ +.++|.+|||+|+||+++|++||+.. +|++|++++||+++++|+|+|||+|||||||++
T Consensus 470 ~~~ek~~~~~i~~~~~~~-~~~lI~s~hDvgaGGLa~AL~Ema~~~g~G~~idL~~vp~~~~~l~p~eil~SESQeRmlv 548 (1290)
T PRK05297 470 PEMERRCQEVIDRCWQLG-DDNPILSIHDVGAGGLSNAFPELVNDGGRGGRFDLRKIPNDEPGMSPLEIWCNESQERYVL 548 (1290)
T ss_pred HHHHHHHHHHHHHHHHhc-ccCCeeEEecCCccHHHHHHHHHHHhcCceEEEEeCCCccccCCCCHHHHHhccccceEEE
Confidence 999999999999999998 89999999999999999999999985 699999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccccCCCCCCCCcccccchhhhhcCCCcc------------
Q psy2354 329 LCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQK------------ 396 (749)
Q Consensus 329 ~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~~~~~~~~~~~~vdlp~~~l~~~~p~~------------ 396 (749)
+|+|++++.|+++|++++|++++||++|+++++++.+.. +++.++|+|++.|++++|+|
T Consensus 549 ~V~~e~~e~~~~i~~~~~l~~~vIG~vt~~~~l~v~~~~---------~g~~~vdl~~~~L~~~~p~~~~~~~~~~~~~~ 619 (1290)
T PRK05297 549 AIAPEDLELFEAICERERCPFAVVGEATEERHLTLEDSH---------FDNKPVDLPLDVLLGKPPKMHRDVKTVKAKGP 619 (1290)
T ss_pred EEcchhHHHHHHHHHhcCCCEEEEEEEeCCCeEEEEecC---------CCceEEEEEHHHhcCCCCceecCccccccccc
Confidence 999999999999999999999999999999999998743 56678888888888888765
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 620 ~~~~~~~~~~~~l~~vL~~pnV~SK~~l~~~~D~~V~g~tv~~p~vGp~q~p~~DaaV~~~~~~~~~g~ama~G~~P~~~ 699 (1290)
T PRK05297 620 ALDYSGIDLAEAVERVLRLPTVASKSFLITIGDRSVTGLVARDQMVGPWQVPVADCAVTAASYDGYAGEAMAMGERTPVA 699 (1290)
T ss_pred ccCCCCcCHHHHHHHHhcCCccccccchhhccCcccCCCEeecCCcCCCCCCCCCeEEEEecCCCCeEEEEEEcCCCCee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 700 ~~dP~~ga~~AV~EA~~Nlvaag~~~~~~i~ls~N~~~~~~~p~~~a~L~~av~a~~~e~c~~LgipiigGkdSmS~~t~ 779 (1290)
T PRK05297 700 LLDAAASARMAVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPGEDARLYDAVKAVGMELCPALGITIPVGKDSLSMKTK 779 (1290)
T ss_pred ccCHHHHHHHHHHHHHhhheecCCccccceEEEEEEeccCCCCchHHHHHHHHHHHHHHHHHHcCCCccccchhcCCccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 780 yne~~~~~~v~iPpTlvisa~g~v~dv~~~vTp~lkk~~g~~l~lI~lg~~~~~lGGS~laq~~~~~g~~~P~v~d~~~l 859 (1290)
T PRK05297 780 WQEGGEDKEVTSPLSLIISAFAPVEDVRKTLTPQLRTDKDTALLLIDLGRGKNRLGGSALAQVYNQLGDKAPDVDDAEDL 859 (1290)
T ss_pred cccCCCCCcceeCCccEEEEEEEecCcccccCcccccCCCCEEEEEECCCCcccchHhHHHHHhhhhcCCCCCCCCHHHH
Confidence
Q ss_pred ---------------------------------ccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHH
Q psy2354 397 ---------------------------------MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLE 443 (749)
Q Consensus 397 ---------------------------------MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~ 443 (749)
||||+++|++|+++.. ..++.+.||||++|+|+||+++++++|++
T Consensus 860 k~~~~~v~~li~~glv~S~HDvSdGGL~~aLaEMAfa~~~G~~Idl~~i--~~~~~~~LFsE~~G~vveV~~~~~~~v~~ 937 (1290)
T PRK05297 860 KGFFNAIQALVAEGLLLAYHDRSDGGLLTTLAEMAFAGHCGLDIDLDAL--GDDALAALFNEELGAVIQVRAADRDAVEA 937 (1290)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCcCHHHHHHHHHHhhCCCcEEEEeCCC--CchHHHHHhCCCceEEEEEehHHHHHHHH
Confidence 9999999999999853 13568899999999999999999999999
Q ss_pred HHHHcCC--CeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcc
Q psy2354 444 QFKAANV--SCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ 521 (749)
Q Consensus 444 ~~~~~gv--~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~ 521 (749)
+|+++|+ ++++||+|++ + +.++|+.+++.+++.++++|++.|++|||+||++|+||.|+++|++.+.++.+|+|+
T Consensus 938 ~l~~~gi~~~~~~IG~vt~-~--~~l~I~~~~~~~~~~~l~eL~~~W~~ts~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 1014 (1290)
T PRK05297 938 ILAEHGLSDCVHVIGKPNA-G--DRIVITRNGKTVFSESRTELRRWWSETSYQMQRLRDNPECADQEFDAILDQADPGLN 1014 (1290)
T ss_pred HHHHcCCCCCCeEEEEECC-C--ceEEEEeCCeeEeeccHHHHHHHHHhhHHHhcccccCchhHHHHHhhhccccCCCcc
Confidence 9999999 9999999987 6 789998899999999999999999999999999999999999999988777777664
Q ss_pred ----cCC--------------Ccc-------------------------------ccc--cccCC------------Ccc
Q psy2354 522 ----YQP--------------VRD-------------------------------DIV--GATLG------------KKD 538 (749)
Q Consensus 522 ----f~p--------------PkV-------------------------------Dl~--~~sLd------------ygD 538 (749)
|++ ||| |+. +.+|+ |||
T Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD 1094 (1290)
T PRK05297 1015 VKLTFDPNEDIAAPFIATGARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGD 1094 (1290)
T ss_pred cccccCcccccccccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcc
Confidence 322 455 433 22342 999
Q ss_pred cccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccC-ccccCcCCcCcccccccccccCCCcceeeeEE
Q psy2354 539 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG-WFSVSTQDKNNLVTDVMLSHNNSERFECRYST 617 (749)
Q Consensus 539 vlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~-lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~ 617 (749)
+||||++||+++++|+.++++|.+||+|+|||+||||||||+|+++| ++| +. ++|| +|++|.|+||||||++
T Consensus 1095 ~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p---~~--~~~p--~l~~N~s~rfesr~~~ 1167 (1290)
T PRK05297 1095 VLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIP---GA--EHWP--RFVRNRSEQFEARFSL 1167 (1290)
T ss_pred cchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccC---CC--CCCC--eEeecCCCCeEEeeeE
Confidence 99999999999999999999999999999999999999999999997 777 44 6799 9999999999999999
Q ss_pred EEecCCCcccccCCCCceeeEEeecccceeeEee
Q psy2354 618 VKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGAA 651 (749)
Q Consensus 618 V~I~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~a 651 (749)
|+|++++|+||++|+|+++||||+|||||+.+..
T Consensus 1168 ~~v~~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~ 1201 (1290)
T PRK05297 1168 VEVQESPSIFLQGMAGSRLPIAVAHGEGRAEFPD 1201 (1290)
T ss_pred EEECCCCChhHhhcCCCEEEEEEEcCcccEEcCH
Confidence 9999999999999999999999999999998754
No 5
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=100.00 E-value=6.8e-88 Score=813.54 Aligned_cols=586 Identities=18% Similarity=0.192 Sum_probs=480.1
Q ss_pred CCCCChHHH--HHHhhcC--CCCccEEEEEEEEEEecCCCCCHHHHHHHH-HhhcCcccccccCCCcccCCCCcEEEEec
Q psy2354 9 KPGIGAGEK--TKKLKAV--PKVISDIESELCYNIEISRELTPVELDKLH-WILNSSFECRKLSSHTNFKDNSNVIEVGP 83 (749)
Q Consensus 9 ~~als~~~~--l~~i~~~--~~~v~sv~te~~y~V~~~~~l~~~~~~~L~-~LL~~~~~~~~~~~~s~~~~~~~~veV~P 83 (749)
.+++..... +++|+.. -.++.+|+.-.+|-|+ + +++++.+++. .+|++|+.+......+.......+|+|.+
T Consensus 8 k~~~d~~~~~l~~~~~~~l~~~~l~~vr~~~~y~i~--~-~~~~~~~~~~~~v~sep~~d~~~~~~~~~~~~~~~~~v~~ 84 (1239)
T TIGR01857 8 KAGFDVESQSLVKELRHNLGLSSLKDLRIVNVYDVF--D-LAEELFAPTVKTIFSEPVTDHVLDELSVQADLAKFFAVEF 84 (1239)
T ss_pred cccccHHHHHHHHHHHHHcCCCccceEEEEEEEEcc--C-CCHHHHHHHhcCcCCCCCcceEecccccccCCceEEEEEe
Confidence 345444333 6778873 3358889999999997 5 9999999998 79999988875443221112457899999
Q ss_pred CCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCccHHhhhhhe--eeecc-ccc--cCCCC---------CCC
Q psy2354 84 RLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSRAIITKIV--LAEDK-AKY--YSHPS---------SPL 149 (749)
Q Consensus 84 R~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~~~~~~~~--llhDr-E~~--y~~P~---------~pl 149 (749)
+||.+++-+.+|....+.+-=..-.+|.+++.|+|+. ..+.++++++. ++|+- ++. ...|. +++
T Consensus 85 lPG~~D~ra~sa~q~i~~l~~~~~~~v~t~~~y~~~g--~~~~~~~~~i~~~~iN~v~~r~~~~~~~~~~~~~~~~~~~v 162 (1239)
T TIGR01857 85 LPGQFDQRADSAQECILLLSESEDVTVNTAKLYILNG--DLDDEELNKIKNYYINPVDSREKDLTTGKALEEFSESPKEV 162 (1239)
T ss_pred CCCCcCcHHHHHHHHHHHhcCCCCceEEEEEEEEEec--CCCHHHHHHHHHHcCChHHheeecccCccchhhhccCCCCc
Confidence 9999999999999999986334467899999999975 35557778877 77777 332 22122 337
Q ss_pred cccccCc-C-ch-hHHhhccccCc--------------------------------------------------------
Q psy2354 150 QHPVDIQ-K-GN-VLKEIVEPVGA-------------------------------------------------------- 170 (749)
Q Consensus 150 ~~~V~i~-~-g~-aLe~~N~eLGL-------------------------------------------------------- 170 (749)
.+ ++.+ + ++ +|+++|+++||
T Consensus 163 ~~-~~~f~~~~~~~L~~~~~e~gLAl~~~di~~i~~yF~~~~R~PTd~El~~laq~wSeHCRH~~F~~~i~~~~~~~~~~ 241 (1239)
T TIGR01857 163 ET-LTGFESYDAEDLAKFKAEQGLAMSLEDLKFIQDYFKSIGRNPTETEIKVLDTYWSDHCRHTTFETELKHVTFSDSKF 241 (1239)
T ss_pred ee-ecccccCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCChhheeeccccchhhhcCccccceecceecccchh
Confidence 77 8863 6 88 99999999999
Q ss_pred ------------------------------------------------------------------------eEEee---
Q psy2354 171 ------------------------------------------------------------------------VVFTE--- 175 (749)
Q Consensus 171 ------------------------------------------------------------------------~~~~~--- 175 (749)
++||+
T Consensus 242 ~~~i~~~~~~y~~~r~~~~~~~~~~~l~d~ati~~k~~~~~~~~~~~d~s~~ina~~~~v~v~~~~~~e~~~v~fK~ETH 321 (1239)
T TIGR01857 242 QKQLKKAYEDYLAMREELGRSEKPVTLMDMATIFAKYLRKNGKLDDLEVSEEINACSVEIEVDVDGVKEPWLLMFKNETH 321 (1239)
T ss_pred HHHHHHHHHHHHhhhhhcCCcCcchhHHHHHHHHHHHhhccccccccchhhhhccCceEEEEEEEEEecceEEEEEEccC
Confidence 34444
Q ss_pred ---------------------------eeeecCCCCCCccc-cc------ccC--cccccc------------cCCcccc
Q psy2354 176 ---------------------------SFLLGDPSISTLEL-WG------AEY--QENNAL------------LCKPLHC 207 (749)
Q Consensus 176 ---------------------------~~~~~~l~~p~~~~-w~------~~~--p~~~a~------------fg~p~~~ 207 (749)
+|++.+|++||+.+ |. .++ |.+|.. ||+|++.
T Consensus 322 NHPSaIePf~GAATGvGG~IRD~lsg~a~~~~~Lr~~g~g~p~~~~~~~~~gklp~r~I~~gv~~G~s~YGN~~GvpTg~ 401 (1239)
T TIGR01857 322 NHPTEIEPFGGAATCIGGAIRDPLSGRSYVYQAMRVTGAGDPTVPISETLKGKLPQRKITTTAAHGYSSYGNQIGLATGQ 401 (1239)
T ss_pred CCCCccCCCCcccccCCchhccccccceeeecccccCCCCCCCccccccccCCCchhhhhhhcccceeccCcccCCceee
Confidence 99999999999988 92 123 334443 9998876
Q ss_pred ccee---------eEE-----------------------EEeeCCccccccccc--cccccCCCCccCCCCccccCChHH
Q psy2354 208 KTLR---------MIS-----------------------AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEM 253 (749)
Q Consensus 208 g~~r---------m~~-----------------------v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~ 253 (749)
|-.. |.. |++||+||||||||| ||+.+++++.++||++||+|||+|
T Consensus 402 g~~~f~~~Y~~~~lv~~~~vG~~~~~~v~k~~~~~Gd~iv~~Gg~tGRdGigGat~SS~~~~~~s~~~~~~aVQ~Gdp~~ 481 (1239)
T TIGR01857 402 VSEIYHPGYVAKRMEVGAVVAATPKENVVREKPEPGDVIILLGGKTGRDGIGGATGSSKEHTVESLELCGAEVQKGNAPE 481 (1239)
T ss_pred EEEEEecCCCCCceEEEEEEEeecHHHhccCCCCCCCEEEEECCCCCcCcccchhhhhhhccccccccccCccCcCCHHH
Confidence 6443 221 999999999999999 999999998899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccCCCceEEecccccCCCCcChhhhcccccccccccccCcc
Q psy2354 254 GQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEPVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPL 333 (749)
Q Consensus 254 e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~ 333 (749)
||++|++++.+. +.++|.+|||+|+||+++|++||+. |++|+|++||+++++|+|+|||+|||||||+++|+|+
T Consensus 482 Ekkl~e~i~~a~----~~glI~s~hD~gaGGLavAlaEma~--G~~IdL~~vp~~~~gl~p~EiLfSESQeRmlv~V~pe 555 (1239)
T TIGR01857 482 ERKIQRLFRNGN----VTRLIKKCNDFGAGGVSVAIGELAD--GLEIDLNKVPKKYEGLNGTELAISESQERMAVVVSPE 555 (1239)
T ss_pred HHHHHHHHHHHH----hCCCEEEEeecchhHHHHHHHHHhC--CEEEEcCCCccccCCCCHHHHhhCCcCCeEEEEEChh
Confidence 999999888877 6789999999999999999999997 9999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccccCCCCCCCCcccccchhhhhcCCCcc-----------------
Q psy2354 334 HCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQK----------------- 396 (749)
Q Consensus 334 ~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~~~~~~~~~~~~vdlp~~~l~~~~p~~----------------- 396 (749)
+++.|+++|++|++++++||++|+++++++.| .++.++|||+++|++++|++
T Consensus 556 ~~e~f~~i~~~~~l~~~vIG~vt~~~~l~v~~-----------~g~~v~dL~~~fL~~~gp~~~~~~~~~~~~~~~~~~~ 624 (1239)
T TIGR01857 556 DVDAFLAYCNEENLEATVVATVTEKPRLVMNW-----------NGKTIVDLSRRFLDTNGVRQVIDAKVVDKDVKLPEER 624 (1239)
T ss_pred hHHHHHHHHHHCCCCEEEEEEECCCCeEEEEe-----------CCceEEEeeHHHHcCCCCCCeeecccccccccccccc
Confidence 99999999999999999999999999999998 67889999999998766542
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 625 ~~~~~~~~~~~l~~vL~~pnVaSK~~l~~qyD~~V~g~TV~~P~gG~~q~~~~DaaV~~~~~~~g~t~~g~ams~g~nP~ 704 (1239)
T TIGR01857 625 QKTSAETLEEDWLKVLSDLNVASQKGLQERFDSSVGAGTVLMPLGGKYQLTPTEASVAKLPVLGGETHTASAIAWGFNPY 704 (1239)
T ss_pred CCCCCcCHHHHHHHHhcCCcccchhhhhhhcCcccCCCeeeCCCCCCcCCCCcceEEEEeeccCCCCCeEEEEEecCCCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 705 ~~~~dPy~ga~~AV~EA~rNlva~G~~~~~i~Lnf~~~F~k~p~~p~~w~~~~~al~ga~~a~~~lgipvigGKdSmsn~ 784 (1239)
T TIGR01857 705 IAEWSPYHGAAYAVIESLAKLVAAGADYKKARLSFQEYFEKLDKDAERWGKPFAALLGAIKAQIDLGLPAIGGKDSMSGT 784 (1239)
T ss_pred eeccCHHHHHHHHHHHHHhhhheeCCcHHHEEEecccccccCCCChhHHhHHHHHHHHHHHHHHHhCCCCCcceecCccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 785 ~~~v~iPPTlvi~avgv~Dv~~~vt~~~K~~G~~i~lig~~~~~~g~~d~~~~k~~~~~v~~li~~g~v~s~hDvS~GGL 864 (1239)
T TIGR01857 785 FEELTVPPTLISFAVTTANSRRVISPEFKAAGENIYLIPGQALEDGTIDFDLLKENFAQIEELIADHKVVSASAVKYGGV 864 (1239)
T ss_pred cCCeeeCCccEEEEEeccCHhhccChhhccCCCEEEEEcCCcccCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcChH
Confidence
Q ss_pred ------ccccCCccEEEEcCCCCCCCcHHHHhhccccc-cEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEE
Q psy2354 397 ------MAFAGLSGMTVDIPSDVTTSEVLELLFAEELG-WLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISV 469 (749)
Q Consensus 397 ------MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G-~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I 469 (749)
|||+|++|++|+++. .+.||||++| +|+||+++. .++++.+||++++ + .+|
T Consensus 865 ~vaLaEMaf~g~~G~~i~l~~-------~~~LFsE~~gr~vvev~~~~----------~~~~~~~IG~v~~-~----~~l 922 (1239)
T TIGR01857 865 AESLAKMTFGNRIGAELNNPE-------LEDLFTAQYGSFIFESPEEL----------SIANVEKIGQTTA-D----FVL 922 (1239)
T ss_pred HHHHHHHHhcCCceEEEecCc-------HHHhhCCCCceEEEEEChhh----------cCCcceEEEEECC-c----cEE
Confidence 999999999999862 3789999996 899998751 2788999999987 4 345
Q ss_pred EECCEEEEEecHHHHHHHhhhhhHHH--HHhhcccchhhHhhhhhcccCCCCcc------cCCCcc--------------
Q psy2354 470 AVNNEPVLNEDLGTLFLIWERTSYEL--EKLQMNARCADEEYNSLVTRIGPKYQ------YQPVRD-------------- 527 (749)
Q Consensus 470 ~~~g~~v~~~~~~~L~~~W~~ts~~~--~~l~~np~~~~~e~~~~~~~~~p~~~------f~pPkV-------------- 527 (749)
.+++ .++++++|+++|++|++++ ++++++|+|++.. +...|... ..+|||
T Consensus 923 ~~~~---~~~~~~~L~~~w~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~kpkvaIl~~pGtNce~d~ 994 (1239)
T TIGR01857 923 KVNG---EKLDLEELESAWEGKLEEVFPSKFEDKKETVEVP-----AVASEKKVIKAKEKVEKPRVVIPVFPGTNSEYDS 994 (1239)
T ss_pred EECC---EEeeHHHHHHHHHHHHHHHHHHhhccchhhhhcc-----ccCCccceeccccCCCCCeEEEEECCCCCCHHHH
Confidence 5666 6779999999999999999 7778888876310 00111111 122444
Q ss_pred -----------------ccc--c---------ccCC------------CcccccchHHHHHhhccChhHHHHHHHHHhCC
Q psy2354 528 -----------------DIV--G---------ATLG------------KKDALGSAKGWAASLLLNEGIKTQLNKFIARS 567 (749)
Q Consensus 528 -----------------Dl~--~---------~sLd------------ygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~ 567 (749)
|+. + .+|+ |||+|+++.+|++++++|+.++++|.+|++ +
T Consensus 995 a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~-~ 1073 (1239)
T TIGR01857 995 AKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLA-R 1073 (1239)
T ss_pred HHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHh-C
Confidence 333 1 1231 999996665699999999999999999998 7
Q ss_pred CCeeEeeechhhhhhccCccccCcCC-cCcccccccccccCCCcceeeeEEEEecCCCcccccCCC-CceeeEEeecccc
Q psy2354 568 DTFSFGVCNGCQLMNLLGWFSVSTQD-KNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLE-NSVLGVWVAHGEV 645 (749)
Q Consensus 568 dtf~LGICnGcQ~L~~~~lIp~~~g~-~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~-Gsvlpi~vaHGeG 645 (749)
|||+||||||||+|+++||+|+++.. .+++|| +|++|.|+||||||++|+|.+++|+|+++|+ |++++||||||||
T Consensus 1074 d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p--~l~~N~s~rf~~r~v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEG 1151 (1239)
T TIGR01857 1074 DGLILGICNGFQALVKSGLLPYGNIEAANETSP--TLTYNDINRHVSKIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEG 1151 (1239)
T ss_pred CCcEEEechHHHHHHHcCCCcCccccccccCCc--eeeecCCCCeEEeeeEEEECCCCChhHhcCCCCCEEEEEeEcCCc
Confidence 99999999999999999999964322 347899 9999999999999999999999999999998 9999999999999
Q ss_pred eeeEe
Q psy2354 646 MLRGA 650 (749)
Q Consensus 646 r~~~~ 650 (749)
|+.+.
T Consensus 1152 rf~~~ 1156 (1239)
T TIGR01857 1152 RFVAS 1156 (1239)
T ss_pred ceecC
Confidence 98764
No 6
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=6e-77 Score=681.17 Aligned_cols=369 Identities=25% Similarity=0.357 Sum_probs=299.4
Q ss_pred eeeecCCCCCCcccc-cccCcccccc----cCCccccccee----------eEE-----------------------EEe
Q psy2354 176 SFLLGDPSISTLELW-GAEYQENNAL----LCKPLHCKTLR----------MIS-----------------------ARE 217 (749)
Q Consensus 176 ~~~~~~l~~p~~~~w-~~~~p~~~a~----fg~p~~~g~~r----------m~~-----------------------v~~ 217 (749)
+|.||.|..|.. +| --+=|.-||. ||+|++.|||| |.+ |++
T Consensus 140 ~l~fG~~~~~~~-~~i~~gvv~Gia~YGN~iGvPtv~Ge~~fd~~y~~npLvna~~vG~i~~~~i~~~~a~~~G~~li~~ 218 (743)
T COG0046 140 SLRFGIPDIEKT-RYIMKGVVAGIAAYGNEIGVPTVGGEFRFDESYVGNPLVNAGCVGLIRKEHIVKGEAIGPGDKLILL 218 (743)
T ss_pred ccccCCCCCchh-hhHHhccccchhhcCccccccccceEEEEccccCCCceEEEEEeeecchhheeeccCCCCCCEEEEE
Confidence 788884443321 15 2233444555 99999999999 333 999
Q ss_pred eCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC
Q psy2354 218 KCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP 295 (749)
Q Consensus 218 Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~ 295 (749)
||+||||||||| ||+.++++++++||++||+|||||||+|||+++.|+ +.|+|++|||+||||++||++||+++
T Consensus 219 Gg~TgrDGigGat~aS~~~~~~~~e~dr~aVQvGdPf~Ek~l~ea~le~~----~~~~I~~i~DlGAgGLs~A~~Ela~~ 294 (743)
T COG0046 219 GGKTGRDGIGGATFASMELGEESEEEDRPSVQVGDPFMEKRLQEAILECV----QTGLIKGIQDLGAGGLSCAISELAAK 294 (743)
T ss_pred cCCccccccCchhhhhhhhCcchhhhcCCccccCChHHHHHHHHHHHHHH----hcCCeEEEeccCCchhhhhHHHHHhc
Confidence 999999999999 999999889999999999999999999988888888 67899999999999999999999996
Q ss_pred --CCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccccCC
Q psy2354 296 --VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSN 373 (749)
Q Consensus 296 --~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~~~~ 373 (749)
.|++|+||+||+++|+|||+|||||||||||+++|.|+|++.|.+||+||+||++|||++|+++++++.|
T Consensus 295 gg~G~~i~Ld~VP~rE~gMsp~Ei~~SESQERMllvv~p~~~e~~~~i~~k~~l~~aVVG~vT~~~~~~~~~-------- 366 (743)
T COG0046 295 GGLGAEIDLDKVPLREPGMSPYEIWLSESQERMLLVVAPEDVEEFLEICEKERLPAAVVGEVTDEPRLVVDW-------- 366 (743)
T ss_pred cCCeEEEEhhcCcccCCCCCHHHHHHhccchheEEEEccccHHHHHHHHHHcCCCeEEEEEEecCceEEEEE--------
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccccchhhhhcCCCccccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHHHHHHcCCCee
Q psy2354 374 PSSPLQHPVDIQMELICGKMPQKMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCK 453 (749)
Q Consensus 374 ~~~~~~~~vdlp~~~l~~~~p~~MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~gv~~~ 453 (749)
.++.++|||+++|.+++|++ +-+.. . +.... .
T Consensus 367 ---~ge~v~dlP~~~L~~~aP~~-----------~r~~~--------------------~-~~~~~-----------~-- 398 (743)
T COG0046 367 ---KGEPVVDLPIDVLAGKAPKY-----------DRPVK--------------------E-PKKEE-----------A-- 398 (743)
T ss_pred ---CCCEEEeccHHHHcCCCCee-----------ecccc--------------------c-ccccc-----------c--
Confidence 78999999999999999872 11100 0 00000 0
Q ss_pred EeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcccCCCcccccccc
Q psy2354 454 KIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQPVRDDIVGAT 533 (749)
Q Consensus 454 ~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~f~pPkVDl~~~s 533 (749)
.+ . + . |.
T Consensus 399 -----~~-~---------------------------------------~--------------~-------~~------- 405 (743)
T COG0046 399 -----GD-V---------------------------------------P--------------E-------PE------- 405 (743)
T ss_pred -----cc-c---------------------------------------C--------------C-------CC-------
Confidence 00 0 0 0 00
Q ss_pred CCCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCccee
Q psy2354 534 LGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFEC 613 (749)
Q Consensus 534 LdygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEs 613 (749)
-+.+.+.+.+++.+|+ | +.+.||+. ||++
T Consensus 406 -------------------~~~l~~a~~~vL~~p~-----v-------ask~~l~~--------------------qyD~ 434 (743)
T COG0046 406 -------------------EPDLEEALLKVLSSPN-----V-------ASKEWLYE--------------------QYDR 434 (743)
T ss_pred -------------------cccHHHHHHHHhcCcc-----h-------hhhcceee--------------------ecce
Confidence 0125566777777776 3 35678882 3443
Q ss_pred eeEEEEecCCCcccccC--CCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCcccc
Q psy2354 614 RYSTVKIMKSPAIMLRN--LENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDV 691 (749)
Q Consensus 614 r~~~V~I~~s~Sv~l~g--m~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v 691 (749)
+| +..++.-+| .+.+++.+-..+|.+. +.|+++|+||+|+++|||+||++||+||+|||+|+|+.|++ +
T Consensus 435 ---~V---~~~Tv~~pG~~~DaaV~r~~~~~~~~~--g~A~t~~~np~~~~ldpy~Ga~~aVaEa~rNl~a~Ga~pla-~ 505 (743)
T COG0046 435 ---SV---GGNTVVDPGPVADAAVLRISEDSGTGK--GLAMTTGENPRYALLDPYAGAKLAVAEALRNLAATGAKPLA-L 505 (743)
T ss_pred ---ee---ccceeecCCCCcceEEEEecccCCCcc--eEEEEcCCCCcceEEChhHHHHHHHHHHHHHHHhhCCcchh-h
Confidence 22 334455555 7788888877667664 89999999999999999999999999999999999998888 5
Q ss_pred ccccccccccCCCCChHHHHH---HHHHHHHHHHHcCccccccccCccceEecC
Q psy2354 692 KCSGNWMWAAKLPGEGAALFD---ACQAMCDIMGEFGIAVDGGKDSLSMAARVG 742 (749)
Q Consensus 692 ~~~~Nf~~~~~~P~~~~~l~~---a~~gl~d~~~~lg~PvvgGkdSls~~~~~~ 742 (749)
+.|+|| ++|++|+.+|+ |++|+.|+|++|++||+||||||||+++|+
T Consensus 506 ~d~lnf----g~pe~pE~~~q~~~a~~g~~eac~~l~~pvv~GnvSlynet~~~ 555 (743)
T COG0046 506 TDNLNF----GNPEKPEVMGQFVAAVAGLAEACRALGIPVVGGNVSLYNETNGQ 555 (743)
T ss_pred hhhhcc----CCCCChhhhhHHHHHHHHHHHHHHHhCCCcccceeeeeeccCCc
Confidence 445555 77777766554 999999999999999999999999999987
No 7
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=100.00 E-value=8.5e-75 Score=708.75 Aligned_cols=422 Identities=22% Similarity=0.233 Sum_probs=347.6
Q ss_pred cCCccccccee----------------eEE----------------------EEeeCCcccccccccc-ccccCCCCccC
Q psy2354 201 LCKPLHCKTLR----------------MIS----------------------AREKCPVQFVGVVTGS-NKVQGDNAADL 241 (749)
Q Consensus 201 fg~p~~~g~~r----------------m~~----------------------v~~Gg~~~r~G~gG~S-s~~~~~~~~~~ 241 (749)
||+|+++|||| ||+ |+||||+||||+|||. |
T Consensus 236 ~G~P~i~Gf~r~~~~~~~~~~~~~kpim~~G~lg~i~~~~~~k~~~~~G~~iV~lGg~~~~~G~~G~~~s---------- 305 (1202)
T TIGR01739 236 SGVPTCGGFIRLISKNKLSLPTPYTPTYNTSILDRLCHVTINTADEPPGQDIVALGQFEPSLLPDTPPLL---------- 305 (1202)
T ss_pred cCCCccceEEEEecccccccccCCCCeEEccccCCCChhhcccccCCCCCEEEEECCCCCCCCCCCCccc----------
Confidence 99999999999 555 9999999999999992 1
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhCCCCCCCE--EEEcccCcccccccccccccCCCceEEecccccCC----CCcChh
Q psy2354 242 DFDAVQRGDPEMGQKLNRVIRACIELPNNLNPI--ESIHDQGAGGNGNVLKEIVEPVGAVVFTESFLLGD----PSISTL 315 (749)
Q Consensus 242 ~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i--~~i~D~GaGG~~na~~El~~~~G~~i~l~~v~~~~----~~ms~~ 315 (749)
.++||+|++++|++|+.|++++ .|++ .+|||+||||++|+++||+++.|++|+|+++|... +.|+++
T Consensus 306 -----~~~s~~~~~~iq~~i~~~~~~~--~~~~i~~sI~D~Gagg~sn~l~El~~~~G~~i~L~~lP~~~~s~L~~~~~~ 378 (1202)
T TIGR01739 306 -----YADSPLDVNKILTALALLTDDV--KTPCIVGSIRPLGPCSVKEHLTALLPPCGAELDLSNLPDEVVAALARSSPA 378 (1202)
T ss_pred -----cCCCHHHHHHHHHHHHHHHHhc--cCCeeEEEecCCCCchHHHHHHHHhccCceEEEhHhCCchhhccccCCChh
Confidence 1789999999999999999875 3477 99999999999999999999999999999999997 778888
Q ss_pred hh----------cccccccccccccCc----------ccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEecccccc--C-
Q psy2354 316 EL----------WGAEYQENNALLCKP----------LHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYY--S- 372 (749)
Q Consensus 316 eI----------~~sEsQEr~~l~v~~----------~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~~--~- 372 (749)
++ |||||||||+|+|+| ++++.|++||+|||||++|||++|+++++++.|+.|.+. .
T Consensus 379 ~~e~~e~~v~~~~~N~~~~~~~LaV~~~~~~~~~~~~~~l~~~~~ic~re~cp~~vlG~~t~~~~l~v~~~~~~~~~~~v 458 (1202)
T TIGR01739 379 NRVENEKMVKQYFLNVVCSVVFLTVKNTPHNTGTEGVTPLERLKTACRMFGCPVKVLGKLVPLPGLHIVSDLFNPVPTYP 458 (1202)
T ss_pred hhHHHHHHhhhhcccccceeEEEEECCcccccccccchHHHHHHHHHHHCCCCEEEEEEEeCCCcEEEEeCCCCCCCCCc
Confidence 77 999999999999999 899999999999999999999999999999998754320 0
Q ss_pred ---------------C-----------------------------------CCC---------------------CCCcc
Q psy2354 373 ---------------N-----------------------------------PSS---------------------PLQHP 381 (749)
Q Consensus 373 ---------------~-----------------------------------~~~---------------------~~~~~ 381 (749)
. |.. .+.-|
T Consensus 459 d~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~vL~~P~V~SK~~i~~q~Dr~V~G~tv~~pgVGP 538 (1202)
T TIGR01739 459 TFDFTSFTPTSPLLPLGGPEPVSRTRPMFLDESLNWQTLNLRSTILKILSHPTVGSKEFIVRHIDRCGNGRVAQQQGVGP 538 (1202)
T ss_pred cchhhhccCCCCCcccccccccccccccccCCCCCCCccCHHHHHHHHhcCCcccchhhHhhhcCceeCCceeccCCcCC
Confidence 0 000 12223
Q ss_pred cccchh---hhhc--C-------------------------------C---C-cc-------------------------
Q psy2354 382 VDIQME---LICG--K-------------------------------M---P-QK------------------------- 396 (749)
Q Consensus 382 vdlp~~---~l~~--~-------------------------------~---p-~~------------------------- 396 (749)
.|+|+. ++.- + . + ..
T Consensus 539 ~d~PvaD~aVv~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~a~a~Ge~p~~~~~DP~~ga~~AV 618 (1202)
T TIGR01739 539 LDLPVSDYSLVLHNLSRPTDTTEVTYSENAMDLILDPDSWLYSWENEVLENPALSCVCSALGEQTYKVQADPKRGATYAI 618 (1202)
T ss_pred CCCCCCCeEEEEecccccccccccccccccccccccccccccccccccccCCCceEEEEecCCCceEEEcCHHHHHHHHH
Confidence 344411 0000 0 0 0 01
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 619 ~Ea~~Nlaaa~~~~l~pi~lt~n~~~P~~~~~~~~L~~av~ai~e~C~~Lgipiv~G~~S~s~~~~~v~~Ptptivisa~ 698 (1202)
T TIGR01739 619 TEALLNLSLSPWNTLEDVIITLSVTWSPTDHVYSLLKDALRACKDFCEELGVSFTVTSAASSPTQDSGSAPFMSIVFSAS 698 (1202)
T ss_pred HHHHHHHHhCCccccCCcEEEEEecCCCCCchHHHHHHHHHHHHHHHHHcCCcEEeeeccccCCCCCccCCCCeEEEEEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 699 a~v~dv~k~vTp~lk~~G~~L~LIg~t~~~~LgGS~laq~~~~~~~~~P~vd~~~lk~~~~~v~~li~~glI~S~HDvSd 778 (1202)
T TIGR01739 699 CPVLLSAKKITPDLKSHGSHLIWLSLHPSYTLAGSIFEQILGLSFIRLPALSPVSLKKLLSALQTLVKEGVIVSGHDVSD 778 (1202)
T ss_pred EEecCHHhCcCcccCCCCCEEEEEcCCCCCCchHhHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence
Q ss_pred ---------ccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEE
Q psy2354 397 ---------MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKI 467 (749)
Q Consensus 397 ---------MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i 467 (749)
|||||++|++|+++. +++|++.||||++|+|+||+++++++|+++|+++|+++++||++++.+.++++
T Consensus 779 GGL~~aLaEMA~ag~~G~~Idl~~---~~~p~~~LFSEs~G~VieV~~~~~~~v~~~l~~~gi~~~vIG~vt~~~~~~~l 855 (1202)
T TIGR01739 779 GGLVACVAEMALSGGKGVRITLPH---GTDPLEFLCSETPGVVIEVDPSSMYAVLQFLRSEGLVFQVIGRVGESGPSPTF 855 (1202)
T ss_pred CHHHHHHHHHHHhCCCcEEEEeCC---CCCHHHHHhCCCCcEEEEEchhHHHHHHHHHHHCCCCeEEEEEECCCCCCcEE
Confidence 999999999999983 36899999999999999999999999999999999999999999862134789
Q ss_pred EEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCc---------ccC-------------CC
Q psy2354 468 SVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKY---------QYQ-------------PV 525 (749)
Q Consensus 468 ~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~---------~f~-------------pP 525 (749)
+|+++|+.++++++++|+++|++|||+|+++|.+..+.++ .+. .+|++ +|. +|
T Consensus 856 ~I~~~~~~l~~~~l~~L~~~W~~ts~~~~~~~~~~~~~~~-~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p 930 (1202)
T TIGR01739 856 SVVHNSTVLFQEPLSLLQGTWRSFSDEENTLLCPNLEPRE-MHV----LDYGYNEMDFGGVPKGLPLSPLRFFTCPDPRH 930 (1202)
T ss_pred EEEECCEEEEEecHHHHHHHHHHHHHHHHhhhcchhhhhh-hcc----cCcCcchhhcccccccCcccccccccCCCCCC
Confidence 9999999999999999999999999999999954444322 221 12211 011 25
Q ss_pred cc-------------------------------ccc-cccCC------------CcccccchHHHHHhhccChhHHHHHH
Q psy2354 526 RD-------------------------------DIV-GATLG------------KKDALGSAKGWAASLLLNEGIKTQLN 561 (749)
Q Consensus 526 kV-------------------------------Dl~-~~sLd------------ygDvlgsgkgwa~siL~n~~~~~~f~ 561 (749)
|| ||+ ...|+ |||++|||++||+++++|+.++++|.
T Consensus 931 ~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~ 1010 (1202)
T TIGR01739 931 QVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLL 1010 (1202)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHH
Confidence 55 444 12342 99999999999999999999999999
Q ss_pred HHHhCCCCeeEeeec-hhhhhhccCccccCcCCc-------CcccccccccccCCCcceeeeEEEEecC-CCcccccCCC
Q psy2354 562 KFIARSDTFSFGVCN-GCQLMNLLGWFSVSTQDK-------NNLVTDVMLSHNNSERFECRYSTVKIMK-SPAIMLRNLE 632 (749)
Q Consensus 562 ~f~~r~dtf~LGICn-GcQ~L~~~~lIp~~~g~~-------~~~~p~~~~~~N~s~rfEsr~~~V~I~~-s~Sv~l~gm~ 632 (749)
+||+|+|||+||||| |||+|+++||||+.++.. ...|| +|++|+|+||||||++|+|++ |+||||++|+
T Consensus 1011 ~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~~~--~l~~N~s~~fesr~~~v~i~~~s~si~~~~~~ 1088 (1202)
T TIGR01739 1011 TFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEVQEPP--RLEKNASGLYESRWLNFYIPETTKSVFLRPLR 1088 (1202)
T ss_pred HHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccccCCc--eeeecCCCCeEEeeeEEEeCCCCCChhhhhcC
Confidence 999999999999999 999999999998654321 02488 999999999999999999998 9999999999
Q ss_pred CceeeEEeecccc-eeeEe
Q psy2354 633 NSVLGVWVAHGEV-MLRGA 650 (749)
Q Consensus 633 Gsvlpi~vaHGeG-r~~~~ 650 (749)
|++||+|+ ||++ ++.+.
T Consensus 1089 g~~lp~wv-~g~~~g~~~~ 1106 (1202)
T TIGR01739 1089 GSVLPCWA-QGTHLGLYHP 1106 (1202)
T ss_pred CCEeccce-EeccCCcEEC
Confidence 99999999 7663 44443
No 8
>PHA03366 FGAM-synthase; Provisional
Probab=100.00 E-value=4.7e-74 Score=704.27 Aligned_cols=415 Identities=23% Similarity=0.290 Sum_probs=350.8
Q ss_pred cCCccccccee---------------eEE------------------------EEeeCCccccccccc--cccccCCCCc
Q psy2354 201 LCKPLHCKTLR---------------MIS------------------------AREKCPVQFVGVVTG--SNKVQGDNAA 239 (749)
Q Consensus 201 fg~p~~~g~~r---------------m~~------------------------v~~Gg~~~r~G~gG~--Ss~~~~~~~~ 239 (749)
||.|+|+||+| ||+ |+|| .||+|+||+ ||+ ..++
T Consensus 326 ~G~Pvi~Gf~r~~~~~~~~~~~~~~~m~~~~~~~g~~~~~~~~~~~~~~g~~vv~lG--~y~~~~g~~a~~~~---~~~S 400 (1304)
T PHA03366 326 SGVPVVGGFLRTIPTTLALISPLPNNMLTFTSLLSTISTIALDTARYRPGQYIVALG--SFEPSSGPDTPPYL---YRDS 400 (1304)
T ss_pred cCCCEeccEeEEeccccccccccCCceeeecccccccchhhhccCCCCCCCEEEEEc--CceecCCCCCCCcc---cccC
Confidence 99999999999 666 8888 999999999 776 3446
Q ss_pred cCCCCccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccCCCceEEecccccCCCCcChhhhcc
Q psy2354 240 DLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEPVGAVVFTESFLLGDPSISTLELWG 319 (749)
Q Consensus 240 ~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~~G~~i~l~~v~~~~~~ms~~eI~~ 319 (749)
.+|+++|||+||+|++++. ++|++ + +|||+|+||..|+++||+++.|++|+++++| ||+++++|||.
T Consensus 401 ~~~~navqr~~~~m~~~~~---~~~v~-~-------si~d~g~~~~~~~L~elv~p~G~~i~~~~lp--d~tls~le~~~ 467 (1304)
T PHA03366 401 GLEANKILQALKLFYSLLP---GPCIS-G-------SSRPLGPASVLEHLLALCPPGGLLLFLSALP--EDVVSGLKPFS 467 (1304)
T ss_pred HHHHHHHHHHHHHHHhhcC---CceEE-E-------ecCCCCcchHHHHHHHHhccCceEEEhhhCC--hHHhhhhhccc
Confidence 8999999999999999996 88885 2 9999999999999999999999999999999 99999999999
Q ss_pred ccccccc----------------ccccCcc--------cHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccccCCCC
Q psy2354 320 AEYQENN----------------ALLCKPL--------HCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPS 375 (749)
Q Consensus 320 sEsQEr~----------------~l~v~~~--------~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~~~~~~ 375 (749)
+|||||| .|+|+++ +++.|++||+|||||++|||++|+++++++.++.|
T Consensus 468 ~e~qe~~~~~v~~~flnv~~~~~~l~i~~~~~~~~~~~~l~~l~~ic~rercp~~vvG~~t~~~~~~~~d~~~------- 540 (1304)
T PHA03366 468 ASNRETNEEIVKQYFLNVYCSVVFLVIKNTHEGGEGVTPLDALKRACRLAGCPVHILGRTVPLPGIHFVNDLG------- 540 (1304)
T ss_pred ccchhHHHHHhhhhhcccccceEEEEEcCcccccccccHHHHHHHHHHHcCCCEEEEEEEecCCcEEEEcCCC-------
Confidence 9999999 9999999 99999999999999999999999999999998763
Q ss_pred CCCCcccccchhhhhcC---CC-------cc-------------------------------------------------
Q psy2354 376 SPLQHPVDIQMELICGK---MP-------QK------------------------------------------------- 396 (749)
Q Consensus 376 ~~~~~~vdlp~~~l~~~---~p-------~~------------------------------------------------- 396 (749)
+..|+|+|++.++++ .| +|
T Consensus 541 --~~~p~dl~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~vL~~P~VaSK~~i~~~~Dr~V~ 618 (1304)
T PHA03366 541 --NPVYGELRDDQFKPTFPLQPSRPLSPVSATSEDTRPSPQDESIDWALFNLNSTLLQILSHPTVGSKEYIVRHIDRCGN 618 (1304)
T ss_pred --CCCCcCcchhhhcccCCCCccccccccccccccccccCCCCCcCcccCCHHHHHHHHHcCCcccchhhhheecccccC
Confidence 222333333333111 11 00
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 619 G~ta~qqgVGP~q~PvaD~aVv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~A~siGe~ 698 (1304)
T PHA03366 619 GRVAQQPGVGPLDLPVSDYSIVVHSSVKTRRAIETPSSTEDLTYQEADELINSPLTWFDPDDESVLHPAVPGTCSALGEQ 698 (1304)
T ss_pred CeEEeCCCcCcccCccCCEEEEEEecccccccccccccccccccchhhhhhccccccccccccccccCCCCEEEEecCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 699 p~~~~lDP~~Ga~~AVaEAl~NL~aa~~~~L~~i~lslNf~wP~~p~~~a~L~eav~ai~e~C~~LgIpIv~G~~S~yne 778 (1304)
T PHA03366 699 GYKVQLDPILGAKYAIVEALTNLMLAPVANLEDITITLSVTWPPTDQAASELYRALAACKEFCRELGVNFTFTSASSSPR 778 (1304)
T ss_pred ceEEEcCHHHHHHHHHHHHHHHHhhcCCccchheEEEEEecCCCCcchHHHHHHHHHHHHHHHHHcCCCEeeeecccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 779 ~~~~~~~i~~pptIvisg~~~~~dv~k~vTp~lk~~G~~L~lIg~~~~~~LgGS~laq~~~~~g~~~P~vd~~~lk~~f~ 858 (1304)
T PHA03366 779 QDQPPQPGPLFNTIVFTASAPVPSSTPRLTPDLKKPGSALVHLSISPEYTLAGSVFEQIFGLKSGTLPDISPSYLKNLFR 858 (1304)
T ss_pred cCCCCccccCCCeEEEEEEEEccCcccccCcccCCCCCEEEEEeCCCCCCcchhHHHHhhccccCCCCCCCHHHHHHHHH
Confidence
Q ss_pred ----------------------------ccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHHHHHHc
Q psy2354 397 ----------------------------MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAA 448 (749)
Q Consensus 397 ----------------------------MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~ 448 (749)
|||||++|++|+++. ..+|++.||||++|+|+||+++++++|+++|+++
T Consensus 859 ~v~~Li~~glI~A~HDVSdGGL~~ALaEMAfag~~G~~Idl~~---~~d~~~~LFsE~~G~VveV~~~~~~~v~~~l~~~ 935 (1304)
T PHA03366 859 AVQHLISEGLVVSGHDVSDGGLIACLAEMALAGGRGVTITVPA---GEDPLQFLFSETPGVVIEVPPSHLSAVLTRLRSR 935 (1304)
T ss_pred HHHHHHHcCCeEEEEECCcCHHHHHHHHHHHhCCCcEEEEeCC---CCCHHHHHhCCCCeEEEEEchhHHHHHHHHHHHC
Confidence 999999999999974 3578999999999999999999999999999999
Q ss_pred CCCeeEeeEeecCCCC-cEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcc---c-CCCCcc--
Q psy2354 449 NVSCKKIGVCDAFGMN-AKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVT---R-IGPKYQ-- 521 (749)
Q Consensus 449 gv~~~~IG~vt~~~~~-~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~---~-~~p~~~-- 521 (749)
|+++++||++++ +.. +.++|+++|+.+++.++++|++.|++|||++++++.++.| ++|++.+.. . ..|.++
T Consensus 936 gi~~~vIG~vt~-~~~~~~l~I~~~~~~l~~~~l~eL~~~W~~ts~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~ 1013 (1304)
T PHA03366 936 NIICYPIGTVGP-SGPSNTFSVSHNGTVLFRESLSSLRSTWRSFSDEQFELLRPDLT-EESMYRKDYGNNEVDLGPLEEG 1013 (1304)
T ss_pred CCCeEEEEEEcC-CCceEEEEEEECCEEEEecCHHHHHHHHHHHHHHHHHHhcCChh-hhHHHHhhcccccccccCcccc
Confidence 999999999987 511 2399999999999999999999999999999977666666 566544421 1 124332
Q ss_pred --cC----------CCcc-------------------------------ccc--cccCC------------CcccccchH
Q psy2354 522 --YQ----------PVRD-------------------------------DIV--GATLG------------KKDALGSAK 544 (749)
Q Consensus 522 --f~----------pPkV-------------------------------Dl~--~~sLd------------ygDvlgsgk 544 (749)
|+ +||| ||+ +. |+ |||++|+|+
T Consensus 1014 ~~~~~~~~~~~~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS~gD~l~~~~ 1092 (1304)
T PHA03366 1014 LTTSPLRLYTCPDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSGAEDSYTGAR 1092 (1304)
T ss_pred ccCCchhcccCCCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCCCcccccHHH
Confidence 22 2565 444 22 53 999999999
Q ss_pred HHHHhhccChhHHHHHHHHHhCCCCeeEeeec-hhhhhhccCccccCcCC------cCccc-ccccccccCCCcceeeeE
Q psy2354 545 GWAASLLLNEGIKTQLNKFIARSDTFSFGVCN-GCQLMNLLGWFSVSTQD------KNNLV-TDVMLSHNNSERFECRYS 616 (749)
Q Consensus 545 gwa~siL~n~~~~~~f~~f~~r~dtf~LGICn-GcQ~L~~~~lIp~~~g~------~~~~~-p~~~~~~N~s~rfEsr~~ 616 (749)
|||++||+|+.++++|.+||+|+|||+||||| |||+|+++||||...+. ..++| | +|++|+|+||||||+
T Consensus 1093 ~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~g~i~~~~~~--~l~~N~s~rfesr~~ 1170 (1304)
T PHA03366 1093 AAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPGTETEEQWPI--TLEPNASGLYESRWL 1170 (1304)
T ss_pred HHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCccCCccccccccccccCCCC--eEeeeCCCCeEeece
Confidence 99999999999999999999999999999999 99999999999532221 01346 6 999999999999999
Q ss_pred EEEecC-CCcccccCCCCceeeEEeecccceeeEe
Q psy2354 617 TVKIMK-SPAIMLRNLENSVLGVWVAHGEVMLRGA 650 (749)
Q Consensus 617 ~V~I~~-s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~ 650 (749)
+|+|++ |+||||++|+|++||||++|+++++.+.
T Consensus 1171 ~v~i~~~s~Si~l~~~~Gs~lP~w~~g~~~~~~~~ 1205 (1304)
T PHA03366 1171 NFYIPETTKSVALRPLRGSVLPCWAQGTHLGFRYP 1205 (1304)
T ss_pred EEEeCCCCCCccccccCCCCCCEEeCCCccccccC
Confidence 999998 9999999999999999977776676654
No 9
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=2.9e-50 Score=461.26 Aligned_cols=306 Identities=18% Similarity=0.169 Sum_probs=243.4
Q ss_pred EEeeCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCccccccccccc
Q psy2354 215 AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEI 292 (749)
Q Consensus 215 v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El 292 (749)
+++|++|||||+||+ +|....+ ......+||+|||++||++ +++|++.. +.++|.++||+|+||+++++.||
T Consensus 174 vl~G~~tGrdGi~Gas~as~~l~~--~~~~~~~vq~gd~~~ek~l---~e~~l~~~-~~glI~a~~DigaGGLa~AL~Em 247 (601)
T PRK14090 174 VIFGGATGRDGIHGASFASEDLTG--EKATKLSIQVGDPFAEKML---IEAFLEMV-EEGLVEGAQDLGAGGVLSATSEL 247 (601)
T ss_pred EEEcCCCCCCCcchHHHHHHHhcC--CcccccccccCCHHHHHHH---HHHHHhHH-hcCCeEEeeCCCCCcHHHHHHHH
Confidence 688999999999998 3333322 1235568999999999998 77777776 88899999999999999999999
Q ss_pred ccC--CCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccc
Q psy2354 293 VEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKY 370 (749)
Q Consensus 293 ~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~ 370 (749)
+.. +|++|++++||+++++|+|+|||+|||||||+++|+|++.+.|.++|+++++++++||++|+++++++.+
T Consensus 248 A~~sg~G~~IdLdkVPl~~~~m~p~eil~SESqeRmlv~V~~e~~~~~~~i~~~~~l~a~vIG~Vt~~~~l~~~~----- 322 (601)
T PRK14090 248 VAKGGLGAIVHLDRVPLREPDMEPWEILISESQERMAVVTSPEKASRILEIAKKHLLFGDIVAEVIDDPIYRVMY----- 322 (601)
T ss_pred HHHhCCeEEEEecccccCcccCCHHHHHhcCCCCeEEEEECHHHHHHHHHHHHhCCCCEEEEEEEeCCceEEEEE-----
Confidence 974 7999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCcccccchhhhhcCCCccccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHHHHHHcCC
Q psy2354 371 YSNPSSPLQHPVDIQMELICGKMPQKMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANV 450 (749)
Q Consensus 371 ~~~~~~~~~~~vdlp~~~l~~~~p~~MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~gv 450 (749)
.++.++|+|+++|.. .|+. . + -++ . +.+.
T Consensus 323 ------~g~~v~dlp~~~L~~-~p~~-------------~-~----~~~------------~--~~~~------------ 351 (601)
T PRK14090 323 ------RDDLVMEVPVQLLAN-APEE-------------E-I----VEY------------T--PGEI------------ 351 (601)
T ss_pred ------CCeEEEEccHHHHhc-CCcc-------------c-c----ccc------------C--cccc------------
Confidence 789999999998765 3431 0 0 000 0 0000
Q ss_pred CeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcccCCCccccc
Q psy2354 451 SCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQPVRDDIV 530 (749)
Q Consensus 451 ~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~f~pPkVDl~ 530 (749)
.. . . + ..|.+
T Consensus 352 --------~~-~--~------------~---~~l~~-------------------------------------------- 361 (601)
T PRK14090 352 --------PE-F--K------------R---VEFEE-------------------------------------------- 361 (601)
T ss_pred --------cc-c--c------------h---HHHHH--------------------------------------------
Confidence 00 0 0 0 00000
Q ss_pred cccCCCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCc
Q psy2354 531 GATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSER 610 (749)
Q Consensus 531 ~~sLdygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~r 610 (749)
| .+.||+ +|
T Consensus 362 --------------------------------------------~-------s~~~i~--------------------~q 370 (601)
T PRK14090 362 --------------------------------------------V-------NAREVF--------------------EQ 370 (601)
T ss_pred --------------------------------------------h-------hHHHHH--------------------Hh
Confidence 0 123444 13
Q ss_pred ceeeeEEEEecCCCcccccCCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccc
Q psy2354 611 FECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKD 690 (749)
Q Consensus 611 fEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~ 690 (749)
|++ +| ++.+|+.+|..++++.+ +|. .+.+++.++||+|+++|||+||++||+||+||++|+|+.|++
T Consensus 371 yD~---~V---~~~tv~~P~~~a~v~~~---~~~---~~~a~~~~~np~~~~~~p~~g~~~av~ea~rn~~~~Ga~p~~- 437 (601)
T PRK14090 371 YDH---MV---GTDTVLPPGFGAAVMRI---KRD---GGYSLVTHSRADLALQDTYWGTFIAVLESVRKTLSVGAEPLA- 437 (601)
T ss_pred ccc---cc---CCCccccCCCCcEEEEE---cCC---CeEEEEcCCCCceeccCHHHHHHHHHHHHHhhHhhhCCcHHH-
Confidence 443 23 46677777766778776 441 278999999999999999999999999999999999987666
Q ss_pred cccccccccccCCCCCh-HHHHHHHHHHHHHHHHcCccccccccCccceEe
Q psy2354 691 VKCSGNWMWAAKLPGEG-AALFDACQAMCDIMGEFGIAVDGGKDSLSMAAR 740 (749)
Q Consensus 691 v~~~~Nf~~~~~~P~~~-~~l~~a~~gl~d~~~~lg~PvvgGkdSls~~~~ 740 (749)
+++|+|| +||++| .+|+++++||+|+|++|++|+||||||||+++.
T Consensus 438 i~~~~nf----~~p~~~~~~~~~~~~~~~~a~~~~~~p~i~G~~S~~n~~~ 484 (601)
T PRK14090 438 ITNCVNY----GDPDVDPVGLSAMMTALKDACEFSGVPVASGNASLYNTYQ 484 (601)
T ss_pred ceechhc----CCCCCCHHHHHHHHHHHHHHHHHhCCCeecceeccccCCC
Confidence 8889999 556554 469999999999999999999999999999974
No 10
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=1.1e-45 Score=438.89 Aligned_cols=365 Identities=21% Similarity=0.255 Sum_probs=280.9
Q ss_pred eEEeeeeeecCCCCCCcccccccCcc-cccc----cCCccccccee---------eEE----------------------
Q psy2354 171 VVFTESFLLGDPSISTLELWGAEYQE-NNAL----LCKPLHCKTLR---------MIS---------------------- 214 (749)
Q Consensus 171 ~~~~~~~~~~~l~~p~~~~w~~~~p~-~~a~----fg~p~~~g~~r---------m~~---------------------- 214 (749)
+.+..+|+|++++.|. ..|-+...- -++. ||.|++.|.+. ++.
T Consensus 121 ~a~~~~l~~~~~~~~~-~~~~l~~~~~Gi~~~~n~~Gvp~vgG~t~~~~~~~~~p~v~~~~iG~~~~~~~~r~~~~~~Gd 199 (724)
T PRK01213 121 IALLDSLRFGELDHPK-TRYLLEGVVAGIGGYGNCIGVPTVGGEVYFDESYNGNPLVNAMCVGLVRHDDIVLAKASGVGN 199 (724)
T ss_pred eeeeeEEEccCCCCCc-HHHHHHHHHHHHHHHHHhcCCCEeeEEEEEeCCcCCCceEEEEEEEEEcHHHcccCCCCCCCC
Confidence 7788899999875432 122111111 1222 89999999985 111
Q ss_pred --EEeeCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCccccccccc
Q psy2354 215 --AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLK 290 (749)
Q Consensus 215 --v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~ 290 (749)
|++|++|||+|+||+ +|....+. ...++++||+|||+|||++ +++|+++. +.++|.+|||+|+||+++++.
T Consensus 200 ~Ii~~G~~tg~~Gigg~~~~s~~~~~~-~~~~~~~vq~g~~~~~~~l---~~~~~~~~-~~~~v~a~~D~g~gGL~~al~ 274 (724)
T PRK01213 200 PVVYVGAKTGRDGIGGASFASAELSEE-SEEKRPAVQVGDPFMEKLL---IEACLELI-KTGLVVGIQDMGAAGLTCSSS 274 (724)
T ss_pred EEEEeCCCcCcccCcHHHHHHhhhhcc-ccccCcccccCCcHHHHHH---HHHHHHHh-ccCCEEEEEECCCCcHHHhHH
Confidence 888999999999998 44433332 3578999999999999998 89999988 889999999999999999999
Q ss_pred ccccC--CCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccc
Q psy2354 291 EIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKA 368 (749)
Q Consensus 291 El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f 368 (749)
||++. +|++|+++++|+++++|+|+|||++||||||+++|+|++.+.|.++|+++++++++||++|+++++++.+
T Consensus 275 Ema~~s~~G~~I~ld~iP~~~~~~~p~ei~~sesqerml~~v~~~~~~~~~~~~~~~~~~~~vIG~vt~~~~~~~~~--- 351 (724)
T PRK01213 275 EMAAKGGLGIELDLDKVPLREEGMTPYEIMLSESQERMLLVVKPGKEEEVLAIFEKWDLDAAVIGEVTDDGRLRVYH--- 351 (724)
T ss_pred HHhccCCcEEEEEcccccccCCCCCHHHHHhccccceEEEEECHHHHHHHHHHHHHcCCCEEEEEEEecCCeEEEEE---
Confidence 99985 7999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCCCCCcccccchhhhhcCCCccccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHHHHHHc
Q psy2354 369 KYYSNPSSPLQHPVDIQMELICGKMPQKMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAA 448 (749)
Q Consensus 369 ~~~~~~~~~~~~~vdlp~~~l~~~~p~~MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~ 448 (749)
.++.++|+|+++|++++|++- .+.. ++.....
T Consensus 352 --------~g~~v~d~~~~~l~~~~p~~~-----------~~~~---------------------~~~~~~~-------- 383 (724)
T PRK01213 352 --------HGEVVADVPAEALADEAPVYD-----------RPYK---------------------EPAYLDE-------- 383 (724)
T ss_pred --------CCeEEEEeEHHHhcCCCCcee-----------cccc---------------------Ccccccc--------
Confidence 788999999999998888620 0000 0000000
Q ss_pred CCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcccCCCccc
Q psy2354 449 NVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQPVRDD 528 (749)
Q Consensus 449 gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~f~pPkVD 528 (749)
... .
T Consensus 384 ---------~~~-~------------------------------------------------------------------ 387 (724)
T PRK01213 384 ---------LQA-D------------------------------------------------------------------ 387 (724)
T ss_pred ---------ccc-C------------------------------------------------------------------
Confidence 000 0
Q ss_pred cccccCCCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCC
Q psy2354 529 IVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNS 608 (749)
Q Consensus 529 l~~~sLdygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s 608 (749)
+.++.+.+.+.+++++ || .+.||.
T Consensus 388 ------------------------~~~l~~~~~~~l~~~~-----v~-------sk~~i~-------------------- 411 (724)
T PRK01213 388 ------------------------PEDLKEALLKLLSSPN-----IA-------SKEWVY-------------------- 411 (724)
T ss_pred ------------------------CcCHHHHHHHHhcCCc-----cc-------chhhhh--------------------
Confidence 0012344455555555 54 466776
Q ss_pred CcceeeeEEEEecCCCcccccCCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCc
Q psy2354 609 ERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDL 688 (749)
Q Consensus 609 ~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l 688 (749)
+||++ +| +..++.-+|-+.+++++. + ...+.++|+|.+|+++.+|||+||+.||+|++|||+|+|+.|+
T Consensus 412 ~~yD~---~V---~~~tv~~pGdDaAVi~~~---~--~~~~l~~s~D~~~~~~~~~P~~~g~~AV~~avsdiaa~Ga~P~ 480 (724)
T PRK01213 412 EQYDH---EV---QTNTVVKPGGDAAVLRIR---G--GGKGLALTTDCNPRYVYLDPYEGAKLAVAEAARNLAAVGATPL 480 (724)
T ss_pred hccCc---ee---cCCccccCCCCeEEEEec---C--CCEEEEEEecCCCCccccCHHHHHHHHHHHHHHHHhccCCeeh
Confidence 23444 23 334555567677777653 1 1247889999999999999999999999999999999999887
Q ss_pred cccccccccccccCCCCCh---HHHHHHHHHHHHHHHHcCccccccccCccceEe
Q psy2354 689 KDVKCSGNWMWAAKLPGEG---AALFDACQAMCDIMGEFGIAVDGGKDSLSMAAR 740 (749)
Q Consensus 689 ~~v~~~~Nf~~~~~~P~~~---~~l~~a~~gl~d~~~~lg~PvvgGkdSls~~~~ 740 (749)
. +.+++|| ++|+++ ++|.++++||.|+|++||+|+||||+|||+++.
T Consensus 481 ~-~~~~l~~----~~p~~~~~~~~l~~~~~Gi~~a~~~~gvpivGG~~s~~n~~~ 530 (724)
T PRK01213 481 A-ITDCLNF----GNPEKPEVMWQFVEAVRGLADACRALGTPVVGGNVSLYNETG 530 (724)
T ss_pred h-heeeeec----CCCCchHHHHHHHHHHHHHHHHHHHhCCCcccceeeeeCCCC
Confidence 7 5556666 455555 457789999999999999999999999998763
No 11
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=100.00 E-value=1.1e-41 Score=415.66 Aligned_cols=368 Identities=30% Similarity=0.386 Sum_probs=275.8
Q ss_pred cCcccccccccccccCCCceEE-ecccc-cC------CCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEE
Q psy2354 280 QGAGGNGNVLKEIVEPVGAVVF-TESFL-LG------DPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQF 351 (749)
Q Consensus 280 ~GaGG~~na~~El~~~~G~~i~-l~~v~-~~------~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~v 351 (749)
-|++.|||.+| ++.++|.+. ++..+ .+ +|.|.+..|+... ++ ...++. .+.+-.+.+
T Consensus 371 ~G~s~YGN~~G--~P~v~G~~~~F~~~~~~g~~~~~~kPim~ag~vG~~~----------~~--~v~k~~-~~~G~~vv~ 435 (1307)
T PLN03206 371 NGASDYGNKFG--EPLIQGYTRTFGMRLPNGERREWLKPIMFSGGIGQID----------HT--HLTKGE-PDIGMLVVK 435 (1307)
T ss_pred CccccCCcccC--CcccCcEEEEeccccccccccccCCCceEEEEEEEEc----------HH--HcccCC-CCCCCEEEE
Confidence 47999999999 888899985 77776 56 8998888888663 22 223322 668889999
Q ss_pred EEEEeCCCCE---EEEeccccccC-CCCCCCCcccccchhhhh----c-------CCC-----cc-----------cccc
Q psy2354 352 VGVVTGSNKI---VLAEDKAKYYS-NPSSPLQHPVDIQMELIC----G-------KMP-----QK-----------MAFA 400 (749)
Q Consensus 352 VG~~T~~~~l---~~~~~~f~~~~-~~~~~~~~~vdlp~~~l~----~-------~~p-----~~-----------MAfa 400 (749)
+|--|++++| ++++..+.+.+ ..+....+..|.+|+..+ . +-| ++ ||-.
T Consensus 436 lGG~tgRdGigGat~SS~~~~~~s~~~d~~aVQ~GnP~~Ekklq~vi~ac~e~~~~~~I~~i~D~GAGGls~a~~Ela~~ 515 (1307)
T PLN03206 436 IGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMSQKLYRVVRACVEMGEDNPIVSIHDQGAGGNCNVVKEIIYP 515 (1307)
T ss_pred ECCCcccccccchhhhhhhhCCccccccCCccccCCHHHHHHHHHHHHHHHHhhcCCCEEEEEecCCchHHHhHHHHhhc
Confidence 9999999999 66665543222 222245677888887654 1 112 22 7654
Q ss_pred CCccEEEEcCC---CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEECC---
Q psy2354 401 GLSGMTVDIPS---DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNN--- 473 (749)
Q Consensus 401 g~~G~~I~L~~---~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~g--- 473 (749)
+|++|+|++ +++||+|+|+|+|||| ||++.|+++++++|+++|+++++++++||++|+ + +++++++++
T Consensus 516 --~G~~i~Ld~Vp~~e~gmsp~EI~~SESQERm~l~V~p~~~~~f~~i~~re~~~~~vVG~vT~-~--~rl~v~~~~~~~ 590 (1307)
T PLN03206 516 --KGAEIDIRAVVVGDHTLSVLEIWGAEYQEQDALLIKPESRDLLQSICDRERCSMAVIGTIDG-S--GRVVLVDSAAPE 590 (1307)
T ss_pred --CceEEEhhhCcCCCCCCCHHHHHHhHHhhhheeeECcccHHHHHHHHHHcCCCeEEEEEEec-C--CeEEEEECCccc
Confidence 899999986 7889999999999999 999999999999999999999999999999999 7 899999997
Q ss_pred ----------EEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcc--cCCCccccccccCCCccccc
Q psy2354 474 ----------EPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ--YQPVRDDIVGATLGKKDALG 541 (749)
Q Consensus 474 ----------~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~--f~pPkVDl~~~sLdygDvlg 541 (749)
+.++++|++.|.. +.|.+. +..|+..+ ..+ +
T Consensus 591 ~~~~~g~~~~~~~~dlp~~~l~~-----------------------------~~P~~~~~~~~~~~~~--~~~---~--- 633 (1307)
T PLN03206 591 KCEANGLPPPPPAVDLDLEKVLG-----------------------------DMPQKTFEFKRVANKL--EPL---D--- 633 (1307)
T ss_pred cccccccccCceeEEEEhHHhcC-----------------------------CCCccccccccccccc--ccc---c---
Confidence 7899999998865 234443 11111000 000 0
Q ss_pred chHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEec
Q psy2354 542 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIM 621 (749)
Q Consensus 542 sgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~ 621 (749)
+-....+++.+.+.+.+++ || .+.||.. ||++- ++-.+.
T Consensus 634 --------~~~~~~~~~~l~~vL~~pn-----Va-------SK~~l~~--------------------~~D~~-V~g~vv 672 (1307)
T PLN03206 634 --------IPPGITVMDALKRVLRLPS-----VC-------SKRFLTT--------------------KVDRC-VTGLVA 672 (1307)
T ss_pred --------cCCCcCHHHHHHHHhcCCc-----cc-------cccchhh--------------------hcccc-cCceEc
Confidence 0011257888888998888 66 4667762 12110 000011
Q ss_pred CCCcc---cccCCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccc
Q psy2354 622 KSPAI---MLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWM 698 (749)
Q Consensus 622 ~s~Sv---~l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~ 698 (749)
..+.+ ..++.+ .+|...++. ..++.++|+|+||+++++|||+||++||+||+|||+|++...+.++.+++|||
T Consensus 673 ~~~~vGp~q~p~aD---~aV~~~~~~-~~~g~a~s~G~~p~~~~~dp~~ga~~AV~Ea~~Nlvaa~~~~l~di~~s~nw~ 748 (1307)
T PLN03206 673 QQQTVGPLQIPLAD---VAVIAQTHT-GLTGGACAIGEQPIKGLVDPKAMARLAVGEALTNLVWAKVTALSDVKASGNWM 748 (1307)
T ss_pred ccCccCCccCCCcc---eeEEEEeCC-CCeEEEEEecCCCceeeeCHHHHHHHHHHHHHhHhhccCCCcHHHeEEEcChh
Confidence 11111 122223 333322222 25789999999999999999999999999999999999877899999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHcCccccccccCccceEecCCceeeCC
Q psy2354 699 WAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSMAARVGKETVKAP 749 (749)
Q Consensus 699 ~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~~~~~~~~~v~~p 749 (749)
|..++|+++++|++||+||+|+|++|||||+||||||||+++|+++.|++|
T Consensus 749 ~~~~~p~~~~~l~~av~g~~~~~~~Lgipii~GKdSls~~~~~~~~~~~~P 799 (1307)
T PLN03206 749 YAAKLDGEGADMYDAAVALRDAMIELGVAIDGGKDSLSMAAQAGGEVVKAP 799 (1307)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHcCCCcccCeecCCCCCCCCCCCcCCC
Confidence 999999999999999999999999999999999999999999988888887
No 12
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=100.00 E-value=3.9e-40 Score=404.90 Aligned_cols=367 Identities=24% Similarity=0.269 Sum_probs=267.2
Q ss_pred CcccccccccccccCCCceE-Eeccccc---------CCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeE
Q psy2354 281 GAGGNGNVLKEIVEPVGAVV-FTESFLL---------GDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQ 350 (749)
Q Consensus 281 GaGG~~na~~El~~~~G~~i-~l~~v~~---------~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~ 350 (749)
|++.++|+++ ++.+||.+ .++.... ..|.|...-++.-+ .+ .+..-..+.+-.+.
T Consensus 374 G~~~~gn~~G--~P~v~G~vs~f~~~~~~~~g~~~~~~~P~~~~g~vG~i~-----------~~--~~~~~~~~~G~~iv 438 (1310)
T TIGR01735 374 GAAAFNNEFG--RPNLLGYFRTFELKASLPGGQVRGYHKPIMLAGGIGSID-----------AE--HIQKGEIEPGALLI 438 (1310)
T ss_pred HHHHHhhhhC--CcccceeeeeccccccccccccccccCCccEEEEEEEec-----------hh--hcccCCCCCCCEEE
Confidence 6889999999 88889988 6666442 58888887666554 21 12222256788999
Q ss_pred EEEEEeCCCCE---E---EEeccccccCCCCCCCCcccccchhhhhc-------CC----Ccc----------------c
Q psy2354 351 FVGVVTGSNKI---V---LAEDKAKYYSNPSSPLQHPVDIQMELICG-------KM----PQK----------------M 397 (749)
Q Consensus 351 vVG~~T~~~~l---~---~~~~~f~~~~~~~~~~~~~vdlp~~~l~~-------~~----p~~----------------M 397 (749)
+||..|++++| + +.+..+.+ .......+.+|+.++..+. .. |-. |
T Consensus 439 llGg~~~rdglgGs~~ss~~~g~~~~--~~~~~~Vq~gdp~~ek~~~~~i~~~~~~~~~~~i~sihD~gaGGls~al~Em 516 (1310)
T TIGR01735 439 VLGGPAMLIGLGGGAASSMVSGTNTA--DLDFASVQRGNPEMERRCQEVIDRCWQLGEKNPIISIHDVGAGGLSNALPEL 516 (1310)
T ss_pred EECCCCCCCCccHHHHHHHHhCCCcc--cccCCCCCCCCHHHHHHHHHHHHHHHHcCCCCceEEEeccCccHHHHHHHHH
Confidence 99999988888 2 22211110 0111245567887776521 01 211 9
Q ss_pred cccCCccEEEEcCC---CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEEC-
Q psy2354 398 AFAGLSGMTVDIPS---DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVN- 472 (749)
Q Consensus 398 Afag~~G~~I~L~~---~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~- 472 (749)
|+++++|++|+|++ ++++|+|+|+|||||| |||+.|+++++++|+++|+++++++++||++|+ + ++++|+++
T Consensus 517 a~~~g~G~~i~L~~vp~~~~~m~~~eil~sESQeR~vl~v~~~~~~~f~~i~~~~~~~~~vIG~vt~-~--~~l~v~~~~ 593 (1310)
T TIGR01735 517 IHDGGRGAVIDLRAVPLDDPGLSPLEIWCNESQERYVLLVRAENLEIFTAICERERCPFAVVGTATG-D--GRLTLVDDT 593 (1310)
T ss_pred HhcCCceEEEEcCCCcccCCCCCHHHHhhccccccEEEEECcccHHHHHHHHHHcCCCEEEEEEECC-C--ceEEEEecC
Confidence 99999999999986 6788999999999999 899999999999999999999999999999998 7 89999994
Q ss_pred --------------CEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcc--cCCCccccccccCCC
Q psy2354 473 --------------NEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ--YQPVRDDIVGATLGK 536 (749)
Q Consensus 473 --------------g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~--f~pPkVDl~~~sLdy 536 (749)
|++++++|++.|.. +.|.++ ...|+. .. ..+
T Consensus 594 ~~~~~~~~~~~~~~~~~~vdl~~~~L~~-----------------------------~~P~~~~~~~~~~~-~~-~~~-- 640 (1310)
T TIGR01735 594 PVRRNGQGDAPSHFPNNPVDLPLEVLLG-----------------------------KMPKMTRFVQRKAP-ML-QPL-- 640 (1310)
T ss_pred cccccccccccccCCCeEEEeEHHHHcC-----------------------------CCCccccccccccc-cc-ccc--
Confidence 78999999999976 344443 111110 00 000
Q ss_pred cccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCccee--e
Q psy2354 537 KDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFEC--R 614 (749)
Q Consensus 537 gDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEs--r 614 (749)
+.+ ....+++.+.+.+.+++ || .+.||.. ||++ .
T Consensus 641 -~~~-----------~~~~~~~~l~~vL~~pn-----Va-------SK~~l~~--------------------~~D~~V~ 676 (1310)
T TIGR01735 641 -DIP-----------PGLDLHEALERVLRLPA-----VA-------SKRFLIT--------------------IGDRSVG 676 (1310)
T ss_pred -ccC-----------CCcCHHHHHHHHhcCCc-----cc-------cccchhh--------------------hcccccC
Confidence 000 11257888889999888 66 5677762 1111 0
Q ss_pred eEEEEecCCCcc-cccCCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCcccccc
Q psy2354 615 YSTVKIMKSPAI-MLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKC 693 (749)
Q Consensus 615 ~~~V~I~~s~Sv-~l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~ 693 (749)
-.+|+- +--.+ -+++.+.+++.+ +.+..++.++++|+||+++++|||+||++||+||+|||+|+|+.+++++++
T Consensus 677 g~tv~~-~~vGp~q~p~aDaaV~~~----~~~~~~G~ama~G~~P~~~~idP~~gA~~AV~EAl~NlaaaG~~~l~~i~~ 751 (1310)
T TIGR01735 677 GLVARD-QMVGPWQTPLADVAVTAA----SFDTYTGEAMAIGERPPKALLDPKASARLAVGEAITNLAAALVGDLSDVKL 751 (1310)
T ss_pred CcEeec-cCcCCCCCCCcCeEEEEe----cCCCceEEEEEEcCCCCeeccCHHHHHHHHHHHHHhheeecCCcCHHHccc
Confidence 001100 00000 011233444332 223467999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCccceEecCC----ceeeCC
Q psy2354 694 SGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSMAARVGK----ETVKAP 749 (749)
Q Consensus 694 ~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~~~~~~~----~~v~~p 749 (749)
++||||.+++|+++++||++++||.|+|++||+|||||||||||+.+|++ +.|++|
T Consensus 752 s~Nwm~~~~~pge~~~l~~av~al~eac~~LGipiigGKdSls~~~~~~~~G~~~~v~~P 811 (1310)
T TIGR01735 752 SANWMAAAGHPGEDAALYDAVKAVSELCPALGIAIPVGKDSLSMKTRWQDNGETKSVTAP 811 (1310)
T ss_pred cccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999874 346655
No 13
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=100.00 E-value=1.5e-38 Score=385.57 Aligned_cols=354 Identities=18% Similarity=0.139 Sum_probs=257.6
Q ss_pred cCcccccccccccccCCCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCC
Q psy2354 280 QGAGGNGNVLKEIVEPVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSN 359 (749)
Q Consensus 280 ~GaGG~~na~~El~~~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~ 359 (749)
-|+++|||.+| +++.+++.+++.-|.++|......|+.. |.+ ...++. .+.+-.+.+||-.||++
T Consensus 386 ~G~s~YGN~~G--vpTg~g~~~f~~~Y~~~~lv~~~~vG~~-----------~~~-~v~k~~-~~~Gd~iv~~Gg~tGRd 450 (1239)
T TIGR01857 386 HGYSSYGNQIG--LATGQVSEIYHPGYVAKRMEVGAVVAAT-----------PKE-NVVREK-PEPGDVIILLGGKTGRD 450 (1239)
T ss_pred cceeccCcccC--CceeeEEEEEecCCCCCceEEEEEEEee-----------cHH-HhccCC-CCCCCEEEEECCCCCcC
Confidence 47999999999 8889999999999999987777766654 322 223333 66788999999999999
Q ss_pred CE---EEEeccccccC-CCCCCCCcccccchhhhhcCCC-------------cc-----------ccccCCccEEEEcCC
Q psy2354 360 KI---VLAEDKAKYYS-NPSSPLQHPVDIQMELICGKMP-------------QK-----------MAFAGLSGMTVDIPS 411 (749)
Q Consensus 360 ~l---~~~~~~f~~~~-~~~~~~~~~vdlp~~~l~~~~p-------------~~-----------MAfag~~G~~I~L~~ 411 (749)
+| ++++.++.+.+ .......+..|.+++..+.+.= ++ ||+ |++|+|++
T Consensus 451 GigGat~SS~~~~~~s~~~~~~aVQ~Gdp~~Ekkl~e~i~~a~~~glI~s~hD~gaGGLavAlaEma~----G~~IdL~~ 526 (1239)
T TIGR01857 451 GIGGATGSSKEHTVESLELCGAEVQKGNAPEERKIQRLFRNGNVTRLIKKCNDFGAGGVSVAIGELAD----GLEIDLNK 526 (1239)
T ss_pred cccchhhhhhhccccccccccCccCcCCHHHHHHHHHHHHHHHhCCCEEEEeecchhHHHHHHHHHhC----CEEEEcCC
Confidence 98 56555443333 2222355667777665442111 11 876 99999985
Q ss_pred ---CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHH
Q psy2354 412 ---DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLI 487 (749)
Q Consensus 412 ---~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~ 487 (749)
++++|+|+|+|||||| ||+++|+++++++|+++|+++++++.+||+||+ + ++++|+++|++|+++|+++|..
T Consensus 527 vp~~~~gl~p~EiLfSESQeRmlv~V~pe~~e~f~~i~~~~~l~~~vIG~vt~-~--~~l~v~~~g~~v~dL~~~fL~~- 602 (1239)
T TIGR01857 527 VPKKYEGLNGTELAISESQERMAVVVSPEDVDAFLAYCNEENLEATVVATVTE-K--PRLVMNWNGKTIVDLSRRFLDT- 602 (1239)
T ss_pred CccccCCCCHHHHhhCCcCCeEEEEEChhhHHHHHHHHHHCCCCEEEEEEECC-C--CeEEEEeCCceEEEeeHHHHcC-
Confidence 5678999999999999 899999999999999999999999999999998 6 8999999999999999999975
Q ss_pred hhhhhHHHHHhhcccchhhHhhhhhcccCCCCcc--cCCCccccccccCCCcccccchHHHHHhhccChhHHHHHHHHHh
Q psy2354 488 WERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ--YQPVRDDIVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIA 565 (749)
Q Consensus 488 W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~--f~pPkVDl~~~sLdygDvlgsgkgwa~siL~n~~~~~~f~~f~~ 565 (749)
..|.+. ...|+. ..+... + ... .....+++.+.+.+.
T Consensus 603 ----------------------------~gp~~~~~~~~~~~-~~~~~~-~-~~~----------~~~~~~~~~l~~vL~ 641 (1239)
T TIGR01857 603 ----------------------------NGVRQVIDAKVVDK-DVKLPE-E-RQK----------TSAETLEEDWLKVLS 641 (1239)
T ss_pred ----------------------------CCCCCeeecccccc-cccccc-c-cCC----------CCCcCHHHHHHHHhc
Confidence 133332 110100 000000 0 000 011257788889999
Q ss_pred CCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCccccc-C-------CCCceee
Q psy2354 566 RSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLR-N-------LENSVLG 637 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~-g-------m~Gsvlp 637 (749)
+++ || ++.||.. ||++ +| +..++..+ | .+++++.
T Consensus 642 ~pn-----Va-------SK~~l~~--------------------qyD~---~V---~g~TV~~P~gG~~q~~~~DaaV~~ 683 (1239)
T TIGR01857 642 DLN-----VA-------SQKGLQE--------------------RFDS---SV---GAGTVLMPLGGKYQLTPTEASVAK 683 (1239)
T ss_pred CCc-----cc-------chhhhhh--------------------hcCc---cc---CCCeeeCCCCCCcCCCCcceEEEE
Confidence 888 77 4667762 2333 12 22333332 2 3567777
Q ss_pred EEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCcccccccccccccc-CCCCChHHHH---HH
Q psy2354 638 VWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAA-KLPGEGAALF---DA 713 (749)
Q Consensus 638 i~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~-~~P~~~~~l~---~a 713 (749)
+.+-+|+ +.++.++|+|+||+|+++|||+||++||+||+||++|+|+. +.++ ++||.-+| +.|++|+.+| +|
T Consensus 684 ~~~~~g~-t~~g~ams~g~nP~~~~~dPy~ga~~AV~EA~rNlva~G~~-~~~i--~Lnf~~~F~k~p~~p~~w~~~~~a 759 (1239)
T TIGR01857 684 LPVLGGE-THTASAIAWGFNPYIAEWSPYHGAAYAVIESLAKLVAAGAD-YKKA--RLSFQEYFEKLDKDAERWGKPFAA 759 (1239)
T ss_pred eeccCCC-CCeEEEEEecCCCceeccCHHHHHHHHHHHHHhhhheeCCc-HHHE--EEecccccccCCCChhHHhHHHHH
Confidence 6655443 45799999999999999999999999999999999999986 4556 55553322 4577776655 48
Q ss_pred HHHHHHHHHHcCccccccccCccceE
Q psy2354 714 CQAMCDIMGEFGIAVDGGKDSLSMAA 739 (749)
Q Consensus 714 ~~gl~d~~~~lg~PvvgGkdSls~~~ 739 (749)
+.|++|+|++||+|+|||||||||++
T Consensus 760 l~ga~~a~~~lgipvigGKdSmsn~~ 785 (1239)
T TIGR01857 760 LLGAIKAQIDLGLPAIGGKDSMSGTF 785 (1239)
T ss_pred HHHHHHHHHHhCCCCCcceecCcccc
Confidence 99999999999999999999999976
No 14
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=100.00 E-value=9.4e-39 Score=394.07 Aligned_cols=367 Identities=20% Similarity=0.222 Sum_probs=266.2
Q ss_pred CcccccccccccccCCCceE-EecccccC---------CCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeE
Q psy2354 281 GAGGNGNVLKEIVEPVGAVV-FTESFLLG---------DPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQ 350 (749)
Q Consensus 281 GaGG~~na~~El~~~~G~~i-~l~~v~~~---------~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~ 350 (749)
|++.++|.++ ++.+||.+ .++.-..+ .|.|...-|++.+- + .....- .+++-.+.
T Consensus 368 Gis~~gn~~G--~Pvv~G~Vs~yne~~~~~~~~~~~~i~P~~~vg~vG~i~~-~-----------~~~~~~-~~~Gd~Iv 432 (1290)
T PRK05297 368 GGAAFNNEFG--RPNLLGYFRTFEQKVNSHNEEVRGYHKPIMLAGGIGNIRA-D-----------HVQKGE-IPVGAKLI 432 (1290)
T ss_pred cHHHHhhhhC--CCccceEEEEEeccccCccccccccccceEEEEEEEEEeh-h-----------hccccC-CCCCCEEE
Confidence 8999999999 77789998 67765533 78888888887752 1 112222 26788899
Q ss_pred EEEEEeCCCCE------EEEeccccccCCCCCCCCcccccchhhhhcC-----------CC-----cc-----------c
Q psy2354 351 FVGVVTGSNKI------VLAEDKAKYYSNPSSPLQHPVDIQMELICGK-----------MP-----QK-----------M 397 (749)
Q Consensus 351 vVG~~T~~~~l------~~~~~~f~~~~~~~~~~~~~vdlp~~~l~~~-----------~p-----~~-----------M 397 (749)
++|..|++++| ++.+..+.+. ......+.+|++++..+.+ -+ ++ |
T Consensus 433 llG~~~~rdglgGs~~ss~~~g~~~~~--~~~~~Vq~~d~~~ek~~~~~i~~~~~~~~~~lI~s~hDvgaGGLa~AL~Em 510 (1290)
T PRK05297 433 VLGGPAMRIGLGGGAASSMASGQSSED--LDFASVQRGNPEMERRCQEVIDRCWQLGDDNPILSIHDVGAGGLSNAFPEL 510 (1290)
T ss_pred EECCCCCCCCccHHHHHHHHhcccccc--cccCCCCcCCHHHHHHHHHHHHHHHHhcccCCeeEEecCCccHHHHHHHHH
Confidence 99998887776 2222111110 0112345677776554211 11 11 9
Q ss_pred cccCCccEEEEcCC---CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEE--
Q psy2354 398 AFAGLSGMTVDIPS---DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAV-- 471 (749)
Q Consensus 398 Afag~~G~~I~L~~---~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~-- 471 (749)
|+++++|++|+|++ ++.+++|+|+||||+| |||+.|+++++++|+++|+++++++.+||+||+ + ++++|.+
T Consensus 511 a~~~g~G~~idL~~vp~~~~~l~p~eil~SESQeRmlv~V~~e~~e~~~~i~~~~~l~~~vIG~vt~-~--~~l~v~~~~ 587 (1290)
T PRK05297 511 VNDGGRGGRFDLRKIPNDEPGMSPLEIWCNESQERYVLAIAPEDLELFEAICERERCPFAVVGEATE-E--RHLTLEDSH 587 (1290)
T ss_pred HHhcCceEEEEeCCCccccCCCCHHHHHhccccceEEEEEcchhHHHHHHHHHhcCCCEEEEEEEeC-C--CeEEEEecC
Confidence 99999999999986 4667999999999999 899999999999999999999999999999998 6 8899985
Q ss_pred CCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCccc--CCCccccccccCCCcccccchHHHHHh
Q psy2354 472 NNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQY--QPVRDDIVGATLGKKDALGSAKGWAAS 549 (749)
Q Consensus 472 ~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~f--~pPkVDl~~~sLdygDvlgsgkgwa~s 549 (749)
+|+.++++++++|.. +.|.+++ ..|+.... .++ |
T Consensus 588 ~g~~~vdl~~~~L~~-----------------------------~~p~~~~~~~~~~~~~~--~~~----------~--- 623 (1290)
T PRK05297 588 FDNKPVDLPLDVLLG-----------------------------KPPKMHRDVKTVKAKGP--ALD----------Y--- 623 (1290)
T ss_pred CCceEEEEEHHHhcC-----------------------------CCCceecCccccccccc--ccC----------C---
Confidence 788899999999976 2444431 11110000 000 0
Q ss_pred hccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCccee--eeEEEEecCCCccc
Q psy2354 550 LLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFEC--RYSTVKIMKSPAIM 627 (749)
Q Consensus 550 iL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEs--r~~~V~I~~s~Sv~ 627 (749)
...++++.+.+.+.+++ || .+.||.. ||++ .-.+|.-+--.-.-
T Consensus 624 --~~~~~~~~l~~vL~~pn-----V~-------SK~~l~~--------------------~~D~~V~g~tv~~p~vGp~q 669 (1290)
T PRK05297 624 --SGIDLAEAVERVLRLPT-----VA-------SKSFLIT--------------------IGDRSVTGLVARDQMVGPWQ 669 (1290)
T ss_pred --CCcCHHHHHHHHhcCCc-----cc-------cccchhh--------------------ccCcccCCCEeecCCcCCCC
Confidence 11246888889999888 66 5677762 1111 00011000000001
Q ss_pred ccCCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCCh
Q psy2354 628 LRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEG 707 (749)
Q Consensus 628 l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~ 707 (749)
+++.+.+++.+. | +..++.++++|+||+++++|||+||++||+||+|||+|+|+.+++++++++||||++++|++.
T Consensus 670 ~p~~DaaV~~~~--~--~~~~g~ama~G~~P~~~~~dP~~ga~~AV~EA~~Nlvaag~~~~~~i~ls~N~~~~~~~p~~~ 745 (1290)
T PRK05297 670 VPVADCAVTAAS--Y--DGYAGEAMAMGERTPVALLDAAASARMAVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPGED 745 (1290)
T ss_pred CCCCCeEEEEec--C--CCCeEEEEEEcCCCCeeccCHHHHHHHHHHHHHhhheecCCccccceEEEEEEeccCCCCchH
Confidence 123445555432 3 246789999999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHcCccccccccCccceEecC----CceeeCC
Q psy2354 708 AALFDACQAMC-DIMGEFGIAVDGGKDSLSMAARVG----KETVKAP 749 (749)
Q Consensus 708 ~~l~~a~~gl~-d~~~~lg~PvvgGkdSls~~~~~~----~~~v~~p 749 (749)
++|++|++||+ |+|++||+|||||||||||++.|+ ++.|++|
T Consensus 746 a~L~~av~a~~~e~c~~LgipiigGkdSmS~~t~yne~~~~~~v~iP 792 (1290)
T PRK05297 746 ARLYDAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEVTSP 792 (1290)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccccchhcCCccccccCCCCCcceeC
Confidence 99999999999 999999999999999999998884 2446665
No 15
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=8.2e-38 Score=371.78 Aligned_cols=368 Identities=21% Similarity=0.272 Sum_probs=269.7
Q ss_pred eEEeeeeeecCCCCCCcccc---cccCc-cccc-ccCCccccccee---------eEE----------------------
Q psy2354 171 VVFTESFLLGDPSISTLELW---GAEYQ-ENNA-LLCKPLHCKTLR---------MIS---------------------- 214 (749)
Q Consensus 171 ~~~~~~~~~~~l~~p~~~~w---~~~~p-~~~a-~fg~p~~~g~~r---------m~~---------------------- 214 (749)
+.++.+++++++..+. ..| .+-+= ...+ .||.|++.|.+. ++.
T Consensus 109 ~~~~~~l~~~~~~~~~-~~~~l~~~~~Gi~~~~~~~Gv~ivGG~t~~~~~~~~~~~v~~t~iG~~~~~~~~~~~~a~~GD 187 (715)
T TIGR01736 109 IALLDSLRFGPLDDPK-NRYLFEGVVAGISDYGNRIGVPTVGGEVEFDESYNGNPLVNVMCVGLVRKDDIVTGKAKGPGN 187 (715)
T ss_pred eeEEEEeccCCCCCcc-hHHHHHHHHHHHHHhccccCCCccceEEEEecCcCCCCeEEEEEEEEEchHHcccCCCCCCCC
Confidence 7778888888865432 113 11110 0011 199999999884 122
Q ss_pred --EEeeCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCccccccccc
Q psy2354 215 --AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLK 290 (749)
Q Consensus 215 --v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~ 290 (749)
|++||++||+|+||+ ++...+++..+.++++||++||+|+|++ ++++.++. +.+.|.++||+|+||+.+++.
T Consensus 188 ~Iv~~G~~~G~~g~gg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~l~-~~~~v~a~~Dis~gGL~~~l~ 263 (715)
T TIGR01736 188 KLVLVGGKTGRDGIGGATFASEELSEEAEEEDRPAVQVGDPFTEKLL---IEATLEAV-DTGLVKGIKDLGAAGLTSASS 263 (715)
T ss_pred EEEEeCCCCCcCCccHHHHHHHHhccccccccCcccccCCcHHHHHH---HHHHHHHh-ccCCEEEEEEcCCchHHHhHH
Confidence 777889999999998 5554444334557999999999999998 88888887 888999999999999999999
Q ss_pred ccccC--CCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccc
Q psy2354 291 EIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKA 368 (749)
Q Consensus 291 El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f 368 (749)
||+.. +|++|+++++|+++++|+|+|+|++|+||||+++|+|++.+.|+++|+++++++++||++|+++++++.+
T Consensus 264 ema~~s~~G~~I~l~~iP~~~~~~~~~e~~~se~qe~ll~~v~~~~~~~~~~~~~~~g~~~~vIG~v~~~~~~~v~~--- 340 (715)
T TIGR01736 264 EMAAKGGLGAEIYLDKVPLREPGMTPYEIMLSESQERMLLVVAPEDVEEVLEIFEKYELPASVIGEVTDEGRIRLYY--- 340 (715)
T ss_pred HHhccCCcEEEEEcccCccCCCCCCHHHHHHhcccceEEEEEChhhHHHHHHHHHHcCCCEEEEEEEecCCeEEEEE---
Confidence 99984 8999999999999999999999999999999999999999999999999999999999999988899888
Q ss_pred cccCCCCCCCCcccccchhhhhcCCCccccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHHHHHHc
Q psy2354 369 KYYSNPSSPLQHPVDIQMELICGKMPQKMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAA 448 (749)
Q Consensus 369 ~~~~~~~~~~~~~vdlp~~~l~~~~p~~MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~ 448 (749)
.++.++|+|++.|.. +|++- .+.. +++.
T Consensus 341 --------~g~~~~~~~~~~l~~-~p~~~-----------~~~~---------------------~~~~----------- 368 (715)
T TIGR01736 341 --------KGEVVADLPIELLAD-APEYE-----------RPSE---------------------PPKY----------- 368 (715)
T ss_pred --------CCceEEEeeHHHHcC-CCcee-----------cccc---------------------cccc-----------
Confidence 678899999998766 66410 0000 0000
Q ss_pred CCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcccCCCccc
Q psy2354 449 NVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQPVRDD 528 (749)
Q Consensus 449 gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~f~pPkVD 528 (749)
.. . . . . .+. |
T Consensus 369 ----------~~-~--~--~----~-----~~~-------------------------------------------~--- 378 (715)
T TIGR01736 369 ----------PE-E--E--K----E-----PEP-------------------------------------------P--- 378 (715)
T ss_pred ----------cc-c--c--c----c-----cCC-------------------------------------------c---
Confidence 00 0 0 0 0 000 0
Q ss_pred cccccCCCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCC
Q psy2354 529 IVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNS 608 (749)
Q Consensus 529 l~~~sLdygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s 608 (749)
..+.+.+.+.+.+++ || .+.||..
T Consensus 379 -------------------------~~~~~~~~~~l~~~~-----v~-------sK~~i~~------------------- 402 (715)
T TIGR01736 379 -------------------------ADLEDAFLKVLSSPN-----IA-------SKEWVYR------------------- 402 (715)
T ss_pred -------------------------ccHHHHHHHHhCCCc-----cc-------ChhhHHh-------------------
Confidence 013334444455554 22 3555541
Q ss_pred CcceeeeEEEEecCCCcccccCCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCc
Q psy2354 609 ERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDL 688 (749)
Q Consensus 609 ~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l 688 (749)
||++ .| +...+.-+|-+.+++.+. .+...+.++++|.+|+++.+|||.+|+.||+|+++|++|+|+.|+
T Consensus 403 -~~d~---~v---~~~~~~~pgdDaaVi~~~----~~~~~glv~t~D~~~~~~~~~P~~~g~~aV~~~vsDiaa~Ga~P~ 471 (715)
T TIGR01736 403 -QYDH---EV---QTRTVVKPGEDAAVLRIK----ETGKLGLALTADCNPRYVYLDPYAGAAGAVAEAYRNLAAVGAEPL 471 (715)
T ss_pred -hCCC---cc---CCCeEeccCCceEEEEec----CCCceEEEEEecCCCCchhcCHHHHHHHHHHHHHHHHhhcCCeeh
Confidence 1111 01 122233334455666541 222346899999999999999999999999999999999999888
Q ss_pred cccccccccccccCCCCCh---HHHHHHHHHHHHHHHHcCccccccccCccceEe
Q psy2354 689 KDVKCSGNWMWAAKLPGEG---AALFDACQAMCDIMGEFGIAVDGGKDSLSMAAR 740 (749)
Q Consensus 689 ~~v~~~~Nf~~~~~~P~~~---~~l~~a~~gl~d~~~~lg~PvvgGkdSls~~~~ 740 (749)
. +.+++|| ++|+++ ++|.++++||.++|++||+|+|||++||++++.
T Consensus 472 ~-~~~~l~~----g~p~~~~~~~~l~~~~~gi~~~~~~~gv~ivGG~ts~~~~~~ 521 (715)
T TIGR01736 472 A-AVDCLNF----GNPERPEVYWQFVEAVKGLGDACRALGTPVVGGNVSLYNETN 521 (715)
T ss_pred h-heeeecc----CCCCChhHHHHHHHHHHHHHHHHHHhCCCcccceeeeccccC
Confidence 7 5556666 556654 456789999999999999999999999988653
No 16
>KOG1907|consensus
Probab=99.95 E-value=1e-27 Score=271.95 Aligned_cols=318 Identities=33% Similarity=0.402 Sum_probs=217.2
Q ss_pred CCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHh--hcCCCeEEEEEEeCCCCE--EEEecccccc
Q psy2354 296 VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISA--REKCPVQFVGVVTGSNKI--VLAEDKAKYY 371 (749)
Q Consensus 296 ~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~--re~~~~~vVG~~T~~~~l--~~~~~~f~~~ 371 (749)
--+++|+..|+.+||-|+- ++..+-+.|. .|+.|+.-|..+. .|+. ++..
T Consensus 478 g~aeLDFaaVQRGdaEM~~-------------------kl~rVvrAC~~lge~NpI~sIHDqG-AGGn~NvlkE------ 531 (1320)
T KOG1907|consen 478 GSAELDFAAVQRGDAEMER-------------------KLQRVVRACAELGENNPIQSIHDQG-AGGNGNVLKE------ 531 (1320)
T ss_pred CccccchHHhhcCCHHHHH-------------------HHHHHHHHHHHhcCCCceeEeeccC-CCccccccHh------
Confidence 3578899999999986642 3566666663 4788988888775 4443 2211
Q ss_pred CCCCCCCCcccccchhhhhcCCCccccccCCccEEEEcCC---CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHH
Q psy2354 372 SNPSSPLQHPVDIQMELICGKMPQKMAFAGLSGMTVDIPS---DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKA 447 (749)
Q Consensus 372 ~~~~~~~~~~vdlp~~~l~~~~p~~MAfag~~G~~I~L~~---~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~ 447 (749)
|+ -.+.+|+++++.. .+++|+|+|+|.+|+| +-++-|++++++.+.+||++
T Consensus 532 -----------------LV--------~~~~~Ga~~~~r~~~~gdpsmS~~EiW~aEyQE~~allv~a~~l~~le~IckR 586 (1320)
T KOG1907|consen 532 -----------------LV--------EDNDLGATFDSRTFQLGDPSMSPMEIWCAEYQENYALLVKAEDLDILESICKR 586 (1320)
T ss_pred -----------------hc--------cccCCccEEEeeeeecCCCCCCHHHHhhhhhhhcceeeeCHHHHHHHHHHHHh
Confidence 11 2467899999874 4568999999999999 89999999999999999999
Q ss_pred cCCCeeEeeEeecCCCCcEEEEEECC--EEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCccc--C
Q psy2354 448 ANVSCKKIGVCDAFGMNAKISVAVNN--EPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQY--Q 523 (749)
Q Consensus 448 ~gv~~~~IG~vt~~~~~~~i~I~~~g--~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~f--~ 523 (749)
.-++..+||++|. + +++++.-.- ++-+|+++..|.. +.|+..| +
T Consensus 587 ERcp~svVG~vt~-e--qR~~l~d~~~~~~aidl~~~~llG-----------------------------~~pK~s~~l~ 634 (1320)
T KOG1907|consen 587 ERCPVSVVGEVTG-E--QRVILLDKLAKETAIDLEMRQLLG-----------------------------KPPKMSRKLK 634 (1320)
T ss_pred ccCCeeEEEEEcc-C--ceEEEecCCCCCCccCCchHhhcC-----------------------------CCcccccccc
Confidence 9999999999998 7 777664321 2233444433322 1222221 1
Q ss_pred -CCccccccccCCCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCccccccc
Q psy2354 524 -PVRDDIVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVM 602 (749)
Q Consensus 524 -pPkVDl~~~sLdygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~ 602 (749)
+|++ + .+| .+-.+-.+++++++-+.-|- | +++ +
T Consensus 635 ~~~~~-l--k~l--------------~lp~~~~l~dAl~RVL~Lps-----V-------~SK-----------------r 668 (1320)
T KOG1907|consen 635 RAPRV-L--KKL--------------ELPSGLTLRDALERVLRLPS-----V-------ASK-----------------R 668 (1320)
T ss_pred ccccc-c--ccc--------------cCCCCChHHHHHHHHhcccc-----c-------ccc-----------------c
Confidence 1111 0 001 01112235666666664321 0 001 1
Q ss_pred ccccCCCcceeeeEEEEecC--CCcccccCCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhc
Q psy2354 603 LSHNNSERFECRYSTVKIMK--SPAIMLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNL 680 (749)
Q Consensus 603 ~~~N~s~rfEsr~~~V~I~~--s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNl 680 (749)
|..|+-.| -|+--|.+ .-.+|--.+ ..+-=+..+|- ..++.|+++|++|.+.++||.++|+++|+||+.||
T Consensus 669 fLttkvDR----sVtGLiaqqQ~VGPlqvpl-ADvavt~~S~~--~~tG~A~amGeqPik~Lida~a~ARm~VaE~l~NL 741 (1320)
T KOG1907|consen 669 FLTTKVDR----SVTGLIAQQQCVGPLQVPL-ADVAVTATSHF--DTTGEAVAMGEQPIKALIDAAASARMCVAEALMNL 741 (1320)
T ss_pred eeeeeccc----hhhheeehhhccCcccccc-eeeeEEEEEEe--ccccccccccccchHhhhCHHHHhHHHHHHHHHHh
Confidence 11111100 11111111 001111111 11122234552 23678999999999999999999999999999999
Q ss_pred ccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCccceEecCCceeeCC
Q psy2354 681 VFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSMAARVGKETVKAP 749 (749)
Q Consensus 681 va~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~~~~~~~~~v~~p 749 (749)
+++.+..|++|+++.||||+++.|++.+.||+||++++....+|||+|.||||||||++.|+|++||||
T Consensus 742 v~a~i~sL~dvK~SgNWM~aak~~GEGarlydAv~aL~~~L~eLgiAIdgGKDSlSMa~k~~ge~VkaP 810 (1320)
T KOG1907|consen 742 VAAKITSLKDVKLSGNWMWAAKHPGEGARLYDAVQALCLGLCELGIAIDGGKDSLSMAMKWDGEVVKAP 810 (1320)
T ss_pred HhhcccchhheeeccceeecccCCCcchHHHHHHHHHHHHHHHhceeecCCccchhhheeeCCeEEecC
Confidence 999999999999999999999999999999999999997777999999999999999999999999998
No 17
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=99.91 E-value=6.7e-24 Score=261.49 Aligned_cols=99 Identities=31% Similarity=0.386 Sum_probs=90.3
Q ss_pred eeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcC
Q psy2354 646 MLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFG 725 (749)
Q Consensus 646 r~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg 725 (749)
..++.++++|+||+++++|||+||++||+||+||++|+|++.++.+.+++||+|| ..|+..++|++|++||+|+|++||
T Consensus 591 ~~~G~a~a~Ge~p~~~~~DP~~ga~~AV~Ea~~Nlaaa~~~~l~pi~lt~n~~~P-~~~~~~~~L~~av~ai~e~C~~Lg 669 (1202)
T TIGR01739 591 ALSCVCSALGEQTYKVQADPKRGATYAITEALLNLSLSPWNTLEDVIITLSVTWS-PTDHVYSLLKDALRACKDFCEELG 669 (1202)
T ss_pred CceEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHHhCCccccCCcEEEEEecCC-CCCchHHHHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999999999999999998889999999999999 567788999999999999999999
Q ss_pred ccccccccCccceEecCCceeeCC
Q psy2354 726 IAVDGGKDSLSMAARVGKETVKAP 749 (749)
Q Consensus 726 ~PvvgGkdSls~~~~~~~~~v~~p 749 (749)
+||+|||||+||+ +++|++|
T Consensus 670 ipiv~G~~S~s~~----~~~v~~P 689 (1202)
T TIGR01739 670 VSFTVTSAASSPT----QDSGSAP 689 (1202)
T ss_pred CcEEeeeccccCC----CCCccCC
Confidence 9999999999885 3455554
No 18
>PHA03366 FGAM-synthase; Provisional
Probab=99.91 E-value=2.6e-24 Score=265.97 Aligned_cols=103 Identities=26% Similarity=0.348 Sum_probs=94.4
Q ss_pred eeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcC
Q psy2354 646 MLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFG 725 (749)
Q Consensus 646 r~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg 725 (749)
..++.++++|+||+++++|||+||++||+||+|||+++|+.++++|++|+||+|+ .+|++.++|++||+||+|+|++||
T Consensus 687 ~~~G~A~siGe~p~~~~lDP~~Ga~~AVaEAl~NL~aa~~~~L~~i~lslNf~wP-~~p~~~a~L~eav~ai~e~C~~Lg 765 (1304)
T PHA03366 687 AVPGTCSALGEQGYKVQLDPILGAKYAIVEALTNLMLAPVANLEDITITLSVTWP-PTDQAASELYRALAACKEFCRELG 765 (1304)
T ss_pred CCCEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHhhcCCccchheEEEEEecCC-CCcchHHHHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999999999999999889999999999 479999999999999999999999
Q ss_pred ccccccccCccceEecCCceeeCC
Q psy2354 726 IAVDGGKDSLSMAARVGKETVKAP 749 (749)
Q Consensus 726 ~PvvgGkdSls~~~~~~~~~v~~p 749 (749)
|||++|||||||.+.-+++.|++|
T Consensus 766 IpIv~G~~S~yne~~~~~~~i~~p 789 (1304)
T PHA03366 766 VNFTFTSASSSPRQDQPPQPGPLF 789 (1304)
T ss_pred CCEeeeecccccccCCCCccccCC
Confidence 999999999999763344566654
No 19
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.90 E-value=2.7e-24 Score=216.83 Aligned_cols=101 Identities=26% Similarity=0.440 Sum_probs=93.9
Q ss_pred cCCCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcce
Q psy2354 533 TLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFE 612 (749)
Q Consensus 533 sLdygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfE 612 (749)
-++|||+|+ .||++++ +.++++|.+|++ +++++||||||||+|++.|||| | +|++|.|.|||
T Consensus 52 GFSyGDyLr--~Gaiaa~---~~v~~~v~~~a~-~g~~vLGICNGfQiL~e~gLlP---G---------al~~N~s~~F~ 113 (231)
T COG0047 52 GFSYGDYLR--AGAIAAI---APVMDEVREFAE-KGKPVLGICNGFQILSEAGLLP---G---------ALTRNESLRFE 113 (231)
T ss_pred CCCcccccC--cchHHhh---HHHHHHHHHHHH-CCCeEEEEcchhHHHHHcCcCC---c---------ceecCCCCceE
Confidence 456999999 5688888 789999999999 8999999999999999999999 3 69999999999
Q ss_pred eeeEEEEecCCCcccccCCC-CceeeEEeecccceeeEee
Q psy2354 613 CRYSTVKIMKSPAIMLRNLE-NSVLGVWVAHGEVMLRGAA 651 (749)
Q Consensus 613 sr~~~V~I~~s~Sv~l~gm~-Gsvlpi~vaHGeGr~~~~a 651 (749)
|||+.++|.+++|+|+++|+ |++++|+|||||||+++..
T Consensus 114 cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~ 153 (231)
T COG0047 114 CRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADD 153 (231)
T ss_pred EEEEEEEEecCCCHHHHhcCCCceEEEEEeecceeEEccH
Confidence 99999999999999999998 5999999999999998864
No 20
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.90 E-value=2.9e-24 Score=225.60 Aligned_cols=111 Identities=34% Similarity=0.519 Sum_probs=90.5
Q ss_pred CCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceee
Q psy2354 535 GKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECR 614 (749)
Q Consensus 535 dygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr 614 (749)
+|||.++||++||..+++|+.+++++++|++|+|+|+||||||||+|+++||||..+.....+++ +|++|+|+|||||
T Consensus 57 S~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~--~L~~N~s~~fe~r 134 (259)
T PF13507_consen 57 SYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSP--ALTPNASGRFESR 134 (259)
T ss_dssp GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT----EEE--TTSS-EEE
T ss_pred CccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCc--EEcCCCCCCeEEE
Confidence 49999999999999999999999999999999999999999999999999999964333223445 9999999999999
Q ss_pred eEEEEe-cCCCcccccCCCCceeeEEeecccceeeE
Q psy2354 615 YSTVKI-MKSPAIMLRNLENSVLGVWVAHGEVMLRG 649 (749)
Q Consensus 615 ~~~V~I-~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~ 649 (749)
|++++| .+|+++|++++++..+| |||||||+.+
T Consensus 135 wv~~~v~~~s~~~~~~~~~~~~lP--iahgeG~~~~ 168 (259)
T PF13507_consen 135 WVNLVVNENSPSIFLRGLEGIVLP--IAHGEGRFYA 168 (259)
T ss_dssp EEEEEE--SSTTCCCTTTTCEEEE--EEESS-EEE-
T ss_pred EEEEEEecCCcceecCCCCEEEEE--EecCcceeec
Confidence 999988 47999999999877766 8999999988
No 21
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.89 E-value=2.4e-23 Score=240.41 Aligned_cols=190 Identities=19% Similarity=0.180 Sum_probs=168.1
Q ss_pred cCcccccccccccccCCCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCC
Q psy2354 280 QGAGGNGNVLKEIVEPVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSN 359 (749)
Q Consensus 280 ~GaGG~~na~~El~~~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~ 359 (749)
-|+++|+|+++ ++++|+++.+|.-+.++|.|+++++++.. +.+.++..+.+.+.++.++|-.|+++
T Consensus 160 ~Gia~YGN~iG--vPtv~Ge~~fd~~y~~npLvna~~vG~i~------------~~~i~~~~a~~~G~~li~~Gg~TgrD 225 (743)
T COG0046 160 AGIAAYGNEIG--VPTVGGEFRFDESYVGNPLVNAGCVGLIR------------KEHIVKGEAIGPGDKLILLGGKTGRD 225 (743)
T ss_pred cchhhcCcccc--ccccceEEEEccccCCCceEEEEEeeecc------------hhheeeccCCCCCCEEEEEcCCcccc
Confidence 36999999999 99999999999999999999999999875 33577778899999999999999999
Q ss_pred CE---EEEeccccccC-CCCCCCCcccccchhhhhc-------------CCCcc-----------ccccCCccEEEEcCC
Q psy2354 360 KI---VLAEDKAKYYS-NPSSPLQHPVDIQMELICG-------------KMPQK-----------MAFAGLSGMTVDIPS 411 (749)
Q Consensus 360 ~l---~~~~~~f~~~~-~~~~~~~~~vdlp~~~l~~-------------~~p~~-----------MAfag~~G~~I~L~~ 411 (749)
+| ++++.+|.+.+ ..++...++.|.+|+.++- .+.+| ||.+|+.|++|+||+
T Consensus 226 GigGat~aS~~~~~~~~e~dr~aVQvGdPf~Ek~l~ea~le~~~~~~I~~i~DlGAgGLs~A~~Ela~~gg~G~~i~Ld~ 305 (743)
T COG0046 226 GIGGATFASMELGEESEEEDRPSVQVGDPFMEKRLQEAILECVQTGLIKGIQDLGAGGLSCAISELAAKGGLGAEIDLDK 305 (743)
T ss_pred ccCchhhhhhhhCcchhhhcCCccccCChHHHHHHHHHHHHHHhcCCeEEEeccCCchhhhhHHHHHhccCCeEEEEhhc
Confidence 98 78887776333 4444567788888877652 33344 999999999999986
Q ss_pred ---CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHH
Q psy2354 412 ---DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFL 486 (749)
Q Consensus 412 ---~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~ 486 (749)
++++|+|+|+|+|||| ||++.|.|+|+++|+++|+||++++.+||++|+ + ++++++|+|++|+++|++.|.+
T Consensus 306 VP~rE~gMsp~Ei~~SESQERMllvv~p~~~e~~~~i~~k~~l~~aVVG~vT~-~--~~~~~~~~ge~v~dlP~~~L~~ 381 (743)
T COG0046 306 VPLREPGMSPYEIWLSESQERMLLVVAPEDVEEFLEICEKERLPAAVVGEVTD-E--PRLVVDWKGEPVVDLPIDVLAG 381 (743)
T ss_pred CcccCCCCCHHHHHHhccchheEEEEccccHHHHHHHHHHcCCCeEEEEEEec-C--ceEEEEECCCEEEeccHHHHcC
Confidence 8899999999999999 999999999999999999999999999999999 7 9999999999999999999965
No 22
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.78 E-value=3.5e-19 Score=187.69 Aligned_cols=110 Identities=27% Similarity=0.360 Sum_probs=93.4
Q ss_pred CCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceee
Q psy2354 535 GKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECR 614 (749)
Q Consensus 535 dygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr 614 (749)
+|+|.++++..|++.+. +.+++.+.+|+++ ++++||||||||+|++.|++|..++. .+.+.++|++|+|+|||||
T Consensus 59 s~gD~l~~g~~~~~~l~--~~l~~~Ik~f~~~-gkpVLGICnG~QlLa~~GlLpg~~~~--~~~~~~~L~~N~s~~f~~~ 133 (261)
T PRK01175 59 SAGDYIRAGAIFAARLK--AVLRKDIEEFIDE-GYPIIGICNGFQVLVELGLLPGFDEI--AEKPEMALTVNESNRFECR 133 (261)
T ss_pred CcccccccchhhHHHHH--HHHHHHHHHHHHC-CCeEEEECHHHHHHHHCCCCCCCCcc--ccCCcceEeecCCCCeEEe
Confidence 47898988887766543 4677889999875 79999999999999999999953222 1233469999999999999
Q ss_pred eEEEEecCCCcccccCCCCceeeEEeecccceeeE
Q psy2354 615 YSTVKIMKSPAIMLRNLENSVLGVWVAHGEVMLRG 649 (749)
Q Consensus 615 ~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~ 649 (749)
|++++|..++|+|+++|+|+++.+||+|||||+.+
T Consensus 134 ~~~~~v~~~~s~~~~~~~~~~~~~piah~eG~~~~ 168 (261)
T PRK01175 134 PTYLKKENRKCIFTKLLKKDVFQVPVAHAEGRVVF 168 (261)
T ss_pred eeEEEECCCCChhHhccCCCEEEEeeEcCCcceEe
Confidence 99999999999999999999999999999999983
No 23
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.77 E-value=2.6e-18 Score=186.11 Aligned_cols=202 Identities=26% Similarity=0.315 Sum_probs=160.2
Q ss_pred hHHhhccc--cCc--eEEeeeeeecCCCCCCcc------c-ccc-cCcccccc----cCCcccccceee---------EE
Q psy2354 160 VLKEIVEP--VGA--VVFTESFLLGDPSISTLE------L-WGA-EYQENNAL----LCKPLHCKTLRM---------IS 214 (749)
Q Consensus 160 aLe~~N~e--LGL--~~~~~~~~~~~l~~p~~~------~-w~~-~~p~~~a~----fg~p~~~g~~rm---------~~ 214 (749)
.-+.+|.- +|- +.++..++++++..|+.+ . |.+ ..-.-++. ||.|++.|-+.+ +.
T Consensus 51 v~~~vsDiaamGa~P~~~~~~l~~p~~~~~~~~~~~~~~~~~~l~~~~~Gi~~~~~~~gv~lvGGdt~~~~~~~~~p~~~ 130 (313)
T cd02203 51 VGGIIRDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGISDYGNCIGIPTVGGEVRFDPSYYGNPLVN 130 (313)
T ss_pred hhhhhhcccccCCEEEEEeeEEeecCCcccccccccccCHHHHHHHHHHHHHHHHHHhCCceeeeEEEEECCcCCCceEE
Confidence 34444443 444 777788999988775432 2 310 11111222 999999998751 11
Q ss_pred ------------------------EEeeCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHHHHHHHHHhCC
Q psy2354 215 ------------------------AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELP 268 (749)
Q Consensus 215 ------------------------v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~ 268 (749)
+++|++++++|+||+ .+...+....+.++.++|+.+|++++++++++..+.
T Consensus 131 ~~~~G~~~~~~~~~~~~a~~GD~I~l~G~~~~~~gl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--- 207 (313)
T cd02203 131 VGCVGIVPKDHIVKSKAPGPGDLVVLVGGRTGRDGIGGATFSSKELSENSSELDRPAVQVGDPFMEKKLQEAILEAR--- 207 (313)
T ss_pred EEEEEEEehhhcccCCCCCCCCEEEEecCCCCCCCccHHHHHHHHhcCccccccCCCCCccCHHHHHHHHHHHHHHH---
Confidence 788889999999998 333333322345688999999999999987777776
Q ss_pred CCCCCEEEEcccCcccccccccccccC--CCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcC
Q psy2354 269 NNLNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREK 346 (749)
Q Consensus 269 ~~~~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~ 346 (749)
..+.|.++||++.||+..++.||+.. +|++|+++++|+.+..++|+++|.+|+|+|+++.++|++.+.|++++++.+
T Consensus 208 -~~~~v~a~~DiS~gGL~~~L~ema~as~~G~~I~~~~iP~~~~~~~~~~~~~se~~~~ll~tv~~~~~~~~~~~l~~~g 286 (313)
T cd02203 208 -ETGLIVGIQDLGAGGLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQERMLLVVPPEDLEEFLAICKKED 286 (313)
T ss_pred -hcCCEEEEEecCCchHHHHHHHHHhcCCceEEEEecCCcccCCCCCHHHHHhcCccccEEEEECHHHHHHHHHHHHHCC
Confidence 44679999999999999999999874 799999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeCCCCEEEEe
Q psy2354 347 CPVQFVGVVTGSNKIVLAE 365 (749)
Q Consensus 347 ~~~~vVG~~T~~~~l~~~~ 365 (749)
+++++||++|+++++++.+
T Consensus 287 i~~~~IG~vt~~~~~~l~~ 305 (313)
T cd02203 287 LEAAVIGEVTDDGRLRLYY 305 (313)
T ss_pred CCEEEEEEECCCCeEEEEE
Confidence 9999999999989999987
No 24
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.69 E-value=3.8e-17 Score=173.70 Aligned_cols=134 Identities=19% Similarity=0.143 Sum_probs=119.3
Q ss_pred EEeeCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCccccccccccc
Q psy2354 215 AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEI 292 (749)
Q Consensus 215 v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El 292 (749)
+++|++++++|++|+ ++..... ..+++..+|+.||+.+|++.+.+..+++ .++|.++||++.||+..++.||
T Consensus 134 ~~~g~~~~~~g~~Gs~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~i~a~hDvs~GGL~~aL~Em 207 (272)
T cd02193 134 LLIGGGKGHNGLGGTALASVALSY--RQLGDKSAQVRDPAQEKGFYEAMQALVA----AGKLLAWHDRGAGGLLVALAEL 207 (272)
T ss_pred EEECCCCCCCccchHHHHhhhhhh--cccCCCCCCCCCHHHHHHHHHHHHHHHH----CCCEEEEeeCCcchHHHHHHHH
Confidence 578999999999999 4442111 2366778999999999999888888774 4589999999999999999999
Q ss_pred ccC--CCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEE
Q psy2354 293 VEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGV 354 (749)
Q Consensus 293 ~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~ 354 (749)
+.. +|++|+++++|+.+++|+|+++|++|||+|+++.|+|++.+.|+++++++++++++||+
T Consensus 208 a~~s~~G~~i~l~~ip~~~~~~~p~~~~~ses~~~~l~~v~~~~~~~~~~~~~~~gi~~~~IG~ 271 (272)
T cd02193 208 VFAGHCGVQVDLAALGDDEPDMEPLEIALFESQERGVIQVRAEDRDAVEEAQYGLADCVHVLGQ 271 (272)
T ss_pred HhcCCCEEEEEeCCCcCCCCCCCHHHHHHhhhccCeEEEECHHHHHHHHHHHhccCCCeEEecc
Confidence 874 89999999999999999999999999999999999999999999999999999999996
No 25
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.55 E-value=2e-15 Score=174.57 Aligned_cols=187 Identities=16% Similarity=0.100 Sum_probs=138.6
Q ss_pred cccccccccccccCCCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCE
Q psy2354 282 AGGNGNVLKEIVEPVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKI 361 (749)
Q Consensus 282 aGG~~na~~El~~~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l 361 (749)
++.++|.++ ++.+||++.+++-+..+|.++.+.++..+ ++ ..+..-..+.+-.+.++|..||++++
T Consensus 120 I~~~~n~~G--VP~VGGdt~~~~~y~~~plv~vt~vG~v~----------~~--~iv~~~~a~~GD~Ivl~G~~tGrdGi 185 (601)
T PRK14090 120 IADYGNSIG--VPTVGGELRISSLYAHNPLVNVLAAGVVR----------ND--MLVDSKASRPGQVIVIFGGATGRDGI 185 (601)
T ss_pred HHHHHHHhC--CCEeeEEEEEeCCccCCCceEEEEEEEEc----------Cc--cccccCCCCCCCEEEEEcCCCCCCCc
Confidence 445556666 77789999999888888988888888664 11 23334446788999999998886665
Q ss_pred ---EEEeccccccCCCCCCCCcccccchhhhh-------------cCCCcc-----------ccccCCccEEEEcCC---
Q psy2354 362 ---VLAEDKAKYYSNPSSPLQHPVDIQMELIC-------------GKMPQK-----------MAFAGLSGMTVDIPS--- 411 (749)
Q Consensus 362 ---~~~~~~f~~~~~~~~~~~~~vdlp~~~l~-------------~~~p~~-----------MAfag~~G~~I~L~~--- 411 (749)
++.+..+.+.. ..+...+..|..++..+ -.+-++ ||.++++|++|++++
T Consensus 186 ~Gas~as~~l~~~~-~~~~~vq~gd~~~ek~l~e~~l~~~~~glI~a~~DigaGGLa~AL~EmA~~sg~G~~IdLdkVPl 264 (601)
T PRK14090 186 HGASFASEDLTGEK-ATKLSIQVGDPFAEKMLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGGLGAIVHLDRVPL 264 (601)
T ss_pred chHHHHHHHhcCCc-ccccccccCCHHHHHHHHHHHHhHHhcCCeEEeeCCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Confidence 33222221111 00011133344433211 011121 999999999999986
Q ss_pred CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHH
Q psy2354 412 DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFL 486 (749)
Q Consensus 412 ~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~ 486 (749)
++.+|+|+|+|||||| ||++.|+++++++|+++|+++++++.+||+||+ + ++++++|+|+.|+++|+++|.+
T Consensus 265 ~~~~m~p~eil~SESqeRmlv~V~~e~~~~~~~i~~~~~l~a~vIG~Vt~-~--~~l~~~~~g~~v~dlp~~~L~~ 337 (601)
T PRK14090 265 REPDMEPWEILISESQERMAVVTSPEKASRILEIAKKHLLFGDIVAEVID-D--PIYRVMYRDDLVMEVPVQLLAN 337 (601)
T ss_pred CcccCCHHHHHhcCCCCeEEEEECHHHHHHHHHHHHhCCCCEEEEEEEeC-C--ceEEEEECCeEEEEccHHHHhc
Confidence 5668999999999999 799999999999999999999999999999998 7 8899999999999999999976
No 26
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.53 E-value=7.3e-15 Score=156.26 Aligned_cols=91 Identities=32% Similarity=0.546 Sum_probs=83.2
Q ss_pred EeeeccCCCCceeccChHHHHHHHHHHHhhhccccc--CCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCc
Q psy2354 649 GAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAK--ISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGI 726 (749)
Q Consensus 649 ~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~g--a~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~ 726 (749)
+.++++|+||+++.+|||.||+.||+|++||++|+| +.|+. +++||+|++++|++++.+.++++||.|+|++||+
T Consensus 2 ~~a~~~~~~~~~~~~~p~~g~~~av~~~~~diaa~G~~a~P~~---~~~~l~~~~~~p~~~~~l~~~~~gi~~a~~~~g~ 78 (272)
T cd02193 2 GEAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIA---LSANWMASAGHPGEDAILYDAVKGVAELCNQLGL 78 (272)
T ss_pred ccEEeecCCCCccccChHHHHHHHHHHHHhhhhhcCCCccceE---EeeecccCCCCCCHHHHHHHHHHHHHHHhHhhCC
Confidence 478999999999999999999999999999999999 87766 5677777777888889999999999999999999
Q ss_pred cccccccCccceEecC
Q psy2354 727 AVDGGKDSLSMAARVG 742 (749)
Q Consensus 727 PvvgGkdSls~~~~~~ 742 (749)
|++|||+|+|+.++|.
T Consensus 79 pivgG~~s~~~~~~~~ 94 (272)
T cd02193 79 PIPVGKDRMSMKTRWQ 94 (272)
T ss_pred cccCCEeccccceecc
Confidence 9999999999987653
No 27
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.49 E-value=5.9e-14 Score=144.86 Aligned_cols=97 Identities=22% Similarity=0.357 Sum_probs=81.8
Q ss_pred CcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeee
Q psy2354 536 KKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRY 615 (749)
Q Consensus 536 ygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~ 615 (749)
|+|.++++. +..++.+.+.+.+|++ .+++++|||||||+|+..|+++ + ++.+|.|++||+||
T Consensus 53 ~~d~l~~~~-----~~~~~~~~~~l~~~~~-~g~~ilgIC~G~qlLa~~GLL~---g---------~l~~n~~~~~~~~~ 114 (219)
T PRK03619 53 YGDYLRCGA-----IAAFSPIMKAVKEFAE-KGKPVLGICNGFQILTEAGLLP---G---------ALTRNASLKFICRD 114 (219)
T ss_pred hhhhhccch-----hhhchHHHHHHHHHHH-CCCEEEEECHHHHHHHHcCCCC---C---------eEEEcCCCcEEEEE
Confidence 566554432 2234567788888875 6899999999999999999998 2 68899999999999
Q ss_pred EEEEecCCCcccccCC-CCceeeEEeecccceeeEe
Q psy2354 616 STVKIMKSPAIMLRNL-ENSVLGVWVAHGEVMLRGA 650 (749)
Q Consensus 616 ~~V~I~~s~Sv~l~gm-~Gsvlpi~vaHGeGr~~~~ 650 (749)
++|+|..++++|+++| +|+++++|++|||||+.+.
T Consensus 115 v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~ 150 (219)
T PRK03619 115 VHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYAD 150 (219)
T ss_pred EEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEEC
Confidence 9999999999999999 6999999999999998764
No 28
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.47 E-value=6.3e-14 Score=146.40 Aligned_cols=99 Identities=28% Similarity=0.450 Sum_probs=82.7
Q ss_pred CCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceee
Q psy2354 535 GKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECR 614 (749)
Q Consensus 535 dygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr 614 (749)
.|+|.+++++.|+.+.+ +.+.+.+|. +.++++||||||||+|+..|+++. +.++|.+.+|+++
T Consensus 54 ~~~d~l~~~~~~~~~~~----~~~~l~~~~-~~g~pvlGIC~G~QlL~~~gll~g------------~~~~~~~~~~~~~ 116 (238)
T cd01740 54 SYGDYLRAGAIAAASPL----LMEEVKEFA-ERGGLVLGICNGFQILVELGLLPG------------ALIRNKGLKFICR 116 (238)
T ss_pred CcccccccccccccChh----HHHHHHHHH-hCCCeEEEECcHHHHHHHcCCCcc------------ccccCCCCceecc
Confidence 48899988888876653 455555554 569999999999999999999982 3577888889886
Q ss_pred e----EEEEecCCCcccccC-CCCceeeEEeecccceeeEe
Q psy2354 615 Y----STVKIMKSPAIMLRN-LENSVLGVWVAHGEVMLRGA 650 (749)
Q Consensus 615 ~----~~V~I~~s~Sv~l~g-m~Gsvlpi~vaHGeGr~~~~ 650 (749)
| ++++|..++++|+++ +.|+++++|++|||||+++.
T Consensus 117 ~~~~~v~~~v~~~~si~t~~~~~g~~l~~~vaHgeG~~~~~ 157 (238)
T cd01740 117 WQNRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGEGRFYAD 157 (238)
T ss_pred ccCceEEEEEcCCCCceecCCCCCCEEEEEeECCceeeEcC
Confidence 5 999999999999999 68999999999999998764
No 29
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.37 E-value=4.4e-13 Score=160.58 Aligned_cols=188 Identities=23% Similarity=0.250 Sum_probs=138.4
Q ss_pred cccccccccccccCCCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCE
Q psy2354 282 AGGNGNVLKEIVEPVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKI 361 (749)
Q Consensus 282 aGG~~na~~El~~~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l 361 (749)
+..++|.++ ++-+||++.++.-+.++|.++...++..+ ++ ...+.-+++.+-.+.++|.-||..++
T Consensus 148 i~~~~n~~G--vp~vgG~t~~~~~~~~~p~v~~~~iG~~~----------~~--~~~r~~~~~~Gd~Ii~~G~~tg~~Gi 213 (724)
T PRK01213 148 IGGYGNCIG--VPTVGGEVYFDESYNGNPLVNAMCVGLVR----------HD--DIVLAKASGVGNPVVYVGAKTGRDGI 213 (724)
T ss_pred HHHHHHhcC--CCEeeEEEEEeCCcCCCceEEEEEEEEEc----------HH--HcccCCCCCCCCEEEEeCCCcCcccC
Confidence 445556666 77789999988888888888888888664 11 24455556688899999998887776
Q ss_pred E---EEeccccccCCCCCCCCcccccchhhh--------hcCC-----Ccc-----------ccccCCccEEEEcCC---
Q psy2354 362 V---LAEDKAKYYSNPSSPLQHPVDIQMELI--------CGKM-----PQK-----------MAFAGLSGMTVDIPS--- 411 (749)
Q Consensus 362 ~---~~~~~f~~~~~~~~~~~~~vdlp~~~l--------~~~~-----p~~-----------MAfag~~G~~I~L~~--- 411 (749)
- +.+..+.+.....+...+..|..++.. .... -++ ||.++++|++|++++
T Consensus 214 gg~~~~s~~~~~~~~~~~~~vq~g~~~~~~~l~~~~~~~~~~~~v~a~~D~g~gGL~~al~Ema~~s~~G~~I~ld~iP~ 293 (724)
T PRK01213 214 GGASFASAELSEESEEKRPAVQVGDPFMEKLLIEACLELIKTGLVVGIQDMGAAGLTCSSSEMAAKGGLGIELDLDKVPL 293 (724)
T ss_pred cHHHHHHhhhhccccccCcccccCCcHHHHHHHHHHHHHhccCCEEEEEECCCCcHHHhHHHHhccCCcEEEEEcccccc
Confidence 3 433322221110111122223333221 1111 111 999999999999986
Q ss_pred CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHH
Q psy2354 412 DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFL 486 (749)
Q Consensus 412 ~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~ 486 (749)
++.+++|+|+++||+| |||+.|+++++++|+++|+++++++++||+||+ + +++++.++|+.|+++|++.|.+
T Consensus 294 ~~~~~~p~ei~~sesqerml~~v~~~~~~~~~~~~~~~~~~~~vIG~vt~-~--~~~~~~~~g~~v~d~~~~~l~~ 366 (724)
T PRK01213 294 REEGMTPYEIMLSESQERMLLVVKPGKEEEVLAIFEKWDLDAAVIGEVTD-D--GRLRVYHHGEVVADVPAEALAD 366 (724)
T ss_pred cCCCCCHHHHHhccccceEEEEECHHHHHHHHHHHHHcCCCEEEEEEEec-C--CeEEEEECCeEEEEeEHHHhcC
Confidence 4457999999999999 899999999999999999999999999999998 7 8999999999999999999975
No 30
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.33 E-value=2.9e-12 Score=133.02 Aligned_cols=85 Identities=26% Similarity=0.472 Sum_probs=74.7
Q ss_pred ChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCC
Q psy2354 553 NEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLE 632 (749)
Q Consensus 553 n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~ 632 (749)
+..+.+.+.+|.+ .+++++|||+|||+|+..|+++ | ++.+|.+.+|+++|++++|..++++|++++.
T Consensus 64 ~~~~~~~l~~~~~-~g~pvlgIC~G~QlLa~~GlL~---G---------~l~~n~~~~~~~~~~~~~v~~~~~~~~~~~~ 130 (227)
T TIGR01737 64 ASPIMQEVREFAE-KGVPVLGICNGFQILVEAGLLP---G---------ALLPNDSLRFICRWVYLRVENADTIFTKNYK 130 (227)
T ss_pred chHHHHHHHHHHH-cCCEEEEECHHHHHHHHcCCCC---C---------ceeecCCCceEEEeEEEEECCCCChhhccCC
Confidence 4456777777764 5799999999999999999998 2 5789999999999999999988899999998
Q ss_pred -CceeeEEeecccceeeEe
Q psy2354 633 -NSVLGVWVAHGEVMLRGA 650 (749)
Q Consensus 633 -Gsvlpi~vaHGeGr~~~~ 650 (749)
|+++++||+|||||+.+.
T Consensus 131 ~g~~~~~pi~H~eG~y~~~ 149 (227)
T TIGR01737 131 KGEVIRIPIAHGEGRYYAD 149 (227)
T ss_pred CCCEEEEEeEcCCcCeEcC
Confidence 999999999999998654
No 31
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=99.30 E-value=3.8e-13 Score=129.89 Aligned_cols=136 Identities=23% Similarity=0.261 Sum_probs=114.1
Q ss_pred cccccc--cccccCCCCccCCCCccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC--CCce
Q psy2354 224 VGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--VGAV 299 (749)
Q Consensus 224 ~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~--~G~~ 299 (749)
+|+||+ +............. +..|++.++++++....+.+. .+.|.++||+.-||+..++.||+.. +|++
T Consensus 12 ~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~i~a~~DvSdGGL~~~l~em~~~s~~g~~ 85 (153)
T PF02769_consen 12 LGLGGSGLLAARKGGESGGLPD---PLVDAELEPPLLYAVRALAAL---KGLIHAAHDVSDGGLAGALAEMAEASGVGAE 85 (153)
T ss_dssp SSHCHHHHHHHHHTHHHTTHHH---CHHHHHHHHHHHHHHHHHHHH---HTTEEEEEEESTTHHHHHHHHHHHCTTEEEE
T ss_pred CcHHHHHHHHHHhCccccccch---hhhhHHhhHHHHHHHHHhhhh---hcceEEEEecCCchHHHHHHHHHHhCCcceE
Confidence 888888 22222221111111 688999999997777777643 3799999999999999999999986 7999
Q ss_pred EEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCC-eEEEEEEeCCCCEEEEe
Q psy2354 300 VFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCP-VQFVGVVTGSNKIVLAE 365 (749)
Q Consensus 300 i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~-~~vVG~~T~~~~l~~~~ 365 (749)
|+++++|..++..++.++|.+|+|.|++++++|++.+.|.+++++.++| +++||++|+++++++..
T Consensus 86 i~~~~~p~~~~~~~~~~~l~~~~~g~~l~~v~~~~~~~~~~~~~~~g~~~~~~IG~V~~~~~~~v~v 152 (153)
T PF02769_consen 86 IDLDKIPLSDELQSPLEMLFSESEGRLLVAVPPEDAEEFLAALKKAGIPNATVIGEVTEGPGLTVIV 152 (153)
T ss_dssp EEGGGSHHHHHHHHHHHHHHHSSSTEEEEEEEGGGHHHHHHHHHHTTCTTEEEEEEEESSSSEEEEE
T ss_pred EccccchhhhhhhhhhhhhccCCCCCEEEEEcHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCEEEec
Confidence 9999999999887999999999999999999999999999999999996 99999999999998764
No 32
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.18 E-value=3e-11 Score=127.59 Aligned_cols=92 Identities=37% Similarity=0.433 Sum_probs=81.4
Q ss_pred eeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCC-ChHHHHHHHHHHHHHHHHcC
Q psy2354 647 LRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG-EGAALFDACQAMCDIMGEFG 725 (749)
Q Consensus 647 ~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~-~~~~l~~a~~gl~d~~~~lg 725 (749)
..+.++|.|.+|+++.+|||++|+.||.++++|++++|+.|+ .+.++++|+|+. +++ +.+.+.++++||.++|+++|
T Consensus 12 ~~~~~~t~d~~~~~~~~~p~~~g~~av~~~~sDiaa~Ga~P~-~~~~~l~~~~~~-~~~~~~~~l~~~~~g~~~~~~~~g 89 (264)
T cd02204 12 DKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPL-AITDCLNFGNPE-KPEGEMGQLVEAVLGLGDACRALG 89 (264)
T ss_pred CeEEEEEcCCCCceeeeCHHHHHHHHHHHHHHHHhhhCCchH-heeeceeccCCC-CCcchHHHHHHHHHHHHHHHHHhC
Confidence 457889999999999999999999999999999999999888 477889998873 333 45678899999999999999
Q ss_pred ccccccccCccceEe
Q psy2354 726 IAVDGGKDSLSMAAR 740 (749)
Q Consensus 726 ~PvvgGkdSls~~~~ 740 (749)
+|++||++|+|++..
T Consensus 90 v~ivGG~t~~~~~~~ 104 (264)
T cd02204 90 TPVIGGKDSLYNETE 104 (264)
T ss_pred CCcccceeCCccCCC
Confidence 999999999988764
No 33
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=99.00 E-value=7.6e-10 Score=132.80 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=93.9
Q ss_pred cccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC--CCceEEecccccCCCCcChhhhcccccc
Q psy2354 246 VQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQ 323 (749)
Q Consensus 246 VQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQ 323 (749)
+..-+++.++++++++..+. ..+.|.++||++.||+..++.||+.. +|++|+++++|. +++.+++.+|||
T Consensus 582 ~p~~~~~~~~~~~~~i~~l~----~~g~v~a~~DiSdGGL~~aL~ema~~s~~G~~I~l~~ip~----~~~~~~lfses~ 653 (715)
T TIGR01736 582 VPAVDLEEEKELADAVREAI----RAGLVSAAHDVSRGGLAVALAEMAAASGIGAEVDIDEIAS----ARPDELLFSESN 653 (715)
T ss_pred CCCCCHHHHHHHHHHHHHHH----HcCCeEEEEeCCcChHHHHHHHHHhCCCceEEEEcCCCcC----cchHHHHhCCCC
Confidence 34458899999977676655 45689999999999999999999974 899999999986 589999999999
Q ss_pred cccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEe
Q psy2354 324 ENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAE 365 (749)
Q Consensus 324 Er~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~ 365 (749)
.||++.|+|++. .++++++++++++||+ |+++++++.+
T Consensus 654 g~~v~~v~~~~~---~~~l~~~gi~~~vIG~-~~~~~l~i~~ 691 (715)
T TIGR01736 654 GRAIVAVPEEKA---EEAVKSKGVPAKVIGK-TGGDRLTIKT 691 (715)
T ss_pred ccEEEEECchHH---HHHHHHcCCCEEEEEE-ECCCeEEEEE
Confidence 999999999986 5666789999999999 8788898876
No 34
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=98.93 E-value=8.6e-10 Score=99.10 Aligned_cols=67 Identities=30% Similarity=0.408 Sum_probs=58.5
Q ss_pred ccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCcccccccc
Q psy2354 662 LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKD 733 (749)
Q Consensus 662 ~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkd 733 (749)
..|||.+|..||.++++|++++|+.|+. +.++++| +++.+++.|.+.++|+.++|+++|+|++||+.
T Consensus 30 ~~~p~~~g~~av~~~~sDl~a~Ga~P~~-~~~~l~~----~~~~~~~~l~~~~~Gi~~~~~~~g~~ivGG~T 96 (96)
T PF00586_consen 30 FMDPYDGGWKAVAEALSDLAAMGAKPLA-ILDSLGL----PNPESPEELKEIVKGIAEACREFGIPIVGGDT 96 (96)
T ss_dssp TCTHHHHHHHHHHHHHHHHHTTTEEEEE-EEEEEEE----STTSBHHHHHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCCeeeE-EEEEEEc----CCCCCHHHHHHHHHHHHHHHHHhCCcEeCcCC
Confidence 7899999999999999999999998886 4455555 56778889999999999999999999999974
No 35
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=98.80 E-value=2.7e-09 Score=115.89 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=73.0
Q ss_pred EeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCC-----------hHHHHHHHHHH
Q psy2354 649 GAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGE-----------GAALFDACQAM 717 (749)
Q Consensus 649 ~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~-----------~~~l~~a~~gl 717 (749)
..+++.+.++.++.+|||.+|+.+|++++||++|+|+.|+. +.++++| ++|+. .+.+.+.++|+
T Consensus 27 ~~~~~~e~~~~~~~~~p~~~g~~~v~~~vsDiaamGa~P~~-~~~~l~~----p~~~~~~~~~~~~~~~~~~l~~~~~Gi 101 (313)
T cd02203 27 AVVFKVETHNHPSAIEPFGGAATGVGGIIRDILSMGARPIA-LLDGLRF----GDLDIPGYEPKGKLSPRRILDGVVAGI 101 (313)
T ss_pred EEEEEeccCCCCCCcCCcccHhhhhhhhhhcccccCCEEEE-EeeEEee----cCCcccccccccccCHHHHHHHHHHHH
Confidence 47888999999999999999999999999999999998877 5455555 34443 35588899999
Q ss_pred HHHHHHcCccccccccCccce
Q psy2354 718 CDIMGEFGIAVDGGKDSLSMA 738 (749)
Q Consensus 718 ~d~~~~lg~PvvgGkdSls~~ 738 (749)
.++|++||+|++||++|++..
T Consensus 102 ~~~~~~~gv~lvGGdt~~~~~ 122 (313)
T cd02203 102 SDYGNCIGIPTVGGEVRFDPS 122 (313)
T ss_pred HHHHHHhCCceeeeEEEEECC
Confidence 999999999999999998754
No 36
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=98.75 E-value=7.7e-09 Score=106.57 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=72.3
Q ss_pred eeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCcccc
Q psy2354 650 AATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVD 729 (749)
Q Consensus 650 ~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~Pvv 729 (749)
.+++.|..+....+|||.+|+.+|.++++|++++|+.|+. .+++++|| ++.+++.+.+.++|+.++|+++|+|++
T Consensus 2 l~~~~D~~~~~~~~~p~~~g~~av~~~~sDl~a~Ga~P~~---~~~~l~~~--~~~~~~~~~~~~~Gi~~~~~~~gi~iv 76 (222)
T cd00396 2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIA---LLASLSLS--NGLEVDILEDVVDGVAEACNQLGVPIV 76 (222)
T ss_pred eEEEECCCCCCcCCCCccHHHHHHHHhHHHHHhcCCccHH---HhhheccC--CCCCHHHHHHHHHHHHHHHHHcCCeEe
Confidence 3566777777777999999999999999999999998865 45566564 556778899999999999999999999
Q ss_pred ccccCccceE
Q psy2354 730 GGKDSLSMAA 739 (749)
Q Consensus 730 gGkdSls~~~ 739 (749)
||++|++..+
T Consensus 77 gG~t~~~~~~ 86 (222)
T cd00396 77 GGHTSVSPGT 86 (222)
T ss_pred ceeeEEccCC
Confidence 9999998754
No 37
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=98.63 E-value=8.1e-08 Score=104.98 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=92.7
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCccccccccccccc--CCCceEEecccccCCCCcChhhhcccccccc
Q psy2354 248 RGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSISTLELWGAEYQEN 325 (749)
Q Consensus 248 ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr 325 (749)
..++++.+.. ++...++. ..+.+.++||..-||+..++.||+. .+|++|+++++|..+. +...+....+..|+
T Consensus 191 ~~~~~~~~~~---~~~~~~~~-~~~~v~a~~DiSdGGL~~~L~ema~~s~~G~~I~~~~iP~~~~-~~~~~~l~~~~g~~ 265 (323)
T TIGR03267 191 MKSPDYLRAQ---MDAVVEIA-ERKLVKAGKDISNPGLIGTLGMLLEASRVGAEVDLESIPKPED-VDMVTWLKMYPGSG 265 (323)
T ss_pred ccCHHHHHHH---HHHHHHHH-HhCCceEEEcCCCCcHHHHHHHHHhhcCCcEEEEcCcccCCCC-CCHHHHHHhCCCCC
Confidence 4456666655 55555554 5578999999999999999999986 4899999999997654 44444334667789
Q ss_pred cccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEec
Q psy2354 326 NALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAED 366 (749)
Q Consensus 326 ~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~ 366 (749)
|++.++|++.+.+.++.++++.++++||++|+++.+++.+.
T Consensus 266 ll~tv~~e~~~~~~~~~~~~g~~~~~IG~v~~~~~~~l~~~ 306 (323)
T TIGR03267 266 FVLTADPENVREIVRVLEDAGLTASVIGEVIEDGKLYVSDG 306 (323)
T ss_pred EEEEECchhHHHHHHHHHHcCCcEEEEEEEecCceEEEEEC
Confidence 99999999999999999999999999999998888887763
No 38
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=98.57 E-value=2.9e-08 Score=102.28 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=80.0
Q ss_pred HHHHHHhCCCCCCCEEEEcccCccccccccccccc--CCCceEEecccccCCCCcC-----hhhhcccccccccccccCc
Q psy2354 260 VIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSIS-----TLELWGAEYQENNALLCKP 332 (749)
Q Consensus 260 vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~ms-----~~eI~~sEsQEr~~l~v~~ 332 (749)
.+..+. +.+.|.++||++.||+..++.||+. ++|++++++++|..+.... +..++..++|.|+++.++|
T Consensus 125 ~~~~l~----~~~~v~a~~Dvs~GGl~~~l~ema~~s~~g~~i~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 200 (222)
T cd00396 125 AVLELV----AAGDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVEHIEEALLFNSSGGLLIAVPA 200 (222)
T ss_pred HHHHHH----HhCCeeEEEeCCCCcHHHHHHHHHHhcCCEEEEecccCcCcHHHHHHHHhcCcchhhhccCccEEEEECH
Confidence 344555 3457999999999999999999987 4899999999999887655 5678999999999999999
Q ss_pred ccHHHHHHHHhhcCCCeEEEEE
Q psy2354 333 LHCKTLRMISAREKCPVQFVGV 354 (749)
Q Consensus 333 ~~~~~~~~i~~re~~~~~vVG~ 354 (749)
++.+.|.++++++++++.+||+
T Consensus 201 ~~~~~~~~~~~~~g~~~~~IG~ 222 (222)
T cd00396 201 EEADAVLLLLNGNGIDAAVIGR 222 (222)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC
Confidence 9999999999999999999985
No 39
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=98.49 E-value=1.7e-07 Score=98.97 Aligned_cols=99 Identities=24% Similarity=0.202 Sum_probs=85.5
Q ss_pred ccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC--CCceEEecccccCCCCcChhhhccccc
Q psy2354 245 AVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEY 322 (749)
Q Consensus 245 aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEs 322 (749)
.++..++...+++.+.+.... ..+.|.++||+.-||+..++.||+.. +|++|+++++|..+ +.|.+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~l~----~~~~i~a~~DiSdGGL~~~l~ema~~s~~G~~i~~~~i~~~~------~~l~~e~ 233 (264)
T cd02204 164 APPLVDLEREKALFDAVQELI----KEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDLSKDDAED------ELLFSES 233 (264)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEeeccccHHHHHHHHHHhcCCceEEEEcCCCCccc------ceeecCC
Confidence 456778888788755444444 56789999999999999999999984 89999999999876 8899999
Q ss_pred ccccccccCcccHHHHHHHHhhcCCCeEEEEEE
Q psy2354 323 QENNALLCKPLHCKTLRMISAREKCPVQFVGVV 355 (749)
Q Consensus 323 QEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~ 355 (749)
|.+++++++|++.+.+. +++.++++++||++
T Consensus 234 ~g~ll~~~~~~~~~~~~--~~~~~i~~~~IG~v 264 (264)
T cd02204 234 LGRVLVEVKPENEEVFE--AEEAGVPATVIGTV 264 (264)
T ss_pred CCeEEEEEChhHHHHHH--HHhCCCCeEEeecC
Confidence 99999999999988887 88899999999985
No 40
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=98.46 E-value=2.4e-07 Score=101.25 Aligned_cols=111 Identities=12% Similarity=-0.019 Sum_probs=80.4
Q ss_pred ccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeecccceeeEeeeccCCC-CceeccChHHHHHHHHHHHhhhcccc
Q psy2354 605 HNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGAATSIGEQ-PIKGLVDPKRGARMAVAEALTNLVFA 683 (749)
Q Consensus 605 ~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~n-p~~~~ldPy~GA~~aV~Ea~rNlva~ 683 (749)
.|.-+||++ ++ +.+.+.-.|.+.+++++. .++ ...++.|.. +++...|||.+++.||+.++++++++
T Consensus 25 ~~~~~~~~~---~~---~~~~~~g~GdDaavi~~~----~~~--~lvistD~~~~~~~~~~p~~~G~~av~~nlsDiaam 92 (323)
T TIGR03267 25 VEILEPLDV---TY---EGNVIVDFGDDAAAIKIG----GDD--ILLLAADGIWGKLLDADPWWAGYCAVLVNVNDIAAM 92 (323)
T ss_pred HHHhccccc---cC---CCCeeeccCCceEEEEcC----CCC--EEEEEecCcCCcccccChhHhhHHhhhhhhhhHHhc
Confidence 334456775 22 233344456667777651 222 244444444 55677899999999999999999999
Q ss_pred cCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCc
Q psy2354 684 KISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSL 735 (749)
Q Consensus 684 ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSl 735 (749)
|+.|+. +.+++++ | +++.+.+.++||.++|+++|+|+|||+.+.
T Consensus 93 Ga~P~~-~~~~L~~------~-~~~~l~~~~~Gi~~a~~~~gi~ivGGdT~~ 136 (323)
T TIGR03267 93 GGKPVG-MVNVLSI------N-DVDVCREVLEGMREGAWKFGVPVVGGHTHP 136 (323)
T ss_pred CCEehh-HhhhhcC------C-CHHHHHHHHHHHHHHHHHcCCCEEccccCC
Confidence 998886 5666676 3 356688899999999999999999999876
No 41
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=98.46 E-value=3.4e-07 Score=98.30 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=68.4
Q ss_pred EeeeccCC-CCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCcc
Q psy2354 649 GAATSIGE-QPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIA 727 (749)
Q Consensus 649 ~~a~s~g~-np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~P 727 (749)
...+++|. +|.+...|||..++.||+.++++++|+|+.|+. +.+++++ |+ ++.+.+.++|+.++|+++|+|
T Consensus 47 ~lvit~D~~~~~~~~~~p~~~G~~av~~~vsDiaa~Ga~P~~-~~~~l~~------p~-~e~l~~i~~Gi~~a~~~~gi~ 118 (283)
T cd02192 47 YLLLAADGIWPSLVEADPWWAGYCSVLVNVSDIAAMGGRPLA-MVDALWS------PS-AEAAAQVLEGMRDAAEKFGVP 118 (283)
T ss_pred EEEEEecccccccccCCHHHHHHHHHHHHHHHHHhcCCEeee-eeeeecC------CC-HHHHHHHHHHHHHHHHHcCCc
Confidence 35566665 566777899999999999999999999998876 6566666 42 467889999999999999999
Q ss_pred ccccccCccc
Q psy2354 728 VDGGKDSLSM 737 (749)
Q Consensus 728 vvgGkdSls~ 737 (749)
++||+.++++
T Consensus 119 ivGGdt~~~~ 128 (283)
T cd02192 119 IVGGHTHPDS 128 (283)
T ss_pred EecccCCCCC
Confidence 9999999764
No 42
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=98.40 E-value=4.7e-07 Score=97.23 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=68.6
Q ss_pred EeeeccCCCCce----eccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHc
Q psy2354 649 GAATSIGEQPIK----GLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEF 724 (749)
Q Consensus 649 ~~a~s~g~np~~----~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~l 724 (749)
...+++|..+.. ..+|||..++.||+++++|++|+|+.|+. +.++++| +++.+.+.+.+.++||.++|+++
T Consensus 36 ~lv~t~D~~~~~~~f~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~-~~~~l~~----p~~~~~~~l~~i~~Gi~~a~~~~ 110 (291)
T cd02194 36 RLVVTTDTLVEGVHFPPDTTPEDIGWKALAVNLSDLAAMGARPLG-FLLSLGL----PPDTDEEWLEEFYRGLAEAADRY 110 (291)
T ss_pred eEEEEecccccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCccce-eEEEEEC----CCCCCHHHHHHHHHHHHHHHHHc
Confidence 345556655431 23599999999999999999999998887 6677777 44556778999999999999999
Q ss_pred CccccccccCccc
Q psy2354 725 GIAVDGGKDSLSM 737 (749)
Q Consensus 725 g~PvvgGkdSls~ 737 (749)
|+|++||+.+.+.
T Consensus 111 g~~liGGdt~~~~ 123 (291)
T cd02194 111 GVPLVGGDTTSGS 123 (291)
T ss_pred CCeEEcccCCCCC
Confidence 9999999998763
No 43
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=98.34 E-value=5.2e-07 Score=96.99 Aligned_cols=82 Identities=18% Similarity=0.080 Sum_probs=70.1
Q ss_pred EeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCC---ChHHHHHHHHHHHHHHHHcC
Q psy2354 649 GAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG---EGAALFDACQAMCDIMGEFG 725 (749)
Q Consensus 649 ~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~---~~~~l~~a~~gl~d~~~~lg 725 (749)
...+|+|.+|... .|||..++.||+.+++|++++|+.|+. +.+++|+ ++++ +.+.|.+.++|+.++|+++|
T Consensus 54 ~lv~stD~~~~~~-~~p~~~G~~av~~~~sDiaa~Ga~P~~-~~~~l~l----p~~~~~~~~~~l~~~~~Gi~~~~~~~g 127 (287)
T cd02195 54 ALVQTTDFFPPIV-DDPYLFGRIAAANALSDIYAMGAKPLS-ALAIVTL----PRKLPALQEEVLREILAGGKDKLREAG 127 (287)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHHHHHHHHHHHhcCchHHH-HHHHhcC----CCccchhhHHHHHHHHHHHHHHHHHcC
Confidence 4677788887755 799999999999999999999998877 6677777 3444 66779999999999999999
Q ss_pred ccccccccCcc
Q psy2354 726 IAVDGGKDSLS 736 (749)
Q Consensus 726 ~PvvgGkdSls 736 (749)
+|++||+.+.+
T Consensus 128 ~~ivGGdt~~~ 138 (287)
T cd02195 128 AVLVGGHTIEG 138 (287)
T ss_pred CcEEeeeeccC
Confidence 99999999854
No 44
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=98.31 E-value=8.7e-07 Score=96.49 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=63.6
Q ss_pred eeeccC--CCCcee---ccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHc
Q psy2354 650 AATSIG--EQPIKG---LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEF 724 (749)
Q Consensus 650 ~a~s~g--~np~~~---~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~l 724 (749)
.++++| .++.+. ..|||.+|+.||..+++|++|+|+.|+. +. ++++.| .+++. +.+.+.++||.++|+++
T Consensus 39 lvit~D~~~~~~~~~~~~~~p~~~g~~av~~~~sDi~a~Ga~P~~-~~--~~l~~p-~~~~~-~~l~~i~~Gi~~~~~~~ 113 (318)
T PRK05731 39 LVVSTDMLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAMGARPAA-FL--LALALP-KDLDE-AWLEALADGLFELADRY 113 (318)
T ss_pred EEEEecccccccCcCCCCCCHHHHHHHHHHHHHHHHHHcCCCcce-EE--EEEEcC-CCCCH-HHHHHHHHHHHHHHHHh
Confidence 444444 344444 7899999999999999999999999876 43 555444 22333 44889999999999999
Q ss_pred CccccccccCcc
Q psy2354 725 GIAVDGGKDSLS 736 (749)
Q Consensus 725 g~PvvgGkdSls 736 (749)
|+|++||+.+.+
T Consensus 114 g~~ivGG~t~~~ 125 (318)
T PRK05731 114 GAELIGGDTTRG 125 (318)
T ss_pred CCeEECcccCCC
Confidence 999999999855
No 45
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=98.25 E-value=1.5e-06 Score=94.75 Aligned_cols=84 Identities=14% Similarity=0.036 Sum_probs=65.6
Q ss_pred EeeeccCCC----CceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHc
Q psy2354 649 GAATSIGEQ----PIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEF 724 (749)
Q Consensus 649 ~~a~s~g~n----p~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~l 724 (749)
...+++|.. ..+..+|||.+++.+|..+++|++|+|+.|+. + +++++.| .+++ ...+.+.++|+.++|+++
T Consensus 37 ~lvis~D~~~~~~~~~~~~~p~~~G~~av~~~~sDiaa~Ga~P~~-~--~~~~~~P-~~~~-~~~l~~i~~Gi~~a~~~~ 111 (317)
T TIGR01379 37 DLVLTTDTLVEGVHFPPDTTPEDLGWKAVAVNLSDLAAMGATPKW-F--LLSLGLP-SDLD-EAWLEAFYDGLFECAKQY 111 (317)
T ss_pred eEEEEeccccCCcCCCCCCCHHHHHHHHHHHHHHHHHHcCCcccE-E--EEEEEcC-CCCC-HHHHHHHHHHHHHHHHHc
Confidence 355566643 34445699999999999999999999999886 3 3566554 2222 234888999999999999
Q ss_pred CccccccccCccc
Q psy2354 725 GIAVDGGKDSLSM 737 (749)
Q Consensus 725 g~PvvgGkdSls~ 737 (749)
|+|++||+.+++.
T Consensus 112 g~~ivGG~t~~~~ 124 (317)
T TIGR01379 112 GVPLVGGDTVSSP 124 (317)
T ss_pred CCeEECccCCCCC
Confidence 9999999999876
No 46
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=98.22 E-value=2.7e-06 Score=91.91 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=80.7
Q ss_pred cccCChHHHHHHH---HHHHHHHhCCCCCCCEEEEcccCccccccccccccc-CCCceEEecccccCC--------CCcC
Q psy2354 246 VQRGDPEMGQKLN---RVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVE-PVGAVVFTESFLLGD--------PSIS 313 (749)
Q Consensus 246 VQ~gnp~~e~~~q---~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~-~~G~~i~l~~v~~~~--------~~ms 313 (749)
++.+....++.+. +..+....+. ....|.++||+.-||+..++.||+. .+|++|+++++|+.+ ..++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v~a~~DiS~gGL~~~L~e~a~~~~g~~Id~~~iPv~~~~~~~~e~~~~~ 253 (297)
T cd02196 175 PGLGKTLGEELLTPTRIYVKPILPLL-EKVLVKGMAHITGGGLPENLPRVLPEGLGAVIDLGSWEIPPIFKWIQKAGNVS 253 (297)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHH-hcCCceEEEeCCCCchhhccHhhccCCceEEEecCCCCCCHHHHHHHHhCCCC
Confidence 3455555444332 2233333333 4567999999999999999999986 589999999998632 2344
Q ss_pred hhhhccc-ccccccccccCcccHHHHHHHHhhcCCCeEEEEEEe
Q psy2354 314 TLELWGA-EYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVT 356 (749)
Q Consensus 314 ~~eI~~s-EsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T 356 (749)
|.++|.. .++.||++.++|++.+.+.+++++.++++++||++|
T Consensus 254 p~~~~~~~~~g~gll~~v~~~~~~~~~~~l~~~gi~a~~IG~v~ 297 (297)
T cd02196 254 EEEMYRTFNMGIGMVLIVSEEDADEVLEILEKLGEKAYVIGEVV 297 (297)
T ss_pred HHHHHHHHhCCCCEEEEECHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 4443322 245799999999999999999999999999999986
No 47
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=98.17 E-value=2e-06 Score=95.64 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=86.1
Q ss_pred CccccCChHHH--HHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC-CCceEEecccccCCCC--------c
Q psy2354 244 DAVQRGDPEMG--QKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP-VGAVVFTESFLLGDPS--------I 312 (749)
Q Consensus 244 ~aVQ~gnp~~e--~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~-~G~~i~l~~v~~~~~~--------m 312 (749)
.+||.|++.++ |.. ++.++++. +...|.++||.+.||+...+.||++. +|++|+.+++|..+-. +
T Consensus 254 ~~~~l~e~ll~pt~iy---v~~vl~l~-~~~~V~am~diTgGGl~~~L~e~~~~g~g~~Id~~~~pv~~~f~~i~~~g~i 329 (379)
T PLN02557 254 ASVTIGEALMAPTVIY---VKQVLDII-SKGGVKGIAHITGGGFTDNIPRVFPKGLGAKIRTGSWEVPPLFKWLQEAGNI 329 (379)
T ss_pred cCccHHHHhhcchHHH---HHHHHHHh-hcCCeEEEEcCCcchHhhhhHHHhcCCeeEEEeCCCCCCCHHHHHHHHhCCC
Confidence 37999999998 666 77777766 55679999999999999999999864 8999999999986543 4
Q ss_pred Chhhhccccccc-ccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEE
Q psy2354 313 STLELWGAEYQE-NNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIV 362 (749)
Q Consensus 313 s~~eI~~sEsQE-r~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~ 362 (749)
+|.|++=.=+-= .|+++|+|++.+.+.++ ...++.+||+++...+++
T Consensus 330 ~~~em~~tfN~GiGmv~~V~~~~a~~~l~~---~~~~a~~IG~V~~~~~v~ 377 (379)
T PLN02557 330 EDAEMRRTFNMGIGMVLVVSPEAADRILEE---GAYPAYRIGEVINGEGVV 377 (379)
T ss_pred CHHHHHHhcCCcccEEEEECHHHHHHHHHh---cCCCeEEEEEEEcCCceE
Confidence 555543000112 58999999998887776 347899999999655543
No 48
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=98.01 E-value=4.6e-06 Score=90.09 Aligned_cols=81 Identities=10% Similarity=-0.036 Sum_probs=67.5
Q ss_pred eEeeeccCCCCceeccCh-----HHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHH
Q psy2354 648 RGAATSIGEQPIKGLVDP-----KRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMG 722 (749)
Q Consensus 648 ~~~a~s~g~np~~~~ldP-----y~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~ 722 (749)
+...+++|.-..+....| +.-|+.||+++++|++|+|+.|+. +.+++|| +++ +++.+++.++|+.++|+
T Consensus 20 ~~l~~~~D~~~~~~~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~~-~~~~l~~----~~~-~~~~l~~~~~Gi~~~~~ 93 (297)
T cd02196 20 PVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPLF-FLDYIAT----GKL-DPEVAAEIVKGIAEGCR 93 (297)
T ss_pred cEEEEecCCcchHHHHHHHcCCHhHHHHHHHHHhHHHHHHcCCEeHH-HHhhhhc----CCC-CHHHHHHHHHHHHHHHH
Confidence 346677777666666654 677999999999999999998887 5667777 445 66889999999999999
Q ss_pred HcCccccccccC
Q psy2354 723 EFGIAVDGGKDS 734 (749)
Q Consensus 723 ~lg~PvvgGkdS 734 (749)
++|+|++||+.+
T Consensus 94 ~~gi~ivGGdt~ 105 (297)
T cd02196 94 QAGCALLGGETA 105 (297)
T ss_pred HcCCeEeeecce
Confidence 999999999998
No 49
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=97.96 E-value=8.3e-06 Score=87.94 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCccce
Q psy2354 666 KRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSMA 738 (749)
Q Consensus 666 y~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~~ 738 (749)
+.-++.||+.+++|++|+|+.|+. +.+++|| |.+ ...+.+.+.++||.++|+++|+|++||+.|+|..
T Consensus 56 ~~iG~~av~~~~sDiaamGa~P~~-~~~~l~l--p~~--~~~~~l~~~~~Gi~~~~~~~g~~ivGGdt~~~~~ 123 (293)
T cd02197 56 GDIGKLAVCGTVNDLAMMGAKPLY-LSLGFIL--EEG--FPLEDLERIVKSMAEAAREAGVKIVTGDTKVVPK 123 (293)
T ss_pred hhHHHHHHHhhHHHHHHcCCcchh-heEEEEC--CCC--CCHHHHHHHHHHHHHHHHHcCCEEEeceeEeccC
Confidence 455999999999999999999887 6677777 311 1346788899999999999999999999998654
No 50
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=97.90 E-value=4.5e-06 Score=89.91 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=70.8
Q ss_pred CEEEEcccCccccccccccccc--CCCceEEecccccCCC--------CcChhhhcccccccccccccCcccHHHHHHHH
Q psy2354 273 PIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDP--------SISTLELWGAEYQENNALLCKPLHCKTLRMIS 342 (749)
Q Consensus 273 ~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~--------~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~ 342 (749)
.+.++||+.-||+..++.||+. .+|++|+++++|.... +++|+++..+ -++++.++|++.+.+.+++
T Consensus 209 ~~~a~~DiSdGGL~~~l~~la~~s~~g~~i~~~~iP~~~~~~~~~~~~~~~~~~~~~~---G~ll~~v~~~~~~~~~~~~ 285 (298)
T cd06061 209 GVTAMHDATEGGILGALWEVAEASGVGLRIEKDKIPIRQETKEICEALGIDPLRLISS---GTLLITVPPEKGDELVDAL 285 (298)
T ss_pred CeeEEEeCCccHHHHHHHHHHHHcCCeEEEEecccCcCHHHHHHHHHcCCCHHHhhcC---CcEEEEEChHHHHHHHHHH
Confidence 6899999999999999999987 4899999999998664 5677776544 5899999999999999999
Q ss_pred hhcCCCeEEEEEE
Q psy2354 343 AREKCPVQFVGVV 355 (749)
Q Consensus 343 ~re~~~~~vVG~~ 355 (749)
++.++++++||++
T Consensus 286 ~~~g~~~~~IG~v 298 (298)
T cd06061 286 EEAGIPASVIGKI 298 (298)
T ss_pred HHCCCCeEEEEeC
Confidence 9999999999985
No 51
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=97.88 E-value=1.3e-05 Score=86.27 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEcccCccccccccccccc--CCCceEEecccccCCCCcChhhhccccccccccc
Q psy2354 251 PEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSISTLELWGAEYQENNAL 328 (749)
Q Consensus 251 p~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l 328 (749)
+...++. ++...++. ..+.+.++||+.-||+..++.||+. .+|++|+++++|..+ .+...+....+.+.+|++
T Consensus 183 ~~~~~~~---~~~~~~l~-~~~~v~a~~DiSdGGL~~~L~ela~~sg~G~~Id~~~ip~~~-~~~~~~~l~~~~~~~ll~ 257 (283)
T cd02192 183 PALLRRQ---IALLPELA-ERGLVHAAKDISNPGIIGTLGMLLEASGVGAEIDLDAIPRPE-GVDLERWLKCFPGFGFLL 257 (283)
T ss_pred HHHHHHH---HHHHHHHH-HcCCCceeecCCCCcHHHHHHHHHHhcCCcEEEecccCCCCC-CCChHHHHHhCCCCceEE
Confidence 3344444 44444444 5567999999999999999999986 489999999999865 344344444567789999
Q ss_pred ccCcccHHHHHHHHhhcCCCeEEEEE
Q psy2354 329 LCKPLHCKTLRMISAREKCPVQFVGV 354 (749)
Q Consensus 329 ~v~~~~~~~~~~i~~re~~~~~vVG~ 354 (749)
.++|++.+.+.+.+++++.++++||+
T Consensus 258 ~v~~~~~~~v~~~l~~~gi~~~~IG~ 283 (283)
T cd02192 258 TARPENADEVVAVFAAVGITAAVIGE 283 (283)
T ss_pred EECHHhHHHHHHHHHHcCCcEEEeCC
Confidence 99999999999999999999999985
No 52
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=97.87 E-value=3.1e-05 Score=84.60 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=81.7
Q ss_pred CCEEEEcccCccccccccccccc--CCCceEEecccccCCC--------CcChhhhcccccccccccccCcccHHHHHHH
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDP--------SISTLELWGAEYQENNALLCKPLHCKTLRMI 341 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~--------~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i 341 (749)
..+.++||+.-||+..++.||+. .+|++|+++++|..+. +++|++. +++=++++.++|++.+.|.+.
T Consensus 196 ~~v~a~~DiSdgGL~~~L~ela~~s~~g~~I~~~~ipi~~~~~~~~~~~~~~~~~~---~~~G~ll~~v~~~~~~~~~~~ 272 (320)
T TIGR02124 196 PAVHAMRDATRGGLAAVLNEWAQASGVGIVIEEEKIPVKEEVKGACELLGLDPLYL---ANEGKLVLAVPPEAAEKVLEI 272 (320)
T ss_pred CCceEEECCCCccHHHHHHHHHHHcCCeEEEecccCCCCHHHHHHHHHhCCCHHHH---hcCCcEEEEECHHHHHHHHHH
Confidence 46899999999999999999986 4899999999997542 4556544 455589999999999999999
Q ss_pred Hhh--cCCCeEEEEEEeCCCC--EEEEeccccccCCCCCCCCcccccchh
Q psy2354 342 SAR--EKCPVQFVGVVTGSNK--IVLAEDKAKYYSNPSSPLQHPVDIQME 387 (749)
Q Consensus 342 ~~r--e~~~~~vVG~~T~~~~--l~~~~~~f~~~~~~~~~~~~~vdlp~~ 387 (749)
.++ .+.++++||++|+++. +++.... .+...+|.|..
T Consensus 273 ~~~~~~gi~~~~IG~v~~~~~~~v~~~~~~---------~~~~~l~~~~~ 313 (320)
T TIGR02124 273 LKSHPYGKDAAIIGEVVERKEGRVVLKTAY---------GGKRILDMPSG 313 (320)
T ss_pred HHhCCCCCCEEEEEEEEcCCCCEEEEEecC---------CCEEECCCCCC
Confidence 887 5899999999997655 7766311 34555666653
No 53
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=97.87 E-value=2e-05 Score=86.66 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=76.9
Q ss_pred CChHHHHHH---HHHHHHHHhCCCCCCCEEEEcccCccccccccccccc-CCCceEEecccccCCCCcChhhhcccccc-
Q psy2354 249 GDPEMGQKL---NRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVE-PVGAVVFTESFLLGDPSISTLELWGAEYQ- 323 (749)
Q Consensus 249 gnp~~e~~~---q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~-~~G~~i~l~~v~~~~~~ms~~eI~~sEsQ- 323 (749)
+++..++.+ .++++...++. ....|.++||+.-||+..++.||+. .+|++|+++++|+.+ ...+++|.+
T Consensus 211 ~~~l~~~~l~p~~~~~~~~~~l~-~~~~i~a~~DiS~gGL~~~L~e~~~sg~g~~I~~~~ipi~~-----~~~~~~e~~~ 284 (332)
T TIGR00878 211 GKTLGEELLEPTRIYVKPILELI-KEVEVHGLAHITGGGLLENIPRRLPDGLKAVIDMSSWPQPP-----IFKWIQEAGN 284 (332)
T ss_pred cchHHHHHhhHhHHHHHHHHHHH-hcCCceEEEeCCCccHhhhHHHhccCCceEEEecCCCCCCH-----HHHHHHHCCC
Confidence 345555433 22334444444 4456999999999999999999984 489999999987642 223333332
Q ss_pred -------------cccccccCcccHHHHHHHHhhcCCCeEEEEEEeC
Q psy2354 324 -------------ENNALLCKPLHCKTLRMISAREKCPVQFVGVVTG 357 (749)
Q Consensus 324 -------------Er~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~ 357 (749)
-||++.++|++.+.+.+++++.++++++||++|+
T Consensus 285 ~~~~e~~~~~~~g~glli~v~~e~~~~~~~~l~~~gi~a~vIG~V~~ 331 (332)
T TIGR00878 285 VEEEEMYRTFNMGVGFVVIVPEEEVDKALALLNARGEKAWVIGEVKK 331 (332)
T ss_pred CChHHHHHHHhccCCEEEEECHHHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 4799999999999999999999999999999984
No 54
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=97.83 E-value=3.5e-05 Score=84.21 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 665 PKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 665 Py~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
++..++.||+.++++++|+|+.|+. +.++++. |.+ ...+.+.+.++|+.++|+++|+|++||+.|++.
T Consensus 50 ~~~iG~~av~~n~sDiaamGa~P~~-~~~~l~l--p~~--~~~~~l~~~~~Gi~~a~~~~gi~ivGGdt~~~~ 117 (320)
T TIGR02124 50 GGDIGKLAVCGTVNDVAVSGAKPLY-LSCGFIL--EEG--FPIEDLERIVKSMAEAARKAGVKIVTGDTKVVE 117 (320)
T ss_pred cccHHHHHHHHHHHHHHHcCCcchh-hEEEEEc--CCC--CCHHHHHHHHHHHHHHHHHcCCEEEeeeeEEcc
Confidence 3457999999999999999998887 5566665 322 235678899999999999999999999999865
No 55
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=97.74 E-value=2.5e-05 Score=75.41 Aligned_cols=71 Identities=30% Similarity=0.391 Sum_probs=57.9
Q ss_pred ccccCCccEEEEcCCCC---CCCcHHHHhhccccc-cEEEEccCCHHHHHHHHHHcCC-CeeEeeEeecCCCCcEEEEE
Q psy2354 397 MAFAGLSGMTVDIPSDV---TTSEVLELLFAEELG-WLLEVTNENEAFVLEQFKAANV-SCKKIGVCDAFGMNAKISVA 470 (749)
Q Consensus 397 MAfag~~G~~I~L~~~~---~~~~p~e~LfSEe~G-~VleV~~~~~~~v~~~~~~~gv-~~~~IG~vt~~~~~~~i~I~ 470 (749)
||.++++|++|+++... ....+.+.||+|++| +++.|++++.++++++++++|+ .+++||+|++ + +.++|.
T Consensus 76 m~~~s~~g~~i~~~~~p~~~~~~~~~~~l~~~~~g~~l~~v~~~~~~~~~~~~~~~g~~~~~~IG~V~~-~--~~~~v~ 151 (153)
T PF02769_consen 76 MAEASGVGAEIDLDKIPLSDELQSPLEMLFSESEGRLLVAVPPEDAEEFLAALKKAGIPNATVIGEVTE-G--PGLTVI 151 (153)
T ss_dssp HHHCTTEEEEEEGGGSHHHHHHHHHHHHHHHSSSTEEEEEEEGGGHHHHHHHHHHTTCTTEEEEEEEES-S--SSEEEE
T ss_pred HHHhCCcceEEccccchhhhhhhhhhhhhccCCCCCEEEEEcHHHHHHHHHHHHhCCCCCEEEEEEEEc-C--CCEEEe
Confidence 89999999999998310 001347899999995 8889999999999999999999 5999999998 6 545544
No 56
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=97.66 E-value=2.5e-05 Score=85.08 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=74.5
Q ss_pred CEEEEcccCccccccccccccc--CCCceEEecccccCC------CCcChhhhccccccc-ccccccCcccHHHHHHHHh
Q psy2354 273 PIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGD------PSISTLELWGAEYQE-NNALLCKPLHCKTLRMISA 343 (749)
Q Consensus 273 ~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~------~~ms~~eI~~sEsQE-r~~l~v~~~~~~~~~~i~~ 343 (749)
.+.++||.. +|+..++.||+. .+|++|+++++|... .+++|+++..+.-|| ++++.++|++.+.|.++++
T Consensus 205 ~v~a~~DiS-~GL~~~l~ema~~s~~g~~i~~~~ipi~~~~~~~~~~~~~~~~~~~~g~~~~ll~~v~~~~~~~~~~~l~ 283 (318)
T PRK05731 205 LASAAIDIS-DGLAADLGHIAEASGVGADIDLDALPISPALREAAEGEDALRWALSGGEDYELLFTFPPENRGALLAAAG 283 (318)
T ss_pred hchhheech-HhHHHHHHHHHHHCCCeEEEeHHhCCCCHHHHHHhcCCCHHHHHhcCCCceeEEEEECHHHHHHHHHHHH
Confidence 489999999 489999999996 489999999999753 346788888877777 5889999999999999999
Q ss_pred hcCCCeEEEEEEeCCC
Q psy2354 344 REKCPVQFVGVVTGSN 359 (749)
Q Consensus 344 re~~~~~vVG~~T~~~ 359 (749)
++++++++||++|+++
T Consensus 284 ~~g~~~~~IG~v~~~~ 299 (318)
T PRK05731 284 HLGVGVTIIGRVTEGE 299 (318)
T ss_pred hcCCCceEEEEEEcCc
Confidence 9999999999999766
No 57
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=97.64 E-value=3.2e-05 Score=84.25 Aligned_cols=88 Identities=24% Similarity=0.215 Sum_probs=73.8
Q ss_pred CEEEEcccCccccccccccccc--CCCceEEecccccCCC------CcChhhhccc--ccccccccccCcccHHHHHHHH
Q psy2354 273 PIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDP------SISTLELWGA--EYQENNALLCKPLHCKTLRMIS 342 (749)
Q Consensus 273 ~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~------~ms~~eI~~s--EsQEr~~l~v~~~~~~~~~~i~ 342 (749)
.+.++||+.- |+..++.||+. .+|++|+++++|+.+. +++|+++..+ |+++ +++.++|++.+.|++..
T Consensus 204 ~v~a~~DvS~-GL~~~l~ema~~sg~g~~i~~~~ipv~~~~~~~~~~~~~~~~~~~~ge~~~-ll~~v~~~~~~~~~~~~ 281 (317)
T TIGR01379 204 YANAAIDVSD-GLASDLGHIAEASGVGIVIDLDRLPLSSELAAWAEGKDPLEWALSGGEDYE-LVFTVPPERREALLDAA 281 (317)
T ss_pred hcceeEEchH-hHHHHHHHHHHHcCCcEEEehhcCCCCHHHHHHhcCCCHHHHHhcCCccee-EEEEeCHHHHHHHHhhc
Confidence 6899999985 79999999996 4899999999998755 6788888776 4444 99999999999999887
Q ss_pred hhcCCCeEEEEEEeCCCCEEEEe
Q psy2354 343 AREKCPVQFVGVVTGSNKIVLAE 365 (749)
Q Consensus 343 ~re~~~~~vVG~~T~~~~l~~~~ 365 (749)
++ ++++||++|+++++++.+
T Consensus 282 ~~---~~~~IG~v~~~~~~~~~~ 301 (317)
T TIGR01379 282 KG---PLTRIGRVTEGEGVVLLA 301 (317)
T ss_pred cC---CceEEEEEEcCCceEEEe
Confidence 66 999999999877765544
No 58
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=97.63 E-value=4.6e-05 Score=82.09 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 665 PKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 665 Py~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
||..+..+|+.++++++|+|+.|+. +..+++| +.+.+.+.+.+.++|+.++|+++|+|++||+.+.+.
T Consensus 56 ~~~iG~~av~~~~sDi~amGa~P~~-~~~~l~~----p~~~~~~~l~~~~~Gi~~~~~~~gi~ivGG~t~~~~ 123 (298)
T cd06061 56 GKDAGWLAVHIAANDIATSGARPRW-LLVTLLL----PPGTDEEELKAIMREINEAAKELGVSIVGGHTEVTP 123 (298)
T ss_pred CcceeeehhhhhHHHHHhcCCCCce-eEEEEEc----CCCCCHHHHHHHHHHHHHHHHHcCCeEEeeeeEEcC
Confidence 8999999999999999999998876 6677777 334466789999999999999999999999988654
No 59
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=97.59 E-value=5.7e-05 Score=81.29 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=66.8
Q ss_pred CCCEEEEcccCccccccccccccc--CCCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCC
Q psy2354 271 LNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCP 348 (749)
Q Consensus 271 ~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~ 348 (749)
.+.+.++||+.-||+..++.||++ .+|++|+++++|.. |++-++++.++|++.+.+.+++++.+.+
T Consensus 213 ~~~v~a~~DiS~gGL~~~L~~~a~~sg~g~~Id~~~ip~~------------~~~Ggll~~v~~e~~~~~~~~~~~~g~~ 280 (287)
T cd02195 213 KYGAHACTDVTGFGLLGHLLEMARASGVSAEIDLDKLPLL------------QTSGGLLAAVPPEDAAALLALLKAGGPP 280 (287)
T ss_pred hcCCeEeEecCCcHHHHHHHHHHhhcCCeEEEEeCCCceE------------eccCceEEEEcHHHHHHHHHHHHhCCCC
Confidence 456899999999999999999997 48999999999875 7788999999999999999999999999
Q ss_pred eEEEEEE
Q psy2354 349 VQFVGVV 355 (749)
Q Consensus 349 ~~vVG~~ 355 (749)
+++||++
T Consensus 281 ~~~IG~v 287 (287)
T cd02195 281 AAIIGEV 287 (287)
T ss_pred eEEEEEC
Confidence 9999985
No 60
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=6.1e-05 Score=81.61 Aligned_cols=148 Identities=17% Similarity=0.161 Sum_probs=106.6
Q ss_pred ccccccccccccccCCCCccCC---CCccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC--
Q psy2354 221 VQFVGVVTGSNKVQGDNAADLD---FDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP-- 295 (749)
Q Consensus 221 ~~r~G~gG~Ss~~~~~~~~~~~---~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~-- 295 (749)
|+-+|+||+|-++..... +++ -+.++.-+.++++++.-+.+++.. . |.++||-==||+.|++-||++.
T Consensus 170 tg~~g~hga~ila~~~~~-~l~~~l~sD~~~~~~~~~~~l~~~~~~~~~----~--vtAMhDaTrGGla~aLnEmA~aSg 242 (339)
T COG0309 170 TGTIGIHGASILAHRFGE-ELETELGSDCAPLAKLVKALLSVVGEALAA----A--VTAMHDATRGGLAGALNEMAEASG 242 (339)
T ss_pred cCChhHHHHHHHHHhcch-hhccchhhhHHHHHHHHHHHhhcchhhhhh----h--hhhccCCchhHHHHHHHHHHHHcC
Confidence 556788888555443321 121 223444455555555433333331 1 7789999999999999999985
Q ss_pred CCceEEecccccCCC--------CcChhhhcccccccccccccCcccHHHHHHHHhhcC-CCeEEEEEEeCCCC-EEEEe
Q psy2354 296 VGAVVFTESFLLGDP--------SISTLELWGAEYQENNALLCKPLHCKTLRMISAREK-CPVQFVGVVTGSNK-IVLAE 365 (749)
Q Consensus 296 ~G~~i~l~~v~~~~~--------~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~-~~~~vVG~~T~~~~-l~~~~ 365 (749)
+|.+|+-+++|+++. ++.|+++. || =.++++|+|++.+.+.++-++++ .++++||+++.+.+ ..+..
T Consensus 243 vgi~I~ee~Ipv~~eVr~vce~lGiDPl~~a-nE--G~lv~~V~~~~a~~~l~~L~~~~~~~A~iIGeV~~~~~~v~l~~ 319 (339)
T COG0309 243 VGISIEEEKIPVREEVRGVCELLGLDPLELA-NE--GKLVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVEEKGGVGLET 319 (339)
T ss_pred CeEEEeeccccccHHHHHHHHHhCCCHHHhh-cC--ceEEEEECHHHHHHHHHHHHhcCCccceeEEEEeccCCcEEEEe
Confidence 899999999999987 67888775 33 67899999999999999999999 79999999997744 55544
Q ss_pred ccccccCCCCCCCCcccccchh
Q psy2354 366 DKAKYYSNPSSPLQHPVDIQME 387 (749)
Q Consensus 366 ~~f~~~~~~~~~~~~~vdlp~~ 387 (749)
.. .++.+++.|..
T Consensus 320 ~~---------G~~r~l~~P~~ 332 (339)
T COG0309 320 AG---------GGKRILEPPEG 332 (339)
T ss_pred cC---------CceEecCCCCc
Confidence 22 34677777754
No 61
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=97.58 E-value=7.3e-05 Score=81.98 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=74.9
Q ss_pred HHHHhCCCCCCCEEEEcccCcccccccccccc-cCCCceEEecccccCCC--------CcChhhh--ccccccccccccc
Q psy2354 262 RACIELPNNLNPIESIHDQGAGGNGNVLKEIV-EPVGAVVFTESFLLGDP--------SISTLEL--WGAEYQENNALLC 330 (749)
Q Consensus 262 ~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~-~~~G~~i~l~~v~~~~~--------~ms~~eI--~~sEsQEr~~l~v 330 (749)
+....+. ....+.++||+.-||+..++.||+ ..+|++|+++++|..+. +++|.|. ..++. ..+++.+
T Consensus 225 ~~~~~l~-~~~~v~a~~DiSdgGL~~~L~eia~sgvg~~Id~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~G-~~Ll~tv 302 (327)
T PRK05385 225 KPVLALL-KEVDVKGMAHITGGGFIENLPRVLPEGLGAEIDKGSWPVPPIFKWLQKLGNVEEEEMYRTFNMG-IGMVLIV 302 (327)
T ss_pred HHHHHHH-hcCCceEEEeCCCchHhhhhHHhcCCCceEEEecCCCCCCHHHHHHHHcCCCCHHHHHHHHhcC-CcEEEEE
Confidence 3333333 445689999999999999999998 34899999999996543 4777776 55655 4699999
Q ss_pred CcccHHHHHHHHhhcCCCeEEEEEE
Q psy2354 331 KPLHCKTLRMISAREKCPVQFVGVV 355 (749)
Q Consensus 331 ~~~~~~~~~~i~~re~~~~~vVG~~ 355 (749)
+|++.+.+.+.+++.++++++||++
T Consensus 303 ~~~~~~~l~~~l~~~g~~~~~IG~v 327 (327)
T PRK05385 303 PPEDADAALALLEAAGEDAWVIGRV 327 (327)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEC
Confidence 9999999999999999999999985
No 62
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=97.57 E-value=6.3e-05 Score=82.73 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=56.5
Q ss_pred ChHH-HHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccC
Q psy2354 664 DPKR-GARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDS 734 (749)
Q Consensus 664 dPy~-GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdS 734 (749)
+|+. .+..||+-+++|++|+|+.|+. +.++++| ++|+ ++.+.+.++||.++|+++|+|++||++|
T Consensus 72 ~~~~~~G~~av~~n~sDiaa~Ga~P~~-~~~~l~~----~~~~-~~~~~~i~~Gi~~a~~~~g~~ivGG~t~ 137 (332)
T TIGR00878 72 NKHDTIGIDLVAMNVNDLLVQGAEPLF-FLDYLAV----GKLD-PEVASQIVKGIAEGCKQAGCALVGGETA 137 (332)
T ss_pred CchHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHhc----CCCC-HHHHHHHHHHHHHHHHHcCCEEEceeee
Confidence 4544 8999999999999999999988 4566676 5665 6788999999999999999999999999
No 63
>PRK00943 selenophosphate synthetase; Provisional
Probab=97.53 E-value=8.8e-05 Score=82.09 Aligned_cols=87 Identities=15% Similarity=0.022 Sum_probs=69.2
Q ss_pred CCCEEEEcccCccccccccccccc--CCCceEEecccccCCCCcChhhh-------------------cccccccc----
Q psy2354 271 LNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSISTLEL-------------------WGAEYQEN---- 325 (749)
Q Consensus 271 ~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~ms~~eI-------------------~~sEsQEr---- 325 (749)
...|.++||..-||+...+.||++ .+|++|+++++|+.+..-...+. -++++|++
T Consensus 219 ~~~v~a~~DiT~gGL~~~L~ela~~s~~g~~Id~d~iPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (347)
T PRK00943 219 LPGVHAMTDVTGFGLLGHLLEMCQGAGLTARVDYAAVPLLPGVEEYIAQGCVPGGTGRNFASYGHLIGELPDEQRALLCD 298 (347)
T ss_pred cCCCeEEEecCCchHHHHHHHHHHhcCCeEEEecccCCCChhHHHHHHcCCCCchhhhHHHHhhccccccCHHHHhhccC
Confidence 356899999999999999999996 48999999999987532111111 12233433
Q ss_pred ------cccccCcccHHHHHHHHhhcCCCeEEEEEEeC
Q psy2354 326 ------NALLCKPLHCKTLRMISAREKCPVQFVGVVTG 357 (749)
Q Consensus 326 ------~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~ 357 (749)
+++.|+|++.+.+.+.+++.++++++||++|+
T Consensus 299 ~~~sgGll~~v~~~~a~~v~~~l~~~g~~a~vIG~V~~ 336 (347)
T PRK00943 299 PQTSGGLLVAVAPEAEAEVLAIAAEHGIELAAIGELVE 336 (347)
T ss_pred cccCccEEEEeCHHHHHHHHHHHHhcCCCeEEEEEEEc
Confidence 89999999999999999999999999999984
No 64
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=97.48 E-value=0.00011 Score=77.74 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC--CCceEEecccccCCCCcChhhhccccccc-ccccccCc
Q psy2354 256 KLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQE-NNALLCKP 332 (749)
Q Consensus 256 ~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQE-r~~l~v~~ 332 (749)
++|.-++...+.- + ++.+.+|+--||+--.+.+|.++ +|+.++|+++|.-.. --+.=|+--|== -|++.++|
T Consensus 194 ~~~~~~e~l~e~a-~--l~~AgKDvS~gG~iGtl~mlle~S~~ga~vdl~siP~p~~--vd~~~wlk~ypg~gfv~~v~p 268 (324)
T COG2144 194 KFRAQLELLREGA-K--LVKAGKDVSNGGLLGTLLMLLEKSRVGAGVDLDSIPYPAD--VDFRQWLKRYPGSGFVLTVDP 268 (324)
T ss_pred HHHHHHHHHHHHH-H--HHhhcccccCccHHHHHHHHHHhhccCceeeecccCCccc--ccHHHHHHhCCCCcEEEEeCH
Confidence 4444455555543 3 78999999999998899999987 599999999996541 223344444433 58999999
Q ss_pred ccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccccCCCCCCCCcccccchhhhhc
Q psy2354 333 LHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICG 391 (749)
Q Consensus 333 ~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~~~~~~~~~~~~vdlp~~~l~~ 391 (749)
++.+...++|+.++||++++|+++.+..|.+...+ ......|+..+.++|
T Consensus 269 e~veev~~v~~~~g~~a~~~GeVie~~~L~i~~~~---------~~~~~~d~e~~~i~g 318 (324)
T COG2144 269 EDVEEVVDVFEEEGCPATVIGEVIEEPVLRIGDGE---------LVSEVFDLEKERITG 318 (324)
T ss_pred HHHHHHHHHHHHcCCceEEEEEeccCceEEEecCc---------hhhhhhhhhhccccC
Confidence 99999999999999999999999999999998865 334455666555554
No 65
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=97.38 E-value=0.00019 Score=77.40 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=74.8
Q ss_pred HHHHHHHHHhCCCCCCCEEEEcccCccccccccccccc--CCCceEEecccccCCC--------CcChhhhccccccccc
Q psy2354 257 LNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDP--------SISTLELWGAEYQENN 326 (749)
Q Consensus 257 ~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~--------~ms~~eI~~sEsQEr~ 326 (749)
..++.+..... ...+.++||+.-||+..++.||+. .+|++|+++++|+.+. +++|+++ +++-++
T Consensus 189 ~~~~~~~~~~~---~~~v~a~~DiSdgGL~~~L~~~a~~sg~g~~I~~~~iP~~~~~~~~~~~~~~~~~~~---~~~G~l 262 (293)
T cd02197 189 LNGLVEALLEA---GPGIHAMRDPTRGGLAAVLNEIARASGVGIEIEEEAIPVREEVRGACEMLGLDPLYL---ANEGKF 262 (293)
T ss_pred hhHHHHHHHhc---CCCceEEEcCCcchHHHHHHHHHHHcCCeEEEeeccCCCCHHHHHHHHHhCcCHHHH---hcCCcE
Confidence 33445555542 246899999999999999999987 4899999999998654 3456553 344579
Q ss_pred ccccCcccHHHHHHHHhhc--CCCeEEEEEE
Q psy2354 327 ALLCKPLHCKTLRMISARE--KCPVQFVGVV 355 (749)
Q Consensus 327 ~l~v~~~~~~~~~~i~~re--~~~~~vVG~~ 355 (749)
++.++|++.+.+.++.++. ++++++||++
T Consensus 263 l~tv~~~~~~~i~~~l~~~~~gi~~~vIG~v 293 (293)
T cd02197 263 VAIVPPEDAEEVLEALRSHPLGKEAAIIGEV 293 (293)
T ss_pred EEEECHHHHHHHHHHHHhCCCCCCeEEEEeC
Confidence 9999999999999999988 9999999985
No 66
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=97.27 E-value=0.00046 Score=76.42 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=75.0
Q ss_pred CCCEEEEcccCcccccccccccccC--CCceEEecccc--cC--------CCCcChhhhcccccccccccccCcccHHHH
Q psy2354 271 LNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFL--LG--------DPSISTLELWGAEYQENNALLCKPLHCKTL 338 (749)
Q Consensus 271 ~~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~--~~--------~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~ 338 (749)
...+.++||..-||+..++.||++. +|++|+++++| +. .-+++|+.+ +++.+++.++|++.+.+
T Consensus 211 ~~~v~am~DiSdGGL~~~L~ela~aSgvg~~Id~~~IP~pl~~~v~~~~~~~~~~p~~~----~~~~LL~tv~~~~~~~v 286 (346)
T cd02691 211 VSKVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRSLINPKVLKMLEELGIDPLGV----SLDSLMIIAPEEDAVDI 286 (346)
T ss_pred CCCeEEEEcCCCchHHHHHHHHHHHcCCEEEEEhhhCccccCHHHHHHHHHcCCChhHc----ccCcEEEEEChHHHHHH
Confidence 3568999999999999999999964 89999999998 32 223556543 44579999999999999
Q ss_pred HHHHhhcCCCeEEEEEEeCCCCEEEEe
Q psy2354 339 RMISAREKCPVQFVGVVTGSNKIVLAE 365 (749)
Q Consensus 339 ~~i~~re~~~~~vVG~~T~~~~l~~~~ 365 (749)
.+..++.+.++++||++|..+++++..
T Consensus 287 ~~~l~~~g~~~~vIG~V~~~~~~~l~~ 313 (346)
T cd02691 287 IRTLREAGVRADEVGRVEEGRGVPLVV 313 (346)
T ss_pred HHHHHhcCCCeEEEEEEEeCCceEEEe
Confidence 998888899999999999877777744
No 67
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=97.16 E-value=0.0011 Score=58.03 Aligned_cols=61 Identities=7% Similarity=0.059 Sum_probs=49.2
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCc---cHHhhhhhe--eeecc
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHL---SRAIITKIV--LAEDK 138 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~---~~~~~~~~~--llhDr 138 (749)
-|+|+||||+.+|-...+.+.++.+|+++|+.+..++.|+|..+... ..++.+.++ +|+|.
T Consensus 4 ~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~~~l~~~~~~~~~a~~~v~~i~~~lL~Np 69 (80)
T TIGR00302 4 EVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGKVIELTIEADSEEAVEREVEEMCEKLLANP 69 (80)
T ss_pred EEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEEEcCCChhhHHHHHHHHHHHhcCCc
Confidence 48999999999999999999999999988999999999999764332 123445555 66664
No 68
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.14 E-value=0.0012 Score=56.71 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=48.9
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCccHHhhhhhe--eeecc
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSRAIITKIV--LAEDK 138 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~~~~~~~~--llhDr 138 (749)
.|||+||||+.+|-...+.+.++.+|+++|+.+..++.|+|.. .+.++.+.++ +|+|.
T Consensus 4 ~v~V~~k~gv~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~~~l~~---~~~~~~~~i~~~lL~Np 63 (73)
T PRK06423 4 KVEVTYKPGVEDPEALTILKNLNILGYNGIKGVSISKVYYFDA---DSYNEVDEIAGKILTNP 63 (73)
T ss_pred EEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEec---CCHHHHHHHHHHhcCCc
Confidence 5899999999999999999999999998899999999999965 3335556666 66665
No 69
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=97.07 E-value=0.0005 Score=75.43 Aligned_cols=65 Identities=12% Similarity=-0.000 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccC
Q psy2354 664 DPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDS 734 (749)
Q Consensus 664 dPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdS 734 (749)
+|+.-+..||+.++++++|+|+.|.. +.+++++ ++++ ++.+.+-++|+.++|+++|+|++||+.+
T Consensus 73 ~~~~iG~~av~~n~sDIaamGa~P~~-~~~~l~~----~~~~-~~~~~~~~~Gi~~~~~~~g~~ivGGdt~ 137 (327)
T PRK05385 73 KHDTIGIDLVAMCVNDLLVQGAEPLF-FLDYIAT----GKLD-PEVAAQVVKGIAEGCEQAGCALIGGETA 137 (327)
T ss_pred CHhhHHHHHHHHHHHHHHHcCCCHHH-HHHHHhc----CCCC-HHHHHHHHHHHHHHHHHcCCeEeCccce
Confidence 46889999999999999999998887 4466666 3453 5778889999999999999999999985
No 70
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=97.05 E-value=0.0015 Score=57.18 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=49.7
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCC---ccHHhhhhhe--eeecc
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGH---LSRAIITKIV--LAEDK 138 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~---~~~~~~~~~~--llhDr 138 (749)
.|+|+||||+.+|-...+.+.++.+|+++|+.+..++.|+|....+ .+.++.+.++ +|+|.
T Consensus 4 ~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k~~~l~~~~~~~~~a~~~v~~i~~~lL~Np 69 (80)
T PRK05974 4 KVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGKYFELELEGESEEKAEADLKEMCEKLLANP 69 (80)
T ss_pred EEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEEEcCCchhhhHHHHHHHHHHhcCCc
Confidence 4899999999999999999999999998899999999999986432 2234455566 66664
No 71
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.94 E-value=0.00089 Score=67.29 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=44.7
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechhhhhhc----cCccccCcCCcCcccccccccccCCCcceeeeEE
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL----LGWFSVSTQDKNNLVTDVMLSHNNSERFECRYST 617 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~----~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~ 617 (749)
..+.+..+.+.+.+|.+ ++.++|||+|+|+|++ +||++ .+..||..+|+.++|..
T Consensus 55 ~ll~~~~l~~~Ik~~~~--~kpilGICaG~qlL~~~s~~Lg~id------------g~V~Rn~~Grq~~sf~~ 113 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS--SKPVFGTCAGSIILSKGEGYLNLLD------------LEVQRNAYGRQVDSFVA 113 (179)
T ss_pred HHhhhcCcHHHHHHHHc--CCcEEEEcHHHHHHHccCCCCCCcc------------EEEEEcCCCCccceeee
Confidence 55666678999999874 6899999999999997 34444 37999999999988865
No 72
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=96.47 E-value=0.0046 Score=68.51 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=62.8
Q ss_pred EeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCC--ChHHHHHHHHHHHHHHHHcCc
Q psy2354 649 GAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG--EGAALFDACQAMCDIMGEFGI 726 (749)
Q Consensus 649 ~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~--~~~~l~~a~~gl~d~~~~lg~ 726 (749)
....++|..+. ...|||..++.||+.++.+++|+|+.|..-+. +. +++ |+ +.+.+.+-.+|+.++|+++|+
T Consensus 63 ~lv~ttD~~~p-~~~~p~~~G~~av~~~lsDiaamGa~P~~~l~-~~--~~~---~~~~~~~~l~~i~~Gi~~~~~~~g~ 135 (347)
T TIGR00476 63 SLVQTTDYITP-IVDDPYMMGRIAAANALSDIYAMGGTPIDAML-IL--LGV---SNKLTIEVMREVIQGFKDACREAGT 135 (347)
T ss_pred EEEEEeccCCC-CccCHHHHHHHHHHHHHHhhhhcCchHHHHHh-hc--cCC---CCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 45667777643 56799999999999999999999998876332 21 233 32 345688899999999999999
Q ss_pred cccccccCcc
Q psy2354 727 AVDGGKDSLS 736 (749)
Q Consensus 727 PvvgGkdSls 736 (749)
|++||...-+
T Consensus 136 ~lvGGdT~~~ 145 (347)
T TIGR00476 136 SLTGGHTILN 145 (347)
T ss_pred CeEeeeeecC
Confidence 9999987643
No 73
>PRK00943 selenophosphate synthetase; Provisional
Probab=96.05 E-value=0.015 Score=64.43 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=59.9
Q ss_pred eeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCcccc
Q psy2354 650 AATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVD 729 (749)
Q Consensus 650 ~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~Pvv 729 (749)
...+.|... ....|||.-++.||+-++..++|+|+.|+. .++.+++|.+. -+.+.+.+-++|+.++|+++|++++
T Consensus 63 lv~t~D~~~-p~~~~p~~~G~~Av~~~~sDiaAmGa~P~~---~l~~l~lp~~~-~~~~~l~~i~~Gi~~~~~~~gv~lv 137 (347)
T PRK00943 63 IISTTDFFM-PIVDDPFDFGRIAATNAISDIYAMGGKPIM---AIAILGWPINK-LPPEVAREVLEGGRAACRQAGIPLA 137 (347)
T ss_pred EEEEcccCC-CCCCCHHHHHHHHHHHHhhHhhccCccHHh---HhheeecCccc-CcHHHHHHHHHHHHHHHHHcCCcee
Confidence 444555441 244799999999999999999999998876 33455555111 2345688899999999999999999
Q ss_pred cccc
Q psy2354 730 GGKD 733 (749)
Q Consensus 730 gGkd 733 (749)
||.-
T Consensus 138 GGdT 141 (347)
T PRK00943 138 GGHS 141 (347)
T ss_pred cccc
Confidence 9965
No 74
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=96.04 E-value=0.011 Score=65.74 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=54.6
Q ss_pred ccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCC-ChHHHHHHHHHHHHHHHHcCccccccccCc
Q psy2354 662 LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG-EGAALFDACQAMCDIMGEFGIAVDGGKDSL 735 (749)
Q Consensus 662 ~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~-~~~~l~~a~~gl~d~~~~lg~PvvgGkdSl 735 (749)
..+||..+..||.-++++++|+|+.|+. +.+ +.++| ++ ..+.+.+-++|+.++|+++|+|++||.-+.
T Consensus 61 ~~~p~~~G~~av~~nvSDIaAmGa~P~~-~l~--sl~lp---~~~~~~~l~~i~~Gi~~a~~~~gv~lvGGdT~~ 129 (346)
T cd02691 61 SDFPFLAGFHATRAALRDVMVMGARPVA-LLS--DIHLA---DDGDVGKLFDFTAGVTAVSEATGVPLVAGSTLR 129 (346)
T ss_pred ccChHHHHHHHHHHHHHHHHHcCCchHH-hhe--eeecC---CCCCHHHHHHHHHHHHHHHHHcCCeEEeeeeEE
Confidence 3589999999999999999999998876 333 44344 22 235577799999999999999999998764
No 75
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=95.88 E-value=0.0058 Score=65.74 Aligned_cols=81 Identities=25% Similarity=0.241 Sum_probs=66.4
Q ss_pred CCEEEEcccCcccccccccccccC--CCceEEecccccCC------CCcChhhhccccccc-ccccccCcccHHHHHHHH
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGD------PSISTLELWGAEYQE-NNALLCKPLHCKTLRMIS 342 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~------~~ms~~eI~~sEsQE-r~~l~v~~~~~~~~~~i~ 342 (749)
+.+.++||+.- |+..++.||+.. +|++|+++++|... .+++|+++..+--+| .+++.++|++. .+..
T Consensus 202 ~~v~a~~DiSd-GL~~~l~ela~~s~~g~~i~~~~ipi~~~~~~~~~~~~p~~~~~~gGedy~ll~~v~~~~~---~~~~ 277 (291)
T cd02194 202 GLATAMIDISD-GLLADLGHIAEASGVGAVIDLDKLPLSPALRAAELGEDALELALSGGEDYELLFTVPPENA---EAAA 277 (291)
T ss_pred CCCeEEEEchH-hHHHHHHHHHHHcCCeEEEecccCCCCHHHHhhhcCCCHHHHHhcCCcceEEEEEechhHh---HHHH
Confidence 56999999986 699999999974 89999999999955 567899877766666 47778888765 5566
Q ss_pred hhcCCCeEEEEEEe
Q psy2354 343 AREKCPVQFVGVVT 356 (749)
Q Consensus 343 ~re~~~~~vVG~~T 356 (749)
+..+.++++||++|
T Consensus 278 ~~~~~~~~~IG~v~ 291 (291)
T cd02194 278 AKLGVPVTVIGRVT 291 (291)
T ss_pred hhcCCCceEEEEEC
Confidence 77889999999986
No 76
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=95.55 E-value=0.027 Score=49.46 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=38.4
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCC
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGH 123 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~ 123 (749)
.|+|.||+|+.||-...+.+..+.+|+++|+.+..|+.|.|....+
T Consensus 4 ~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK~~~l~~~~~ 49 (80)
T PF02700_consen 4 RVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGKYIELELEAD 49 (80)
T ss_dssp EEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEEEEEEEEE-S
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEEEEEEEEeCC
Confidence 4899999999999999999999999999999999999999987655
No 77
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=95.38 E-value=0.075 Score=57.30 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=73.9
Q ss_pred ccCChHHHHHHHHHHHHHHhCCCCCCCEEEEc-ccCcccccccccccccCCCceEEecccccCC----CCcChhh-----
Q psy2354 247 QRGDPEMGQKLNRVIRACIELPNNLNPIESIH-DQGAGGNGNVLKEIVEPVGAVVFTESFLLGD----PSISTLE----- 316 (749)
Q Consensus 247 Q~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~-D~GaGG~~na~~El~~~~G~~i~l~~v~~~~----~~ms~~e----- 316 (749)
.+.-+...+|+++++..-.++- +...|.+++ +.|-.=.==-+.||+++.|+++++++.|..= ...++-+
T Consensus 143 y~dS~~~~~~i~~aL~~f~~~~-~~~cis~~~r~~~~~sv~~~L~aL~~~~G~~l~lS~LP~~i~~~L~~~~~~~~~~~~ 221 (282)
T PF12818_consen 143 YRDSGLEQNKILQALQQFYSTL-ESPCISGSIRPPGPASVKEHLLALCHPGGARLDLSALPQEIVSQLKRSPPENREHNE 221 (282)
T ss_pred cccCHHHHHHHHHHHHHHHHhc-CCCcEEeecCCCCchhHHHHHHHhcCCCceEEEhhcCCHHHHHHhccCCchhHHHHH
Confidence 3344566778888888877766 667776653 6666555556778888999999999887421 0011111
Q ss_pred -----hcccccccccccccCccc-----------HHHHHHHHhhcCCCeEEEEEEeCCCCE
Q psy2354 317 -----LWGAEYQENNALLCKPLH-----------CKTLRMISAREKCPVQFVGVVTGSNKI 361 (749)
Q Consensus 317 -----I~~sEsQEr~~l~v~~~~-----------~~~~~~i~~re~~~~~vVG~~T~~~~l 361 (749)
-|.|-+=--+.|+|+.+. ++.++..|+..+||+.|+|+.+.+.+|
T Consensus 222 ~~i~~~FLNv~~~~vfl~V~n~~~~~~~~~~~~~l~~L~~~c~~~gc~~~iLG~t~~~~Gi 282 (282)
T PF12818_consen 222 EIIKQHFLNVYCSVVFLVVSNTPIDTNTDQGFGPLDALKRACRLCGCPVHILGRTCPEPGI 282 (282)
T ss_pred HHHHhhhhccccceEEEEEecCCCCCcccccccHHHHHHHHHHHCCCCEEEEeeeccCCCC
Confidence 122211112334444333 488999999999999999999977664
No 78
>PRK14105 selenophosphate synthetase; Provisional
Probab=95.04 E-value=0.023 Score=62.97 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=66.4
Q ss_pred CCEEEEcccCcccccccccccccCCCceEEecccccCCCCcChhhhcc-----cccc---cccccccCcccHHHHHHHHh
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVEPVGAVVFTESFLLGDPSISTLELWG-----AEYQ---ENNALLCKPLHCKTLRMISA 343 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~~~G~~i~l~~v~~~~~~ms~~eI~~-----sEsQ---Er~~l~v~~~~~~~~~~i~~ 343 (749)
+.+.++||+--||+...+.||++..|..++++++|..+......+.+- -|.- =-+++.++|++.+.+.+..+
T Consensus 235 ~~~~a~~DiSdgGL~~~L~ela~aS~v~i~i~~iPi~~~~~~~~~~~~~~l~~g~~~~ssGgLl~tv~~e~~~~~~~~l~ 314 (345)
T PRK14105 235 KIANAMTDVTGFGILGHSQEMAEQSNVEIEISTLPVIKGTPELSSLFGHALLDGYGAETAGGLLISVKPEYKDKLIDKLE 314 (345)
T ss_pred CCeeEEEcCCCchHHHHHHHHHhhCCCeEEEEccCCchhHHHHHHHhcccccCCCCCcccCeEEEEecHHHHHHHHHHHH
Confidence 468999999999999999999987666677779998664322111110 1111 12788999999999999999
Q ss_pred hcCCCeEEEEEEeCCC
Q psy2354 344 REKCPVQFVGVVTGSN 359 (749)
Q Consensus 344 re~~~~~vVG~~T~~~ 359 (749)
+.+.++++||++|.++
T Consensus 315 ~~g~~~~~IG~V~~~g 330 (345)
T PRK14105 315 KNNVYAFEVGKVVKNG 330 (345)
T ss_pred hCCCCceEEEEEEeCC
Confidence 9999999999998644
No 79
>PRK14105 selenophosphate synthetase; Provisional
Probab=94.97 E-value=0.042 Score=60.87 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=59.4
Q ss_pred eeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCC-ChHHHHHHHHHHHHHHHHcCccc
Q psy2354 650 AATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG-EGAALFDACQAMCDIMGEFGIAV 728 (749)
Q Consensus 650 ~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~-~~~~l~~a~~gl~d~~~~lg~Pv 728 (749)
...|.|.-+. ...|||.-+..|++-++.+|+|+|+.++..+..++.+ | ++ +.+.+.+-.+|+.++|+++|+|+
T Consensus 60 lv~t~D~f~~-~~~~p~~~G~~av~~nlSDiaAmGa~~p~~~~~~l~l--P---~~~~~~~l~~i~~Gi~~~~~~~gv~l 133 (345)
T PRK14105 60 IVKTVDVFTP-IVDDPYIQGKIAACNSTSDVYAMGLSEIIGVLVILGI--P---PELPIEVAKEMLQGFQDFCRENDTTI 133 (345)
T ss_pred EEEEecCCCC-CcCCHHHHHHHHHHHHHHHHHHcCCccHHHHHhhhcC--C---CCCCHHHHHHHHHHHHHHHHHhCCEE
Confidence 3445554332 3579999999999999999999998643334444444 3 22 24557789999999999999999
Q ss_pred cccccCc
Q psy2354 729 DGGKDSL 735 (749)
Q Consensus 729 vgGkdSl 735 (749)
+||.-..
T Consensus 134 vGGdT~~ 140 (345)
T PRK14105 134 IGGHTIL 140 (345)
T ss_pred Eeeeecc
Confidence 9998653
No 80
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=94.83 E-value=0.042 Score=58.73 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=57.3
Q ss_pred ccccCCccEEEEcCCC-C-CCCcHHHHhhcccc--ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEEC
Q psy2354 397 MAFAGLSGMTVDIPSD-V-TTSEVLELLFAEEL--GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVN 472 (749)
Q Consensus 397 MAfag~~G~~I~L~~~-~-~~~~p~e~LfSEe~--G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~ 472 (749)
|+-++++|..++|++. + .+.| +..|+-=-+ |.|+.|+|++++++.++|.+.|+++++||++.+ + +.++|.-+
T Consensus 227 lle~S~~ga~vdl~siP~p~~vd-~~~wlk~ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~GeVie-~--~~L~i~~~ 302 (324)
T COG2144 227 LLEKSRVGAGVDLDSIPYPADVD-FRQWLKRYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIE-E--PVLRIGDG 302 (324)
T ss_pred HHHhhccCceeeecccCCccccc-HHHHHHhCCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEEecc-C--ceEEEecC
Confidence 7778899999999862 1 1233 444444444 699999999999999999999999999999998 7 77887654
Q ss_pred C
Q psy2354 473 N 473 (749)
Q Consensus 473 g 473 (749)
.
T Consensus 303 ~ 303 (324)
T COG2144 303 E 303 (324)
T ss_pred c
Confidence 4
No 81
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.12 Score=56.52 Aligned_cols=82 Identities=22% Similarity=0.189 Sum_probs=61.2
Q ss_pred ccccCCccEEEEcCC---CC--------CCCcHHHHhhccccc-cEEEEccCCHHHHHHHHHHcC-CCeeEeeEeecCCC
Q psy2354 397 MAFAGLSGMTVDIPS---DV--------TTSEVLELLFAEELG-WLLEVTNENEAFVLEQFKAAN-VSCKKIGVCDAFGM 463 (749)
Q Consensus 397 MAfag~~G~~I~L~~---~~--------~~~~p~e~LfSEe~G-~VleV~~~~~~~v~~~~~~~g-v~~~~IG~vt~~~~ 463 (749)
||-+++.|+.|+-++ ++ =|+|||+. .| -| +|+.|++++.+++++++++++ .++.+||+|++ ..
T Consensus 237 mA~aSgvgi~I~ee~Ipv~~eVr~vce~lGiDPl~~-an--EG~lv~~V~~~~a~~~l~~L~~~~~~~A~iIGeV~~-~~ 312 (339)
T COG0309 237 MAEASGVGISIEEEKIPVREEVRGVCELLGLDPLEL-AN--EGKLVIAVPPEHAEEVLEALRSHGLKDAAIIGEVVE-EK 312 (339)
T ss_pred HHHHcCCeEEEeeccccccHHHHHHHHHhCCCHHHh-hc--CceEEEEECHHHHHHHHHHHHhcCCccceeEEEEec-cC
Confidence 999999999999875 11 16788864 33 35 889999999999999999999 89999999998 42
Q ss_pred CcEEEE-EECCEEEEEecHH
Q psy2354 464 NAKISV-AVNNEPVLNEDLG 482 (749)
Q Consensus 464 ~~~i~I-~~~g~~v~~~~~~ 482 (749)
.+.... .++++.+++.|..
T Consensus 313 ~~v~l~~~~G~~r~l~~P~~ 332 (339)
T COG0309 313 GGVGLETAGGGKRILEPPEG 332 (339)
T ss_pred CcEEEEecCCceEecCCCCc
Confidence 223333 3344666666654
No 82
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=93.05 E-value=0.22 Score=50.84 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.4
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
.+..+.+.+.++++ .++.+||||.|+|+|+..
T Consensus 62 ~~~~~~~~i~~~~~-~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 62 KREGILDEIKEKIE-EGLPILGTCAGLILLAKE 93 (200)
T ss_pred hhccHHHHHHHHHH-CCCeEEEECHHHHHHHhh
Confidence 44456777888774 578999999999999954
No 83
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=92.37 E-value=0.19 Score=51.62 Aligned_cols=63 Identities=21% Similarity=0.408 Sum_probs=42.4
Q ss_pred hCCCCeeEeeechhhhhhc-c-CccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeec
Q psy2354 565 ARSDTFSFGVCNGCQLMNL-L-GWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAH 642 (749)
Q Consensus 565 ~r~dtf~LGICnGcQ~L~~-~-~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaH 642 (749)
..+++.+||||.|.|+|+. + |-|. +|. .-|--|..|++.+.++.+++|+.....++|-+|
T Consensus 76 ~~p~~pvLGIC~G~Ql~A~~lGg~V~----------------~~~--~~E~G~~~v~~~~~~~~l~~gl~~~~~~v~~sH 137 (198)
T COG0518 76 GVPGKPVLGICLGHQLLAKALGGKVE----------------RGP--KREIGWTPVELTEGDDPLFAGLPDLFTTVFMSH 137 (198)
T ss_pred CCCCCCEEEEChhHHHHHHHhCCEEe----------------ccC--CCccceEEEEEecCccccccCCccccCccccch
Confidence 3466679999999999993 2 3333 111 146677788887544578888654333899999
Q ss_pred ccc
Q psy2354 643 GEV 645 (749)
Q Consensus 643 GeG 645 (749)
|+.
T Consensus 138 ~D~ 140 (198)
T COG0518 138 GDT 140 (198)
T ss_pred hCc
Confidence 863
No 84
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=92.20 E-value=0.2 Score=55.64 Aligned_cols=84 Identities=11% Similarity=-0.050 Sum_probs=63.2
Q ss_pred CCEEEEcccCccccccccccccc--CCCceEEecccccCCCCcChhhh----------ccccc-----------------
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSISTLEL----------WGAEY----------------- 322 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~ms~~eI----------~~sEs----------------- 322 (749)
..+.++||..-||+...+.||++ .+|++|+++++|..+......+. +.++-
T Consensus 231 ~~v~a~~DiT~gGL~~~L~~ia~~sg~g~~I~~~~iPi~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 310 (347)
T TIGR00476 231 FNAHAATDITGFGILGHAQNMAKNSNVEARIVIENLPVLAKMEELSKLCGNPFGLMHGTCPEGGGLLSCLPREKAALLCD 310 (347)
T ss_pred CCceEEEeccCccHHHHHHHHHhcCCCeEEEEeCCCCCchhHHHHHHcCCCChHHHhhhhhccCCcccCCCHHHHHHhcC
Confidence 46899999999999999999996 48999999999975432221111 11111
Q ss_pred -cc--ccccccCcccHHHHHHHHhhcCCCeEEEEEE
Q psy2354 323 -QE--NNALLCKPLHCKTLRMISAREKCPVQFVGVV 355 (749)
Q Consensus 323 -QE--r~~l~v~~~~~~~~~~i~~re~~~~~vVG~~ 355 (749)
|. =+++.++|+..+.+++.+++.+++...||++
T Consensus 311 ~~~~g~~l~~v~~~~~~~~~~~~~~~~~~~~~ig~v 346 (347)
T TIGR00476 311 PIKSGGYLFGVQAEIIGIVEKTATERIIDKPRIGEV 346 (347)
T ss_pred chhccCcccccCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 11 1357888888899999999999999999987
No 85
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=91.34 E-value=0.44 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.740 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
+.+++.+| ++++||||+|+|||...
T Consensus 57 l~~~i~~~----g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 57 LKKEILNF----DGYIIGICSGFQILSEK 81 (476)
T ss_pred HHHHHHHc----CCeEEEEcHHHHhcccc
Confidence 44555444 79999999999999954
No 86
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=89.99 E-value=0.31 Score=49.60 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhcc---------CccccCcCCcCcccccccccccC---CCcceeeeEEEEecC
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNLL---------GWFSVSTQDKNNLVTDVMLSHNN---SERFECRYSTVKIMK 622 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~---------~lIp~~~g~~~~~~p~~~~~~N~---s~rfEsr~~~V~I~~ 622 (749)
.+.+.+.++++ .++.+||||.|+|+|+.. |+++ .+..++. ...-|--|..+++.
T Consensus 60 ~~~~~i~~~~~-~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~------------~~v~~~~~~~~~~~~~G~~~v~~~- 125 (199)
T PRK13181 60 GLDEALKEHVE-KKQPVLGICLGMQLLFESSEEGNVKGLGLIP------------GDVKRFRSEPLKVPQMGWNSVKPL- 125 (199)
T ss_pred ChHHHHHHHHH-CCCCEEEECHhHHHhhhhcccCCcCCcceEE------------EEEEEcCCCCCCCCccCccccccC-
Confidence 45566777664 578999999999999963 2222 1222221 11235566667654
Q ss_pred CCcccccCCCCceeeEEeecc
Q psy2354 623 SPAIMLRNLENSVLGVWVAHG 643 (749)
Q Consensus 623 s~Sv~l~gm~Gsvlpi~vaHG 643 (749)
..+.+++++.. ...++-.|.
T Consensus 126 ~~~~lf~~l~~-~~~~~~~Hs 145 (199)
T PRK13181 126 KESPLFKGIEE-GSYFYFVHS 145 (199)
T ss_pred CCChhHcCCCC-CCEEEEeCe
Confidence 34677888753 355666675
No 87
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=89.71 E-value=0.34 Score=49.03 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=25.9
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
.+..+.+.+.++++ .++.+||||.|+|+|+..
T Consensus 55 ~~~~l~~~i~~~~~-~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 55 DKYGMFEPLRNFIL-SGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred HhccHHHHHHHHHH-cCCcEEEECHHHHHHHhh
Confidence 34457778888874 679999999999999954
No 88
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=89.44 E-value=0.72 Score=47.12 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhcc----CccccC---cCCcCcccccccccccCC-CcceeeeEEEEecCCCccc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNLL----GWFSVS---TQDKNNLVTDVMLSHNNS-ERFECRYSTVKIMKSPAIM 627 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~~----~lIp~~---~g~~~~~~p~~~~~~N~s-~rfEsr~~~V~I~~s~Sv~ 627 (749)
+.+.+.++.-..+..+||||.|+|+|+.. +..+.- .+. . .++..+.. .-.+-.|.+|++.. .+.+
T Consensus 61 ~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~----v--~~~~~~~~~~~~~~g~~~v~~~~-~~~l 133 (201)
T PRK13152 61 FIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGE----V--VKFEEDLNLKIPHMGWNELEILK-QSPL 133 (201)
T ss_pred cHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEE----E--EECCCCCCCcCCccCeEEEEECC-CChh
Confidence 45666666545679999999999999964 111100 011 0 01111111 11345678888753 4667
Q ss_pred ccCCCCceeeEEeecc
Q psy2354 628 LRNLENSVLGVWVAHG 643 (749)
Q Consensus 628 l~gm~Gsvlpi~vaHG 643 (749)
++++. ..+.++..|.
T Consensus 134 ~~~l~-~~~~~~~vHS 148 (201)
T PRK13152 134 YQGIP-EKSDFYFVHS 148 (201)
T ss_pred hhCCC-CCCeEEEEcc
Confidence 77764 2356666676
No 89
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=89.34 E-value=0.22 Score=50.59 Aligned_cols=31 Identities=16% Similarity=0.534 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 553 NEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 553 n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
+..+++++.++.+ .++.+||||+|+|+|++.
T Consensus 58 ~~~~~~~i~~~~~-~g~pvlgiC~G~qlL~~~ 88 (194)
T cd01750 58 KRGLAEAIKNYAR-AGGPVLGICGGYQMLGKY 88 (194)
T ss_pred HcCHHHHHHHHHH-CCCcEEEECHHHHHhhhh
Confidence 5568889999884 588999999999999854
No 90
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=89.27 E-value=0.38 Score=51.03 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=27.3
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
.+..+..+.+.+.+|.+ .++.+||||+|+|+|++.
T Consensus 54 ~L~~~~gl~~~I~~~v~-~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 54 KLAERHNLFPALREFVK-SGKPVWGTCAGLIFLAER 88 (248)
T ss_pred HHHhhcchHHHHHHHHH-cCCCEEEEChhHHHHHHH
Confidence 33344468888888874 688999999999999954
No 91
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=89.20 E-value=0.86 Score=51.29 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=52.2
Q ss_pred cChHH-HHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccC
Q psy2354 663 VDPKR-GARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDS 734 (749)
Q Consensus 663 ldPy~-GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdS 734 (749)
.+||. -+..+|+=+++.++++|+.|+.-+ +.+. + ++. +.+.+.+-++|+.++|+++|++++||...
T Consensus 116 ~~~~~~iG~~aVa~nvnDIaamGA~P~~~l---~~l~-~-~~l-~~~~l~~i~~Gi~~a~~~~Gv~lVGGdT~ 182 (379)
T PLN02557 116 TGIHDTIGIDLVAMSVNDIVTSGAKPLFFL---DYFA-T-SHL-DVDLAEKVIKGIVDGCQQSDCALLGGETA 182 (379)
T ss_pred cCcHhhHHHHHHHhHHHHHHHcCCChHHhh---eecc-c-CCC-CHHHHHHHHHHHHHHHHHhCCEEEeecce
Confidence 56775 799999999999999999998733 2232 2 222 33568889999999999999999999865
No 92
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=89.19 E-value=0.6 Score=51.20 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=52.7
Q ss_pred cChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHH-HHHHHHHHHHHHHHcCccccccccC
Q psy2354 663 VDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAA-LFDACQAMCDIMGEFGIAVDGGKDS 734 (749)
Q Consensus 663 ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~-l~~a~~gl~d~~~~lg~PvvgGkdS 734 (749)
+.|+..+..|++-++..|+|+|+.|.. ..+++.. | |+-+.. +..=++||.++|+.+++++|||-..
T Consensus 57 ~~p~d~G~Ka~a~NlSDlAAMGa~P~~-~~lsl~l--P---~~~d~~~~~~~~~Gi~e~~~~y~~~lIGGDt~ 123 (317)
T COG0611 57 MTPEDLGWKALAVNLSDLAAMGARPKA-FLLSLGL--P---PDLDEEWLEALADGIFEAAKKYGVKLIGGDTN 123 (317)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCchh-heeeeeC--C---CCCCHHHHHHHHHHHHHHHHHcCCeEeccccC
Confidence 449999999999999999999998877 4444444 3 355555 4458899999999999999999643
No 93
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=89.02 E-value=0.67 Score=47.35 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
.+++.+.++++ .++.+||||+|.|+|+..
T Consensus 59 ~~~~~i~~~~~-~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 59 PLRDVILEAAR-SGKPFLGICLGMQLLFES 87 (200)
T ss_pred HHHHHHHHHHH-cCCCEEEECHHHHHHhhh
Confidence 46777777775 578999999999999963
No 94
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=88.51 E-value=1.4 Score=44.03 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCC--CcccccCCC
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKS--PAIMLRNLE 632 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s--~Sv~l~gm~ 632 (749)
.+++.++.++++ +..++|||.|+|+|+.. .. | +..+|..+ +|..|..+.+... ...++++..
T Consensus 69 ~~~~~i~~~~~~-~~pilgiC~G~q~l~~~--lG---G---------~v~~~~~~-~~~g~~~v~~~~~~~~~~l~~~~~ 132 (188)
T cd01741 69 KLKELIRQALAA-GKPVLGICLGHQLLARA--LG---G---------KVGRNPKG-WEIGWFPVTLTEAGKADPLFAGLP 132 (188)
T ss_pred HHHHHHHHHHHC-CCCEEEECccHHHHHHH--hC---C---------EEecCCCc-ceeEEEEEEeccccccCchhhcCC
Confidence 355666666654 69999999999999843 11 1 23333332 4666777776532 233444443
Q ss_pred CceeeEEeecccc
Q psy2354 633 NSVLGVWVAHGEV 645 (749)
Q Consensus 633 Gsvlpi~vaHGeG 645 (749)
..+.++..|+..
T Consensus 133 -~~~~v~~~H~~~ 144 (188)
T cd01741 133 -DEFPVFHWHGDT 144 (188)
T ss_pred -CcceEEEEeccC
Confidence 346677778753
No 95
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=88.29 E-value=0.79 Score=46.98 Aligned_cols=59 Identities=17% Similarity=0.377 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhcc----------CccccCcCCcCcccccccccccCCCcceee--------eE
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNLL----------GWFSVSTQDKNNLVTDVMLSHNNSERFECR--------YS 616 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~----------~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr--------~~ 616 (749)
.+.+.+.+.... .+..||||.|.|+|... |||| |. ..||+.. |-
T Consensus 62 gl~~~i~~~~~~-~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~---G~--------------V~r~~~~~~kvPHMGWN 123 (204)
T COG0118 62 GLIEAIKEAVES-GKPFLGICLGMQLLFERSEEGGGVKGLGLIP---GK--------------VVRFPAEDLKVPHMGWN 123 (204)
T ss_pred chHHHHHHHHhc-CCCEEEEeHhHHhhhhcccccCCCCCcceec---ce--------------EEEcCCCCCCCCccccc
Confidence 445555554443 38999999999999842 3555 21 1223332 66
Q ss_pred EEEecCCCcccccCCC
Q psy2354 617 TVKIMKSPAIMLRNLE 632 (749)
Q Consensus 617 ~V~I~~s~Sv~l~gm~ 632 (749)
++.+. ..+.++.|++
T Consensus 124 ~l~~~-~~~~l~~gi~ 138 (204)
T COG0118 124 QVEFV-RGHPLFKGIP 138 (204)
T ss_pred eeecc-CCChhhcCCC
Confidence 67776 6778888886
No 96
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=87.82 E-value=1.9 Score=38.25 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=42.6
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCC
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGH 123 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~ 123 (749)
.|+|.+|+|+-+|-........+.+|.++|+-+..|..|.|.....
T Consensus 5 ~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK~~el~ld~~ 50 (83)
T COG1828 5 RVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGKVIELELDAE 50 (83)
T ss_pred EEEEEeCCcccCchhHHHHHHHHHcCCcccceeeeeeEEEEEecCc
Confidence 4899999999999999999999999998899999999999987653
No 97
>PRK05783 hypothetical protein; Provisional
Probab=87.52 E-value=2 Score=38.13 Aligned_cols=46 Identities=2% Similarity=-0.059 Sum_probs=42.0
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCC
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGH 123 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~ 123 (749)
-|.|.+|+|+.||-........+..|++.|+.+..|+.|.|....+
T Consensus 6 ~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvGK~iel~l~~~ 51 (84)
T PRK05783 6 ELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAGKYLVFKIEAN 51 (84)
T ss_pred EEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEeeEEEEEEEcCC
Confidence 3889999999999999999999999999999999999998987654
No 98
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=86.84 E-value=0.47 Score=49.08 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhcc---------CccccCcCCcCcccccccccccCC-CcceeeeEEEEecCC-
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNLL---------GWFSVSTQDKNNLVTDVMLSHNNS-ERFECRYSTVKIMKS- 623 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~---------~lIp~~~g~~~~~~p~~~~~~N~s-~rfEsr~~~V~I~~s- 623 (749)
.+.+.+.++++ .++.+||||.|+|+|+.. ++++ |. .- ++.+|.+ .-=+--|.+|++..+
T Consensus 62 gl~~~i~~~~~-~~~pvlGIClG~Qll~~~~~~~~~~glg~~~---G~----v~--~~~~~~~~~~p~~Gw~~v~~~~~~ 131 (210)
T CHL00188 62 GLITPIKKWIA-EGNPFIGICLGLHLLFETSEEGKEEGLGIYK---GQ----VK--RLKHSPVKVIPHMGWNRLECQNSE 131 (210)
T ss_pred CHHHHHHHHHH-cCCCEEEECHHHHHHhhccccCCcCCcccee---EE----EE--ECCCCCCCccCccCCccceecCCc
Confidence 45567778875 479999999999999853 2333 21 00 1211110 112235777776432
Q ss_pred ----CcccccCCCCceeeEEeeccc
Q psy2354 624 ----PAIMLRNLENSVLGVWVAHGE 644 (749)
Q Consensus 624 ----~Sv~l~gm~Gsvlpi~vaHGe 644 (749)
.+.+|+|.. ....++..|..
T Consensus 132 ~~~~~~~lf~~l~-~~~~v~~~HS~ 155 (210)
T CHL00188 132 CQNSEWVNWKAWP-LNPWAYFVHSY 155 (210)
T ss_pred ccccCChhhcCCC-CCCEEEEeCcc
Confidence 145777764 33667777874
No 99
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=86.79 E-value=0.53 Score=48.04 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=27.8
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
.+..+..+.+.+.+|.+ .++.++|||.|+|||+..
T Consensus 57 ~L~~~~~~~~~i~~~~~-~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 57 ELSANQSMRESIRAFAE-SGGPIYAECGGLMYLGES 91 (198)
T ss_pred HHHhhHHHHHHHHHHHH-cCCCEEEEcccHHHHHHH
Confidence 34455678888998875 578999999999999843
No 100
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=86.71 E-value=1.3 Score=52.12 Aligned_cols=32 Identities=34% Similarity=0.581 Sum_probs=25.2
Q ss_pred ccChhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 551 LLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 551 L~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
|.+..+.+.+.+|++ .+..+||||.|+|+|+.
T Consensus 63 L~~~gl~~~i~~~i~-~g~PvLGIC~G~QlLa~ 94 (538)
T PLN02617 63 LNNRGMAEALREYIQ-NDRPFLGICLGLQLLFE 94 (538)
T ss_pred HHHcCHHHHHHHHHH-cCCCEEEECHHHHHHhh
Confidence 333456777888875 67899999999999995
No 101
>PRK05665 amidotransferase; Provisional
Probab=86.24 E-value=1.8 Score=45.65 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc-c-CccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCC
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL-L-GWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLEN 633 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~-~-~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~G 633 (749)
+++-+++++++ +..+||||.|+|+|+. + |-|. +|.. .+|.-+..+.+... ..++.++ .
T Consensus 80 l~~~i~~~~~~-~~PilGIC~GhQlla~AlGG~V~----------------~~~~-G~e~G~~~~~~~~~-~~~~~~~-~ 139 (240)
T PRK05665 80 LKTYLLKLYER-GDKLLGVCFGHQLLALLLGGKAE----------------RASQ-GWGVGIHRYQLAAH-APWMSPA-V 139 (240)
T ss_pred HHHHHHHHHhc-CCCEEEEeHHHHHHHHHhCCEEE----------------eCCC-CcccceEEEEecCC-CccccCC-C
Confidence 45666666765 5789999999999983 2 3332 1111 13333334444332 2355554 2
Q ss_pred ceeeEEeeccc
Q psy2354 634 SVLGVWVAHGE 644 (749)
Q Consensus 634 svlpi~vaHGe 644 (749)
..+.++..|++
T Consensus 140 ~~~~~~~~H~D 150 (240)
T PRK05665 140 TELTLLISHQD 150 (240)
T ss_pred CceEEEEEcCC
Confidence 45777788875
No 102
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=85.97 E-value=0.78 Score=47.28 Aligned_cols=84 Identities=11% Similarity=0.111 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhccCccc-cCcCCcCcccccccccccC----C-CcceeeeEEEEecCCCccccc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS-VSTQDKNNLVTDVMLSHNN----S-ERFECRYSTVKIMKSPAIMLR 629 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp-~~~g~~~~~~p~~~~~~N~----s-~rfEsr~~~V~I~~s~Sv~l~ 629 (749)
+.+.+.++....+..+||||.|+|+|+..+.=. ...+- . .-..+..+|. . .-.|--|..|++.. ++.+++
T Consensus 65 ~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~gl--g-~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~-~~~lf~ 140 (209)
T PRK13146 65 LGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGL--G-LIPGEVVRFQPDGPALKVPHMGWNTVDQTR-DHPLFA 140 (209)
T ss_pred cHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCc--c-eEeEEEEEcCCCCCCCccCccChHHeeeCC-CChhcc
Confidence 445566666557899999999999999652100 00000 0 0011223331 0 11244566777654 455777
Q ss_pred CCCCceeeEEeeccc
Q psy2354 630 NLENSVLGVWVAHGE 644 (749)
Q Consensus 630 gm~Gsvlpi~vaHGe 644 (749)
++.. .+.++..|+.
T Consensus 141 ~~~~-~~~v~~~Hs~ 154 (209)
T PRK13146 141 GIPD-GARFYFVHSY 154 (209)
T ss_pred CCCC-CCEEEEEeEE
Confidence 7752 3567777863
No 103
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=85.49 E-value=1.7 Score=43.80 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=36.8
Q ss_pred CCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeecccc
Q psy2354 566 RSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEV 645 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeG 645 (749)
..+..+||||.|+|+|+.. ++ | ++.++.. .|-.|..+++.. .+.++.++. ..+.+...|+.+
T Consensus 68 ~~~~PilGIC~G~Qll~~~--lg---g---------~v~~~~~--~~~g~~~v~~~~-~~~l~~~~~-~~~~~~~~H~~~ 129 (188)
T TIGR00888 68 ELGVPVLGICYGMQLMAKQ--LG---G---------EVGRAEK--REYGKAELEILD-EDDLFRGLP-DESTVWMSHGDK 129 (188)
T ss_pred hCCCCEEEECHHHHHHHHh--cC---c---------eEecCCC--ccceeEEEEEec-CCHhhcCCC-CCcEEEeEccce
Confidence 3578999999999999842 11 1 1222222 133566676654 245667764 345566678765
No 104
>PRK09065 glutamine amidotransferase; Provisional
Probab=84.91 E-value=1.9 Score=45.39 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc-cC-ccccCcCCcCcccccccccccCCCcceeeeEEEEecC--CCcccccCC
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL-LG-WFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMK--SPAIMLRNL 631 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~-~~-lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~--s~Sv~l~gm 631 (749)
+++.+.++++ .+..+||||.|+|+|+. +| -| .+|.. ..|-.|..|.+.. ....++++.
T Consensus 77 ~~~~i~~~~~-~~~PvlGIC~G~Qlla~alGg~V----------------~~~~~-g~e~G~~~v~~~~~~~~~~l~~~~ 138 (237)
T PRK09065 77 TADWLRQAAA-AGMPLLGICYGHQLLAHALGGEV----------------GYNPA-GRESGTVTVELHPAAADDPLFAGL 138 (237)
T ss_pred HHHHHHHHHH-CCCCEEEEChhHHHHHHHcCCcc----------------ccCCC-CCccceEEEEEccccccChhhhcC
Confidence 4555556665 47999999999999983 22 22 11111 1334445555532 234567665
Q ss_pred CCceeeEEeeccc
Q psy2354 632 ENSVLGVWVAHGE 644 (749)
Q Consensus 632 ~Gsvlpi~vaHGe 644 (749)
. ..+.+...|+.
T Consensus 139 ~-~~~~v~~~H~d 150 (237)
T PRK09065 139 P-AQFPAHLTHLQ 150 (237)
T ss_pred C-ccCcEeeehhh
Confidence 3 34667777764
No 105
>PRK06490 glutamine amidotransferase; Provisional
Probab=84.33 E-value=2.6 Score=44.52 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+++.+.++++ .++.+||||.|+|+|+.
T Consensus 75 ~~~~i~~~~~-~~~PvLGIC~G~Qlla~ 101 (239)
T PRK06490 75 EIDWISVPLK-ENKPFLGICLGAQMLAR 101 (239)
T ss_pred HHHHHHHHHH-CCCCEEEECHhHHHHHH
Confidence 3455566665 46899999999999984
No 106
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=84.17 E-value=0.55 Score=48.58 Aligned_cols=29 Identities=28% Similarity=0.630 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 554 EGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 554 ~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.+.+.++++ .++.+||||+|+|+|+.
T Consensus 59 ~gl~~~i~~~~~-~~~pilGiC~G~Q~l~~ 87 (210)
T PRK14004 59 TGLRSTIDKHVE-SGKPLFGICIGFQILFE 87 (210)
T ss_pred cCcHHHHHHHHH-cCCCEEEECHhHHHHHH
Confidence 357788888885 67899999999999985
No 107
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=84.15 E-value=0.61 Score=47.64 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
+.+.+.+ +.++.+||||.|+|||+..
T Consensus 61 l~~~i~~---~~g~PvlGIClGmQlL~~~ 86 (192)
T PRK13142 61 LNAILAK---NTDKKMIGICLGMQLMYEH 86 (192)
T ss_pred cHHHHHH---hCCCeEEEECHHHHHHhhh
Confidence 3444444 4578999999999999954
No 108
>PLN02347 GMP synthetase
Probab=83.34 E-value=2 Score=50.56 Aligned_cols=68 Identities=16% Similarity=0.386 Sum_probs=40.9
Q ss_pred HHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCc-eeeE
Q psy2354 560 LNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENS-VLGV 638 (749)
Q Consensus 560 f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gs-vlpi 638 (749)
+.+++...+..+||||.|+|+|+.. .+ | ++.++. .-|--|..+++.. .+.+|.++... ...+
T Consensus 78 i~~~~~~~~iPILGIClG~QlLa~a--lG---G---------~V~~~~--~~e~G~~~v~i~~-~~~Lf~~l~~~~~~~v 140 (536)
T PLN02347 78 FFDYCRERGVPVLGICYGMQLIVQK--LG---G---------EVKPGE--KQEYGRMEIRVVC-GSQLFGDLPSGETQTV 140 (536)
T ss_pred HHHHHHhcCCcEEEECHHHHHHHHH--cC---C---------EEEecC--CcccceEEEEEcC-CChhhhcCCCCceEEE
Confidence 3334434578999999999999943 11 1 111111 1233455666643 45678887643 5788
Q ss_pred Eeeccc
Q psy2354 639 WVAHGE 644 (749)
Q Consensus 639 ~vaHGe 644 (749)
|.+|+.
T Consensus 141 ~~~Hsd 146 (536)
T PLN02347 141 WMSHGD 146 (536)
T ss_pred EEEEEE
Confidence 888974
No 109
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=83.34 E-value=2.2 Score=42.40 Aligned_cols=60 Identities=20% Similarity=0.437 Sum_probs=34.9
Q ss_pred CCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeeccc
Q psy2354 567 SDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGE 644 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGe 644 (749)
.+..+||||.|+|+|+.. +. + +..++.. -|-.|..+++.. .+.+++++..+ +.+...|+.
T Consensus 69 ~~~PilGIC~G~Qll~~~--~g---g---------~v~~~~~--~~~G~~~v~~~~-~~~l~~~~~~~-~~~~~~H~~ 128 (181)
T cd01742 69 LGVPVLGICYGMQLIAKA--LG---G---------KVERGDK--REYGKAEIEIDD-SSPLFEGLPDE-QTVWMSHGD 128 (181)
T ss_pred cCCCEEEEcHHHHHHHHh--cC---C---------eEEeCCC--CcceEEEEEecC-CChhhcCCCCc-eEEEcchhh
Confidence 478999999999999852 11 1 1222221 133455555433 45677777543 555566764
No 110
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=83.28 E-value=1.2 Score=44.73 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=24.2
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+..+.+.+.++++ .++.+||||.|.|+|++
T Consensus 54 ~~~~~~~~i~~~~~-~g~PvlGiC~G~qlL~~ 84 (183)
T cd01749 54 RRTGLLDPLREFIR-AGKPVFGTCAGLILLAK 84 (183)
T ss_pred HhCCHHHHHHHHHH-cCCeEEEECHHHHHHHH
Confidence 34456667777775 47999999999999994
No 111
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=82.25 E-value=1.1 Score=44.12 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=30.0
Q ss_pred HHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 546 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 546 wa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+..++.|..+++++.++.+ .++.++|+|.|+|+|..
T Consensus 21 ~~~~l~~~~~~~~~I~~~~~-~G~pi~aeCGG~~~Lg~ 57 (158)
T PF07685_consen 21 FALELSRNRGLKEAIREAAE-AGGPIYAECGGYQYLGE 57 (158)
T ss_pred HHHHHHHHhCHHHHHHHHHH-cCCcEEEEchHHHHHHH
Confidence 44555667788999999986 56899999999999983
No 112
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=81.91 E-value=1.2 Score=51.32 Aligned_cols=37 Identities=22% Similarity=0.482 Sum_probs=31.8
Q ss_pred HHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 546 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 546 wa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+++.++.|..+++++.+|.+ .++.++|+|+|+|+|++
T Consensus 300 ~~~~l~~~~~~~~~i~~~~~-~G~pv~g~CgG~~~L~~ 336 (449)
T TIGR00379 300 FAEELSQNQALRDSIKTFIH-QGLPIYGECGGLMYLSQ 336 (449)
T ss_pred HHHHHHhhhHHHHHHHHHHH-cCCCEEEEcHHHHHHHh
Confidence 66677778889999999996 56899999999999984
No 113
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=81.64 E-value=2 Score=43.86 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhcc----CccccCcCCcCcccccccccccC---C-CcceeeeEEEEecCCCcc
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNLL----GWFSVSTQDKNNLVTDVMLSHNN---S-ERFECRYSTVKIMKSPAI 626 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~----~lIp~~~g~~~~~~p~~~~~~N~---s-~rfEsr~~~V~I~~s~Sv 626 (749)
.+.+.+.++++ .++.+||||.|.|+|+.. +.++.-. . . +.+..++. . ..-|..|..+++.. .+.
T Consensus 60 ~~~~~i~~~~~-~~~pvlGIC~G~Qll~~~~~~~~~~~~lg-~----l-~g~v~~~~~~~~~~~~~~g~~~i~~~~-~~~ 131 (205)
T PRK13141 60 GLDEVIKEAVA-SGKPLLGICLGMQLLFESSEEFGETEGLG-L----L-PGRVRRFPPEEGLKVPHMGWNQLELKK-ESP 131 (205)
T ss_pred ChHHHHHHHHH-CCCcEEEECHHHHHhhhccccCCCCCccc-e----E-EEEEEEcCCCCCCcccEecCccceeCC-CCh
Confidence 45566667775 467999999999999964 2222100 0 0 01222222 0 12355666777654 667
Q ss_pred cccCCCCceeeEEeecc
Q psy2354 627 MLRNLENSVLGVWVAHG 643 (749)
Q Consensus 627 ~l~gm~Gsvlpi~vaHG 643 (749)
+++++... ..++..|.
T Consensus 132 l~~~l~~~-~~v~~~Hs 147 (205)
T PRK13141 132 LLKGIPDG-AYVYFVHS 147 (205)
T ss_pred hhhCCCCC-CEEEEECe
Confidence 78887422 34555674
No 114
>PRK00074 guaA GMP synthase; Reviewed
Probab=81.58 E-value=2.1 Score=50.23 Aligned_cols=61 Identities=20% Similarity=0.402 Sum_probs=37.7
Q ss_pred CCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeecccc
Q psy2354 567 SDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEV 645 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeG 645 (749)
.+..+||||.|+|+|+.. .. | ++.++.. -|--|..+.+.+ ++.+++++.. ...+|.+|++.
T Consensus 74 ~~~PvLGIC~G~QlLa~~--lG---G---------~V~~~~~--~e~G~~~i~i~~-~~~Lf~~l~~-~~~v~~~H~d~ 134 (511)
T PRK00074 74 LGVPVLGICYGMQLMAHQ--LG---G---------KVERAGK--REYGRAELEVDN-DSPLFKGLPE-EQDVWMSHGDK 134 (511)
T ss_pred CCCCEEEECHHHHHHHHH--hC---C---------eEEecCC--cccceEEEEEcC-CChhhhcCCC-ceEEEEECCeE
Confidence 478999999999999842 11 1 1112211 122355566643 4667888743 47889999863
No 115
>KOG3939|consensus
Probab=81.37 E-value=1.6 Score=45.82 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=48.7
Q ss_pred ccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccc
Q psy2354 662 LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGK 732 (749)
Q Consensus 662 ~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGk 732 (749)
--|||-+++.|-+..+..|.|+|++.-+.+--++.---....-|..-.+---++|..|++.+-|+|++||-
T Consensus 26 vddpy~mgriacanvlsdlyamgvtecdnmlmll~vs~~~~ekerd~v~pl~~~gfkdaa~e~gt~v~ggq 96 (312)
T KOG3939|consen 26 VDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLSVSTSMSEKERDVVIPLIIQGFKDAAEEAGTPVTGGQ 96 (312)
T ss_pred cCChHHhhHHHHHHHHHHHHHhcccccccchhhhhhhhhhhhhhhchhhHHHHHHhHHHHHhcCCceecCe
Confidence 36999999999999999999999765554432222200000111112233478999999999999999985
No 116
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=81.10 E-value=2.6 Score=42.85 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=41.2
Q ss_pred HHH-HHHHhCCCCeeEeeechhhhhhcc----------CccccCcCCcCcccccccccccC-CCcceeeeEEEEecCCCc
Q psy2354 558 TQL-NKFIARSDTFSFGVCNGCQLMNLL----------GWFSVSTQDKNNLVTDVMLSHNN-SERFECRYSTVKIMKSPA 625 (749)
Q Consensus 558 ~~f-~~f~~r~dtf~LGICnGcQ~L~~~----------~lIp~~~g~~~~~~p~~~~~~N~-s~rfEsr~~~V~I~~s~S 625 (749)
+.+ .++++ .++.+||||.|+|+|+.. |+++ + +..++. ...-|..|..+++.. .+
T Consensus 61 ~~l~~~~~~-~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~---~---------~v~~~~~~~~~~~g~~~~~~~~-~~ 126 (196)
T TIGR01855 61 DLFVELVVR-LGKPVLGICLGMQLLFERSEEGGGVPGLGLIK---G---------NVVKLEARKVPHMGWNEVHPVK-ES 126 (196)
T ss_pred HHHHHHHHh-CCCCEEEECHHHHHhhhccccCCCCCCcceee---E---------EEEECCCCCCCcccCeeeeeCC-CC
Confidence 344 45554 578999999999999965 1222 1 122221 022345566666543 34
Q ss_pred ccccCCCCceeeEEeeccc
Q psy2354 626 IMLRNLENSVLGVWVAHGE 644 (749)
Q Consensus 626 v~l~gm~Gsvlpi~vaHGe 644 (749)
.+++++. ..+.++..|++
T Consensus 127 ~l~~~l~-~~~~v~~~Hs~ 144 (196)
T TIGR01855 127 PLLNGID-EGAYFYFVHSY 144 (196)
T ss_pred hHHhCCC-CCCEEEEECee
Confidence 4677764 34567777864
No 117
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=80.32 E-value=3.9 Score=41.36 Aligned_cols=60 Identities=25% Similarity=0.220 Sum_probs=34.3
Q ss_pred CCCCeeEeeechhhhhhcc-CccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeeccc
Q psy2354 566 RSDTFSFGVCNGCQLMNLL-GWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGE 644 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~~~-~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGe 644 (749)
..+..+||||.|+|+|+.. | | ++.++.. ..+.+|..|+.. ++..+.++.+ .+.++..|+.
T Consensus 70 ~~~~PvLGIC~G~Qll~~~~G------G---------~v~~~~~-~~~g~~~~v~~~--~~~~~~~l~~-~~~v~~~H~~ 130 (188)
T TIGR00566 70 AGKLPILGVCLGHQAMGQAFG------G---------DVVRANT-VMHGKTSEIEHN--GAGIFRGLFN-PLTATRYHSL 130 (188)
T ss_pred ccCCCEEEECHHHHHHHHHcC------C---------EEeeCCC-ccccceEEEEEC--CCccccCCCC-CcEEEEcccc
Confidence 3578999999999999843 2 1 1222221 122345555543 2335666644 3667777864
No 118
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=78.49 E-value=1.9 Score=43.75 Aligned_cols=29 Identities=38% Similarity=0.589 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 554 EGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 554 ~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.+.++++++ .++.+||||.|+|+|+.
T Consensus 59 ~~~~~~i~~~~~-~g~PilGIC~G~QlL~~ 87 (189)
T PRK13525 59 FGLLEPLREFIA-SGLPVFGTCAGMILLAK 87 (189)
T ss_pred ccHHHHHHHHHH-CCCeEEEECHHHHHHHh
Confidence 345666777774 57899999999999995
No 119
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=78.46 E-value=1.9 Score=43.16 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCCeeEeeechhhhhh
Q psy2354 557 KTQLNKFIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 557 ~~~f~~f~~r~dtf~LGICnGcQ~L~ 582 (749)
.+.++.+++ .+..+||||.|+|+|+
T Consensus 62 ~~~i~~~~~-~~~PilGIC~G~Q~la 86 (192)
T PF00117_consen 62 IELIREARE-RKIPILGICLGHQILA 86 (192)
T ss_dssp HHHHHHHHH-TTSEEEEETHHHHHHH
T ss_pred ccccccccc-cceEEEEEeehhhhhH
Confidence 334444444 6899999999999999
No 120
>PLN02335 anthranilate synthase
Probab=78.14 E-value=2.8 Score=43.73 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.5
Q ss_pred CCCCeeEeeechhhhhhc
Q psy2354 566 RSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~~ 583 (749)
..+..+||||.|+|+|+.
T Consensus 89 ~~~~PiLGIClG~QlLa~ 106 (222)
T PLN02335 89 GPLVPLFGVCMGLQCIGE 106 (222)
T ss_pred CCCCCEEEecHHHHHHHH
Confidence 456899999999999983
No 121
>PRK00758 GMP synthase subunit A; Validated
Probab=77.31 E-value=1.4 Score=44.07 Aligned_cols=65 Identities=23% Similarity=0.482 Sum_probs=36.9
Q ss_pred HHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEee
Q psy2354 562 KFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVA 641 (749)
Q Consensus 562 ~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~va 641 (749)
+++.+.+..+||||.|+|+|+.. .. | ++.++... |-.|..+.+... +.+++++. ..+.+...
T Consensus 61 ~~l~~~~~PilGIC~G~Q~L~~a--~G---g---------~v~~~~~~--~~g~~~i~~~~~-~~l~~~~~-~~~~~~~~ 122 (184)
T PRK00758 61 EYLKELDVPILGICLGHQLIAKA--FG---G---------EVGRGEYG--EYALVEVEILDE-DDILKGLP-PEIRVWAS 122 (184)
T ss_pred HHHHhCCCCEEEEeHHHHHHHHh--cC---c---------EEecCCCc--eeeeEEEEEcCC-ChhhhCCC-CCcEEEee
Confidence 44445578999999999999843 11 1 12222221 234555665543 34566653 34566667
Q ss_pred ccc
Q psy2354 642 HGE 644 (749)
Q Consensus 642 HGe 644 (749)
|+.
T Consensus 123 H~~ 125 (184)
T PRK00758 123 HAD 125 (184)
T ss_pred hhh
Confidence 764
No 122
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=77.19 E-value=7.2 Score=42.96 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=56.6
Q ss_pred ccccCCccEEEEcCCCC----------CCCcHHHHhhc--cccccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCC
Q psy2354 397 MAFAGLSGMTVDIPSDV----------TTSEVLELLFA--EELGWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMN 464 (749)
Q Consensus 397 MAfag~~G~~I~L~~~~----------~~~~p~e~LfS--Ee~G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~ 464 (749)
||-+++||++|+.+..- ...+|+++.++ |.+-.|+-+++++.+.+..++++.+ ++.||+++. + +
T Consensus 220 i~~aS~vg~~I~~~~lp~~~~~~~~~~~~~~~~~~aL~gGEDyELvft~p~~~~~~~~~~~~~~~--~~~IG~v~~-~-~ 295 (317)
T COG0611 220 IARASGVGIVIDEDLLPLSDAVLEALDELGDPLEWALSGGEDYELVFTVPEENREALLDALRSLG--VTIIGRVTE-G-E 295 (317)
T ss_pred HHHHcCCeEEEEeccCCCcHHHHHHHhccCCHHHHHhccCCceEEEEEeCchhHHHHHHHHHhcC--ceEEEEEee-c-C
Confidence 77789999999976421 01256665443 4447999999999999999999999 999999995 3 1
Q ss_pred cEEEEEECCEE
Q psy2354 465 AKISVAVNNEP 475 (749)
Q Consensus 465 ~~i~I~~~g~~ 475 (749)
+ ..+..+|+.
T Consensus 296 g-~~~~~dgk~ 305 (317)
T COG0611 296 G-VVVLVDGKE 305 (317)
T ss_pred C-eEEEecCce
Confidence 4 777788876
No 123
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=76.71 E-value=1.6 Score=44.22 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHhCCCCeeEeeechhhhhhcc----CccccCcCCcCcccccccccccCCC----cceeeeEEEEecCCC
Q psy2354 553 NEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL----GWFSVSTQDKNNLVTDVMLSHNNSE----RFECRYSTVKIMKSP 624 (749)
Q Consensus 553 n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~----~lIp~~~g~~~~~~p~~~~~~N~s~----rfEsr~~~V~I~~s~ 624 (749)
.+.+.+.+.+++++ +..+||||.|+|+|+.. +.++.- + -. +.+..++... .-|--|..+.+.+ +
T Consensus 57 ~~~~~~~i~~~~~~-~~pilGiC~G~q~l~~~~~~g~~~~~l-g----~~-~g~v~~~~~~~~~~~~~~G~~~v~~~~-~ 128 (198)
T cd01748 57 ERGLIEALKEAIAS-GKPFLGICLGMQLLFESSEEGGGTKGL-G----LI-PGKVVRFPASEGLKVPHMGWNQLEITK-E 128 (198)
T ss_pred HcChHHHHHHHHHC-CCcEEEECHHHHHhccccccCCCCCCC-C----Cc-ceEEEECCCCCCceEEEeccceEEECC-C
Confidence 34466777777765 78999999999999965 111100 0 00 0122222211 1244566666643 4
Q ss_pred cccccCCCCceeeEEeeccc
Q psy2354 625 AIMLRNLENSVLGVWVAHGE 644 (749)
Q Consensus 625 Sv~l~gm~Gsvlpi~vaHGe 644 (749)
+.+|+++.. .+.++-.|+.
T Consensus 129 ~~lf~~l~~-~~~v~~~Hs~ 147 (198)
T cd01748 129 SPLFKGIPD-GSYFYFVHSY 147 (198)
T ss_pred ChhhhCCCC-CCeEEEEeEE
Confidence 567777753 3667777864
No 124
>KOG1622|consensus
Probab=76.40 E-value=1.9 Score=48.96 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=34.9
Q ss_pred CCeeEeeechhhhhhcc--CccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCC-ceeeEEeeccc
Q psy2354 568 DTFSFGVCNGCQLMNLL--GWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLEN-SVLGVWVAHGE 644 (749)
Q Consensus 568 dtf~LGICnGcQ~L~~~--~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~G-svlpi~vaHGe 644 (749)
...+||||-|+|+|.++ |-+-.+... ++ |.. ++.++.+ +-.|+++.+ ..+-+|++||.
T Consensus 88 ~vpvLGICYGmQ~i~~~~Gg~V~~~~~R--E~-----------G~~-----eI~v~~~-~~lF~~~~~~~~~~VlltHgd 148 (552)
T KOG1622|consen 88 GVPVLGICYGMQLINKLNGGTVVKGMVR--ED-----------GED-----EIEVDDS-VDLFSGLHKTEFMTVLLTHGD 148 (552)
T ss_pred CCcceeehhHHHHHHHHhCCcccccccc--CC-----------CCc-----eEEcCch-hhhhhhhcccceeeeeecccc
Confidence 36789999999999843 333321111 11 112 3555443 336888874 35679999984
No 125
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=76.25 E-value=12 Score=32.07 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=38.1
Q ss_pred CCCChHHH---HHHhhcC-CCCccEEEEEEEEEEecCCCCCHHHHHHHH-HhhcCccccc
Q psy2354 10 PGIGAGEK---TKKLKAV-PKVISDIESELCYNIEISRELTPVELDKLH-WILNSSFECR 64 (749)
Q Consensus 10 ~als~~~~---l~~i~~~-~~~v~sv~te~~y~V~~~~~l~~~~~~~L~-~LL~~~~~~~ 64 (749)
|+..+.+- .+.|+.. .+++.+|++.++|.++ + +++++.+.++ .||..|+.+.
T Consensus 11 ~gv~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~~~l~--~-~~~~~~~~i~~~lL~Npvie~ 67 (73)
T PRK06423 11 PGVEDPEALTILKNLNILGYNGIKGVSISKVYYFD--A-DSYNEVDEIAGKILTNPVIHS 67 (73)
T ss_pred CCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEe--c-CCHHHHHHHHHHhcCCceeeE
Confidence 45555433 5556553 3358899999999997 5 8899999997 7999987664
No 126
>PRK08250 glutamine amidotransferase; Provisional
Probab=76.14 E-value=7.3 Score=40.95 Aligned_cols=69 Identities=23% Similarity=0.338 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhcc--CccccCcCCcCcccccccccccCCCcceeeeEEEEecCC--CcccccCC
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNLL--GWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKS--PAIMLRNL 631 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~~--~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s--~Sv~l~gm 631 (749)
.++.+.++++ .++.+||||.|.|+|+.. |-| .+|.. .|--|..|++... ...++.++
T Consensus 73 ~~~~i~~~~~-~~~PvlGIC~G~Qlla~alGg~V----------------~~~~~--~e~G~~~v~lt~~g~~d~l~~~~ 133 (235)
T PRK08250 73 EQRLINQAIK-AGKAVIGVCLGAQLIGEALGAKY----------------EHSPE--KEIGYFPITLTEAGLKDPLLSHF 133 (235)
T ss_pred HHHHHHHHHH-cCCCEEEEChhHHHHHHHhCcee----------------ccCCC--CceeEEEEEEccccccCchhhcC
Confidence 3445556655 679999999999999832 222 22222 4666777766431 22355554
Q ss_pred CCceeeEEeeccc
Q psy2354 632 ENSVLGVWVAHGE 644 (749)
Q Consensus 632 ~Gsvlpi~vaHGe 644 (749)
. ..+.+...|++
T Consensus 134 ~-~~~~v~~~H~d 145 (235)
T PRK08250 134 G-STLTVGHWHND 145 (235)
T ss_pred C-CCcEEEEEecc
Confidence 3 34566666764
No 127
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=75.29 E-value=12 Score=32.79 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=41.9
Q ss_pred EEcCCCCCChHHH---HHHhhcC-CCCccEEEEEEEEEEecCC---CCCHHHHHHHH-HhhcCccccc
Q psy2354 5 RYYSKPGIGAGEK---TKKLKAV-PKVISDIESELCYNIEISR---ELTPVELDKLH-WILNSSFECR 64 (749)
Q Consensus 5 ~~~~~~als~~~~---l~~i~~~-~~~v~sv~te~~y~V~~~~---~l~~~~~~~L~-~LL~~~~~~~ 64 (749)
..|. |...+.+- .+.|+.. ..++.+|++.++|.++.++ +++.++.+.++ .||..|+.++
T Consensus 7 V~~k-~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k~~~l~~~~~~~~~a~~~v~~i~~~lL~Npvie~ 73 (80)
T PRK05974 7 VTLK-EGVLDPQGQAIKGALGSLGYDGVEDVRQGKYFELELEGESEEKAEADLKEMCEKLLANPVIED 73 (80)
T ss_pred EEEC-CCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEEEcCCchhhhHHHHHHHHHHhcCCceeeE
Confidence 3344 44444433 5566663 3358889999999998765 58888999998 7999987664
No 128
>PRK07567 glutamine amidotransferase; Provisional
Probab=70.29 E-value=3.6 Score=43.49 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.9
Q ss_pred CCCCeeEeeechhhhhhc
Q psy2354 566 RSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~~ 583 (749)
+.+..+||||.|+|+|+.
T Consensus 91 ~~~~PvLGIC~G~Qlla~ 108 (242)
T PRK07567 91 ARDFPFLGACYGVGTLGH 108 (242)
T ss_pred hcCCCEEEEchhHHHHHH
Confidence 457999999999999994
No 129
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=69.85 E-value=3.7 Score=41.49 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 557 KTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 557 ~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+.+++ + ..+..+||||.|+|+|+.
T Consensus 63 ~~~i~~-~-~~~~PiLGIClG~Qlla~ 87 (190)
T PRK06895 63 FAMLER-Y-HQHKSILGVCLGHQTLCE 87 (190)
T ss_pred HHHHHH-h-cCCCCEEEEcHHHHHHHH
Confidence 344444 3 357899999999999984
No 130
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=69.76 E-value=3.2 Score=41.93 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 557 KTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 557 ~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+.++.+++ .+..+||||.|+|+|+.
T Consensus 90 ~~~~~~~~~-~~~PilgiC~G~Q~l~~ 115 (189)
T cd01745 90 LALLRAALE-RGKPILGICRGMQLLNV 115 (189)
T ss_pred HHHHHHHHH-CCCCEEEEcchHHHHHH
Confidence 445556664 56899999999999983
No 131
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=68.93 E-value=4.3 Score=40.53 Aligned_cols=27 Identities=30% Similarity=0.599 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+-+..++++ +..+||||.|+|+|+.
T Consensus 58 ~~~~~~~~~~~-~~PvlGIC~G~Q~l~~ 84 (178)
T cd01744 58 AIKTVRKLLGK-KIPIFGICLGHQLLAL 84 (178)
T ss_pred HHHHHHHHHhC-CCCEEEECHHHHHHHH
Confidence 34455566654 6899999999999983
No 132
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=68.10 E-value=3.8 Score=43.20 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.8
Q ss_pred HHHHHHhCCCCeeEeeechhhhhh
Q psy2354 559 QLNKFIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 559 ~f~~f~~r~dtf~LGICnGcQ~L~ 582 (749)
.+...++ .+..+||||.|||+|+
T Consensus 76 ~i~~~~~-~~~PvlGIClG~Q~l~ 98 (235)
T cd01746 76 AIKYARE-NNIPFLGICLGMQLAV 98 (235)
T ss_pred HHHHHHH-CCceEEEEEhHHHHHH
Confidence 3444443 5799999999999997
No 133
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=67.21 E-value=3.9 Score=47.52 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=28.1
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.|..+.+++.+|.+ .++.++|||.|+|+|+.
T Consensus 301 ~~l~~~~~~~~i~~~~~-~G~pvlgiCgG~q~Lg~ 334 (475)
T TIGR00313 301 YALKQSGFAEEILDFAK-EGGIVIGICGGYQMLGK 334 (475)
T ss_pred HHHHhcChHHHHHHHHH-cCCcEEEEcHHHHHhhh
Confidence 34566678899999885 57899999999999985
No 134
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=67.05 E-value=9.9 Score=41.81 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=63.9
Q ss_pred eeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccc
Q psy2354 651 ATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDG 730 (749)
Q Consensus 651 a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~Pvvg 730 (749)
..--|...|.+.. ||.++-++..-|+|.+..+|+.|++-+.+. +-. ..++-..++.=..|+.-.|.+.|+|+++
T Consensus 126 vaiDGiHSRLSef-PFLaGFhvtRAalRDv~vmGa~p~alisDi---Hla--DDgDVgklfDf~AGvtaVsea~~vPl~a 199 (449)
T COG1973 126 VAIDGIHSRLSEF-PFLAGFHVTRAALRDVYVMGARPVALISDI---HLA--DDGDVGKLFDFTAGVTAVSEAVGVPLLA 199 (449)
T ss_pred EEecchhhhhhcC-cchhhhHHHHHHHHHHHHcCcccceeeeee---eec--cCcchhhhhhhhhhhhHHHHHhCCceec
Confidence 3334556666665 899999999999999999999998854322 222 2344466888888999999999999998
Q ss_pred cccCccceEecCCcee
Q psy2354 731 GKDSLSMAARVGKETV 746 (749)
Q Consensus 731 GkdSls~~~~~~~~~v 746 (749)
|. +.|++|+-|
T Consensus 200 GS-----TLRiGGDmV 210 (449)
T COG1973 200 GS-----TLRIGGDMV 210 (449)
T ss_pred cc-----ceEEcCeeE
Confidence 84 668877655
No 135
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=65.58 E-value=4.2 Score=41.06 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.2
Q ss_pred CCCeeEeeechhhhhhc
Q psy2354 567 SDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~ 583 (749)
.+..+||||.|.|+|+.
T Consensus 71 ~~~PiLGIC~G~Qlla~ 87 (191)
T PRK06774 71 DKLPILGVCLGHQALGQ 87 (191)
T ss_pred CCCCEEEECHHHHHHHH
Confidence 47899999999999984
No 136
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=65.05 E-value=8.2 Score=42.66 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=35.8
Q ss_pred hhccccccEEEEccCCHHHHHHHHHHcCCCeeEeeEeec
Q psy2354 422 LFAEELGWLLEVTNENEAFVLEQFKAANVSCKKIGVCDA 460 (749)
Q Consensus 422 LfSEe~G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~ 460 (749)
-||=--||++.|++++.++++++++.+|.++.+||++.+
T Consensus 296 tFNmGvG~v~iv~~e~~~~~~~~l~~~g~~a~~iG~V~~ 334 (345)
T COG0150 296 TFNMGVGMVLIVPEEDAEKALALLKEQGETAYVIGRVEA 334 (345)
T ss_pred HhcCccceEEEEcHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 466556899999999999999999999999999999987
No 137
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=64.67 E-value=5.7 Score=45.80 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.0
Q ss_pred HHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 547 AASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 547 a~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+..++.|..+.+.+.+|.+ .++.++|+|.|+|+|+.
T Consensus 302 ~~~l~~~~~~~~~i~~~~~-~g~~i~aiCgG~~~L~~ 337 (451)
T PRK01077 302 AAELAANTSMRASIRAAAA-AGKPIYAECGGLMYLGE 337 (451)
T ss_pred HHHHhhCchhHHHHHHHHH-cCCCEEEEcHHHHHHHh
Confidence 4556777888999998886 57899999999999984
No 138
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=64.14 E-value=31 Score=30.17 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=39.2
Q ss_pred EEcCCCCCChHHH---HHHhhcC-CCCccEEEEEEEEEEecCCCC---CHHHHHHHH-HhhcCccccc
Q psy2354 5 RYYSKPGIGAGEK---TKKLKAV-PKVISDIESELCYNIEISREL---TPVELDKLH-WILNSSFECR 64 (749)
Q Consensus 5 ~~~~~~als~~~~---l~~i~~~-~~~v~sv~te~~y~V~~~~~l---~~~~~~~L~-~LL~~~~~~~ 64 (749)
..|. |...+.+- .+.|+.. .++|.+|++.+.|.+..++.. ..++.+.++ .||..|+.++
T Consensus 7 V~~k-~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~~~l~~~~~~~~~a~~~v~~i~~~lL~Npvie~ 73 (80)
T TIGR00302 7 IRLK-KGVLDPEGAAIQRALALLGYNEVKDVRTGKVIELTIEADSEEAVEREVEEMCEKLLANPVIHD 73 (80)
T ss_pred EEEC-CCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEEEcCCChhhHHHHHHHHHHHhcCCceeeE
Confidence 3344 45454433 5556663 335888999999999754544 347788887 7999987664
No 139
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=61.54 E-value=9.3 Score=37.11 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=32.0
Q ss_pred ccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 551 LLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 551 L~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
..|+.+.+.+.+++. .++.+.+||+|.++|+..|++.
T Consensus 78 ~~~~~~~~~l~~~~~-~~~~i~~ic~G~~~La~aglL~ 114 (165)
T cd03134 78 RRDPDAVAFVRAFAE-AGKPVAAICHGPWVLISAGVVR 114 (165)
T ss_pred ccCHHHHHHHHHHHH-cCCeEEEEchHHHHHHhcCccC
Confidence 356778888888886 6789999999999999999998
No 140
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=61.10 E-value=5.2 Score=40.79 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=36.2
Q ss_pred CCeeEeeechhhhhhccC---c-cccCcCCcCcccccccccc--cC-CCcceeeeEEEEecCCCcccccCCCCceeeEEe
Q psy2354 568 DTFSFGVCNGCQLMNLLG---W-FSVSTQDKNNLVTDVMLSH--NN-SERFECRYSTVKIMKSPAIMLRNLENSVLGVWV 640 (749)
Q Consensus 568 dtf~LGICnGcQ~L~~~~---l-Ip~~~g~~~~~~p~~~~~~--N~-s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~v 640 (749)
+..+||||.|+|+|+..- . .+.. +- . ..+..+ +. ...-|--|-.|++.+ .+.+++++. ....++-
T Consensus 70 ~~PilGIClG~Qll~~~~~~~~~~~~l-g~----~-~g~v~~~~~~~~~~p~~G~~~v~~~~-~~~l~~~l~-~~~~v~~ 141 (196)
T PRK13170 70 TQPVLGICLGMQLLGERSEESGGVDCL-GI----I-DGPVKKMTDFGLPLPHMGWNQVTPQA-GHPLFQGIE-DGSYFYF 141 (196)
T ss_pred CCCEEEECHHHHHHhhhcccCCCCCCc-cc----c-cEEEEECCCCCCCCCccccceeEeCC-CChhhhCCC-cCCEEEE
Confidence 689999999999999431 1 1100 00 0 001111 00 011244566677643 355777764 3467788
Q ss_pred ecc
Q psy2354 641 AHG 643 (749)
Q Consensus 641 aHG 643 (749)
.|+
T Consensus 142 ~Hs 144 (196)
T PRK13170 142 VHS 144 (196)
T ss_pred ECe
Confidence 886
No 141
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=60.21 E-value=6.6 Score=39.28 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=17.9
Q ss_pred HHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 559 QLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 559 ~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+.+.+. .+..+||||.|+|+|+.
T Consensus 63 ~i~~~~~-~~~PvlGIC~G~Qlla~ 86 (184)
T cd01743 63 EIIRALA-GKVPILGVCLGHQAIAE 86 (184)
T ss_pred HHHHHHh-cCCCEEEECHhHHHHHH
Confidence 3444443 35899999999999994
No 142
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=60.10 E-value=7.3 Score=40.38 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=17.2
Q ss_pred HHHHHHhCCCCeeEeeechhhhhh
Q psy2354 559 QLNKFIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 559 ~f~~f~~r~dtf~LGICnGcQ~L~ 582 (749)
++.+...+.+..+||||-|+|+|.
T Consensus 97 ~l~~~a~~~~~PilGICrG~Q~ln 120 (217)
T PF07722_consen 97 ALIRNALGRGKPILGICRGMQLLN 120 (217)
T ss_dssp HHHHHHCCTT--EEEETHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcHHHHHHH
Confidence 344445678899999999999986
No 143
>PRK07053 glutamine amidotransferase; Provisional
Probab=60.09 E-value=8.1 Score=40.64 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.++++++ .+..+||||.|.|+|+.
T Consensus 72 ~~~~i~~~~~-~~~PvlGIC~G~Qlla~ 98 (234)
T PRK07053 72 EIALLRQRLA-AGLPTLGICLGAQLIAR 98 (234)
T ss_pred HHHHHHHHHH-CCCCEEEECccHHHHHH
Confidence 4455666664 47899999999999983
No 144
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=58.67 E-value=6.5 Score=43.42 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCcccccccc
Q psy2354 671 MAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKD 733 (749)
Q Consensus 671 ~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkd 733 (749)
=+|+=++..++|.||.|+. +++-+ +-+.|+ ++..-+-++|+++.|++-|+++|||--
T Consensus 83 D~VAM~VNDlv~~GAePl~---flDY~--A~gk~~-~~~~~~iv~GiaeGc~~ag~aLvGGET 139 (345)
T COG0150 83 DLVAMCVNDLVVQGAEPLF---FLDYL--ATGKLD-PEVAAQIVKGIAEGCKQAGCALVGGET 139 (345)
T ss_pred chheeecchhhhcCcchHH---HHhhh--hcCCCC-HHHHHHHHHHHHHHHHHhCCEEecccc
Confidence 4566778889999999987 44445 334554 477888999999999999999999953
No 145
>PRK00784 cobyric acid synthase; Provisional
Probab=58.06 E-value=8.1 Score=45.01 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=28.2
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
..+.|..+++++.++.+ .++.+||+|.|+|+|+..
T Consensus 307 ~~~~~~~l~~~i~~~~~-~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 307 AWLRESGWDEAIRAHAR-RGGPVLGICGGYQMLGRR 341 (488)
T ss_pred HHHHHcCHHHHHHHHHH-cCCeEEEECHHHHHHhhh
Confidence 34556678899999875 578999999999999953
No 146
>CHL00101 trpG anthranilate synthase component 2
Probab=57.95 E-value=7.6 Score=39.29 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.7
Q ss_pred HHHHHhCCCCeeEeeechhhhhhc
Q psy2354 560 LNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 560 f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+.+.+. .+..+||||.|+|+|+.
T Consensus 65 i~~~~~-~~~PiLGIClG~Qlla~ 87 (190)
T CHL00101 65 VISSYA-PYIPILGVCLGHQSIGY 87 (190)
T ss_pred HHHHhc-CCCcEEEEchhHHHHHH
Confidence 334444 46899999999999984
No 147
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=56.32 E-value=8.1 Score=40.01 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=18.1
Q ss_pred HHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 559 QLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 559 ~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
-+..+++ .+..+||||.|+|+|+.
T Consensus 68 ~i~~~~~-~~~PiLGIC~G~Qlla~ 91 (214)
T PRK07765 68 MVRACAA-AGTPLLGVCLGHQAIGV 91 (214)
T ss_pred HHHHHHh-CCCCEEEEccCHHHHHH
Confidence 3444454 46899999999999983
No 148
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=56.02 E-value=9.2 Score=43.97 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=23.9
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.|... +++.+|.+ .++.++|+|+|+|+|++
T Consensus 294 ~n~~~-~~i~~~~~-~G~pi~aeCGG~q~L~~ 323 (433)
T PRK13896 294 DSPAL-DELADRAA-DGLPVLGECGGLMALAE 323 (433)
T ss_pred hCCcH-HHHHHHHH-CCCcEEEEehHHHHhhc
Confidence 34344 78888884 67999999999999984
No 149
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=55.25 E-value=13 Score=36.97 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=30.8
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
.++.+.+.++++++ .++.+.|||.|.++|+..|++.
T Consensus 93 ~~~~~~~~l~~~~~-~~k~i~~ic~G~~~La~agll~ 128 (180)
T cd03169 93 LDEKVLAIVRHFAE-ANKPVAAICHGPQILAAAGVLK 128 (180)
T ss_pred cCHHHHHHHHHHHH-cCCEEEEECcHHHHHHHcCccC
Confidence 46677888888885 5789999999999999999987
No 150
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=55.01 E-value=9.8 Score=38.89 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.+++| .....+||||.|.|.++.
T Consensus 64 ~~~~i~~~--~~~~PiLGVCLGHQai~~ 89 (191)
T COG0512 64 SLELIRRF--AGRIPILGVCLGHQAIAE 89 (191)
T ss_pred HHHHHHHh--cCCCCEEEECccHHHHHH
Confidence 45566666 456899999999999884
No 151
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=53.93 E-value=10 Score=40.94 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=13.8
Q ss_pred CeeEeeechhhhhhc
Q psy2354 569 TFSFGVCNGCQLMNL 583 (749)
Q Consensus 569 tf~LGICnGcQ~L~~ 583 (749)
..++|+|.|||+|+.
T Consensus 93 ~Pv~GiClG~QlL~~ 107 (273)
T cd01747 93 FPVWGTCLGFELLTY 107 (273)
T ss_pred CcEEEEcHHHHHHHH
Confidence 799999999999984
No 152
>PLN02327 CTP synthase
Probab=53.86 E-value=8.2 Score=45.49 Aligned_cols=20 Identities=20% Similarity=0.472 Sum_probs=16.8
Q ss_pred HHhCCCCeeEeeechhhhhh
Q psy2354 563 FIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 563 f~~r~dtf~LGICnGcQ~L~ 582 (749)
+....+...||||+|+|+|+
T Consensus 386 ~are~~iP~LGIClGmQl~v 405 (557)
T PLN02327 386 YARENKVPYLGICLGMQIAV 405 (557)
T ss_pred HHHHcCCCEEEEcHHHHHHH
Confidence 33346899999999999998
No 153
>PRK05670 anthranilate synthase component II; Provisional
Probab=53.57 E-value=10 Score=38.20 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.0
Q ss_pred CCCeeEeeechhhhhhc
Q psy2354 567 SDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~ 583 (749)
.+..+||||.|+|+|+.
T Consensus 71 ~~~PvLGIClG~Qlla~ 87 (189)
T PRK05670 71 GKVPILGVCLGHQAIGE 87 (189)
T ss_pred CCCCEEEECHHHHHHHH
Confidence 45889999999999994
No 154
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=53.23 E-value=9.8 Score=38.80 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.1
Q ss_pred CCCeeEeeechhhhhhc
Q psy2354 567 SDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~ 583 (749)
.+..+||||.|.|+|+.
T Consensus 71 ~~~PvLGIClG~Qlla~ 87 (195)
T PRK07649 71 GKIPIFGVCLGHQSIAQ 87 (195)
T ss_pred CCCCEEEEcHHHHHHHH
Confidence 46889999999999984
No 155
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=53.16 E-value=12 Score=36.56 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=30.2
Q ss_pred hccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 550 LLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 550 iL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
...++.+.+.+.++.+ ..+++.++|+|-.+|++.|++.
T Consensus 76 ~~~~~~l~~~l~~~~~-~~~~i~aic~G~~~La~aGlL~ 113 (166)
T PF13278_consen 76 AAKDPALLDWLRQQHA-QGTYIAAICTGALLLAEAGLLD 113 (166)
T ss_dssp HTT-HHHHHHHHHHHC-CTSEEEEETTHHHHHHHTTTTT
T ss_pred cccCHHHHHHhhhhhc-cceEEeeeehHHHHHhhhhccC
Confidence 3455667777777664 4599999999999999999998
No 156
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=52.98 E-value=27 Score=35.67 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=45.5
Q ss_pred HHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccC-CCcceeeeEEEEec
Q psy2354 546 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNN-SERFECRYSTVKIM 621 (749)
Q Consensus 546 wa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~-s~rfEsr~~~V~I~ 621 (749)
-...++....+.+.+.+|....+..++|-|-|+-||++. ....+... -.--+++..||. -.|-||--..+.++
T Consensus 46 ti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~-v~~~~q~~--Lg~ldi~V~RNafGrQ~~SFe~~l~i~ 119 (188)
T PF01174_consen 46 TIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE-VEGQGQPL--LGLLDITVRRNAFGRQLDSFEADLDIP 119 (188)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE-ECSSCCTS--S--EEEEEETTTTCSSSCEEEEEEEET
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh-hhhccccc--ccceeEEEEccccccchhcEEEEEEee
Confidence 344555566799999999988779999999999999853 11110000 001146888998 44556655566664
No 157
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=51.01 E-value=10 Score=40.30 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=14.8
Q ss_pred CCCeeEeeechhhhhh
Q psy2354 567 SDTFSFGVCNGCQLMN 582 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~ 582 (749)
.+..+||||-|+|+|.
T Consensus 106 ~~~PILGICrG~Qlln 121 (254)
T PRK11366 106 RRIPIFAICRGLQELV 121 (254)
T ss_pred CCCCEEEECHhHHHHH
Confidence 5799999999999998
No 158
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=50.95 E-value=12 Score=41.91 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 557 KTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 557 ~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+.+.++++ +..+||||.|.|+|+.
T Consensus 234 i~~i~~~~~--~~PILGIClG~QlLa~ 258 (358)
T TIGR01368 234 IETIRKLLE--KIPIFGICLGHQLLAL 258 (358)
T ss_pred HHHHHHHHc--CCCEEEECHHHHHHHH
Confidence 345556664 7899999999999984
No 159
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=50.71 E-value=8.2 Score=39.00 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.1
Q ss_pred CCCeeEeeechhhhhhc
Q psy2354 567 SDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~ 583 (749)
.+..+||||.|+|+|+.
T Consensus 71 ~~~PiLGIClG~Q~la~ 87 (187)
T PRK08007 71 GRLPILGVCLGHQAMAQ 87 (187)
T ss_pred CCCCEEEECHHHHHHHH
Confidence 46899999999999984
No 160
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=50.44 E-value=18 Score=35.66 Aligned_cols=36 Identities=6% Similarity=0.142 Sum_probs=30.8
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
.++.+.+.+++|.++ ++.+.+||+|.++|+..|++-
T Consensus 76 ~~~~l~~~l~~~~~~-~~~i~aic~G~~~La~aGlL~ 111 (170)
T cd03140 76 EAPDLAGLVRQALKQ-GKPVAAICGATLALARAGLLN 111 (170)
T ss_pred CcHHHHHHHHHHHHc-CCEEEEEChHHHHHHHCCCcC
Confidence 466788888888764 689999999999999999987
No 161
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=49.96 E-value=18 Score=34.30 Aligned_cols=43 Identities=14% Similarity=-0.035 Sum_probs=34.5
Q ss_pred HHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCcccc
Q psy2354 546 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSV 589 (749)
Q Consensus 546 wa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~ 589 (749)
+...+..++.+.+.+++++. .++.+.+||.|-.+|+..|+++.
T Consensus 74 ~~~~~~~~~~l~~~l~~~~~-~~~~I~aic~G~~~La~aGll~~ 116 (142)
T cd03132 74 AAFALAPSGRALHFVTEAFK-HGKPIGAVGEGSDLLEAAGIPLE 116 (142)
T ss_pred CHHHHccChHHHHHHHHHHh-cCCeEEEcCchHHHHHHcCCCCC
Confidence 33444567788888988886 46899999999999999998774
No 162
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=49.36 E-value=19 Score=30.46 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=23.7
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhh
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLM 581 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L 581 (749)
.++.+.+.+.++..+ .+.++|+|.|.|++
T Consensus 64 ~~~~~~~~i~~~~~~-~~~i~~~c~g~~~l 92 (115)
T cd01653 64 RDEALLALLREAAAA-GKPILGICLGAQLL 92 (115)
T ss_pred cCHHHHHHHHHHHHc-CCEEEEECchhHhH
Confidence 356677778888865 78999999999988
No 163
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=49.35 E-value=12 Score=37.88 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCCeeEeeechhhhhhc
Q psy2354 567 SDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~ 583 (749)
.+..+||||.|.|+|+.
T Consensus 71 ~~~PiLGIClG~Qlia~ 87 (193)
T PRK08857 71 GKLPILGVCLGHQAIAQ 87 (193)
T ss_pred CCCCEEEEcHHHHHHHH
Confidence 57899999999999983
No 164
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=48.99 E-value=15 Score=41.25 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.+.++++ .+..+||||.|+|+|+.
T Consensus 237 ~~~~i~~~~~-~~~PilGIClG~QlLa~ 263 (360)
T PRK12564 237 AIEMIRELLE-KKIPIFGICLGHQLLAL 263 (360)
T ss_pred HHHHHHHHHH-cCCeEEEECHHHHHHHH
Confidence 3445566665 46899999999999983
No 165
>PRK05637 anthranilate synthase component II; Provisional
Probab=48.81 E-value=14 Score=38.23 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=15.0
Q ss_pred CCCeeEeeechhhhhhc
Q psy2354 567 SDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~ 583 (749)
.+..+||||.|+|+|+.
T Consensus 72 ~~~PiLGIClG~Qlla~ 88 (208)
T PRK05637 72 GQIPLLGICLGFQALLE 88 (208)
T ss_pred CCCCEEEEcHHHHHHHH
Confidence 36889999999999994
No 166
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=48.28 E-value=19 Score=28.93 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=23.0
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhh
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLM 581 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L 581 (749)
.+....+.+.+++.+ .+.++|+|.|.|++
T Consensus 64 ~~~~~~~~~~~~~~~-~~~i~~~~~g~~~~ 92 (92)
T cd03128 64 WDEALLALLREAAAA-GKPVLGICLGAQLL 92 (92)
T ss_pred cCHHHHHHHHHHHHc-CCEEEEEecccccC
Confidence 356677888888865 78999999999864
No 167
>KOG1224|consensus
Probab=47.68 E-value=11 Score=43.93 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=17.5
Q ss_pred HHhCCCCeeEeeechhhhhhc
Q psy2354 563 FIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 563 f~~r~dtf~LGICnGcQ~L~~ 583 (749)
|....|-.+||||.|||.|++
T Consensus 90 ~~~~~~iPilGICLGfQal~l 110 (767)
T KOG1224|consen 90 LLECRDIPILGICLGFQALGL 110 (767)
T ss_pred HHhcCCCceeeeehhhHhHhh
Confidence 445669999999999999873
No 168
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=46.33 E-value=16 Score=41.29 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 557 KTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 557 ~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+.+.+++. .+..+||||.|.|+|+.
T Consensus 253 i~~i~~~~~-~~~PilGIClGhQlLa~ 278 (382)
T CHL00197 253 IKTVKKLLK-YNIPIFGICMGHQILSL 278 (382)
T ss_pred HHHHHHHHh-CCCCEEEEcHHHHHHHH
Confidence 345566664 36899999999999984
No 169
>PF07236 Phytoreo_S7: Phytoreovirus S7 protein; InterPro: IPR009873 This family consists of several Phytoreovirus S7 proteins which are thought to be viral core proteins [].; GO: 0019012 virion; PDB: 1UF2_K.
Probab=45.65 E-value=6.9 Score=44.29 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=0.0
Q ss_pred cCCccccccee--eEE----------EEeeCCccc---cccccccccccCCCCccCCCCccccCChHHHHHH
Q psy2354 201 LCKPLHCKTLR--MIS----------AREKCPVQF---VGVVTGSNKVQGDNAADLDFDAVQRGDPEMGQKL 257 (749)
Q Consensus 201 fg~p~~~g~~r--m~~----------v~~Gg~~~r---~G~gG~Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~ 257 (749)
||-|-|+|.|| .|+ .++|-|.|- .-++.+||.++.+..++.|.+.|--=|..|-+..
T Consensus 107 fgvpfiqGAfrh~viss~G~~tsllilVvgPPsgF~~k~~V~sasS~V~v~sna~IdL~d~V~iNs~M~~~T 178 (506)
T PF07236_consen 107 FGVPFIQGAFRHRVISSMGPETSLLILVVGPPSGFSRKPSVSSASSVVEVESNADIDLNDTVAINSAMIKNT 178 (506)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hCchhhhhHHHhhHHhhcCCcceEEEEEEcCCcccccccccccccceEEeeccCccchhhhhhhhHHHhhcC
Confidence 99999999999 443 566766554 3444457777777778999999888888887764
No 170
>PRK06186 hypothetical protein; Validated
Probab=45.51 E-value=14 Score=38.99 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=16.0
Q ss_pred HHhCCCCeeEeeechhhhhh
Q psy2354 563 FIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 563 f~~r~dtf~LGICnGcQ~L~ 582 (749)
+-...+...||||.|+|+++
T Consensus 77 ~Are~~iP~LGIClGmQ~av 96 (229)
T PRK06186 77 FARENGIPFLGTCGGFQHAL 96 (229)
T ss_pred HHHHcCCCeEeechhhHHHH
Confidence 33447899999999999765
No 171
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=44.65 E-value=17 Score=40.69 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 558 TQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 558 ~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+.+.+++++ ..+||||.|.|+|+.
T Consensus 229 ~~i~~~~~~--~PvlGIClG~QlLa~ 252 (354)
T PRK12838 229 PEIKKLISS--YPILGICLGHQLIAL 252 (354)
T ss_pred HHHHHHhcC--CCEEEECHHHHHHHH
Confidence 455566654 889999999999983
No 172
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=41.72 E-value=17 Score=42.81 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=15.3
Q ss_pred CCCCeeEeeechhhhhh
Q psy2354 566 RSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~ 582 (749)
..+...||||.|+|+|+
T Consensus 370 e~~iP~LGIClG~Qll~ 386 (525)
T TIGR00337 370 ENNIPFLGICLGMQLAV 386 (525)
T ss_pred HcCCCEEEEcHHHHHHH
Confidence 46799999999999997
No 173
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=41.59 E-value=37 Score=32.54 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=36.3
Q ss_pred hHHHHHhhccC-hhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 543 AKGWAASLLLN-EGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 543 gkgwa~siL~n-~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
|.+|+..+-.+ +.+.+-+++|+++ ++.+.+||.|-.+|+..|++.
T Consensus 46 G~~~~~~l~~~~~~l~~~~~~~~~~-~k~iaaIC~g~~~L~~~gll~ 91 (147)
T PF01965_consen 46 GHGGADDLRTDSKDLLELLKEFYEA-GKPIAAICHGPAVLAAAGLLK 91 (147)
T ss_dssp BTHHHHHHTTCHHHHHHHHHHHHHT-T-EEEEETTCHHHHHHTTTTT
T ss_pred CCchhhhHhhHHHHHHHHHHHHHHc-CCeEEecCCCcchhhccCccC
Confidence 45566666645 8898888888876 899999999999999999988
No 174
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=40.61 E-value=29 Score=33.66 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=31.3
Q ss_pred hccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 550 LLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 550 iL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
...++.+.+.+.++++ .++.+.+||.|.++|+..|++-
T Consensus 75 ~~~~~~l~~~l~~~~~-~~~~i~~ic~G~~~La~aglL~ 112 (166)
T TIGR01382 75 LRLNNKAVRLVREFVE-KGKPVAAICHGPQLLISAGVLR 112 (166)
T ss_pred hccCHHHHHHHHHHHH-cCCEEEEEChHHHHHHhcCccC
Confidence 3456778888887775 5689999999999999999986
No 175
>PRK05380 pyrG CTP synthetase; Validated
Probab=40.49 E-value=18 Score=42.53 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=15.4
Q ss_pred CCCCeeEeeechhhhhh
Q psy2354 566 RSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~ 582 (749)
..+...||||.|+|+|.
T Consensus 370 e~~iPiLGIClGmQll~ 386 (533)
T PRK05380 370 ENNIPFLGICLGMQLAV 386 (533)
T ss_pred HCCCcEEEEchHHHHHH
Confidence 46799999999999998
No 176
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=38.42 E-value=33 Score=33.96 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=32.3
Q ss_pred hccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 550 LLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 550 iL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
...|+.+.+.++++..+ ++.+.+||+|.++|+..|++.
T Consensus 79 ~~~~~~l~~~l~~~~~~-~~~i~aic~g~~~La~aGlL~ 116 (187)
T cd03137 79 RPPPPALLAALRRAAAR-GARVASVCTGAFVLAEAGLLD 116 (187)
T ss_pred ccCCHHHHHHHHHHHhc-CCEEEEECHHHHHHHHccCcC
Confidence 44577888888888855 789999999999999999987
No 177
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=38.41 E-value=25 Score=39.22 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.-+.+++++.. ...++|||.|.|+|++
T Consensus 239 ~i~~ik~l~~~-~iPifGICLGHQllal 265 (368)
T COG0505 239 AIETIKELLGT-KIPIFGICLGHQLLAL 265 (368)
T ss_pred HHHHHHHHhcc-CCCeEEEcHHHHHHHH
Confidence 44556777764 3589999999999984
No 178
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=38.39 E-value=25 Score=40.27 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.+.+++ .+..+||||.|.|+|++
T Consensus 300 ~ie~ik~l~--~~iPIlGICLGhQlLa~ 325 (415)
T PLN02771 300 AVETVKELL--GKVPVFGICMGHQLLGQ 325 (415)
T ss_pred HHHHHHHHH--hCCCEEEEcHHHHHHHH
Confidence 344555555 36899999999999984
No 179
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=37.94 E-value=43 Score=32.09 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=32.7
Q ss_pred hccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 550 LLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 550 iL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
+..++.+.+.+++|++ .++.+.+||+|..+|+..|++.
T Consensus 76 ~~~~~~l~~~l~~~~~-~~~~i~~ic~g~~~La~aglL~ 113 (163)
T cd03135 76 LADNEKLIKLLKEFNA-KGKLIAAICAAPAVLAKAGLLK 113 (163)
T ss_pred HHhCHHHHHHHHHHHH-cCCEEEEEchhHHHHHHcCCcC
Confidence 4457888998988886 5689999999999999999987
No 180
>KOG0237|consensus
Probab=37.14 E-value=36 Score=40.29 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=47.5
Q ss_pred ccCCccEEEEcCCCC----------CC---CcHHHHhhccccccEEEEccCCHHHHHHHHHHcCCCeeEeeEeec
Q psy2354 399 FAGLSGMTVDIPSDV----------TT---SEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKIGVCDA 460 (749)
Q Consensus 399 fag~~G~~I~L~~~~----------~~---~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~ 460 (749)
+-.+.|+.||.+..+ .| .+-+.--||=-.|||+.|++++++++++-+++++-.++.||++.+
T Consensus 695 lp~~l~~~id~~twe~p~vF~Wl~~aG~v~~~em~RTfN~GiGmVlvVs~e~ve~v~kel~~~~e~~~~iG~vv~ 769 (788)
T KOG0237|consen 695 LPDHLGAVIDADTWELPPVFKWLQQAGNVPDSEMARTFNCGIGMVLVVSPENVERVLKELTNHGEEAYRIGEVVN 769 (788)
T ss_pred cccccceEEecccccCcHHHHHHHHcCCCCHHHHHHHhccccceEEEEcHHHHHHHHHHHhhCCeEEEEEEeEee
Confidence 456677788776421 11 112344677777999999999999999999999999999999987
No 181
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=36.77 E-value=42 Score=32.91 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 547 AASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 547 a~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
...+..++.+.+.+++|.+ ..+.+.+||.|..+|+..|++-
T Consensus 76 ~~~~~~~~~l~~~l~~~~~-~~~~i~~ic~G~~~La~aGlL~ 116 (179)
T TIGR01383 76 AENLRNSKLLLNILKKQES-KGKLVAAICAAPAVLLAAGVLL 116 (179)
T ss_pred HHHHhhCHHHHHHHHHHHH-CCCEEEEEChhHHHHHhcCCCC
Confidence 3344457778888888885 5689999999999999999986
No 182
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=34.70 E-value=28 Score=42.69 Aligned_cols=83 Identities=8% Similarity=-0.003 Sum_probs=49.8
Q ss_pred CCcHHHHhhcccc-ccEEEEccCCHHHHHHHHH--HcCCCeeEeeEeecCC-------------CCcEEEEEECCEEEEE
Q psy2354 415 TSEVLELLFAEEL-GWLLEVTNENEAFVLEQFK--AANVSCKKIGVCDAFG-------------MNAKISVAVNNEPVLN 478 (749)
Q Consensus 415 ~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~--~~gv~~~~IG~vt~~~-------------~~~~i~I~~~g~~v~~ 478 (749)
+.++++.+.+-.+ |.|-=.++...-++++-++ ..|+-+-.||.+...+ .++.+.+..++-.|++
T Consensus 395 ~~~~~d~~~~~~p~gtvtGaPK~rAm~iI~elE~~~Rg~Y~GavG~~~~~G~~d~~I~IRt~~~~~~~~~~~aGaGIV~d 474 (717)
T TIGR01815 395 GMDALDAFLSHSWAVTVTGAPKRWAMQFIEDTEQSPRRWYGGAFGRLGFNGGMNTGLTLRTIRMADGIAEVRAGATLLYD 474 (717)
T ss_pred CCCHHHHHhhcCCCCCCCCccHHHHHHHHHHhcCCCCcceEEEEEEEeCCCCEEEEEEEEEEEEECCEEEEEeeeEEECC
Confidence 5677887777777 5665565544444555454 3355577888876411 1234455556656554
Q ss_pred ecHHHHHHHhhhhhHHHHHhhc
Q psy2354 479 EDLGTLFLIWERTSYELEKLQM 500 (749)
Q Consensus 479 ~~~~~L~~~W~~ts~~~~~l~~ 500 (749)
-.. ...|.||-.++..+..
T Consensus 475 S~P---~~E~~Et~~K~~a~l~ 493 (717)
T TIGR01815 475 SDP---DAEEAETRLKAAAFRD 493 (717)
T ss_pred CCc---hHHHHHHHHHHHHHHH
Confidence 433 4578888888877654
No 183
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=34.00 E-value=39 Score=33.73 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.0
Q ss_pred hccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 550 LLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 550 iL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
...|+.+.+.+++|.+ ..+.+.+||+|-.+|++.|++-
T Consensus 87 ~~~~~~l~~~l~~~~~-~~~~i~aic~G~~~La~agll~ 124 (195)
T cd03138 87 LADNPALIAWLRRQHA-NGATVAAACTGVFLLAEAGLLD 124 (195)
T ss_pred hhccHHHHHHHHHHHH-cCCEEEEecHHHHHHHHccCcC
Confidence 4467788888888885 5679999999999999999986
No 184
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=32.65 E-value=66 Score=27.36 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=28.6
Q ss_pred hccccccEEEEccCCHHHHHHHHHHcCCCeeEe
Q psy2354 423 FAEELGWLLEVTNENEAFVLEQFKAANVSCKKI 455 (749)
Q Consensus 423 fSEe~G~VleV~~~~~~~v~~~~~~~gv~~~~I 455 (749)
++...|+.+.+++++.+.+.+++++.|+...-|
T Consensus 37 i~~~CG~al~~~~~d~~~i~~~l~~~~i~~~~i 69 (73)
T PF11823_consen 37 ISAGCGLALRFEPEDLEKIKEILEENGIEYEGI 69 (73)
T ss_pred ccCCCCEEEEEChhhHHHHHHHHHHCCCCeeEE
Confidence 377789999999999999999999999986544
No 185
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=31.85 E-value=31 Score=40.13 Aligned_cols=29 Identities=17% Similarity=0.517 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
.+.+++.++..+ ++-++|||-|+|||..+
T Consensus 313 g~d~~i~~~~~~-~~~viGICGG~QmLG~~ 341 (486)
T COG1492 313 GMDEKILEYARK-GGDVIGICGGYQMLGRR 341 (486)
T ss_pred CHHHHHHHHHhC-CCCEEEEcchHHhhhhh
Confidence 345567777654 89999999999999843
No 186
>PRK13566 anthranilate synthase; Provisional
Probab=31.54 E-value=34 Score=41.94 Aligned_cols=83 Identities=11% Similarity=0.032 Sum_probs=47.8
Q ss_pred CCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHH--cCCCeeEeeEeecCC-------------CCcEEEEEECCEEEEE
Q psy2354 415 TSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKA--ANVSCKKIGVCDAFG-------------MNAKISVAVNNEPVLN 478 (749)
Q Consensus 415 ~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~--~gv~~~~IG~vt~~~-------------~~~~i~I~~~g~~v~~ 478 (749)
+.++++.+.+=.+ |-|-=.++...-++++-++. .|+-+-.||.+...+ .++.+.+..++-.|++
T Consensus 405 ~~~~~d~~~~~~P~gtvtGaPK~~Am~iI~~lE~~~Rg~Y~GaiG~~~~~G~~d~~I~IRt~~~~~~~~~~~aGaGIv~d 484 (720)
T PRK13566 405 GFDALDAFLTHAWAVTVTGAPKLWAMQFIEDHERSPRRWYGGAVGMVGFDGDMNTGLTLRTIRIKDGVAEVRVGATLLFD 484 (720)
T ss_pred CCCHHHHHhhCCCCCCCCCchHHHHHHHHHHhcCCCCcceEEEEEEEecCCCEEEEEEeeEEEEECCEEEEEEccEEECC
Confidence 4567777666666 45544555443444444442 345566788775311 1245666667766665
Q ss_pred ecHHHHHHHhhhhhHHHHHhhc
Q psy2354 479 EDLGTLFLIWERTSYELEKLQM 500 (749)
Q Consensus 479 ~~~~~L~~~W~~ts~~~~~l~~ 500 (749)
-.. ...|.||..++..+..
T Consensus 485 S~p---~~E~~Et~~K~~~ll~ 503 (720)
T PRK13566 485 SDP---EAEEAETELKASALLQ 503 (720)
T ss_pred CCh---HHHHHHHHHhHHHHHH
Confidence 443 3578888888777654
No 187
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=28.37 E-value=59 Score=35.91 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=50.3
Q ss_pred cChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCcccccccc
Q psy2354 663 VDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKD 733 (749)
Q Consensus 663 ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkd 733 (749)
-|||.=++-|..-|+..+-++|..|+..++.+ || + -+-=.++.+.+-..|=.+.||+-++++.||+-
T Consensus 75 ddp~dfG~IaAtNaIsDv~amgg~pi~AiAI~-g~--~-~~~l~~~i~~ei~~gg~~~~rea~i~lagGhs 141 (346)
T COG0709 75 DDPFDFGRIAATNAISDVFAMGGKPIMAIAIL-GF--P-NDLLDKEIAQEVIEGGRDACREAGIALAGGHS 141 (346)
T ss_pred cCcchhhhhhhcccccchhhcCCcchhhhhhc-CC--c-ccccCHHHHHHHHHhhHHHHHHhCccccCCcc
Confidence 47777777777778888888999999877655 66 3 11223466667777878999999999999973
No 188
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=28.16 E-value=1.2e+02 Score=33.37 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=18.8
Q ss_pred HHHHHHhCCCCeeEeeechhhhhh
Q psy2354 559 QLNKFIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 559 ~f~~f~~r~dtf~LGICnGcQ~L~ 582 (749)
++.++..+..+.+||||.|-|+++
T Consensus 126 ~i~~w~~~~~~s~LgICwGaQa~a 149 (302)
T PRK05368 126 EILDWAKTHVTSTLFICWAAQAAL 149 (302)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHH
Confidence 344555556899999999999988
No 189
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=27.88 E-value=99 Score=31.99 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=52.2
Q ss_pred cHHHHhhccccc-cEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHH
Q psy2354 417 EVLELLFAEELG-WLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYE 494 (749)
Q Consensus 417 ~p~e~LfSEe~G-~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~ 494 (749)
.-+.-|+..-.+ -+|+|..+++..|...+++|||.++++-.... + ++++.|++.+ .+.+.+..+..+.+..
T Consensus 22 ~slk~L~k~g~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~-~-~~~~~V~FkA-----~Da~~i~~af~~~~~~ 93 (204)
T PF12687_consen 22 QSLKKLLKQGKGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKST-G-PGKYDVFFKA-----KDADVINRAFKEFSAK 93 (204)
T ss_pred eeHHHHHhcCCCceEEecCHhhHHHHHHHHHHcCCceEEeeccCC-C-CCcEEEEEEc-----CcHHHHHHHHHHHHHH
Confidence 346667776555 78999999999999999999999999986654 2 2567776654 3456666666655554
No 190
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=27.24 E-value=46 Score=41.02 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=15.1
Q ss_pred CCCeeEeeechhhhhhc
Q psy2354 567 SDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~ 583 (749)
.+..+||||.|+|+|+.
T Consensus 85 ~~iPvLGIClG~QlLa~ 101 (742)
T TIGR01823 85 DEVPVLGICLGFQSLCL 101 (742)
T ss_pred CCCcEEEEchhhHHHHh
Confidence 46899999999999994
No 191
>KOG0623|consensus
Probab=26.77 E-value=58 Score=36.09 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=29.9
Q ss_pred HHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhh
Q psy2354 545 GWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 545 gwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~ 582 (749)
|.+...|++....+.+.++.. .++..+|||.|.|+|.
T Consensus 52 g~~~D~L~~~Gf~eplr~Yie-sgkPfmgicvGlQaLF 88 (541)
T KOG0623|consen 52 GPAMDVLNRTGFAEPLRKYIE-SGKPFMGICVGLQALF 88 (541)
T ss_pred hHHHHHHhhhhhHHHHHHHHh-cCCCeEeehhhHHHHh
Confidence 456667777777888888886 5788999999999997
No 192
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=23.95 E-value=55 Score=34.78 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=15.1
Q ss_pred CCCCeeEeeechhhhhh
Q psy2354 566 RSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~ 582 (749)
..+..+||||=|+|+|-
T Consensus 105 e~~iPILgICRG~QllN 121 (243)
T COG2071 105 ERGIPILGICRGLQLLN 121 (243)
T ss_pred HcCCCEEEEccchHHHH
Confidence 36799999999999987
No 193
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=23.19 E-value=63 Score=30.95 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhCCCCeeEeee
Q psy2354 554 EGIKTQLNKFIARSDTFSFGVC 575 (749)
Q Consensus 554 ~~~~~~f~~f~~r~dtf~LGIC 575 (749)
+.+|+++....+..|-|.+|||
T Consensus 22 ~~Lr~~L~~~~~~sd~~~lGIc 43 (125)
T PF08854_consen 22 KKLRQALRLLASNSDWFTLGIC 43 (125)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEE
T ss_pred HHHHHHHHHHHhccCceEEEee
Confidence 4689999999999999999999
No 194
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=22.92 E-value=72 Score=30.02 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCCeeEeeechhh
Q psy2354 557 KTQLNKFIARSDTFSFGVCNGCQ 579 (749)
Q Consensus 557 ~~~f~~f~~r~dtf~LGICnGcQ 579 (749)
.+.+.+|. +..+..||||.|--
T Consensus 67 ~~~i~~~v-~~g~p~LGIClGAy 88 (114)
T cd03144 67 NRRIRNFV-RNGGNYLGICAGAY 88 (114)
T ss_pred cHHHHHHH-HCCCcEEEEecCcc
Confidence 67778887 57789999998744
No 195
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=22.86 E-value=99 Score=30.71 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=33.7
Q ss_pred HHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccC-ccc
Q psy2354 546 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG-WFS 588 (749)
Q Consensus 546 wa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~-lIp 588 (749)
|......++.+.+-+.+|++. ++++..||-|-++|...+ ++.
T Consensus 78 ~~~~~~~~~~~~~~v~~~~~~-~k~vaaIC~g~~~L~~ag~ll~ 120 (188)
T COG0693 78 GPEYLRPDPDLLAFVRDFYAN-GKPVAAICHGPAVLAAAGLLLK 120 (188)
T ss_pred chhhccCcHHHHHHHHHHHHc-CCEEEEEChhHHHHhccccccC
Confidence 344444457788888888876 999999999999999888 766
No 196
>PRK10026 arsenate reductase; Provisional
Probab=22.75 E-value=1.4e+02 Score=29.23 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=38.5
Q ss_pred CcEEEEcCCCCCChHHH-HHHhhcCCCCccEEEEEEEEEEecCCCCCHHHHHHHHHhhc
Q psy2354 1 MAIIRYYSKPGIGAGEK-TKKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILN 58 (749)
Q Consensus 1 ~~~~~~~~~~als~~~~-l~~i~~~~~~v~sv~te~~y~V~~~~~l~~~~~~~L~~LL~ 58 (749)
|+.+++|+.|..|..|. ++-|++. .+.-+...|++ .++|.++++.+-..+.
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~--~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLE--TPPTRDELVKLIADMG 52 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeC--CCcCHHHHHHHHHhCC
Confidence 78889999999999888 6667775 35555566666 7899998887776554
No 197
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=22.69 E-value=54 Score=38.79 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=15.0
Q ss_pred CCCeeEeeechhhhhhc
Q psy2354 567 SDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~ 583 (749)
.+..+||||.|+|+|+.
T Consensus 72 ~~~PvLGIClG~QlLa~ 88 (534)
T PRK14607 72 GKVPILGVCLGHQAIGY 88 (534)
T ss_pred cCCCEEEEcHHHHHHHH
Confidence 46889999999999994
No 198
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=21.93 E-value=1.7e+02 Score=32.29 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=51.7
Q ss_pred CcccHHHHHHHHhhcCCCeEEEEEEeCCCCE---EEEeccccccCCCCCCCCcccccc--hhhhhcCCCccccccCCccE
Q psy2354 331 KPLHCKTLRMISAREKCPVQFVGVVTGSNKI---VLAEDKAKYYSNPSSPLQHPVDIQ--MELICGKMPQKMAFAGLSGM 405 (749)
Q Consensus 331 ~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l---~~~~~~f~~~~~~~~~~~~~vdlp--~~~l~~~~p~~MAfag~~G~ 405 (749)
+++..+.++++++--+....+||.-|+++-+ +++++ .|...+++. .+.+.|.+| +..|++-|+
T Consensus 54 ~~e~a~eLkkla~~l~aspivVg~r~~~~~LE~GVVY~R----------~gV~~vs~~Tf~~~~~Ge~P--~v~a~rGG~ 121 (313)
T COG1395 54 SRETAEELKKLAKSLLASPIVVGLRTKNEPLEDGVVYER----------YGVPAVSPETFYDYVEGEPP--YVYAARGGF 121 (313)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEecCCCccccceEEEe----------cCceeeCHHHHHHHhCCCCc--eEEecCCeE
Confidence 4556678999999999999999999988877 66664 355555543 556668888 556778888
Q ss_pred EEEcCC
Q psy2354 406 TVDIPS 411 (749)
Q Consensus 406 ~I~L~~ 411 (749)
-|.++.
T Consensus 122 yV~Idg 127 (313)
T COG1395 122 YVKIDG 127 (313)
T ss_pred EEEech
Confidence 888873
No 199
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=21.63 E-value=62 Score=40.77 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.5
Q ss_pred CCCeeEeeechhhhhhcc
Q psy2354 567 SDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~~ 584 (749)
.+..+||||.|.|+|+..
T Consensus 161 ~~iPILGICLGhQ~i~~~ 178 (918)
T PLN02889 161 RDIPILGVCLGHQALGYV 178 (918)
T ss_pred CCCcEEEEcHHHHHHHHh
Confidence 468999999999999943
No 200
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=20.82 E-value=3.6e+02 Score=24.11 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=39.3
Q ss_pred EEcCCCCCCh-HHH-HHHhhcC-CCCccEEEEEEEEEEecCCC---CCHHHHHHHH-HhhcCccccc
Q psy2354 5 RYYSKPGIGA-GEK-TKKLKAV-PKVISDIESELCYNIEISRE---LTPVELDKLH-WILNSSFECR 64 (749)
Q Consensus 5 ~~~~~~als~-~~~-l~~i~~~-~~~v~sv~te~~y~V~~~~~---l~~~~~~~L~-~LL~~~~~~~ 64 (749)
.-+.+.-+.+ +++ .+.+... -..|.+||+-.+|.++++++ --.++++.++ .||.-|+.++
T Consensus 8 V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK~~el~ld~~~~e~a~~~v~~mcekLLaNpVIe~ 74 (83)
T COG1828 8 VTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGKVIELELDAESEEKAEEEVKEMCEKLLANPVIED 74 (83)
T ss_pred EEeCCcccCchhHHHHHHHHHcCCcccceeeeeeEEEEEecCcchhHHHHHHHHHHHHHhCCCceeE
Confidence 3344444444 333 5556663 35699999999999997652 2246677776 9999886553
No 201
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=20.71 E-value=49 Score=39.17 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=15.1
Q ss_pred CCCeeEeeechhhhhhc
Q psy2354 567 SDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~ 583 (749)
.+..+||||.|.|+|+.
T Consensus 76 ~~iPILGIClG~QlLa~ 92 (531)
T PRK09522 76 GKLPIIGICLGHQAIVE 92 (531)
T ss_pred cCCCEEEEcHHHHHHHH
Confidence 46899999999999984
Done!