Query psy2354
Match_columns 749
No_of_seqs 453 out of 2487
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:51:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugj_A Phosphoribosylformylgly 100.0 3E-113 9E-118 1051.6 54.8 618 3-650 10-1212(1303)
2 3ac6_A Phosphoribosylformylgly 100.0 8.6E-42 2.9E-46 404.7 17.8 380 160-740 103-531 (725)
3 1vk3_A Phosphoribosylformylgly 100.0 1.3E-39 4.5E-44 378.9 15.1 306 215-739 188-497 (615)
4 3ugj_A Phosphoribosylformylgly 100.0 5.2E-36 1.8E-40 368.4 13.2 370 281-749 380-805 (1303)
5 1vk3_A Phosphoribosylformylgly 99.0 5.1E-11 1.7E-15 138.8 2.1 181 293-489 143-354 (615)
6 3ac6_A Phosphoribosylformylgly 98.8 2.4E-09 8.3E-14 127.0 6.7 87 397-486 272-362 (725)
7 2yxz_A Thiamin-monophosphate k 98.7 5.7E-09 1.9E-13 111.5 3.3 96 629-736 28-127 (311)
8 3vti_C Hydrogenase maturation 98.7 1.2E-08 4.1E-13 109.3 5.4 118 258-390 181-310 (314)
9 2z1e_A Hydrogenase expression/ 98.5 5.3E-08 1.8E-12 105.1 5.0 105 273-389 215-333 (338)
10 2yyd_A Selenide, water dikinas 98.4 1.4E-07 4.7E-12 102.5 6.0 95 630-737 51-146 (345)
11 2rb9_A HYPE protein; hydrogena 98.3 3.7E-07 1.3E-11 98.6 5.9 107 270-388 210-328 (334)
12 3fd5_A Selenide, water dikinas 98.3 6.4E-07 2.2E-11 98.9 6.7 102 626-737 65-170 (394)
13 3u0o_A Selenide, water dikinas 98.3 7E-07 2.4E-11 97.0 6.3 96 630-737 49-145 (347)
14 3c9u_A Thiamine monophosphate 98.2 1E-06 3.5E-11 95.5 7.1 98 630-736 61-159 (342)
15 2v9y_A Phosphoribosylformylgly 98.2 4.8E-07 1.6E-11 97.8 3.9 93 272-365 213-320 (334)
16 3mcq_A Thiamine-monophosphate 98.2 1.3E-06 4.5E-11 93.7 6.1 94 630-735 25-122 (319)
17 2z1u_A Hydrogenase expression/ 98.2 4.9E-07 1.7E-11 97.9 2.5 118 256-388 200-337 (343)
18 3m84_A Phosphoribosylformylgly 98.1 1.4E-06 4.9E-11 94.7 4.8 93 271-363 246-349 (350)
19 3vti_C Hydrogenase maturation 98.1 9.9E-07 3.4E-11 94.3 2.8 81 650-737 30-113 (314)
20 2rb9_A HYPE protein; hydrogena 98.0 3.7E-06 1.3E-10 90.7 6.2 101 626-737 29-134 (334)
21 2btu_A Phosphoribosyl-aminoimi 98.0 1.3E-06 4.3E-11 94.8 1.1 93 272-365 239-342 (346)
22 2z1u_A Hydrogenase expression/ 97.9 2.4E-06 8E-11 92.6 1.4 69 664-737 66-134 (343)
23 2z1e_A Hydrogenase expression/ 97.9 1.2E-05 4E-10 86.8 6.6 95 629-737 40-137 (338)
24 2z01_A Phosphoribosylformylgly 97.9 4.8E-06 1.6E-10 90.3 3.0 67 664-736 78-144 (348)
25 2btu_A Phosphoribosyl-aminoimi 97.8 8.2E-06 2.8E-10 88.4 3.2 67 664-736 76-142 (346)
26 3p4e_A Phosphoribosylformylgly 97.8 7.4E-06 2.5E-10 89.0 2.6 86 272-357 243-338 (349)
27 3fd5_A Selenide, water dikinas 97.8 6.9E-06 2.4E-10 90.7 2.1 94 272-365 260-370 (394)
28 3mcq_A Thiamine-monophosphate 97.7 1.5E-05 5E-10 85.5 4.5 93 272-365 201-302 (319)
29 2yyd_A Selenide, water dikinas 97.7 5.2E-06 1.8E-10 90.1 0.8 92 272-363 221-344 (345)
30 2v9y_A Phosphoribosylformylgly 97.7 1.2E-05 4E-10 86.9 3.5 65 665-735 49-113 (334)
31 2z01_A Phosphoribosylformylgly 97.7 8.6E-06 2.9E-10 88.3 2.4 93 272-365 241-344 (348)
32 2yxz_A Thiamin-monophosphate k 97.7 1.9E-05 6.6E-10 84.0 4.9 91 271-363 200-298 (311)
33 2zod_A Selenide, water dikinas 97.7 2.6E-05 8.9E-10 84.4 5.5 95 630-737 51-146 (345)
34 3u0o_A Selenide, water dikinas 97.6 9.9E-06 3.4E-10 87.9 0.7 89 270-358 218-337 (347)
35 2zod_A Selenide, water dikinas 97.6 1.3E-05 4.4E-10 86.8 1.3 93 271-363 220-344 (345)
36 3d54_D Phosphoribosylformylgly 97.6 8.1E-05 2.8E-09 74.3 6.9 82 554-648 66-148 (213)
37 3m84_A Phosphoribosylformylgly 97.3 0.00016 5.3E-09 78.6 4.5 82 650-737 63-149 (350)
38 3p4e_A Phosphoribosylformylgly 97.2 0.00013 4.4E-09 79.2 3.2 67 665-737 84-150 (349)
39 1t4a_A PURS; tetramer, complex 96.5 0.0044 1.5E-07 53.5 6.5 61 78-138 5-69 (84)
40 1gtd_A MTH169; synthetase, FGA 96.3 0.0078 2.7E-07 52.1 6.6 60 78-138 6-70 (85)
41 1vq3_A Phosphoribosylformylgly 96.2 0.008 2.7E-07 53.0 6.6 47 77-123 18-64 (94)
42 2zw2_A Putative uncharacterize 96.1 0.0065 2.2E-07 53.4 5.3 61 78-138 9-75 (92)
43 2yx5_A UPF0062 protein MJ1593; 96.0 0.0052 1.8E-07 52.9 4.4 61 78-138 5-70 (83)
44 3c9u_A Thiamine monophosphate 95.5 0.0019 6.4E-08 69.9 -0.9 79 273-360 237-326 (342)
45 2dgb_A Hypothetical protein PU 94.6 0.067 2.3E-06 46.0 6.6 45 78-123 7-51 (84)
46 3mdo_A Putative phosphoribosyl 91.3 0.29 1E-05 53.5 7.0 53 416-469 326-380 (389)
47 3kiz_A Phosphoribosylformylgly 90.0 0.3 1E-05 53.5 5.6 53 416-469 328-383 (394)
48 3kiz_A Phosphoribosylformylgly 88.8 0.87 3E-05 49.9 8.2 90 273-365 282-385 (394)
49 4gud_A Imidazole glycerol phos 88.0 0.5 1.7E-05 46.6 5.2 18 566-583 70-87 (211)
50 3uow_A GMP synthetase; structu 87.9 0.38 1.3E-05 55.2 4.9 24 560-583 75-98 (556)
51 3tqi_A GMP synthase [glutamine 86.3 0.69 2.4E-05 52.6 5.8 61 567-644 81-148 (527)
52 2abw_A PDX2 protein, glutamina 85.3 0.51 1.8E-05 47.2 3.6 29 555-583 67-95 (227)
53 3fij_A LIN1909 protein; 11172J 85.2 1.1 3.6E-05 46.0 6.1 79 559-644 100-180 (254)
54 3l7n_A Putative uncharacterize 83.9 1.9 6.6E-05 43.4 7.2 71 556-644 73-145 (236)
55 2ywd_A Glutamine amidotransfer 83.0 0.65 2.2E-05 44.9 3.1 30 554-583 60-89 (191)
56 3mdo_A Putative phosphoribosyl 82.7 2.3 7.7E-05 46.6 7.6 90 273-365 281-382 (389)
57 2vpi_A GMP synthase; guanine m 82.5 1.2 4E-05 44.7 4.9 61 567-645 95-155 (218)
58 1gpm_A GMP synthetase, XMP ami 82.3 1.5 5.2E-05 49.8 6.3 62 567-645 78-146 (525)
59 2ywb_A GMP synthase [glutamine 80.9 1.1 3.9E-05 50.5 4.6 60 567-645 70-129 (503)
60 2vxo_A GMP synthase [glutamine 77.5 1.8 6.3E-05 50.9 5.0 61 567-645 100-160 (697)
61 1q7r_A Predicted amidotransfer 77.3 0.97 3.3E-05 45.1 2.3 27 556-583 83-109 (219)
62 2iss_D Glutamine amidotransfer 77.2 0.91 3.1E-05 44.8 2.1 28 555-583 79-106 (208)
63 2nv0_A Glutamine amidotransfer 75.4 1.2 4E-05 43.4 2.3 28 555-583 60-87 (196)
64 1gpw_B Amidotransferase HISH; 73.9 1.6 5.3E-05 42.7 2.7 27 556-583 66-92 (201)
65 1qdl_B Protein (anthranilate s 73.4 1.7 5.8E-05 42.4 2.8 62 566-644 75-138 (195)
66 1l9x_A Gamma-glutamyl hydrolas 73.4 1.8 6.1E-05 45.9 3.2 28 556-583 111-139 (315)
67 1ka9_H Imidazole glycerol phos 72.5 1.4 4.7E-05 43.1 1.9 29 555-584 63-91 (200)
68 1i1q_B Anthranilate synthase c 72.2 1.7 5.7E-05 42.3 2.4 23 560-583 69-91 (192)
69 1o1y_A Conserved hypothetical 71.9 1.7 5.9E-05 44.0 2.6 71 556-644 82-152 (239)
70 2a9v_A GMP synthase; structura 71.0 1.8 6.3E-05 42.9 2.5 61 566-644 83-143 (212)
71 1oi4_A Hypothetical protein YH 70.2 3.6 0.00012 40.0 4.3 40 548-588 99-138 (193)
72 2ywj_A Glutamine amidotransfer 67.8 2.3 7.8E-05 40.9 2.3 19 566-584 66-84 (186)
73 2v4u_A CTP synthase 2; pyrimid 66.9 3 0.0001 43.6 3.1 27 556-583 108-134 (289)
74 1a9x_B Carbamoyl phosphate syn 66.4 2.6 8.9E-05 46.0 2.7 27 556-583 250-276 (379)
75 1wl8_A GMP synthase [glutamine 64.2 2.4 8.1E-05 41.0 1.6 26 557-583 62-87 (189)
76 3m3p_A Glutamine amido transfe 62.0 3.7 0.00013 42.1 2.7 27 556-583 71-97 (250)
77 3l18_A Intracellular protease 61.0 8 0.00027 36.2 4.7 40 548-588 76-115 (168)
78 2w7t_A CTP synthetase, putativ 58.2 3.3 0.00011 42.9 1.5 24 559-583 88-111 (273)
79 2rk3_A Protein DJ-1; parkinson 53.8 11 0.00037 36.4 4.4 42 546-588 78-119 (197)
80 1vco_A CTP synthetase; tetrame 47.5 7 0.00024 44.6 2.1 24 559-583 376-399 (550)
81 2vrn_A Protease I, DR1199; cys 46.6 16 0.00054 34.9 4.2 40 548-588 89-128 (190)
82 1uf2_K Structural protein P7; 46.2 8.2 0.00028 41.9 2.2 57 201-257 107-178 (506)
83 1s1m_A CTP synthase; CTP synth 44.9 8.1 0.00028 44.1 2.1 25 558-583 363-387 (545)
84 3l4e_A Uncharacterized peptida 44.2 12 0.00042 37.0 3.0 37 546-583 92-128 (206)
85 4e08_A DJ-1 beta; flavodoxin-l 43.7 20 0.00068 34.3 4.4 41 547-588 80-120 (190)
86 1jvn_A Glutamine, bifunctional 41.2 12 0.00041 42.7 2.7 27 556-583 68-94 (555)
87 3cne_A Putative protease I; st 39.6 17 0.00059 34.2 3.2 36 552-588 89-124 (175)
88 3r75_A Anthranilate/para-amino 38.4 14 0.00047 43.1 2.7 26 557-583 511-536 (645)
89 3nva_A CTP synthase; rossman f 36.9 11 0.00038 42.8 1.5 25 557-582 369-393 (535)
90 2ab0_A YAJL; DJ-1/THIJ superfa 36.8 28 0.00095 33.9 4.3 39 549-588 81-120 (205)
91 1gtd_A MTH169; synthetase, FGA 36.4 94 0.0032 26.2 7.0 59 5-64 9-74 (85)
92 1vq3_A Phosphoribosylformylgly 36.0 99 0.0034 26.9 7.1 62 3-64 20-88 (94)
93 1fy2_A Aspartyl dipeptidase; s 35.7 14 0.00048 37.0 1.9 37 547-584 93-129 (229)
94 1ug8_A Poly(A)-specific ribonu 35.6 20 0.0007 30.9 2.6 30 555-588 15-46 (87)
95 2vdj_A Homoserine O-succinyltr 34.9 35 0.0012 35.8 4.9 23 560-582 127-149 (301)
96 4hcj_A THIJ/PFPI domain protei 34.5 30 0.001 33.2 4.0 40 548-588 82-121 (177)
97 2h2w_A Homoserine O-succinyltr 30.7 47 0.0016 35.1 5.0 23 560-582 139-161 (312)
98 3ewn_A THIJ/PFPI family protei 29.5 53 0.0018 33.4 5.1 40 548-588 98-137 (253)
99 3ot1_A 4-methyl-5(B-hydroxyeth 28.5 53 0.0018 31.9 4.7 40 548-588 85-125 (208)
100 1t4a_A PURS; tetramer, complex 27.6 2.1E+02 0.0073 23.9 7.7 58 5-64 8-73 (84)
101 3er6_A Putative transcriptiona 26.8 54 0.0018 32.0 4.4 37 551-588 92-128 (209)
102 1u9c_A APC35852; structural ge 24.7 59 0.002 31.7 4.3 36 549-585 104-139 (224)
103 2yx5_A UPF0062 protein MJ1593; 24.5 99 0.0034 25.9 5.0 59 5-64 8-74 (83)
104 1rw7_A YDR533CP; alpha-beta sa 23.8 66 0.0022 32.1 4.5 36 549-585 113-148 (243)
105 3f5d_A Protein YDEA; unknow pr 23.7 53 0.0018 32.1 3.6 36 552-588 78-113 (206)
106 2fex_A Conserved hypothetical 23.7 36 0.0012 32.4 2.4 37 551-588 78-114 (188)
107 3noq_A THIJ/PFPI family protei 23.0 66 0.0023 32.0 4.3 39 549-588 79-117 (231)
108 3uk7_A Class I glutamine amido 22.6 69 0.0024 34.3 4.7 40 548-588 295-334 (396)
109 3mgk_A Intracellular protease/ 21.8 64 0.0022 31.5 3.8 39 549-588 79-117 (211)
110 2gjf_A Designed protein; proca 20.2 82 0.0028 25.6 3.6 27 429-455 49-75 (78)
No 1
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=100.00 E-value=2.5e-113 Score=1051.57 Aligned_cols=618 Identities=27% Similarity=0.467 Sum_probs=540.3
Q ss_pred EEEEcCCCCCChHHH---HHHhhcCCCCccEEEEEEEEEEecCCCCCHHHHHHHHHhhcCcccccccCCCcccCCCCcEE
Q psy2354 3 IIRYYSKPGIGAGEK---TKKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKDNSNVI 79 (749)
Q Consensus 3 ~~~~~~~~als~~~~---l~~i~~~~~~v~sv~te~~y~V~~~~~l~~~~~~~L~~LL~~~~~~~~~~~~s~~~~~~~~v 79 (749)
|++|.|.||||+|+. ++++++..+.|.+|+++|||+|++.++|++++.++|.|||+| .+..... ...+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~--~~~~~~~----~~~~~~~ 83 (1303)
T 3ugj_A 10 MEILRGSPALSAFRINKLLARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQY--GPALSSH----TPAGKLL 83 (1303)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHTTCCCCEEEEEEEEEEEESSCCCHHHHHHHHHHTCC--SCCCCCC----CCCSEEE
T ss_pred EEEeCCCccCCHHHHHHHHHHHHhcCCCccEEEEEEEEEEecCCCCCHHHHHHHHHHhcC--Ccccccc----CCCcceE
Confidence 788999999999998 888999888899999999999998899999999999999987 3322111 1135679
Q ss_pred EEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCccHHhhhhhe-eeecc--ccccCC---CC-------
Q psy2354 80 EVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSRAIITKIV-LAEDK--AKYYSH---PS------- 146 (749)
Q Consensus 80 eV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~~~~~~~~-llhDr--E~~y~~---P~------- 146 (749)
+|+|||||+||||||||+|||+|||+.|+||||+++|+|.+. +.+.++++++. ++||| |++|.. |.
T Consensus 84 ~v~pr~g~~spwss~a~~i~~~~gl~~v~rie~~~~~~~~~~-~~~~~~~~~~~~~l~d~m~e~~~~~~~~~~~lf~~~~ 162 (1303)
T 3ugj_A 84 LVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYIEAS-TLTAEQWRQVAAELHDRMMETVFSSLTDAEKLFIHHQ 162 (1303)
T ss_dssp EEEECTTCCCHHHHHHHHHHHHTTCTTEEEEEEEEEEEEECT-TCCHHHHHHHHHHTSCTTTEEEESSGGGGGGGGCCCC
T ss_pred EEEcCCCcCChhHHHHHHHHHHcCCcccceEEEEEEEEEecC-CCCHHHHHHHHHhcCCCCccEEecCchhhhhhcccCC
Confidence 999999999999999999999999988999999999999743 34556677788 99999 888754 11
Q ss_pred -CCCcccccCcC-ch-hHHhhccccCc-----------------------------------------------------
Q psy2354 147 -SPLQHPVDIQK-GN-VLKEIVEPVGA----------------------------------------------------- 170 (749)
Q Consensus 147 -~pl~~~V~i~~-g~-aLe~~N~eLGL----------------------------------------------------- 170 (749)
+|+.+ ||+++ |+ +|+++|+++||
T Consensus 163 p~~~~~-v~~~~~~~~~L~~~~~~~gLaL~~~e~~~i~~~f~~lgR~Pt~~El~~~~~~wSEHCrhk~f~~~~~id~~~~ 241 (1303)
T 3ugj_A 163 PAPVSS-VDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQ 241 (1303)
T ss_dssp CCCCCB-CCHHHHTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSCCBHHHHHHHHHHTSHHHHCHHHHSEEEETTEEE
T ss_pred CCceeE-EeCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccccCCceEEcCccc
Confidence 56999 99999 99 99999999998
Q ss_pred -------------------------------------------------------eEEee--------------------
Q psy2354 171 -------------------------------------------------------VVFTE-------------------- 175 (749)
Q Consensus 171 -------------------------------------------------------~~~~~-------------------- 175 (749)
++||+
T Consensus 242 ~~~l~~~i~~t~~~~~~~~~~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~e~~~v~fK~ETHNHPsaIePf~GAaTGvG 321 (1303)
T 3ugj_A 242 PKSLFKMIKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSG 321 (1303)
T ss_dssp SSCHHHHHHHHHHHCCTTEEECSSSSSEEEEEEEEEEEEECTTTCBEEEEEEEEEEEEEEEECHHHHHHCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCCCcEEEEecCccEEeeecccccccccCCccccccccceeEEEEEEeccCCCCccCCcCcccceeE
Confidence 23344
Q ss_pred --------------------eeeecCCCCCCccc-c--cccCcccccc------------------cCCccccccee---
Q psy2354 176 --------------------SFLLGDPSISTLEL-W--GAEYQENNAL------------------LCKPLHCKTLR--- 211 (749)
Q Consensus 176 --------------------~~~~~~l~~p~~~~-w--~~~~p~~~a~------------------fg~p~~~g~~r--- 211 (749)
+||||+|++|++.+ | .+++|.|+++ ||+|+|+||+|
T Consensus 322 G~iRD~~~~G~GarPiA~~~~~~~~~lr~~~~~~p~e~~~g~p~~~~~~~~i~~~g~~G~s~ygN~~Gvp~V~G~~~~~~ 401 (1303)
T 3ugj_A 322 GEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTYE 401 (1303)
T ss_dssp HHHHHHHTSTTCCEEEEEEEEEEESCCCCTTCCCTTCCCCCCCTTSCCHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECE
T ss_pred EEEEchhccCCCCEeeeeeeeeeeccccCCCCCCccccccCCchhccChhhhhhcccchHHHHHHhcCCCCcceEEEEEe
Confidence 99999999999999 9 5899999776 99999999983
Q ss_pred ------------------eEE----------------------EEeeCCccccccccc--cccccCCCCccCCCCccccC
Q psy2354 212 ------------------MIS----------------------AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRG 249 (749)
Q Consensus 212 ------------------m~~----------------------v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~g 249 (749)
|++ |++||||||||+||+ ||+.+++.++++||++||+|
T Consensus 402 ~~~~~~~~~~~~g~~kp~v~~~gvG~i~~~~~~~~~~~~Gd~Iiv~Gg~tgr~G~gGaa~sS~~~~~~~~~~~~~~VQ~g 481 (1303)
T 3ugj_A 402 EKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRD 481 (1303)
T ss_dssp EEEEETTEEEEEECSSCEEEEEEEEEECGGGSSCCCCCTTCEEEEEECCBCTTCC-----------------CGGGCCCC
T ss_pred eeccccccccccccCCceeEEEEEEEEehHHcccccCCCCCEEEEECCCCCcccCcHHHHhHHhhcccccccCchhhccC
Confidence 333 999999999999999 88998888788999999999
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCcccccccccccccC--CCceEEecccccCCCCcChhhhcccccccccc
Q psy2354 250 DPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNA 327 (749)
Q Consensus 250 np~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~ 327 (749)
||+|||++|+||++|++++ +.++|.+|||+|+||+++++.||++. +|++|++++||+++++|+|+|||++||||||+
T Consensus 482 ~p~~ek~~~~li~~~lel~-~~~~V~a~~D~t~GGL~~~l~Ema~~sgvG~~Idld~vP~~~~gl~p~ei~~sesqerml 560 (1303)
T 3ugj_A 482 NPEMERRCQEVIDRCWQLG-DANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYV 560 (1303)
T ss_dssp CHHHHHHHHHHHHHHHTTG-GGCCEEEEEECCTTTHHHHHHHHHHHTTCEEEEEGGGSCBSCTTCCHHHHHHCCCSSEEE
T ss_pred CHHHHHHHHHHHHHHHHHh-ccCCeeEEEECCCcHHHHHHHHHHHHcCCeEEEEhhhCCCCccCCCHHHHHhCcCcceEE
Confidence 9999999999999999999 99999999999999999999999985 79999999999999999999999999999999
Q ss_pred cccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccccCCCCCCCCcccccchhhhhcCCCcc-----------
Q psy2354 328 LLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQK----------- 396 (749)
Q Consensus 328 l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~~~~~~~~~~~~vdlp~~~l~~~~p~~----------- 396 (749)
++|+|++.+.|.++|+++++++++||++|+++++++.+.. .++.++|||+++|++++|++
T Consensus 561 ~~V~pe~~~~~~~~~~~~g~~a~vIG~Vt~~~~v~l~~~~---------~g~~v~dlp~~~L~~~~p~~~~~~~~~~~~~ 631 (1303)
T 3ugj_A 561 LAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDNH---------FDNQPIDLPLDVLLGKTPKMTRDVQTLKAKG 631 (1303)
T ss_dssp EEECGGGHHHHHHHHHHHTCCEEEEEEEESSCEEEEEETT---------TTEEEEEEEHHHHTCCCCCCEEEECCCCCCC
T ss_pred EEECHHHHHHHHHHHHHcCCCeEEEEEEecCCeEEEEECC---------CCeEEEecchhhhcCCCCceeccccccCccc
Confidence 9999999999999999999999999999999999998854 47788888888888888765
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 632 ~~~~~~~~~~~~~l~~vL~~pnvaSK~~l~~~~D~~V~g~tv~~~~vGp~q~p~~DaAVi~~~~~~~~gla~s~g~~p~~ 711 (1303)
T 3ugj_A 632 DALNRADITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPV 711 (1303)
T ss_dssp CCCCCTTCCHHHHHHHHTTSTTTSCCHHHHTTSCSCTTSCEEECSEETTTTEECCSSEEEESSTTCSCEEEEEEEECGGG
T ss_pred cccCcCcCCHHHHHHHHhcCCcccchhhHHHhcCcccCcceeeeccccCCCCCCCCeEEEEEeCCCCeEEEEEEecCCCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 712 ~~~dP~~ga~~AVaealsnlaA~Ga~pl~~v~lsln~~~~~g~P~~~~~L~~a~~g~~~d~c~~lgvpiiGGkdSlsn~t 791 (1303)
T 3ugj_A 712 ALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKT 791 (1303)
T ss_dssp GGTCHHHHHHHHHHHHHHHHTTSCCCSGGGCEEEEEEECBTTSTTHHHHHHHHHHHHHTTHHHHHTCEEEEEEEECBCEE
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCccHHHeEeecccccccCCCchHHHHHHHHHHHHHHHHHHcCCCeeeccccCccce
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2354 397 -------------------------------------------------------------------------------- 396 (749)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (749)
T Consensus 792 ~~~~~g~~~~v~~P~TlvitavG~v~dv~~~vt~~~k~~Gd~LilV~lg~~~~~LGGS~la~~~g~~g~~~P~vd~~~~l 871 (1303)
T 3ugj_A 792 RWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTEDNALLLIDLGKGHNALGATALAQVYRQLGDKPADVRDVAQL 871 (1303)
T ss_dssp EECCC--CEEEECCCEEEEEEEEEESCGGGCCCSCCCCSSEEEEEEETTTTCCCCTTSHHHHHTTCCCSCCCCCCCHHHH
T ss_pred ecccCCCcCccCCCCceEEEEEEECCCcCcccCcccCCCCCEEEEEECCCCCCCccHHHHHHHhCcccCCCCCCCCHHHH
Confidence
Q ss_pred ---------------------------------ccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHH
Q psy2354 397 ---------------------------------MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLE 443 (749)
Q Consensus 397 ---------------------------------MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~ 443 (749)
|||++++|++|+++.. ..++++.||+|++|.|++|++++.+++++
T Consensus 872 k~~~~~v~~li~~G~v~AahDvSdGGLa~aL~Ema~as~vG~~Idl~~i--p~~~~~~LF~E~~G~vv~V~~~~~~~v~~ 949 (1303)
T 3ugj_A 872 KGFYDAMQALVAARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDIAAL--GDDHLAALFNEELGGVIQVRAEDRDAVEA 949 (1303)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCTTHHHHHHHHHHHHHTSEEEEECGGG--CSCHHHHHHCCCSEEEEEEEGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCChHHHHHHHHHHhCCceEEEEecCC--CCchhHHHhCCCCCeEEEEEHHHHHHHHH
Confidence 9999999999999743 23568899999999999999999999999
Q ss_pred HHHHcCCC--eeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcc
Q psy2354 444 QFKAANVS--CKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ 521 (749)
Q Consensus 444 ~~~~~gv~--~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~ 521 (749)
+++++|++ +++||+|++ + +.++|.++|+.+++.++++|+++|++|||+||++|+||.|+++|++.+.+..+|+++
T Consensus 950 ~l~~~gi~~~a~~IG~V~~-~--~~l~i~~~g~~~~~~~~~~l~~~w~~ts~~~~~~~~~~~~~~~e~~~~~~~~~p~~~ 1026 (1303)
T 3ugj_A 950 LLAQYGLADCVHYLGQALA-G--DRFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLN 1026 (1303)
T ss_dssp HHHHTTCGGGEEEEEEEES-S--SEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTCTTCCCSC
T ss_pred HHHhCCCCCceEEEEEEcC-C--CcEEEEECCEEEEEccHHHHHHHHHHHHHHhhccccCchhhHHhhhhhccccCCCcc
Confidence 99999998 799999998 6 789999999999999999999999999999999999999999999998776666542
Q ss_pred ----cCC--------------Ccc-------------------------------ccc--cccC---C---------Ccc
Q psy2354 522 ----YQP--------------VRD-------------------------------DIV--GATL---G---------KKD 538 (749)
Q Consensus 522 ----f~p--------------PkV-------------------------------Dl~--~~sL---d---------ygD 538 (749)
|++ ||| |+. +.+| | |||
T Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~d~lvlPGGfSygD 1106 (1303)
T 3ugj_A 1027 VKLSFDINEDIAAPYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGD 1106 (1303)
T ss_dssp CBCSSCTTCCTTHHHHTTTCCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCGGGCSEEEECCSCGGGG
T ss_pred ccccccccccccccccccCCCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccHhhCCEEEECCCCcchh
Confidence 332 455 111 1223 2 999
Q ss_pred cccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhcc-CccccCcCCcCcccccccccccCCCcceeeeEE
Q psy2354 539 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL-GWFSVSTQDKNNLVTDVMLSHNNSERFECRYST 617 (749)
Q Consensus 539 vlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~-~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~ 617 (749)
+++++++|+.++++|+.++++|.+|+.++|+|+||||||||+|+.+ ||+| |. ++|| +|++|.|+||||||++
T Consensus 1107 ~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllP---g~--~~~p--~l~~N~s~~f~~r~~~ 1179 (1303)
T 3ugj_A 1107 VLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIP---GS--ELWP--RFVRNHSDRFEARFSL 1179 (1303)
T ss_dssp TTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGST---TC--TTCC--EEECCTTSSCEEEEEE
T ss_pred hhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCC---CC--CCCC--eEecCCCCCeEEeCeE
Confidence 9999999999999999999999999999999999999999999988 9999 55 6899 9999999999999999
Q ss_pred EEecCCCcccccCCCCceeeEEeecccceeeEe
Q psy2354 618 VKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGA 650 (749)
Q Consensus 618 V~I~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~ 650 (749)
|+|++++|+|+++|+|+++||||+|||||+.+.
T Consensus 1180 ~~v~~~~s~~~~~~~g~~~~i~vaHgEG~~~~~ 1212 (1303)
T 3ugj_A 1180 VEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR 1212 (1303)
T ss_dssp EEECCCSCGGGTTCTTCEEEEEEEESSCEEECS
T ss_pred EEECCCCChhhhccCCCEEeeeeEeCCCCeeeC
Confidence 999999999999999999999999999998764
No 2
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=100.00 E-value=8.6e-42 Score=404.69 Aligned_cols=380 Identities=19% Similarity=0.199 Sum_probs=272.3
Q ss_pred hHHhhccc--cCc--eEEeeeeeecCCCCCCcccccccCcc-cccc----cCCccccccee---------eEE-------
Q psy2354 160 VLKEIVEP--VGA--VVFTESFLLGDPSISTLELWGAEYQE-NNAL----LCKPLHCKTLR---------MIS------- 214 (749)
Q Consensus 160 aLe~~N~e--LGL--~~~~~~~~~~~l~~p~~~~w~~~~p~-~~a~----fg~p~~~g~~r---------m~~------- 214 (749)
.-..+|.- +|- +.++.+|+++++.-|. ..|-+...- -++. ||.|+|.|.+. ++.
T Consensus 103 v~~~l~Di~amGA~P~~~l~~l~~~~~~~~~-~~~~l~~~~~Gi~~~~~~~G~~lvgG~t~~~~~~~~~~~i~~~~vG~v 181 (725)
T 3ac6_A 103 VGGILRDIMSMGARPIALLDSLRFGPPEEAR-SRYLLKGVVSGIAFYGNAIGVPTVGGDLYFHEGYRENPLVNAMCLGLL 181 (725)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEESCTTSHH-HHHHHHHHHHHHHHHHHHHTCCEEEEEEEECGGGSSSCEEEEEEEEEE
T ss_pred HhhhhhhhhccCChhHhheeeEEcCCCCCcc-HHHHHHHHHHHHHHHHHHhCCCeeEEEEEEeCCcCCCceEEEEEEEEe
Confidence 33444444 444 7788899998875442 122111111 1222 89999999876 111
Q ss_pred ----------------EEeeCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHHHHHHHHHhCCCCCCCEEE
Q psy2354 215 ----------------AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIES 276 (749)
Q Consensus 215 ----------------v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~ 276 (749)
+++|+|+|++|+||+ ++....+. .+.++++||+|||+|+|++ +++|+++. +.++|.+
T Consensus 182 ~~~~~~~~~a~~GD~ii~~G~~~g~~G~gg~~~~~~~~~~~-~~~~~p~v~~g~~~~e~~~---~~~~~~l~-~~~~i~a 256 (725)
T 3ac6_A 182 REEHLKRSRASLGRPIYYAGAKTGRDGIGGAAFASRELKEE-KAEDRPAVQVGDPFLGKLL---MEATLEAI-ELDLVEG 256 (725)
T ss_dssp EGGGCCCBCCCTTCEEEEEESCBCSCCC-----------------------CCCHHHHHHH---HHHHHHHH-HTTCEEE
T ss_pred ChhhcccCCCCCCCEEEEECCCCCCCcchHHHHHHHhhccc-cccCCcccccCCHHHHHHH---HHHHHHHH-hcCCeeE
Confidence 888999999999998 55433222 2358999999999999986 89999887 7899999
Q ss_pred EcccCcccccccccccccC--CCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEE
Q psy2354 277 IHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGV 354 (749)
Q Consensus 277 i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~ 354 (749)
|||+|+||++++++||++. +|++|+++++|+.+++|+|+|+|++|+||||+++|+|++.+.|+++|+++++++++||+
T Consensus 257 ~~Di~~gGL~~~l~ema~~sg~g~~i~l~~vP~~~~~~~~~e~~~se~q~~ll~~v~~~~~~~~~~~~~~~~~~~~vIG~ 336 (725)
T 3ac6_A 257 VQDMGAAGLTSSLSELAHKSGLGVELHLDLVPTREEGMTPEELLLSESQERMVLVPKEGKEKALEEVFGRWGLDCVPVAR 336 (725)
T ss_dssp EEECCTTHHHHHHHHHHHHTTSEEEEEGGGSCBSSSSCCHHHHHHCCCSSEEEEEECTTCHHHHHHHHHHTTCCEEEEEE
T ss_pred EEeCCCChHHHHHHHHHHhcCCeEEEEeccCCCCcCCCCHHHHHhcCCcCcEEEEEChHHHHHHHHHHHHcCCCEEEEEE
Confidence 9999999999999999984 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEeccccccCCCCCCCCcccccchhhhhcCCCccccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEc
Q psy2354 355 VTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQKMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVT 434 (749)
Q Consensus 355 ~T~~~~l~~~~~~f~~~~~~~~~~~~~vdlp~~~l~~~~p~~MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~ 434 (749)
+|+++++++.+ .++.++|+|++.|.+ +|++- . +.. .
T Consensus 337 vt~~~~~~~~~-----------~g~~~~d~~~~~l~~-~p~~~-~----------~~~----~----------------- 372 (725)
T 3ac6_A 337 TIPERVFRVLF-----------RGEVVAEVPTEALAE-APTYV-R----------VGR----E----------------- 372 (725)
T ss_dssp EESSSEEEEEE-----------TTEEEEEEEHHHHHS-CCCCC-C----------CCC----C-----------------
T ss_pred EEeCCeEEEEE-----------CCcEEEEcCHHHHhc-CCccc-c----------ccc----C-----------------
Confidence 99999998877 678899999998877 77621 0 000 0
Q ss_pred cCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcc
Q psy2354 435 NENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVT 514 (749)
Q Consensus 435 ~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~ 514 (749)
+...+. +...++. . .
T Consensus 373 ~~~~~~----~~~~~~~--------~-~---------------------------------------------------- 387 (725)
T 3ac6_A 373 DPEVRR----LRETPIP--------P-L---------------------------------------------------- 387 (725)
T ss_dssp CHHHHH----HHTSCCC--------C-C----------------------------------------------------
T ss_pred cccccc----ccccccC--------C-C----------------------------------------------------
Confidence 000000 0000000 0 0
Q ss_pred cCCCCcccCCCccccccccCCCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCc
Q psy2354 515 RIGPKYQYQPVRDDIVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDK 594 (749)
Q Consensus 515 ~~~p~~~f~pPkVDl~~~sLdygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~ 594 (749)
...+++.+.+.+.+|+ || .+.||..
T Consensus 388 --------------------------------------~~~~~~~~~~~l~~p~-----v~-------sK~~i~~----- 412 (725)
T 3ac6_A 388 --------------------------------------EADPQEVLRRLLASPN-----LA-------SREAVYE----- 412 (725)
T ss_dssp --------------------------------------CCCHHHHHHHHHTSTT-----TS-------CCHHHHT-----
T ss_pred --------------------------------------ccCHHHHHHHHhcCCC-----cc-------CchhHHH-----
Confidence 0013455566666666 44 4667762
Q ss_pred CcccccccccccCCCcceeeeEEEEecCCCcccccC-CCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHH
Q psy2354 595 NNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRN-LENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAV 673 (749)
Q Consensus 595 ~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~g-m~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV 673 (749)
||++ +| ...++..+| -+.+++++. + ...+.++|+|++|+++.+|||+||+.||
T Consensus 413 ---------------~~D~---~v---~~~tv~~pg~~DaaVi~~~---~--~~~~la~s~d~~~~~~~~dP~~~g~~AV 466 (725)
T 3ac6_A 413 ---------------RYDH---QV---GTRTALLPGKGDAAVLWIK---G--TRLGVAAKVDQNPRYSRLHPRLGAMHAL 466 (725)
T ss_dssp ---------------TCCC---CB---CSSEEECCSCCSSEEEEET---T--SSEEEEEEEECCHHHHHHCHHHHHHHHH
T ss_pred ---------------hhcc---cc---CCceeecCCCCceEEEEeC---C--CCeEEEEEEcCCCCeeeeCHHHHHHHHH
Confidence 2322 11 233445556 567777762 1 2357999999999999999999999999
Q ss_pred HHHhhhcccccCCCccccccccccccccCCCCChH---HHHHHHHHHHHHHHHcCccccccccCccceEe
Q psy2354 674 AEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGA---ALFDACQAMCDIMGEFGIAVDGGKDSLSMAAR 740 (749)
Q Consensus 674 ~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~---~l~~a~~gl~d~~~~lg~PvvgGkdSls~~~~ 740 (749)
+||++||+|+|+.|+. +.+++|| ++|++++ +|.++++||.|+|+++|+|+||||+||||++.
T Consensus 467 aeav~di~a~Ga~Pl~-~~~~l~~----g~~~~~~~~~~l~~~v~Gi~~a~~~~gv~ivgG~ts~~~~~~ 531 (725)
T 3ac6_A 467 AEACRNVSVVGAKPLA-YTDGLNL----GSPETPEGYHELAETIAGLKEASEALGVPVVSGNVSLYNESG 531 (725)
T ss_dssp HHHHHHHHHTTCEEEE-EEEEEEC----SCSSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCEET
T ss_pred HHHHHHHHHcCCcceE-EEEEEEc----CCCCChhHHHHHHHHHHHHHHHHHHhCCCeeeeeeeecCCCC
Confidence 9999999999999988 6666666 6788874 67889999999999999999999999999873
No 3
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=100.00 E-value=1.3e-39 Score=378.95 Aligned_cols=306 Identities=17% Similarity=0.156 Sum_probs=231.7
Q ss_pred EEeeCCccccccccc--cccccCCCCccCCCCccccCChHHHHHHHHHHHHHHhCCCCCCCEEEEcccCccccccccccc
Q psy2354 215 AREKCPVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEI 292 (749)
Q Consensus 215 v~~Gg~~~r~G~gG~--Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El 292 (749)
|++|++|||+|+||+ ++...... ..++++||++||+|||++ +++|+++. +.++|.++||+|+||+.+++.||
T Consensus 188 il~G~~tg~~G~~g~~~~~~~~~~~--~~~~~~v~~~~~~~e~~~---~~~~~~l~-~~~~i~a~~Dis~gGL~~~l~em 261 (615)
T 1vk3_A 188 VIFGGATGRDGIHGASFASEDLTGD--KATKLSIQVGDPFAEKML---IEAFLEMV-EEGLVEGAQDLGAGGVLSATSEL 261 (615)
T ss_dssp EEEESCBCSCC------------------CGGGCCCCCHHHHHHH---HHHHHHHH-HHTCCSEEEECCTTHHHHHHHHH
T ss_pred EEECCCCCCCcccHHHHHHHHhhcc--cccccccCcCCHHHHHHH---HHHHHHHH-hcCCeeEEEeCCCccHHHHHHHH
Confidence 889999999999998 33322211 127889999999999987 77887776 77899999999999999999999
Q ss_pred ccC--CCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEEEeccccc
Q psy2354 293 VEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKY 370 (749)
Q Consensus 293 ~~~--~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~~~~~f~~ 370 (749)
+.. +|++|+++++|+.+++|+|+|+|++|+||||+++|+|++.+.|+++|+++++++++||++|+++++++.+
T Consensus 262 a~~sg~G~~Idl~~vP~~~~~~~~~e~l~sesq~r~l~~v~~~~~~~~~~~~~~~g~~~~vIG~Vt~~~~l~v~~----- 336 (615)
T 1vk3_A 262 VAKGNLGAIVHLDRVPLREPDMEPWEILISESQERMAVVTSPQKASRILEIARKHLLFGDVVAEVIEEPVYRVMY----- 336 (615)
T ss_dssp HHHTTCEEEEEGGGSCBSSTTCCHHHHHHCCCSSEEEEEECGGGHHHHHHHHHHTTCEEEEEEEEESSCEEEEEE-----
T ss_pred HHhCCceEEEEecccCCCCCCCCHHHHHHcCCCCeEEEEEcHHHHHHHHHHHHHcCCCEEEEEEEEeCCeEEEEE-----
Confidence 874 8999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cCCCCCCCCcccccchhhhhcCCCccccccCCccEEEEcCCCCCCCcHHHHhhccccccEEEEccCCHHHHHHHHHHcCC
Q psy2354 371 YSNPSSPLQHPVDIQMELICGKMPQKMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANV 450 (749)
Q Consensus 371 ~~~~~~~~~~~vdlp~~~l~~~~p~~MAfag~~G~~I~L~~~~~~~~p~e~LfSEe~G~VleV~~~~~~~v~~~~~~~gv 450 (749)
.++.++|+|++.| .++|++ .+ +.. .| + . ... +
T Consensus 337 ------~g~~~~d~~~~~l-~~~~~~-~~----------~~~----~~------~-~-------~~~------------~ 368 (615)
T 1vk3_A 337 ------RNDLVMEVPVQLL-ANAPEE-DI----------VEY----TP------G-K-------IPE------------F 368 (615)
T ss_dssp ------TTEEEEEEEHHHH-HSCCCC-CC----------CCC----CC------C-S-------CCC------------C
T ss_pred ------CCeEEEEecHHHH-hcCchh-hc----------ccc----Cc------c-c-------ccc------------c
Confidence 6778999999988 877762 11 100 00 0 0 000 0
Q ss_pred CeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcccCCCccccc
Q psy2354 451 SCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQPVRDDIV 530 (749)
Q Consensus 451 ~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~f~pPkVDl~ 530 (749)
.. . . + + .|.
T Consensus 369 --------~~-~--~-l------------~----------------------~~s------------------------- 377 (615)
T 1vk3_A 369 --------KR-V--E-F------------E----------------------EVN------------------------- 377 (615)
T ss_dssp --------CC-C--C-C------------E----------------------ECC-------------------------
T ss_pred --------Cc-c--c-c------------c----------------------ccC-------------------------
Confidence 00 0 0 0 0 000
Q ss_pred cccCCCcccccchHHHHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCc
Q psy2354 531 GATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSER 610 (749)
Q Consensus 531 ~~sLdygDvlgsgkgwa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~r 610 (749)
++.+.+-|+|.
T Consensus 378 --------------------------k~~~~~~~D~~------------------------------------------- 388 (615)
T 1vk3_A 378 --------------------------AREVFEQYDHM------------------------------------------- 388 (615)
T ss_dssp --------------------------HHHHHHTTTCC-------------------------------------------
T ss_pred --------------------------cccceecCCCC-------------------------------------------
Confidence 00111111111
Q ss_pred ceeeeEEEEecCCCcccccCCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccc
Q psy2354 611 FECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKD 690 (749)
Q Consensus 611 fEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~ 690 (749)
| +..++..+|-+.+++.+. + ..+.++|+|++|+++.+|||+||+.||+||+|||+|+|+.|+.
T Consensus 389 -------v---~~~~~~~pg~DaaV~~~~---~---~~~~~~t~d~~~~~~~~dP~~~g~~Avaealsdl~A~Ga~p~~- 451 (615)
T 1vk3_A 389 -------V---GTDTVVPPGFGAAVMRIK---R---DGGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLA- 451 (615)
T ss_dssp -------B---STTSSSCGGGSCEEEEEE---T---TEEEEEEEECCHHHHTTCHHHHHHHHHHHHHHHHHHTTCEEEE-
T ss_pred -------C---CCceeeccCCCeEEEEEc---C---CcEEEEEecCCCcccccCHHHHHHHHHHHHHHHHHHcCCccce-
Confidence 0 112233344455566553 2 3689999999999999999999999999999999999999988
Q ss_pred cccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCccceE
Q psy2354 691 VKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSMAA 739 (749)
Q Consensus 691 v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~~~ 739 (749)
+.+++||+|+ .+|+ . +|+++++|+.|+|++||+|++||||||++++
T Consensus 452 ~~~~l~~~~~-~~~~-~-~l~~~~~G~~~~~~~~g~~~igG~~S~~~~~ 497 (615)
T 1vk3_A 452 ITNCVNYGDP-DVDP-V-GLSAMMTALKNACEFSGVPVASGNASLYNTY 497 (615)
T ss_dssp EEEEEECSCT-TTCH-H-HHHHHHHHHHHHHHHHTCCEEEEEEECCCEE
T ss_pred eEEEEecCCC-CCch-H-HHHHHHHHHHHHHHHcCCCcccccccccCcC
Confidence 8888888776 3455 3 7999999999999999999999999999876
No 4
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=100.00 E-value=5.2e-36 Score=368.39 Aligned_cols=370 Identities=21% Similarity=0.246 Sum_probs=262.3
Q ss_pred CcccccccccccccCCCceE-Eeccccc----------CCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCe
Q psy2354 281 GAGGNGNVLKEIVEPVGAVV-FTESFLL----------GDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPV 349 (749)
Q Consensus 281 GaGG~~na~~El~~~~G~~i-~l~~v~~----------~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~ 349 (749)
|+++++|.++ ++.+||.+ .++..+. ..|.|+..-|+.-.. ++ +.+-..+.+-.+
T Consensus 380 G~s~ygN~~G--vp~V~G~~~~~~~~~~~~~~~~~~g~~kp~v~~~gvG~i~~----------~~---~~~~~~~~Gd~I 444 (1303)
T 3ugj_A 380 GGAAFNNEFG--RPALTGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIRA----------DH---VQKGEIVVGAKL 444 (1303)
T ss_dssp HHHHHHHHHT--CCEEEEEEEECEEEEEETTEEEEEECSSCEEEEEEEEEECG----------GG---SSCCCCCTTCEE
T ss_pred hHHHHHHhcC--CCCcceEEEEEeeeccccccccccccCCceeEEEEEEEEeh----------HH---cccccCCCCCEE
Confidence 4899999999 88788877 3442221 468888888876542 21 111125678899
Q ss_pred EEEEEEeCCCCE---EEEeccccccC-CCCCCCCcccccchhhhh----------c-CCC-----cc-----------cc
Q psy2354 350 QFVGVVTGSNKI---VLAEDKAKYYS-NPSSPLQHPVDIQMELIC----------G-KMP-----QK-----------MA 398 (749)
Q Consensus 350 ~vVG~~T~~~~l---~~~~~~f~~~~-~~~~~~~~~vdlp~~~l~----------~-~~p-----~~-----------MA 398 (749)
.++|--|++.++ ++++....+.+ ..+....+..|.+|+.++ + ..+ ++ ||
T Consensus 445 iv~Gg~tgr~G~gGaa~sS~~~~~~~~~~~~~~VQ~g~p~~ek~~~~li~~~lel~~~~~V~a~~D~t~GGL~~~l~Ema 524 (1303)
T 3ugj_A 445 IVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELV 524 (1303)
T ss_dssp EEEECCBCTTCC-----------------CGGGCCCCCHHHHHHHHHHHHHHHTTGGGCCEEEEEECCTTTHHHHHHHHH
T ss_pred EEECCCCCcccCcHHHHhHHhhcccccccCchhhccCCHHHHHHHHHHHHHHHHHhccCCeeEEEECCCcHHHHHHHHHH
Confidence 999998887776 33332211111 011123445566676652 1 111 11 99
Q ss_pred ccCCccEEEEcCC---CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEEC--
Q psy2354 399 FAGLSGMTVDIPS---DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVN-- 472 (749)
Q Consensus 399 fag~~G~~I~L~~---~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~-- 472 (749)
-++++|++|++++ ++.+++|+|+++||+| +|++.|+++++++++++|+++++++.+||+||+ + +++++.++
T Consensus 525 ~~sgvG~~Idld~vP~~~~gl~p~ei~~sesqerml~~V~pe~~~~~~~~~~~~g~~a~vIG~Vt~-~--~~v~l~~~~~ 601 (1303)
T 3ugj_A 525 SDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGDATE-E--QHLSLHDNHF 601 (1303)
T ss_dssp HHTTCEEEEEGGGSCBSCTTCCHHHHHHCCCSSEEEEEECGGGHHHHHHHHHHHTCCEEEEEEEES-S--CEEEEEETTT
T ss_pred HHcCCeEEEEhhhCCCCccCCCHHHHHhCcCcceEEEEECHHHHHHHHHHHHHcCCCeEEEEEEec-C--CeEEEEECCC
Confidence 9999999999985 5668999999999999 799999999999999999999999999999998 7 88999987
Q ss_pred CEEEEEecHHHHHHHhhhhhHHHHHhhcccchhhHhhhhhcccCCCCcc--cCCCccccccccCCCcccccchHHHHHhh
Q psy2354 473 NEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ--YQPVRDDIVGATLGKKDALGSAKGWAASL 550 (749)
Q Consensus 473 g~~v~~~~~~~L~~~W~~ts~~~~~l~~np~~~~~e~~~~~~~~~p~~~--f~pPkVDl~~~sLdygDvlgsgkgwa~si 550 (749)
|+.++++|+++|.. ..|.|+ ...|..... .++.
T Consensus 602 g~~v~dlp~~~L~~-----------------------------~~p~~~~~~~~~~~~~~--~~~~-------------- 636 (1303)
T 3ugj_A 602 DNQPIDLPLDVLLG-----------------------------KTPKMTRDVQTLKAKGD--ALNR-------------- 636 (1303)
T ss_dssp TEEEEEEEHHHHTC-----------------------------CCCCCEEEECCCCCCCC--CCCC--------------
T ss_pred CeEEEecchhhhcC-----------------------------CCCceeccccccCcccc--ccCc--------------
Confidence 99999999999965 356554 211110000 0000
Q ss_pred ccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEec-CCCccccc
Q psy2354 551 LLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIM-KSPAIMLR 629 (749)
Q Consensus 551 L~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~-~s~Sv~l~ 629 (749)
....+.+.+.+.+.+++ || ++.||.. .+ . +.+... +|+-+ -.| .-++
T Consensus 637 -~~~~~~~~l~~vL~~pn-----va-------SK~~l~~---~~----D--~~V~g~---------tv~~~~vGp-~q~p 684 (1303)
T 3ugj_A 637 -ADITIADAVKRVLHLPT-----VA-------EKTFLVT---IG----D--RTVTGM---------VARDQMVGP-WQVP 684 (1303)
T ss_dssp -TTCCHHHHHHHHTTSTT-----TS-------CCHHHHT---TS----C--SCTTSC---------EEECSEETT-TTEE
T ss_pred -CcCCHHHHHHHHhcCCc-----cc-------chhhHHH---hc----C--cccCcc---------eeeeccccC-CCCC
Confidence 01247788888898888 65 5778772 11 0 111000 11100 000 0123
Q ss_pred CCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHH
Q psy2354 630 NLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAA 709 (749)
Q Consensus 630 gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~ 709 (749)
+-+.+++.+ .+ +..++.++|+|++|+++++|||+||++||+||+|||+|+|+.|++++++|+||||++++|+++++
T Consensus 685 ~~DaAVi~~--~~--~~~~gla~s~g~~p~~~~~dP~~ga~~AVaealsnlaA~Ga~pl~~v~lsln~~~~~g~P~~~~~ 760 (1303)
T 3ugj_A 685 VADCAVTTA--SL--DSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAG 760 (1303)
T ss_dssp CCSSEEEES--ST--TCSCEEEEEEEECGGGGGTCHHHHHHHHHHHHHHHHTTSCCCSGGGCEEEEEEECBTTSTTHHHH
T ss_pred CCCeEEEEE--eC--CCCeEEEEEEecCCCccccCHHHHHHHHHHHHHHHhhcCCCccHHHeEeecccccccCCCchHHH
Confidence 444555532 22 23468999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHcCccccccccCccceEecCC----ceeeCC
Q psy2354 710 LFDACQAMC-DIMGEFGIAVDGGKDSLSMAARVGK----ETVKAP 749 (749)
Q Consensus 710 l~~a~~gl~-d~~~~lg~PvvgGkdSls~~~~~~~----~~v~~p 749 (749)
|+++++||. |+|++||+|+|||||||||+++|++ +.|++|
T Consensus 761 L~~a~~g~~~d~c~~lgvpiiGGkdSlsn~t~~~~~g~~~~v~~P 805 (1303)
T 3ugj_A 761 LYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSP 805 (1303)
T ss_dssp HHHHHHHHHTTHHHHHTCEEEEEEEECBCEEEECCC--CEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCeeeccccCccceecccCCCcCccCCC
Confidence 999999999 9999999999999999999998853 246655
No 5
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=99.02 E-value=5.1e-11 Score=138.78 Aligned_cols=181 Identities=15% Similarity=0.084 Sum_probs=119.9
Q ss_pred ccCCCceEEecccccCCCCcChhhhcccccccccccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCE---EEEecccc
Q psy2354 293 VEPVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKI---VLAEDKAK 369 (749)
Q Consensus 293 ~~~~G~~i~l~~v~~~~~~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l---~~~~~~f~ 369 (749)
++-+||++..+.-+...|.++..-++..+. ++. +..-..+.+-.+.++|..|+..++ .+....+.
T Consensus 143 vplvGG~t~~~~~y~~~p~~~~~~vG~v~~-~~~-----------~~~~~~~~GD~Iil~G~~tg~~G~~g~~~~~~~~~ 210 (615)
T 1vk3_A 143 VPTVGGELRISSLYAHNPLVNVLAAGVVRN-DML-----------VDSKASRPGQVIVIFGGATGRDGIHGASFASEDLT 210 (615)
T ss_dssp CCEEEEEEEECGGGTTCCEEEEEEEEEEET-TSC-----------CCSSCCSTTCEEEEEESCBCSCC------------
T ss_pred CCEeEEEEEEecCCCCCceEEEEEEEEEcH-HHc-----------cCccCCCCcCEEEEECCCCCCCcccHHHHHHHHhh
Confidence 333577777666666678888777776651 211 111123556678899987765333 33322221
Q ss_pred ccCCCCCCCCcccccchhhhh--------cCCC-----cc-----------ccccCCccEEEEcCC---CCCCCcHHHHh
Q psy2354 370 YYSNPSSPLQHPVDIQMELIC--------GKMP-----QK-----------MAFAGLSGMTVDIPS---DVTTSEVLELL 422 (749)
Q Consensus 370 ~~~~~~~~~~~~vdlp~~~l~--------~~~p-----~~-----------MAfag~~G~~I~L~~---~~~~~~p~e~L 422 (749)
.... .....+..+..++..+ ...+ +. ||.++++|++|++++ ++.+++|+++|
T Consensus 211 ~~~~-~~~~v~~~~~~~e~~~~~~~~~l~~~~~i~a~~Dis~gGL~~~l~ema~~sg~G~~Idl~~vP~~~~~~~~~e~l 289 (615)
T 1vk3_A 211 GDKA-TKLSIQVGDPFAEKMLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDMEPWEIL 289 (615)
T ss_dssp -----CGGGCCCCCHHHHHHHHHHHHHHHHHTCCSEEEECCTTHHHHHHHHHHHHTTCEEEEEGGGSCBSSTTCCHHHHH
T ss_pred cccc-cccccCcCCHHHHHHHHHHHHHHHhcCCeeEEEeCCCccHHHHHHHHHHhCCceEEEEecccCCCCCCCCHHHHH
Confidence 1100 0011122333333211 0111 11 999999999999974 34468999999
Q ss_pred hcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEECCEEEEEecHHHHHHHhh
Q psy2354 423 FAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWE 489 (749)
Q Consensus 423 fSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~g~~v~~~~~~~L~~~W~ 489 (749)
|||+| ||++.|++++.++|+++++++++++++||+|++ + +++++.++|+.++++++++|.+.|.
T Consensus 290 ~sesq~r~l~~v~~~~~~~~~~~~~~~g~~~~vIG~Vt~-~--~~l~v~~~g~~~~d~~~~~l~~~~~ 354 (615)
T 1vk3_A 290 ISESQERMAVVTSPQKASRILEIARKHLLFGDVVAEVIE-E--PVYRVMYRNDLVMEVPVQLLANAPE 354 (615)
T ss_dssp HCCCSSEEEEEECGGGHHHHHHHHHHTTCEEEEEEEEES-S--CEEEEEETTEEEEEEEHHHHHSCCC
T ss_pred HcCCCCeEEEEEcHHHHHHHHHHHHHcCCCEEEEEEEEe-C--CeEEEEECCeEEEEecHHHHhcCch
Confidence 99999 699999999999999999999999999999998 6 7899999999999999999966554
No 6
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=98.82 E-value=2.4e-09 Score=127.02 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=80.3
Q ss_pred ccccCCccEEEEcCC---CCCCCcHHHHhhcccc-ccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEEEEC
Q psy2354 397 MAFAGLSGMTVDIPS---DVTTSEVLELLFAEEL-GWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVN 472 (749)
Q Consensus 397 MAfag~~G~~I~L~~---~~~~~~p~e~LfSEe~-G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I~~~ 472 (749)
||.++++|++|++++ ++.+++|+|+||||+| ||++.|++++.++++++++++++++++||+|++ + +++++.++
T Consensus 272 ma~~sg~g~~i~l~~vP~~~~~~~~~e~~~se~q~~ll~~v~~~~~~~~~~~~~~~~~~~~vIG~vt~-~--~~~~~~~~ 348 (725)
T 3ac6_A 272 LAHKSGLGVELHLDLVPTREEGMTPEELLLSESQERMVLVPKEGKEKALEEVFGRWGLDCVPVARTIP-E--RVFRVLFR 348 (725)
T ss_dssp HHHHTTSEEEEEGGGSCBSSSSCCHHHHHHCCCSSEEEEEECTTCHHHHHHHHHHTTCCEEEEEEEES-S--SEEEEEET
T ss_pred HHHhcCCeEEEEeccCCCCcCCCCHHHHHhcCCcCcEEEEEChHHHHHHHHHHHHcCCCEEEEEEEEe-C--CeEEEEEC
Confidence 999999999999875 3457899999999999 799999999999999999999999999999998 7 78999999
Q ss_pred CEEEEEecHHHHHH
Q psy2354 473 NEPVLNEDLGTLFL 486 (749)
Q Consensus 473 g~~v~~~~~~~L~~ 486 (749)
|+.++++++.+|.+
T Consensus 349 g~~~~d~~~~~l~~ 362 (725)
T 3ac6_A 349 GEVVAEVPTEALAE 362 (725)
T ss_dssp TEEEEEEEHHHHHS
T ss_pred CcEEEEcCHHHHhc
Confidence 99999999999864
No 7
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=98.68 E-value=5.7e-09 Score=111.48 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=79.0
Q ss_pred cCCCCceeeEEeecccceeeEeeeccCCCCc----eeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCC
Q psy2354 629 RNLENSVLGVWVAHGEVMLRGAATSIGEQPI----KGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLP 704 (749)
Q Consensus 629 ~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~----~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P 704 (749)
.|-+.+++++ + + ...++|+|.++. +...|||.+++.||+++++||+|+|+.|+. .+++|+|| .+|
T Consensus 28 ~gdDaavi~~----~-~--~~lv~ttD~~~~~~~f~~~~~p~~~G~~ava~~lsDlaa~Ga~P~~---~~~~~~~p-~~~ 96 (311)
T 2yxz_A 28 PGDDAGGVWA----E-G--RAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLAKMGRPLG---FTLGLFLP-EDL 96 (311)
T ss_dssp TTSSSEEEEE----T-T--EEEEEEEEEEEHHHHCCTTCCHHHHHHHHHHHHHHHHHHTTEEEEE---EEEEEEEC-TTC
T ss_pred CCCCEEEEec----C-C--CeEEEEeCcCCCccccCCCCCHHHHHHHHHHHHHHHHHHcCChhhh---heeeEeCC-CCC
Confidence 3455667765 2 2 457888899988 788999999999999999999999998875 56678886 334
Q ss_pred CChHHHHHHHHHHHHHHHHcCccccccccCcc
Q psy2354 705 GEGAALFDACQAMCDIMGEFGIAVDGGKDSLS 736 (749)
Q Consensus 705 ~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls 736 (749)
+ .+.|.+.++||.++|+++|+|++||++|.+
T Consensus 97 ~-~~~l~~~~~Gi~~~~~~~g~~lvGG~t~~~ 127 (311)
T 2yxz_A 97 E-EGFVLELVRGAAEAAKRLGAFLLGGDTNRG 127 (311)
T ss_dssp B-HHHHHHHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred C-HHHHHHHHHHHHHHHHHcCCeEEceecCCC
Confidence 3 478999999999999999999999999864
No 8
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=98.67 E-value=1.2e-08 Score=109.29 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=92.0
Q ss_pred HHHHHHHHhCCCCCCCEEEEcccCccccccccccccc--CCCceEEecccccCCC--------CcChhhhcccccccccc
Q psy2354 258 NRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDP--------SISTLELWGAEYQENNA 327 (749)
Q Consensus 258 q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~--------~ms~~eI~~sEsQEr~~ 327 (749)
+++++..++. ...|.++||+.-||+..++.||+. .+|++|+++++|..+. +++|++. +++.+|+
T Consensus 181 ~~~~~~l~~~---~~~v~a~~DiS~GGL~~~L~e~a~~sgvg~~I~~~~iP~~~~~~~~~~~~~~~~l~~---~~~g~ll 254 (314)
T 3vti_C 181 NGLIEKLMTL---GEAIKVLRDPTRGGVAEVLYEISKMSGVGIKIYEEKLPVKESVKSACEFMGIDFLHL---ANEGKVV 254 (314)
T ss_dssp HHHHHHHGGG---GGGEEEEECCCTTHHHHHHHHHHHHHTCEEEEEGGGCCCCHHHHHHHHHHTCCGGGS---CCSSCCE
T ss_pred HHHHHHHHhc---cCCcEEEEeCCCcHHHHHHHHHHHHcCCeEEEehhcCCCCHHHHHHHHHhCCCHHHH---HhCCcEE
Confidence 3445555532 257999999999999999999984 5999999999998754 3566553 4567999
Q ss_pred cccCcccHHHHHHHHh--hcCCCeEEEEEEeCCCCEEEEeccccccCCCCCCCCcccccchhhhh
Q psy2354 328 LLCKPLHCKTLRMISA--REKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELIC 390 (749)
Q Consensus 328 l~v~~~~~~~~~~i~~--re~~~~~vVG~~T~~~~l~~~~~~f~~~~~~~~~~~~~vdlp~~~l~ 390 (749)
+.++|++.+.+.++++ +.++++++||++++.+++++.+.. .++.++|+|..-.+
T Consensus 255 ~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v~~~~~v~l~~~~---------g~~~~~~~p~~~~l 310 (314)
T 3vti_C 255 VVVERDYAEKALEIMKSHEYGKDAEIIGEVNDSKLVTINTIY---------GTSRIVDRPIGELL 310 (314)
T ss_dssp EEECGGGHHHHHHHHHTSTTCTTCEEEEEEESSSCEEEECTT---------SCEEECCCC-----
T ss_pred EEECHHHHHHHHHHHhhCcCCCCeEEEEEECCCCeEEEEeCC---------CCEEECCCCCCccc
Confidence 9999999999999999 789999999999888889887543 46778999876544
No 9
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=98.51 E-value=5.3e-08 Score=105.11 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=85.1
Q ss_pred CEEEEcccCccccccccccccc--CCCceEEecccccCCC--------CcChhhhcccccccccccccCcccHHHHHHHH
Q psy2354 273 PIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDP--------SISTLELWGAEYQENNALLCKPLHCKTLRMIS 342 (749)
Q Consensus 273 ~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~--------~ms~~eI~~sEsQEr~~l~v~~~~~~~~~~i~ 342 (749)
.|.++||+.-||+..++.||+. .+|++|+++++|..+. +++|++. +++.+|++.++|++.+.+.+++
T Consensus 215 ~v~a~~Dis~GGL~~~l~ema~~s~~g~~I~~~~iP~~~~~~~~~~~~~~~~l~~---~~~G~ll~~v~~~~~~~~~~~l 291 (338)
T 2z1e_A 215 NIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGISPYDV---ANEGKVVMVVAREYAEEALEAM 291 (338)
T ss_dssp GEEEEECCCTTHHHHHHHHHHHHHTCEEEEEGGGSCCCHHHHHHHHHHTCCGGGS---CCSSCCEEEECGGGHHHHHHHH
T ss_pred ceEEEEeCCCChHHHHHHHHHHhcCCeEEEEcccCCCCHHHHHHHHHcCCChhhc---cCCceEEEEECHHHHHHHHHHH
Confidence 6999999999999999999985 5899999999997653 2455443 4677999999999999999999
Q ss_pred hh--cCCCeEEEEEEeCCC--CEEEEeccccccCCCCCCCCcccccchhhh
Q psy2354 343 AR--EKCPVQFVGVVTGSN--KIVLAEDKAKYYSNPSSPLQHPVDIQMELI 389 (749)
Q Consensus 343 ~r--e~~~~~vVG~~T~~~--~l~~~~~~f~~~~~~~~~~~~~vdlp~~~l 389 (749)
++ .++++++||++|+.. ++.+.... .++.++|+|....
T Consensus 292 ~~~~~g~~~~~IG~v~~~~~~~v~i~~~~---------g~~~~~~~~~~~~ 333 (338)
T 2z1e_A 292 RKTEKGRNAAIIGEVIADYRGKVLLETGI---------GGKRFMEPPEGDP 333 (338)
T ss_dssp HTSSTTTTCEEEEEEESSSTTCEEEECTT---------SCEEECCCSSCCC
T ss_pred HhccCCCCeEEEEEEEeCCCCeEEEEecC---------CCEEECCCCCCCc
Confidence 88 589999999999654 68776432 4566778776543
No 10
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=98.44 E-value=1.4e-07 Score=102.50 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=75.1
Q ss_pred CCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCC-CChH
Q psy2354 630 NLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLP-GEGA 708 (749)
Q Consensus 630 gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P-~~~~ 708 (749)
|.+.+++++ ++++ .++|+|.++. ...|||..++.||+.++++|+|+|+.|+. +.++ ++|+ ++ .+.+
T Consensus 51 GdDaAvi~~----~~~~---lv~ttD~~~~-~~~~p~~~G~~ava~~lsDlaamGa~P~~-~l~~--l~~p--~~~~~~~ 117 (345)
T 2yyd_A 51 GDDAGVYEH----NGII---WVYTVDIITP-VVNDPYLWGAISTANALSDVYAMGGIPVN-ALAI--SCFN--NCELDIE 117 (345)
T ss_dssp --CCCEEEE----TTEE---EEEEEEEECC-SSSCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEE--EEEC--TTTCCHH
T ss_pred CCCeEEEEE----CCCe---EEEEeCCCCC-ccCCHHHHHHHHHHHHHHHHHHcCCchHH-Hhee--EeCC--CCCCCHH
Confidence 455667765 2333 6778888875 77899999999999999999999999886 4444 4444 44 4568
Q ss_pred HHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 709 ALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 709 ~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
.+.+.++||.++|+++|+|+|||+.+.+.
T Consensus 118 ~l~~i~~Gi~~~~~~~gv~lvGGdt~~~~ 146 (345)
T 2yyd_A 118 IFREVIRGALDKLREAKTVLLGGHTIDDK 146 (345)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHcCCEEEeeEcccCC
Confidence 89999999999999999999999988754
No 11
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=98.32 E-value=3.7e-07 Score=98.57 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=87.7
Q ss_pred CCCCEEEEcccCccccccccccccc--CCCceEEecccccCCC--------CcChhhhcccccccccccccCcccHHHHH
Q psy2354 270 NLNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDP--------SISTLELWGAEYQENNALLCKPLHCKTLR 339 (749)
Q Consensus 270 ~~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~--------~ms~~eI~~sEsQEr~~l~v~~~~~~~~~ 339 (749)
....|.++||++-||+..++.||+. .+|++|+++++|+.+. +++|++++ ++. +|++.++|++.+.+.
T Consensus 210 ~~~~v~a~~Dis~GGL~~~l~ema~~s~vg~~i~~~~iP~~~~~~~~~~~~~~~~~~~~-~~G--~ll~~v~~~~~~~~~ 286 (334)
T 2rb9_A 210 DIPGVKALRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFA-NEG--KLVIAVERNAAEQVL 286 (334)
T ss_dssp TCTTEEEEEECCTTHHHHHHHHHHHHHTCEEEEETTTCCCCHHHHHHHHHHCCCTTTSC-CSS--CEEEEECGGGHHHHH
T ss_pred hcCCeEEEEECCCccHHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHcCCCHHHHh-hcC--eEEEEEChHHHHHHH
Confidence 4567999999999999999999985 5899999999998643 45677765 554 699999999999999
Q ss_pred HHHhh--cCCCeEEEEEEeCCCCEEEEeccccccCCCCCCCCcccccchhh
Q psy2354 340 MISAR--EKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMEL 388 (749)
Q Consensus 340 ~i~~r--e~~~~~vVG~~T~~~~l~~~~~~f~~~~~~~~~~~~~vdlp~~~ 388 (749)
+++++ .++++++||++|+..++++.... .++.++|+|...
T Consensus 287 ~~l~~~~~g~~~~~IG~v~~~~~v~~~~~~---------g~~~~l~~p~~d 328 (334)
T 2rb9_A 287 AALHSHPLGKDAALIGEVVERKGVRLAGLY---------GVKRTLDLPHAE 328 (334)
T ss_dssp HHHHTSGGGTTCEEEEEEESSCSEEEECGG---------GCEEECCCCSSC
T ss_pred HHHhhcCCCCCEEEEEEEEeCCcEEEEecC---------CCEEECCCCCCc
Confidence 99988 79999999999977777776432 456677877654
No 12
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=98.28 E-value=6.4e-07 Score=98.95 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=77.1
Q ss_pred ccccCCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCC
Q psy2354 626 IMLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG 705 (749)
Q Consensus 626 v~l~gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~ 705 (749)
.+..|.+.+++++ .++ | ...++|.|.+ +....|||..++.||+.++++|+|+|+.|+.-+.++++| + ++.
T Consensus 65 ~l~~GdDaAV~~~--~~~-~--~~lv~ttD~f-~p~~~dP~~~G~~Ava~~lsDiaAmGA~P~~~~l~~l~~--p--~~~ 134 (394)
T 3fd5_A 65 RLGIGMDTCVIPL--RHG-G--LSLVQTTDYI-YPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGV--S--NKM 134 (394)
T ss_dssp CBCTTSSSEEEEC--SST-T--CEEEEEEEEE-CCCSSCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEEEEE--E--TTS
T ss_pred cccCCCCeeEEec--CCC-C--cEEEEEeecc-CCcCCCHHHHHHHHHHHHHHHHHHCCchhHHHHhhhEec--C--CCC
Confidence 3455667777765 121 2 3466777777 356789999999999999999999999887633344455 4 334
Q ss_pred Ch----HHHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 706 EG----AALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 706 ~~----~~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
++ +.+.+.++|+.++|+++|+|++||+.+.+-
T Consensus 135 ~~~~~~~~l~~i~~Gi~~~~~~~gv~lvGGdT~~~p 170 (394)
T 3fd5_A 135 TDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNP 170 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEES
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhCCcEEeeeEEEcC
Confidence 44 468889999999999999999999988764
No 13
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}
Probab=98.26 E-value=7e-07 Score=97.01 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=74.2
Q ss_pred CCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCC-ChH
Q psy2354 630 NLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG-EGA 708 (749)
Q Consensus 630 gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~-~~~ 708 (749)
|-+.+++++ ++| ...++|+|.++. ...|||..++.||+.++++|+|+|+.|+. +.++ ++|| +|+ +.+
T Consensus 49 gdDaavi~~----~~~--~~lv~ttD~~~~-~~~~p~~~G~~ava~~lsDiaamGA~P~~-~l~~--l~~p--~~~~~~~ 116 (347)
T 3u0o_A 49 RDDAAVYDL----GNG--TSVISTTDFFMP-IVDNPFDFGRIAATNAISDIFAMGGKPIM-AIAI--LGWP--INKLSPE 116 (347)
T ss_dssp CCSSEEEEC----TTS--EEEEEEEEEESC-CSSCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEE--EEEC--TTTSCHH
T ss_pred CCceEEEEe----CCC--cEEEEEecCCCC-CccCHHHHHHHHHHHHHHHHHHcCCchHH-HHhh--eeCC--CCCCCHH
Confidence 345666664 233 346777777753 57899999999999999999999999886 4344 4443 233 457
Q ss_pred HHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 709 ALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 709 ~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
.+.+-++||.++|+++|+|+|||+.+.+.
T Consensus 117 ~l~~i~~Gi~~~~~~~gv~lvGGdt~~~~ 145 (347)
T 3u0o_A 117 IAREVTEGGRYACRQAGIALAGGHSIDAP 145 (347)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHcCCEEEcceeccCC
Confidence 78899999999999999999999998764
No 14
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=98.24 E-value=1e-06 Score=95.52 Aligned_cols=98 Identities=10% Similarity=-0.102 Sum_probs=73.6
Q ss_pred CCCCceeeEEeecccceeeEeeeccCCCCce-eccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChH
Q psy2354 630 NLENSVLGVWVAHGEVMLRGAATSIGEQPIK-GLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGA 708 (749)
Q Consensus 630 gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~-~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~ 708 (749)
|-+.+++++ ++........+.+.+|.+ ..+|||..++.||+.++++|+|+|+.|+. + +++++|+ .++ +.+
T Consensus 61 GdDaAvi~~----~~~~lv~ttD~~~~~~~f~~~~~p~~iG~~ava~~vsDlaamGA~P~~-~--l~~l~~p-~~~-~~~ 131 (342)
T 3c9u_A 61 GDDTAPVEY----CSKKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNVSDVIANGGLPKW-A--LISLNLP-EDL-EVS 131 (342)
T ss_dssp TSSSEEEEE----TTEEEEEEEEEEEBTTTBCTTSCHHHHHHHHHHHHHHHHHHTTCEEEE-E--EEEEEEC-TTS-BHH
T ss_pred CCceEEEec----CCCeEEEEeCccCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCchHH-h--EEEEecC-CCC-CHH
Confidence 556667765 222233333444458877 46899999999999999999999999886 4 4455554 122 357
Q ss_pred HHHHHHHHHHHHHHHcCccccccccCcc
Q psy2354 709 ALFDACQAMCDIMGEFGIAVDGGKDSLS 736 (749)
Q Consensus 709 ~l~~a~~gl~d~~~~lg~PvvgGkdSls 736 (749)
.+.+.++||.++|+++|+|+|||+.+-+
T Consensus 132 ~l~~i~~Gi~~~~~~~gv~lvGGdT~~~ 159 (342)
T 3c9u_A 132 YVERFYIGVKRACEFYKCEVVGGNISKS 159 (342)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCeEEeeEeeec
Confidence 7889999999999999999999999864
No 15
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=98.22 E-value=4.8e-07 Score=97.76 Aligned_cols=93 Identities=10% Similarity=0.090 Sum_probs=78.5
Q ss_pred CCEEEEcccCccccccccccccc-CCCceEEecccccCCC--------CcChhhhc--ccccccccccccCcccHHHHHH
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVE-PVGAVVFTESFLLGDP--------SISTLELW--GAEYQENNALLCKPLHCKTLRM 340 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~-~~G~~i~l~~v~~~~~--------~ms~~eI~--~sEsQEr~~l~v~~~~~~~~~~ 340 (749)
..+.++||+.-||+..++.||+. .+|++|+++++|..+. +++|++++ .+|++. |++.++|++.+.+.+
T Consensus 213 ~~v~a~~DiS~GGL~~~L~ema~s~vg~~I~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~g~g-ll~~v~~~~~~~~~~ 291 (334)
T 2v9y_A 213 GHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPRVFSWLQQEGHLSEEEMARTFNCGVG-AVLVVSKEQTEQILR 291 (334)
T ss_dssp TCCCEEEECCTTHHHHHSGGGSCTTEEEEEEGGGSCCCHHHHHHHHHHTCCHHHHHHHCCTTEE-EEEEECGGGHHHHHH
T ss_pred CCceEEEeCCCCcHHHHHHHHhhcCeEEEEecccCCCcHHHHHHHHhcCCCHHHHHHHhCCCCC-EEEEECHHHHHHHHH
Confidence 46899999999999999999993 2799999999997653 26787763 688866 999999999999999
Q ss_pred HHhhcCCCeEEEEEEeCC----CCEEEEe
Q psy2354 341 ISAREKCPVQFVGVVTGS----NKIVLAE 365 (749)
Q Consensus 341 i~~re~~~~~vVG~~T~~----~~l~~~~ 365 (749)
++++.+.++++||++|+. +++.+..
T Consensus 292 ~l~~~g~~~~~IG~V~~~~~~~~~V~~~~ 320 (334)
T 2v9y_A 292 GIQQHKEEAWVIGSVVARAEGSPRVKVKN 320 (334)
T ss_dssp HHHHTTCCEEEEEEEEEC----CCEEEET
T ss_pred HHHhcCCCeEEEEEEeccCCCCCeEEEec
Confidence 999999999999999863 4666643
No 16
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=98.18 E-value=1.3e-06 Score=93.66 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=69.9
Q ss_pred CCCCceeeEEeecccceeeEeeeccCC---CC-ceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCC
Q psy2354 630 NLENSVLGVWVAHGEVMLRGAATSIGE---QP-IKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG 705 (749)
Q Consensus 630 gm~Gsvlpi~vaHGeGr~~~~a~s~g~---np-~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~ 705 (749)
|-+.+++++. +| ...++|+|. +| .+..+|||..++.||+.++++|+|+|+.|+. + +++++|+ + .
T Consensus 25 GdDaavi~~~----~~--~~lv~ttD~~~~~~hf~~~~~p~~~G~~ava~~lsDiaamGa~P~~-~--l~~l~~p--~-~ 92 (319)
T 3mcq_A 25 GDDAALIQPS----PG--MELAVSADMLVANTHFYPNIDPWLIGWKSLAVNISDMAAMGAQPRW-A--TLTIALP--E-A 92 (319)
T ss_dssp CGGGGCCCCC----TT--CEEEEEEEEEECCTTSCCCSCHHHHHHHHHHHHHHHHHHTTCEEEE-E--EEEEEES--S-C
T ss_pred CCCEEEEeeC----CC--CeEEEEecccCcccCCCCCCCHHHHHHHHHHHHHHHHHHcCCchHH-h--EEEEECC--C-C
Confidence 4456666542 22 234555554 33 2345699999999999999999999999876 4 4455554 2 4
Q ss_pred ChHHHHHHHHHHHHHHHHcCccccccccCc
Q psy2354 706 EGAALFDACQAMCDIMGEFGIAVDGGKDSL 735 (749)
Q Consensus 706 ~~~~l~~a~~gl~d~~~~lg~PvvgGkdSl 735 (749)
+++.+.+.++||.++|+++|+|++||+.+-
T Consensus 93 ~~~~l~~i~~Gi~~~~~~~g~~lvGGdt~~ 122 (319)
T 3mcq_A 93 DEDWISKFAAGFFACAAQFDIALIGGDTTR 122 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEeeEcCC
Confidence 557799999999999999999999999873
No 17
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=98.17 E-value=4.9e-07 Score=97.94 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEcccCccccccccccccc--CCCceEEecccccCCC--------CcChhhhcccccccc
Q psy2354 256 KLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDP--------SISTLELWGAEYQEN 325 (749)
Q Consensus 256 ~~q~vi~~~~~~~~~~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~--------~ms~~eI~~sEsQEr 325 (749)
.+++++....+. ...|.++||+.-||+..++.||+. .+|++|+++++|..+. +++|+++. ++. +
T Consensus 200 ~~~~~~~~~~~~---~~~v~a~~Dis~GGL~~~L~e~a~~s~vg~~I~~~~iP~~~~~~~~~~~~~~~~~~~~-~~G--~ 273 (343)
T 2z1u_A 200 SLNRVVEKLVLE---VGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRNGCSFLGLDPLYLA-NEG--K 273 (343)
T ss_dssp CCHHHHHHHHHH---TCCCCEEECCCTTHHHHHHHHHHHHHTSEEEEEGGGSCCCHHHHHHHHHTTCCTTSSC-CSS--C
T ss_pred hHHHHHHHHHhc---cCCceEEEeCCCchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHhcCCCHHHHh-ccc--e
Confidence 334445554432 246899999999999999999985 5899999999997642 35666655 554 8
Q ss_pred cccccCcccHHHHHHHHhh--cCCCeEEEEEEeC------C--CCEEEEeccccccCCCCCCCCcccccchhh
Q psy2354 326 NALLCKPLHCKTLRMISAR--EKCPVQFVGVVTG------S--NKIVLAEDKAKYYSNPSSPLQHPVDIQMEL 388 (749)
Q Consensus 326 ~~l~v~~~~~~~~~~i~~r--e~~~~~vVG~~T~------~--~~l~~~~~~f~~~~~~~~~~~~~vdlp~~~ 388 (749)
|++.++|++.+.+.+++++ .++++++||++|+ + +++++.... .++.++|+|+..
T Consensus 274 ll~~v~~~~~~~~~~~l~~~~~g~~~~~IG~v~~~~~~~~~~~~~v~~~~~~---------g~~~~l~~p~~d 337 (343)
T 2z1u_A 274 LICILPEERAEAALAVLREGPHGEHAARIGSVKSVGELGAARAGQVVMETAL---------GGHRLLSMLEGE 337 (343)
T ss_dssp CEEEECHHHHHHHHHHHHTSTTGGGCEEEEEEECTTSSSSCCTTCEEEECTT---------SSEEECCCCC--
T ss_pred EEEEECHHHHHHHHHHHhhccCCCCeEEEEEEEecccccCCCCCeEEEEeCC---------CCEEECCCCCCC
Confidence 9999999999999999988 7899999999997 4 468775422 456678887654
No 18
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=98.11 E-value=1.4e-06 Score=94.70 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=80.2
Q ss_pred CCCEEEEcccCccccccccccccc-CCCceEEecccccCCC--------CcChhhhccc-ccccccccccCcccHHHHHH
Q psy2354 271 LNPIESIHDQGAGGNGNVLKEIVE-PVGAVVFTESFLLGDP--------SISTLELWGA-EYQENNALLCKPLHCKTLRM 340 (749)
Q Consensus 271 ~~~i~~i~D~GaGG~~na~~El~~-~~G~~i~l~~v~~~~~--------~ms~~eI~~s-EsQEr~~l~v~~~~~~~~~~ 340 (749)
...|.++||+..||+...+.||+. .+|++|+++++|..+. +++|.|+|.. ..+.+|++.|+|++.+.+.+
T Consensus 246 ~~~v~a~~DiTggGL~~~L~ei~~sgvg~~I~~~~iP~~~~~~~~~~~~~~~~~e~~~~~~~g~gll~~v~~~~~~~~~~ 325 (350)
T 3m84_A 246 GVDIKGMAHITGGGFIENIPRVLPQGLGAQIDKDSFATPAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQFDKMQE 325 (350)
T ss_dssp TCCCCEEEECCTTHHHHHHHHHSCTTCEEEECGGGSCCCHHHHHHHHHHTCCHHHHHHHCCTTEEEEEEECGGGHHHHHH
T ss_pred cCCeeEEEeCCCccHHHHHHHHhhhCceEEEEcccCCCcHHHHHHHHhcCCCHHHHHHHHhCCCCEEEEECHHHHHHHHH
Confidence 457999999999999999999994 3899999999998642 4778776532 45679999999999999999
Q ss_pred HHhhcCC-CeEEEEEEeCCCCEEE
Q psy2354 341 ISAREKC-PVQFVGVVTGSNKIVL 363 (749)
Q Consensus 341 i~~re~~-~~~vVG~~T~~~~l~~ 363 (749)
++++.++ ++++||++|.++++++
T Consensus 326 ~l~~~g~~~a~~IG~V~~~~~v~~ 349 (350)
T 3m84_A 326 LAKKHTNTKLYQIGKITNSGKVEI 349 (350)
T ss_dssp HHTTCTTSCEEEEEEEESSSSEEE
T ss_pred HHHhcCCCCeEEEEEEEeCCcEEE
Confidence 9999999 9999999998888765
No 19
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=98.08 E-value=9.9e-07 Score=94.34 Aligned_cols=81 Identities=11% Similarity=0.074 Sum_probs=65.9
Q ss_pred eeeccCCC---CceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCc
Q psy2354 650 AATSIGEQ---PIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGI 726 (749)
Q Consensus 650 ~a~s~g~n---p~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~ 726 (749)
.++|+|.+ |++ .+||..++.||++++++|+|+|+.|+. +.++++| | +.+ +.+.+.+.++||.++|+++|+
T Consensus 30 l~~t~D~~v~~~~~--~~~~~iG~~ava~~~sDiaamGA~P~~-~~~~l~~--p-~~~-~~~~l~~i~~Gi~~~~~~~g~ 102 (314)
T 3vti_C 30 ITLTTDSFTVKPLF--FPGGDIGKLAVCGTVNDASMRGAKPLF-LTAAFII--E-EGF-PVEDLKKIVKSMAEAAKEAGV 102 (314)
T ss_dssp EEEEEEEECCSSSE--ETTEEHHHHHHHHHHHHTTTTTEEEEE-EEEEEEE--E-TTC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEEecCCccCCcc--cCccHHHHHHHHHHHHHHHHcCCccce-eEEEEEc--C-CCC-CHHHHHHHHHHHHHHHHHcCC
Confidence 45555555 776 489999999999999999999999887 5555555 4 222 357899999999999999999
Q ss_pred cccccccCccc
Q psy2354 727 AVDGGKDSLSM 737 (749)
Q Consensus 727 PvvgGkdSls~ 737 (749)
|++||+.+.+.
T Consensus 103 ~lvGGdt~~~~ 113 (314)
T 3vti_C 103 KIVAGDTKVVE 113 (314)
T ss_dssp EEEEEEEEEEC
T ss_pred eEEeeeeEEcc
Confidence 99999999754
No 20
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=98.04 E-value=3.7e-06 Score=90.71 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=70.1
Q ss_pred ccccCCCCceeeEEeecc--cceeeEeeeccCCCC---ceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccc
Q psy2354 626 IMLRNLENSVLGVWVAHG--EVMLRGAATSIGEQP---IKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWA 700 (749)
Q Consensus 626 v~l~gm~Gsvlpi~vaHG--eGr~~~~a~s~g~np---~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~ 700 (749)
++-.|-++.++++. .+ .+ ...++++|.++ ++. +++..++.||+++++||+|+|+.|+. + +++++||
T Consensus 29 ~l~~gdDaavi~~~--~~~~~~--~~l~~t~D~~~~dp~~~--~~~~iG~~ava~~lsDlaamGA~P~~-~--~~~l~~p 99 (334)
T 2rb9_A 29 WLAEQEDQARLDLA--QLVAEG--DRLAFSTDSYVIDPLFF--PGGNIGKLAICGTANDVAVSGAIPRY-L--SCGFILE 99 (334)
T ss_dssp TTTTCCSSEEEEHH--HHHHHC--SEEEEEEEEECCSSSEE--TTEEHHHHHHHHHHHHHHTTTCCCCE-E--EEEEEEE
T ss_pred ccCCCCceEEEecC--cccCCC--ceEEEEecCcccCCccC--CcccHHHHHHHHHHHHHHHCCCchHH-h--EEEEecC
Confidence 33445566666541 00 01 23555666554 332 33466999999999999999999986 4 4455555
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 701 AKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 701 ~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
++++ .+.+.+.++||.++|+++|+|++||+.|.+.
T Consensus 100 -~~~~-~~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~ 134 (334)
T 2rb9_A 100 -EGLP-METLKAVVTSMAETARTAGIAIVTGDTKVVQ 134 (334)
T ss_dssp -TTCC-HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred -CCCC-HHHHHHHHHHHHHHHHHcCCEEEeeEeEEcc
Confidence 2332 4778899999999999999999999999754
No 21
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=97.98 E-value=1.3e-06 Score=94.77 Aligned_cols=93 Identities=10% Similarity=0.092 Sum_probs=77.0
Q ss_pred CCEEEEcccCccccccccccccc-CCCceEEecccccCC--------CCcChhhh--cccccccccccccCcccHHHHHH
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVE-PVGAVVFTESFLLGD--------PSISTLEL--WGAEYQENNALLCKPLHCKTLRM 340 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~-~~G~~i~l~~v~~~~--------~~ms~~eI--~~sEsQEr~~l~v~~~~~~~~~~ 340 (749)
..|.++||+.-||+..++.||+. .+|++|+++++|... -+++|.|+ ..+|+ .+|++.++|++.+.+.+
T Consensus 239 ~~v~a~~DiS~GGL~~~L~ema~s~vg~~I~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~g-~gll~~v~~~~~~~~~~ 317 (346)
T 2btu_A 239 HEVYGMAHITGGGFIENIPRMLPEGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMG-IGMVVAVKEEDAKDIVR 317 (346)
T ss_dssp SCCCCCEECCTTHHHHHTGGGCCTTEEEEECTTSSCCCHHHHHHHHHHTCCHHHHTTTCCTT-EEEEEEECTTTHHHHHH
T ss_pred CCceEEEeCCCChHHHHHHHHHhCCeeEEEeecCCCCCHHHHHHHHhcCCCHHHHHHHhCCc-CcEEEEEcHHHHHHHHH
Confidence 46889999999999999999994 379999999998643 24677765 45777 45999999999999999
Q ss_pred HHhhcCCCeEEEEEEeCCCCEEEEe
Q psy2354 341 ISAREKCPVQFVGVVTGSNKIVLAE 365 (749)
Q Consensus 341 i~~re~~~~~vVG~~T~~~~l~~~~ 365 (749)
++++.++++++||++|+.+++++..
T Consensus 318 ~l~~~g~~~~~IG~V~~~~~v~~~g 342 (346)
T 2btu_A 318 LLEEQGETARIIGRTVQGAGVTFNG 342 (346)
T ss_dssp HHHHHTCCEEEEEEEEESSSEEEC-
T ss_pred HHHhCCCCeEEEEEEecCCeEEEcC
Confidence 9999999999999999766776643
No 22
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=97.90 E-value=2.4e-06 Score=92.58 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 664 DPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 664 dPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
+++.-++.||+++++||+|+|+.|+. +.++ ++|| .++ +.+.+.+.++||.++|+++|+|++||+.|.+.
T Consensus 66 ~~~~iG~~ava~~lsDlaamGA~P~~-~~~~--l~~p-~~~-~~~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~~ 134 (343)
T 2z1u_A 66 PGGDIGTLAVHGTVNDVSMLGARPRY-LSCG--FILE-EGL-DMDILERVVASMGKAAREAGVFIVTGDTKVVP 134 (343)
T ss_dssp TTEEHHHHHHHHHHHHHHTTTEEEEE-EEEE--EEEE-TTC-CHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHcCCeeHH-hhee--eecC-CCC-CHHHHHHHHHHHHHHHHHhCCEEECcEEEEcC
Confidence 34455999999999999999999886 4444 4445 222 34578899999999999999999999999764
No 23
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=97.89 E-value=1.2e-05 Score=86.76 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=67.3
Q ss_pred cCCCCceeeEEeecccceeeEeeeccCCC---CceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCC
Q psy2354 629 RNLENSVLGVWVAHGEVMLRGAATSIGEQ---PIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG 705 (749)
Q Consensus 629 ~gm~Gsvlpi~vaHGeGr~~~~a~s~g~n---p~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~ 705 (749)
.|-+.+++++. + ...++|+|.. |++. .++..++.||+++++||+|+|+.|+. .+++++|+.+.
T Consensus 40 ~gdDaav~~~~---~----~~lv~ttD~~~~~~~~~--~~~~iG~~ava~~lsDl~a~Ga~P~~---~~~~l~~p~~~-- 105 (338)
T 2z1e_A 40 ALDDGATIPFG---D----KHIVFTIDGHTVKPLFF--PGGDIGRLAVSGTVNDLAVMGAEPIA---LANSMIIGEGL-- 105 (338)
T ss_dssp -CCSCEEEEET---T----EEEEEEEEEECCSSSEE--TTEEHHHHHHHHHHHHHHTTTCEEEE---EEEEEEEETTC--
T ss_pred CCCceEEEEeC---C----CEEEEEeCCCccCcccc--CCccHHHHHHHHHHHHHHHcCCchhH---hEEEEecCCCC--
Confidence 34556666651 1 2344555544 3331 22234999999999999999998875 45666666322
Q ss_pred ChHHHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 706 EGAALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 706 ~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
+.+.+.+.++||.++|+++|+|++||+.+.+.
T Consensus 106 ~~~~l~~~~~Gi~~~~~~~g~~lvGGdt~~~~ 137 (338)
T 2z1e_A 106 DMEVLKRVLKSMDETAREVPVPIVTGDTKVVE 137 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEEEEES
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEECcEEEEcC
Confidence 35789999999999999999999999998754
No 24
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=97.86 E-value=4.8e-06 Score=90.29 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCcc
Q psy2354 664 DPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLS 736 (749)
Q Consensus 664 dPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls 736 (749)
+||..++.||+++++||+|+|+.|+. +. +++++ +++ +++.|.+.++||.++|+++|+|++||+.+.+
T Consensus 78 ~~~~iG~~ava~~vsDlaa~Ga~P~~-~~--~~l~~--~~~-~~~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~ 144 (348)
T 2z01_A 78 RHDTIGIDCVAMCVNDIIVQGAEPLF-FL--DYIAC--GKA-VPEKIAAIVKGVADGCVEAGCALIGGETAEM 144 (348)
T ss_dssp CCSSHHHHHHHHHHHHHHTTTCEEEE-EE--EEEEE--SSC-CHHHHHHHHHHHHHHHHHHTCEEEECCEEC-
T ss_pred CHHHHHHHHHHHHHHHHHhcCCChHH-HH--HHhcC--CCC-CHHHHHHHHHHHHHHHHHcCCEEECceeeec
Confidence 67899999999999999999999987 33 34444 345 5677999999999999999999999999843
No 25
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=97.78 E-value=8.2e-06 Score=88.37 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCcc
Q psy2354 664 DPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLS 736 (749)
Q Consensus 664 dPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls 736 (749)
+|++.++.||+++++||+|+|+.|+. +.+++++ +++ +++.+.+.++||.++|+++|+|++||+.|.+
T Consensus 76 ~~~~iG~~ava~~vsDi~a~Ga~P~~-~l~~l~~----~~~-~~~~l~~i~~Gi~~~~~~~g~~lvGGdt~~~ 142 (346)
T 2btu_A 76 KHDTIGIDAVAMCVNDIVVQGAEPLF-FLDYIAC----GKA-EPSKIENIVKGISEGCRQAGCALIGGETAEM 142 (346)
T ss_dssp CCSSHHHHHHHHHHHHHHTTTCEEEE-EEEEEEE----SSC-CHHHHHHHHHHHHHHHHHHTCEEEEEEEEEC
T ss_pred CcchHHHHHHHHHHHHHHHcCCChHH-HHHHHhc----CCC-CHHHHHHHHHHHHHHHHHhCCeEeeeEEEEc
Confidence 57889999999999999999999987 3334333 445 5677999999999999999999999999854
No 26
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=97.77 E-value=7.4e-06 Score=89.02 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCEEEEcccCccccccccccccc-CCCceEEecccccCC--------CCcChhhhccc-ccccccccccCcccHHHHHHH
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVE-PVGAVVFTESFLLGD--------PSISTLELWGA-EYQENNALLCKPLHCKTLRMI 341 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~-~~G~~i~l~~v~~~~--------~~ms~~eI~~s-EsQEr~~l~v~~~~~~~~~~i 341 (749)
..|.++||+..||+...+.||+. .+|++|+++++|..+ -++++.|++.. .++.+|++.|+|++.+.+.++
T Consensus 243 ~~v~a~~DiTggGL~~~L~e~a~sgvg~~Id~~~iP~~~~~~~~~~~~~~~~~e~~~~~~~g~gll~~v~~~~~~~~~~~ 322 (349)
T 3p4e_A 243 HDIHAISHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAAVAL 322 (349)
T ss_dssp SCCCEEEECCTTHHHHHGGGGCCTTEEEEECTTSCCCCHHHHHHHHHHTCCHHHHHTTSCTTEEEEEEECHHHHHHHHHH
T ss_pred CCceEEEeCCcchHHHHHHHHhhhCceEEEeccCCCCCHHHHHHHHhcCCCHHHHHHhcCCCCcEEEEEcHHHHHHHHHH
Confidence 46899999999999999999994 379999999999854 25788776532 457899999999999999999
Q ss_pred HhhcCCCeEEEEEEeC
Q psy2354 342 SAREKCPVQFVGVVTG 357 (749)
Q Consensus 342 ~~re~~~~~vVG~~T~ 357 (749)
+++.++++++||++|.
T Consensus 323 l~~~g~~a~vIG~V~~ 338 (349)
T 3p4e_A 323 LQAEGETAWVIGEIAA 338 (349)
T ss_dssp HHHTTCCEEEEEEEEE
T ss_pred HHhcCCCeEEEEEEec
Confidence 9999999999999984
No 27
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=97.75 E-value=6.9e-06 Score=90.72 Aligned_cols=94 Identities=6% Similarity=-0.038 Sum_probs=77.6
Q ss_pred CCEEEEcccCcccccccccccccC--CCceEEecccccCCCCcCh-------hhh---cccccccccccccCcccHHHHH
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSIST-------LEL---WGAEYQENNALLCKPLHCKTLR 339 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~~--~G~~i~l~~v~~~~~~ms~-------~eI---~~sEsQEr~~l~v~~~~~~~~~ 339 (749)
..+.++||+.-||+...+.||+.. +|++|+++++|+.+..... +++ +-.|++.+|++.|+|++.+.+.
T Consensus 260 ~~v~A~~DvT~gGL~~~L~ema~aSgvg~~I~~~~iPi~~~~~~~~~~~~~~~~l~~g~d~etsGgLL~~v~~~~~~~~~ 339 (394)
T 3fd5_A 260 FNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFC 339 (394)
T ss_dssp TTCCEEEECCTTHHHHHHHHHHTTCSSSEEEEEEEEEEETTHHHHHHHTTTSSCGGGTCCCCSSCCEEEEECHHHHHHHH
T ss_pred cCceEEEeCCCcHHHHHHHHHHHhcCCcEEEEeccCCCCHHHHHHHHhcchhhhhhcccCcccCCcEEEEECHHHHHHHH
Confidence 468999999999999999999984 8999999999987653222 121 2357889999999999999999
Q ss_pred HHHhhc----CCCeEEEEEEeCC-CCEEEEe
Q psy2354 340 MISARE----KCPVQFVGVVTGS-NKIVLAE 365 (749)
Q Consensus 340 ~i~~re----~~~~~vVG~~T~~-~~l~~~~ 365 (749)
+++++. ++++++||++|.. +.+++.+
T Consensus 340 ~~l~~~~~~~g~~a~~IG~V~~~~~~~~l~~ 370 (394)
T 3fd5_A 340 AEIKSPKYGEGHQAWIIGIVEKGNRTARIID 370 (394)
T ss_dssp HHHHCC---CCCCCEEEEEEEESSSCEEEEE
T ss_pred HHHHhccccCCCCEEEEEEEEeCCceEEEEE
Confidence 999998 9999999999954 4466654
No 28
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=97.75 E-value=1.5e-05 Score=85.50 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=77.8
Q ss_pred CCEEEEcccCccccccccccccc--CCCceEEecccccCCCCc------Chhhh-cccccccccccccCcccHHHHHHHH
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSI------STLEL-WGAEYQENNALLCKPLHCKTLRMIS 342 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~m------s~~eI-~~sEsQEr~~l~v~~~~~~~~~~i~ 342 (749)
+.+.++||+.- |+...+.||+. .+|++|+++++|+.+... .+++. ...+.|.||++.++|++.+.+.+++
T Consensus 201 ~~v~a~~DiS~-GL~~~L~e~a~~s~vg~~i~~~~iP~~~~~~~~~~~~~~~~~~l~~G~d~~ll~~v~~~~~~~~~~~l 279 (319)
T 3mcq_A 201 GLAHSALDISD-GLLADLGHILEHSQVGAEVWLKAIPKSEVVSAHSQEVAIQKMILSGGDDYELCFTASTQHRQQIADIG 279 (319)
T ss_dssp TTEEEEEECSS-CHHHHHHHHHHHHTCEEEEEGGGSCCCHHHHHTTTSHHHHHHHHHCSCCCCEEEEEEGGGHHHHHHHH
T ss_pred ccCcEEEEccH-hHHHHHHHHHHHcCCcEEEeecccCCCHHHHHHHhcCCHHHHHHcCCCceeEEEEEcHHHHHHHHHHH
Confidence 57999999997 99999999986 589999999999865321 12332 3456688999999999999999999
Q ss_pred hhcCCCeEEEEEEeCCCCEEEEe
Q psy2354 343 AREKCPVQFVGVVTGSNKIVLAE 365 (749)
Q Consensus 343 ~re~~~~~vVG~~T~~~~l~~~~ 365 (749)
++.++++++||++|++.++.+.+
T Consensus 280 ~~~g~~~~~IG~V~~~~~~~~~~ 302 (319)
T 3mcq_A 280 RQLSLDMAVIGRITDTQQLVIHG 302 (319)
T ss_dssp HHTTCCCEEEEEEESSCCEEEEC
T ss_pred HHcCCCcEEEEEEEeCCceEEEc
Confidence 99999999999999887877654
No 29
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=97.74 E-value=5.2e-06 Score=90.09 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=76.9
Q ss_pred CCEEEEcccCccccccccccccc--CCCceEEecccccCCCCcC----------------hhhhc---ccccccc-----
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSIS----------------TLELW---GAEYQEN----- 325 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~ms----------------~~eI~---~sEsQEr----- 325 (749)
..+.++||+.-||+..++.||+. .+|++|+++++|+.+.... +++.| +.|.+|.
T Consensus 221 ~~v~a~~DiS~gGL~~~L~e~a~~sgvg~~I~~~~iPi~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~~~~~~~~llfd 300 (345)
T 2yyd_A 221 LDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSD 300 (345)
T ss_dssp TTCSEEEECCTTHHHHHHHHHHHHHTCEEEECGGGSCBCHHHHHHHHTTCCCHHHHHHHHHHTTTEECCCCHHHHHHHHS
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHcCCcEEEEhhcCCCCHHHHHHHHcCCCCcchhhhHHHHHhhccccCHHHHHhhccC
Confidence 46899999999999999999986 5899999999998765322 22222 4565665
Q ss_pred ------cccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEE
Q psy2354 326 ------NALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVL 363 (749)
Q Consensus 326 ------~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~ 363 (749)
|++.|+|++.+.+.+++++.++++++||++|...++.+
T Consensus 301 p~tsGgll~~v~~~~~~~~~~~l~~~g~~a~vIG~v~~~~~~~~ 344 (345)
T 2yyd_A 301 PVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEV 344 (345)
T ss_dssp CCSSCCEEEEECGGGGGTHHHHHHHHTCCCEEEEEEESSSSEEE
T ss_pred cccCceEEEEEcHHHHHHHHHHHHHcCCCEEEEEEEeeCCceee
Confidence 89999999999999999999999999999998888764
No 30
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=97.73 E-value=1.2e-05 Score=86.90 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCc
Q psy2354 665 PKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSL 735 (749)
Q Consensus 665 Py~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSl 735 (749)
||..++.||+++++||+|+|+.|+. +.+++++ ++ .+++.+.+.++||.++|+++|+|+|||+.|-
T Consensus 49 ~~~iG~~ava~~vsDiaamGA~P~~-~l~~l~~----~~-~~~~~l~~i~~Gi~~~~~~~g~~lvGGdT~~ 113 (334)
T 2v9y_A 49 HDTIGQDLVAMCVNDILAQGAEPLF-FLDYFSC----GK-LDLSVTEAVVAGIAKACGKAGCALLGGETAE 113 (334)
T ss_dssp CTTHHHHHHHHHHHHHHTTTCEEEE-EEEEEEE----SS-CCHHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCcHHH-HHHHhcC----CC-CCHHHHHHHHHHHHHHHHHhCCeEEeEEeEE
Confidence 4899999999999999999999987 3345554 33 4567789999999999999999999999983
No 31
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=97.73 E-value=8.6e-06 Score=88.30 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=77.2
Q ss_pred CCEEEEcccCccccccccccccc-CCCceEEecccccCCC--------CcChhh--hcccccccccccccCcccHHHHHH
Q psy2354 272 NPIESIHDQGAGGNGNVLKEIVE-PVGAVVFTESFLLGDP--------SISTLE--LWGAEYQENNALLCKPLHCKTLRM 340 (749)
Q Consensus 272 ~~i~~i~D~GaGG~~na~~El~~-~~G~~i~l~~v~~~~~--------~ms~~e--I~~sEsQEr~~l~v~~~~~~~~~~ 340 (749)
..|.++||+.-||+..++.||+. .+|++|+++++|.... ++++.+ ...||++ +|++.++|++.+.+.+
T Consensus 241 ~~v~a~~DiSdGGL~~~L~em~~s~vg~~I~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~g~-gll~~v~~~~~~~~~~ 319 (348)
T 2z01_A 241 FTIKGMAHITGGGLIENIPRMLPPGIGARIQLGSWPILPIFDFLREKGSLEEEEMFSVFNMGI-GLVLAVSPETAAPLVE 319 (348)
T ss_dssp SCCCEEEECCTTHHHHHHHHHSCTTEEEEEETTSSCCCHHHHHHHHHTTCCHHHHHHHSCTTE-EEEEEECHHHHHHHHH
T ss_pred CCceEEEeCCCCcHHHHHHHHhccCceEEEeccCCCCCHHHHHHHHcCCCCHHHHHHHhCCCC-eEEEEEcHHHHHHHHH
Confidence 46899999999999999999995 3799999999986532 345655 3567875 6999999999999999
Q ss_pred HHhhcCCCeEEEEEEeCCCCEEEEe
Q psy2354 341 ISAREKCPVQFVGVVTGSNKIVLAE 365 (749)
Q Consensus 341 i~~re~~~~~vVG~~T~~~~l~~~~ 365 (749)
++++.++++++||++|+..++++..
T Consensus 320 ~l~~~g~~~~~IG~V~~~~~v~~~g 344 (348)
T 2z01_A 320 WLSERGEPAYIIGEVAKGAGVSFAG 344 (348)
T ss_dssp HHHHTTCCCEEEEEEEESSEEEEEC
T ss_pred HHHhcCCCeEEEEEEecCCeEEEcC
Confidence 9999999999999999666666643
No 32
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=97.72 E-value=1.9e-05 Score=84.05 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=74.2
Q ss_pred CCCEEEEcccCcccccccccccccCCCceEEecccccCCCCc-------Chhh-hcccccccccccccCcccHHHHHHHH
Q psy2354 271 LNPIESIHDQGAGGNGNVLKEIVEPVGAVVFTESFLLGDPSI-------STLE-LWGAEYQENNALLCKPLHCKTLRMIS 342 (749)
Q Consensus 271 ~~~i~~i~D~GaGG~~na~~El~~~~G~~i~l~~v~~~~~~m-------s~~e-I~~sEsQEr~~l~v~~~~~~~~~~i~ 342 (749)
...|.++||+.- |+..++.||+. .|.-+.++++|..+... ++++ ++.+|+|.||++.++|++.+.+.+++
T Consensus 200 ~~~v~a~~DiSd-GL~~~l~ema~-s~~g~~i~~ip~~~~~~~~~~~~~~~~~~~l~~g~~~~ll~~v~~~~~~~~~~~l 277 (311)
T 2yxz_A 200 SGLLRGSLDSSD-GLAETLWQLAD-LGVGVEVEALPLYPDVLAFAGSEEAALELVLYGGEEFEAVLVVPQEGAAAVEARA 277 (311)
T ss_dssp TTTCSEEEEESS-CHHHHHHHHHT-TTCEEEECCCCCCHHHHHHHSSHHHHHHHHHSCCCCCEEEEEECSTTHHHHHHHH
T ss_pred hcCCEEEEeChH-HHHHHHHHHHH-cCCcEEEEeccCCHHHHHHHHccCCHHHHHhhcCCCeEEEEEECHHHHHHHHHHH
Confidence 356899999994 99999999997 44444444777653221 4667 67889999999999999999999999
Q ss_pred hhcCCCeEEEEEEeCCCCEEE
Q psy2354 343 AREKCPVQFVGVVTGSNKIVL 363 (749)
Q Consensus 343 ~re~~~~~vVG~~T~~~~l~~ 363 (749)
++.++++.+||++|+..++++
T Consensus 278 ~~~g~~~~~IG~v~~~~~v~i 298 (311)
T 2yxz_A 278 KAKGLPLFRAGRVVAGEGVYL 298 (311)
T ss_dssp HHTTCCEEEEEEEESSSCEEE
T ss_pred HhcCCCeEEEEEEEcCCceEE
Confidence 999999999999997777776
No 33
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=97.70 E-value=2.6e-05 Score=84.40 Aligned_cols=95 Identities=11% Similarity=-0.026 Sum_probs=68.7
Q ss_pred CCCCceeeEEeecccceeeEeeeccCCCCceeccChHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCCh-H
Q psy2354 630 NLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEG-A 708 (749)
Q Consensus 630 gm~Gsvlpi~vaHGeGr~~~~a~s~g~np~~~~ldPy~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~-~ 708 (749)
|-+.++++. + | ....+|.|..... .-|||..++.||+.++++|+|+|+.|+. +..+++| ++++.+ +
T Consensus 51 GDDaAvi~~----~-~--~~lv~ttD~~~~~-v~~P~~~G~~Av~~~lsDiaAmGa~P~~-~l~~l~~----p~~~~~~~ 117 (345)
T 2zod_A 51 GDDAGVYEH----N-G--IIWVYTVDIITPV-VNDPYLWGAISTANALSDVYAMGGIPVN-ALAISCF----NNCELDIE 117 (345)
T ss_dssp --CCCEEEE----T-T--EEEEEEEEEECCS-SSCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEEE----CTTTCCHH
T ss_pred CCCeEEEec----C-C--cEEEEEecCCCCc-ccCHHHHHHHHHHHHHHHHHHcCCCchh-hhhhhhc----CCCcCCHH
Confidence 445666652 2 2 2345566655433 3489999999999999999999998876 3345555 344433 5
Q ss_pred HHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 709 ALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 709 ~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
.|.+.++||.++|+++|+|+|||..+.+.
T Consensus 118 ~l~~~~~Gi~~~~~~~gv~lvGGdt~~~~ 146 (345)
T 2zod_A 118 IFREVIRGALDKLREAKTVLLGGHTIDDK 146 (345)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHhccCcccCCceEECC
Confidence 57789999999999999999999876543
No 34
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}
Probab=97.61 E-value=9.9e-06 Score=87.91 Aligned_cols=89 Identities=15% Similarity=0.030 Sum_probs=72.6
Q ss_pred CCCCEEEEcccCccccccccccccc--CCCceEEecccccCCCCcChhh----------------h---ccccccc----
Q psy2354 270 NLNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSISTLE----------------L---WGAEYQE---- 324 (749)
Q Consensus 270 ~~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~ms~~e----------------I---~~sEsQE---- 324 (749)
....|.++||+..||+..++.||+. .+|++|+++++|+.+......| . .++|+|+
T Consensus 218 ~~~~v~a~~DiT~gGL~~~L~e~a~~sgvg~~I~~~~iPi~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~l~~~~~~ll~ 297 (347)
T 3u0o_A 218 NIEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYEAIPKLPGVEEYIKLGAVPGGTERNFASYGHLMGEMPREVRDLLC 297 (347)
T ss_dssp TCTTEEEEEECCSSHHHHHHHHHHHHHTEEEEEETTTSCBCTTHHHHHTTCCCCHHHHHHHHHHGGGBCCCCHHHHHHHT
T ss_pred hcCCCEEEEcCCCcHHHHHHHHHHHHcCCeEEEeeccCCCCHHHHHHHHcCCCCchhhhhhhhhcccccccchHHHHhcc
Confidence 3456999999999999999999986 5899999999998865322211 1 2444554
Q ss_pred ------ccccccCcccHHHHHHHHhhcCCCeEEEEEEeCC
Q psy2354 325 ------NNALLCKPLHCKTLRMISAREKCPVQFVGVVTGS 358 (749)
Q Consensus 325 ------r~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~ 358 (749)
+|++.|+|++.+.+.+++++.++++++||++|..
T Consensus 298 dp~~sggll~~v~~~~~~~~~~~l~~~g~~a~~IG~V~~~ 337 (347)
T 3u0o_A 298 DPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGELVPA 337 (347)
T ss_dssp CCCTTCCEEEEECHHHHHHHHHHHHHTTCCCCCCEEEEEC
T ss_pred CcccCccEEEEEcHHHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 5899999999999999999999999999999853
No 35
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=97.60 E-value=1.3e-05 Score=86.81 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=75.1
Q ss_pred CCCEEEEcccCccccccccccccc--CCCceEEecccccCCCC-------c---------Chhhhcccccccc-------
Q psy2354 271 LNPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPS-------I---------STLELWGAEYQEN------- 325 (749)
Q Consensus 271 ~~~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~~-------m---------s~~eI~~sEsQEr------- 325 (749)
...+.++||+.-||+...+.||+. .+|++|+++++|+.+.. + ..++.++...++.
T Consensus 220 ~~~v~a~~Dit~~GL~~~L~eia~~S~vg~~I~~~~iP~~~~~~~~~~~g~~p~~~~~n~~~~~~~~~~~~~~~~~~ll~ 299 (345)
T 2zod_A 220 SLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLS 299 (345)
T ss_dssp HTTCSEEEECCTTHHHHHHHHHHHHHTCEEEECGGGSCBCHHHHHHHHTTCCCHHHHHHHHHHTTTEECCCCHHHHHHHH
T ss_pred ccccceeeccccchHHHHHHHHHhccCCCeEeeccccCcCHHHHHHHHcCCCchhhHHHHHHHHHHhhcCCCHHHHHhcc
Confidence 346899999999999999999987 48999999999986532 1 1233343333333
Q ss_pred -------cccccCcccHHHHHHHHhhcCCCeEEEEEEeCCCCEEE
Q psy2354 326 -------NALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVL 363 (749)
Q Consensus 326 -------~~l~v~~~~~~~~~~i~~re~~~~~vVG~~T~~~~l~~ 363 (749)
|++.|+|++.+.+.+++++.++++++||++|.+.++.+
T Consensus 300 DpqTSGGLL~tv~~~~~~~~~~~l~~~g~~a~~IG~V~~~~~~~V 344 (345)
T 2zod_A 300 DPVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEV 344 (345)
T ss_dssp CCCSSCCEEEEECGGGGGTHHHHHHHHTCCCEEEEEEESSSSEEE
T ss_pred CccccCcEEEEEcHHHHHHHHHHHHHcCCCeEEEEEEEcCCCCEE
Confidence 67889999999999999999999999999999888765
No 36
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=97.59 E-value=8.1e-05 Score=74.25 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCC-
Q psy2354 554 EGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLE- 632 (749)
Q Consensus 554 ~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~- 632 (749)
+.+.+.+.++++ .++.+||||.|+|+|+..|+++ + +..+|...+++..|..|++....+.+++++.
T Consensus 66 ~~~~~~l~~~~~-~~~pilgIC~G~qlLa~aGll~---g---------~v~~~~~~~~~~g~~~v~~~~~~~~l~~~~~~ 132 (213)
T 3d54_D 66 EKIAFEIAKAAE-RGKLIMGICNGFQILIEMGLLK---G---------ALLQNSSGKFICKWVDLIVENNDTPFTNAFEK 132 (213)
T ss_dssp STTHHHHHHHHH-HTCEEEECHHHHHHHHHHTSSC---S---------EEECCSSSSCBCCEEEEEECCCSSTTSTTSCT
T ss_pred HHHHHHHHHHHH-CCCEEEEECHHHHHHHHcCCCC---C---------CeecCCCCceEeeeEEEEeCCCCCceeeccCC
Confidence 446667777775 4789999999999999888887 2 3556666677889999998645678888886
Q ss_pred CceeeEEeecccceee
Q psy2354 633 NSVLGVWVAHGEVMLR 648 (749)
Q Consensus 633 Gsvlpi~vaHGeGr~~ 648 (749)
+..+.++..|++|++.
T Consensus 133 ~~~~~~~~~H~~~s~~ 148 (213)
T 3d54_D 133 GEKIRIPIAHGFGRYV 148 (213)
T ss_dssp TCEEEEECCBSSCEEE
T ss_pred CCEEEEEeecCceEEE
Confidence 5678888899887543
No 37
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=97.26 E-value=0.00016 Score=78.62 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=62.6
Q ss_pred eeeccCCCCcee----ccCh-HHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHc
Q psy2354 650 AATSIGEQPIKG----LVDP-KRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEF 724 (749)
Q Consensus 650 ~a~s~g~np~~~----~ldP-y~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~l 724 (749)
.+.+.|....+. ..|| +..++.||+.++++|+|+|+.|+.- .+++++ ++ .+++.+.+-++|+.++|+++
T Consensus 63 lv~stD~~~~k~~~a~~~~~~~~iG~~ava~~vsDiaamGA~P~~~-l~~l~~----~~-~~~~~l~~i~~Gi~~~~~~~ 136 (350)
T 3m84_A 63 LVQSIDGVGTKTKVAVMCGKFENLGYDLFSAATNDIVVMGAKPITF-LDYVAH----DK-LDPAIMEELVKGMSKACAEC 136 (350)
T ss_dssp EEEEEECCTTHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCEEEEE-EEEEEE----SS-CCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEcCcCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHhcC----CC-CCHHHHHHHHHHHHHHHHHh
Confidence 344444444443 2344 8999999999999999999999884 345454 33 35577899999999999999
Q ss_pred CccccccccCccc
Q psy2354 725 GIAVDGGKDSLSM 737 (749)
Q Consensus 725 g~PvvgGkdSls~ 737 (749)
|+|++||..+.+-
T Consensus 137 g~~lvGGdT~~~p 149 (350)
T 3m84_A 137 GVSLVGGETAEMP 149 (350)
T ss_dssp TCEEEEEEEEECT
T ss_pred CCeEEeeeeeEcC
Confidence 9999999998653
No 38
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=97.21 E-value=0.00013 Score=79.24 Aligned_cols=67 Identities=13% Similarity=-0.046 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhhhcccccCCCccccccccccccccCCCCChHHHHHHHHHHHHHHHHcCccccccccCccc
Q psy2354 665 PKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSM 737 (749)
Q Consensus 665 Py~GA~~aV~Ea~rNlva~ga~~l~~v~~~~Nf~~~~~~P~~~~~l~~a~~gl~d~~~~lg~PvvgGkdSls~ 737 (749)
|+..++.||+.++++|+|+|+.|+.-+ +++++ ++ .+++.+.+-++||.++|+++|+|+|||..+.+.
T Consensus 84 ~~~iG~~aVa~~vsDiaamGA~P~~~l-~~l~~----~~-~~~~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~ 150 (349)
T 3p4e_A 84 HDTIGIDLVAMCVNDLIVQGAEPLFFL-DYYAT----GK-LDVDTAAEVISGIADGCLQAGCALIGGETAEMP 150 (349)
T ss_dssp CSSHHHHHHHHHHHHHHTTTCEEEEEE-EEEEE----SS-CCHHHHHHHHHHHHHHHHHHTCEEEEEEEEECB
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHH-HhhcC----CC-CCHHHHHHHHHHHHHHHHHcCCEEEcceeEECC
Confidence 458999999999999999999998844 45444 33 356779999999999999999999999998754
No 39
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=96.51 E-value=0.0044 Score=53.52 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=48.7
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCcc--HHhhhhhe--eeecc
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLS--RAIITKIV--LAEDK 138 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~--~~~~~~~~--llhDr 138 (749)
.|+|.+|+|+.+|.......+.+.+|+++|+.+..++.|.+..+.+.. .++.+.++ ++++.
T Consensus 5 ~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~gK~~~l~~~~~~~~a~~~v~~~~~~LLaNp 69 (84)
T 1t4a_A 5 KVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDRDLDVLVKEMCEKLLANT 69 (84)
T ss_dssp EEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEECCCSSCHHHHHHHHHHHTTCCT
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEEEEEEEecCchHHHHHHHHHHHHHhcCCC
Confidence 489999999999999999999999999889999999999997654321 23344455 55554
No 40
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=96.26 E-value=0.0078 Score=52.10 Aligned_cols=60 Identities=5% Similarity=0.045 Sum_probs=47.6
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCccH---Hhhhhhe--eeecc
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSR---AIITKIV--LAEDK 138 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~---~~~~~~~--llhDr 138 (749)
.|+|.+|+|+.+|........++.+|+ +|+.+..++.|.+..+.+..+ ++.+.++ ++++.
T Consensus 6 ~V~V~lK~gVlDpqG~av~~al~~LG~-~v~~VR~gK~~~l~~~~~~~~~a~~~v~~~~~~LLaNp 70 (85)
T 1gtd_A 6 EVRIRLKKGMLNPEAATIERALALLGY-EVEDTDTTDVITFTMDEDSLEAVEREVEDMCQRLLCNP 70 (85)
T ss_dssp EEEEEECTTSCCHHHHHHHHHHHHHTC-CCEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTTCCT
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCC-ChheEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCC
Confidence 489999999999999999999999999 999999999999976544322 2334444 55554
No 41
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=96.23 E-value=0.008 Score=53.05 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=43.4
Q ss_pred cEEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCC
Q psy2354 77 NVIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGH 123 (749)
Q Consensus 77 ~~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~ 123 (749)
..|+|.||||+.||-.......++.+|+++|+.+..|++|.|..+.+
T Consensus 18 ~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK~~el~~~~~ 64 (94)
T 1vq3_A 18 FAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAE 64 (94)
T ss_dssp EEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEEEEEEEEECS
T ss_pred EEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeeeEEEEEecCC
Confidence 45999999999999999999999999999999999999999987643
No 42
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=96.08 E-value=0.0065 Score=53.44 Aligned_cols=61 Identities=5% Similarity=0.036 Sum_probs=48.9
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCccH---Hhhhhhe--e-eecc
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSR---AIITKIV--L-AEDK 138 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~---~~~~~~~--l-lhDr 138 (749)
.|+|.+|+|+.+|.......+.+.+|+++|+.+..++.|.+.......+ ++.+.++ + |++.
T Consensus 9 ~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~gK~~~l~~~~~~~~~a~~~v~~~~~~LrLaNp 75 (92)
T 2zw2_A 9 ELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGKYLVFRVNSSSQQEATELVKKLADEMRLYNP 75 (92)
T ss_dssp EEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHTTSSCT
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEEEEEEEecCCCHHHHHHHHHHHHhhccccCc
Confidence 4899999999999999999999999998899999999999986543221 2334455 6 6654
No 43
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=96.05 E-value=0.0052 Score=52.95 Aligned_cols=61 Identities=8% Similarity=0.140 Sum_probs=48.0
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCCccH---Hhhhhhe--eeecc
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSR---AIITKIV--LAEDK 138 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~~~~---~~~~~~~--llhDr 138 (749)
.|+|.+|+|+.+|........++.+|+++|+.+..++.|.+..+.+..+ ++.+.++ ++++.
T Consensus 5 ~V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~gk~~~l~~~~~~~~~a~~~v~~~~~~LLaNp 70 (83)
T 2yx5_A 5 TVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTYKMIDIIMEGENEEKVKEEVEEMCKKLLANP 70 (83)
T ss_dssp EEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCCEEEEEEEC-CCHHHHHHHHHHHHHHTTCCT
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEEEEEEEEecCCCHHHHHHHHHHHHHHhccCC
Confidence 4899999999999999999999999998899999999999976544322 2334445 55554
No 44
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=95.46 E-value=0.0019 Score=69.89 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=62.4
Q ss_pred CEEEEcccCccccccccccccc--CCCceEEecccccCCC--------CcChhhhccccccc-ccccccCcccHHHHHHH
Q psy2354 273 PIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDP--------SISTLELWGAEYQE-NNALLCKPLHCKTLRMI 341 (749)
Q Consensus 273 ~i~~i~D~GaGG~~na~~El~~--~~G~~i~l~~v~~~~~--------~ms~~eI~~sEsQE-r~~l~v~~~~~~~~~~i 341 (749)
.+.+++|+.- |+..++.||+. .+|++|+++++|+.+. +++|+++..+-.++ +|++.++|++.+.+.
T Consensus 237 ~v~a~~DiSd-GL~~~L~eia~~sgvg~~Id~~~iP~~~~~~~~~~~~~~~~~~~~~~GGEd~~ll~~v~~~~~~~l~-- 313 (342)
T 3c9u_A 237 YANASMDISD-GLVADANHLAQRSGVKIEILSEKLPLSNELKMYCEKYGKNPIEYALFGGEDYQLLFTHPKERWNPFL-- 313 (342)
T ss_dssp HCSEEEEESS-CHHHHHHHHHHHHTCEEEECGGGSCCCHHHHHHHHHTTCCHHHHHHHCCCCCEEEEEECGGGCCTTS--
T ss_pred cCeEEEECCc-hHHHHHHHHHHHhCCeEEEehhcCCCCHHHHHHHHHcCCCHHHHHhcCCCceEEEEEECHHHHhhcC--
Confidence 4688999999 99999999985 5899999999998653 57788865544344 899999999754331
Q ss_pred HhhcCCCeEEEEEEeCCCC
Q psy2354 342 SAREKCPVQFVGVVTGSNK 360 (749)
Q Consensus 342 ~~re~~~~~vVG~~T~~~~ 360 (749)
.+++||++|+..+
T Consensus 314 ------~~~~IG~V~~~~~ 326 (342)
T 3c9u_A 314 ------DMTEIGRVEEGEG 326 (342)
T ss_dssp ------CEEEEEEEESSSS
T ss_pred ------CCEEEEEEEcCCC
Confidence 1899999997666
No 45
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=94.58 E-value=0.067 Score=46.05 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=41.4
Q ss_pred EEEEecCCCCCChhhhHHHHHHHHcCCCcccEEEEEEEEEEeecCC
Q psy2354 78 VIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGH 123 (749)
Q Consensus 78 ~veV~PR~g~~spwSsnA~~I~~~~GL~~V~RiEr~rrY~i~~~~~ 123 (749)
.|+|.+|+|+.+|.........+.+|++ |+.+..++.|.+....+
T Consensus 7 ~V~V~lK~gVlDpqG~av~~al~~LG~~-v~~VR~gK~~~l~~~~~ 51 (84)
T 2dgb_A 7 TLLIELKKGILDPQGRAVEGVLKDLGHP-VEEVRVGKVLEIVFPAE 51 (84)
T ss_dssp EEEEEECTTSCCHHHHHHHHHHHHTTCC-CSEEEEEEEEEEEEECS
T ss_pred EEEEEECCCCcChHHHHHHHHHHHCCCC-hhhEEEEEEEEEEecCC
Confidence 4899999999999999999999999998 99999999999987643
No 46
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=91.27 E-value=0.29 Score=53.52 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=43.8
Q ss_pred CcHHHHh--hccccccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCCCCcEEEE
Q psy2354 416 SEVLELL--FAEELGWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISV 469 (749)
Q Consensus 416 ~~p~e~L--fSEe~G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~~~~~i~I 469 (749)
.++.|++ ||+--|||+.|++++.++++++++++|.++.+||+|++ +..+.+++
T Consensus 326 v~~~EM~rtFNmGiGmVlvV~~e~a~~vl~~l~~~G~~A~iIG~V~~-~~~~~V~l 380 (389)
T 3mdo_A 326 TDWSEMYKVFNMGHRMEIYIAPEHAEEVIGISKSFGIDAQIVGFVEE-ADKNELII 380 (389)
T ss_dssp CCHHHHHHHSCTTEEEEEEECGGGHHHHHHHHHHTTCCEEEEEEEEE-CSSCEEEE
T ss_pred CCHHHHHHhccCcceEEEEECHHHHHHHHHHHHHcCCCeEEEEEEEe-CCCCeEEE
Confidence 4556654 89999999999999999999999999999999999987 42234444
No 47
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=90.01 E-value=0.3 Score=53.55 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=43.5
Q ss_pred CcHHHH--hhccccccEEEEccCCHHHHHHHHHHcCCCeeEeeEeecCC-CCcEEEE
Q psy2354 416 SEVLEL--LFAEELGWLLEVTNENEAFVLEQFKAANVSCKKIGVCDAFG-MNAKISV 469 (749)
Q Consensus 416 ~~p~e~--LfSEe~G~VleV~~~~~~~v~~~~~~~gv~~~~IG~vt~~~-~~~~i~I 469 (749)
.++.|+ .||+-.|||+.|++++.++++++++++|.++.+||+|+. + ....+++
T Consensus 328 v~~~EM~rtFNmGiGmVlvV~~e~a~~vl~~L~~~G~~A~iIG~V~~-~~~~~~V~l 383 (394)
T 3kiz_A 328 TPWEEMYKVFNMGHRLEIYTDAAHAEGMIAIAKKFNIEAKIIGRVEA-PVAGKRLTI 383 (394)
T ss_dssp CCHHHHHHHSCTTEEEEEEECHHHHHHHHHHHHHTTCCEEEEEEEES-CBTTBSEEE
T ss_pred CCHHHHHHhcCCcccEEEEECHHHHHHHHHHHHHcCCCeEEEEEEec-CCCCCeEEE
Confidence 455554 489999999999999999999999999999999999987 4 2344444
No 48
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=88.81 E-value=0.87 Score=49.89 Aligned_cols=90 Identities=9% Similarity=0.204 Sum_probs=67.8
Q ss_pred CEEEEcccCcccccccccccccC-CCceEEecccccCC--------CCcChhhhc--ccccccccccccCcccHHHHHHH
Q psy2354 273 PIESIHDQGAGGNGNVLKEIVEP-VGAVVFTESFLLGD--------PSISTLELW--GAEYQENNALLCKPLHCKTLRMI 341 (749)
Q Consensus 273 ~i~~i~D~GaGG~~na~~El~~~-~G~~i~l~~v~~~~--------~~ms~~eI~--~sEsQEr~~l~v~~~~~~~~~~i 341 (749)
.|++++|.=.||+.+ +.++.+. ++ .|+.+..|.-. -++++.|++ .|+ ==.|+++|+|++.+.+.++
T Consensus 282 ~I~gmaHITGGGl~~-~~R~lp~~~~-~I~~~~wpvppiF~~l~~~G~v~~~EM~rtFNm-GiGmVlvV~~e~a~~vl~~ 358 (394)
T 3kiz_A 282 KLDGVVHCSGGGQTK-VLHFTDATTH-IIKDNLFDVPPLFQLIQGQSNTPWEEMYKVFNM-GHRLEIYTDAAHAEGMIAI 358 (394)
T ss_dssp CCSEEEECCTTGGGG-GGGGCCTTCE-EEECSCCCCCHHHHHHHHHHTCCHHHHHHHSCT-TEEEEEEECHHHHHHHHHH
T ss_pred cceEeeccCccchhh-hhhhcCCccE-EEcCCCCCCCHHHHHHHHhCCCCHHHHHHhcCC-cccEEEEECHHHHHHHHHH
Confidence 799999998899988 5577765 65 78888777632 145565555 111 0269999999999999999
Q ss_pred HhhcCCCeEEEEEEeCC---CCEEEEe
Q psy2354 342 SAREKCPVQFVGVVTGS---NKIVLAE 365 (749)
Q Consensus 342 ~~re~~~~~vVG~~T~~---~~l~~~~ 365 (749)
.+..+.++.+||+++.. +++++..
T Consensus 359 L~~~G~~A~iIG~V~~~~~~~~V~l~t 385 (394)
T 3kiz_A 359 AKKFNIEAKIIGRVEAPVAGKRLTITG 385 (394)
T ss_dssp HHHTTCCEEEEEEEESCBTTBSEEEEC
T ss_pred HHHcCCCeEEEEEEecCCCCCeEEEEe
Confidence 99899999999999854 4566654
No 49
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=88.01 E-value=0.5 Score=46.58 Aligned_cols=18 Identities=33% Similarity=0.635 Sum_probs=15.7
Q ss_pred CCCCeeEeeechhhhhhc
Q psy2354 566 RSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~~ 583 (749)
+.+..+||||+|+|+|+.
T Consensus 70 ~~~~PvlGIClG~QlL~~ 87 (211)
T 4gud_A 70 RVEKPLLGICLGMQLLGK 87 (211)
T ss_dssp HCCSCEEEETHHHHTTSS
T ss_pred HcCCCEEEEchhHhHHHH
Confidence 357899999999999984
No 50
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=87.94 E-value=0.38 Score=55.18 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=18.2
Q ss_pred HHHHHhCCCCeeEeeechhhhhhc
Q psy2354 560 LNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 560 f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+.+.+...+..+||||+|+|+|+.
T Consensus 75 l~~~a~~~g~PvLGIC~G~QlLa~ 98 (556)
T 3uow_A 75 VFEYFLEKKIPIFGICYGMQEIAV 98 (556)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHHH
T ss_pred HHHHhhhcCCCEEEECHHHHHHHH
Confidence 333333457999999999999994
No 51
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=86.31 E-value=0.69 Score=52.64 Aligned_cols=61 Identities=23% Similarity=0.578 Sum_probs=38.6
Q ss_pred CCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCc-------eeeEE
Q psy2354 567 SDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENS-------VLGVW 639 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gs-------vlpi~ 639 (749)
.+..+||||.|+|+|+.. ++ |. ..++.. -|--|..+.+.. ++.+++++... .+.+|
T Consensus 81 ~~~PvLGIC~G~Qlla~~--lG---G~---------V~~~~~--~e~G~~~v~~~~-~~~l~~~l~~~~~~~~~~~~~v~ 143 (527)
T 3tqi_A 81 IGCPVLGICYGMQTMAYQ--LG---GK---------VNRTAK--AEFGHAQLRVLN-PAFLFDGIEDQVSPQGEPLLDVW 143 (527)
T ss_dssp SSSCEEEETHHHHHHHHH--SS---SC---------BC-------CEEEEEEEESS-CTTTTSSCCSBCCTTSCCEEEEE
T ss_pred cCCCEEEEChHHHHHHHH--cC---Ce---------EEeCCC--ccccceEEEEcC-CChhhcCCccccccccccceEEE
Confidence 478999999999999843 12 21 222222 244566666653 45678888653 68899
Q ss_pred eeccc
Q psy2354 640 VAHGE 644 (749)
Q Consensus 640 vaHGe 644 (749)
.+|+.
T Consensus 144 ~~H~d 148 (527)
T 3tqi_A 144 MSHGD 148 (527)
T ss_dssp EESSS
T ss_pred EEccc
Confidence 99985
No 52
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=85.26 E-value=0.51 Score=47.23 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+.+.+.+++++.+..+||||.|+|+|+.
T Consensus 67 ~~~~~i~~~~~~~g~PilGIC~G~QlL~~ 95 (227)
T 2abw_A 67 TLYNALVHFIHVLKKPIWGTCAGCILLSK 95 (227)
T ss_dssp HHHHHHHHHHHTSCCCEEEETHHHHHTEE
T ss_pred HHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 46777888886547999999999999984
No 53
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=85.20 E-value=1.1 Score=45.96 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=42.9
Q ss_pred HHHHHHhCCCCeeEeeechhhhhhcc--CccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCcee
Q psy2354 559 QLNKFIARSDTFSFGVCNGCQLMNLL--GWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVL 636 (749)
Q Consensus 559 ~f~~f~~r~dtf~LGICnGcQ~L~~~--~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvl 636 (749)
.++.+++ .+..+||||.|+|+|+.. |-+...-+. ..-+ .+.++.....+-.|..|++.+ .+.+++++.. .+
T Consensus 100 lir~a~~-~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~--~~~~--~~~h~~~~~~~~g~~~v~~~~-~s~l~~~~~~-~~ 172 (254)
T 3fij_A 100 LVRAALD-AGKPIFAICRGMQLVNVALGGTLYQDISQ--VETK--ALQHLQRVDEQLGSHTIDIEP-TSELAKHHPN-KK 172 (254)
T ss_dssp HHHHHHH-TTCCEEEETHHHHHHHHHTTCCEESSGGG--SSSC--CCCCBCCSCTTSCCEEEEECT-TSSGGGTCCT-TE
T ss_pred HHHHHHH-cCCCEEEECHHHHHHHHHhCCceeccccc--ccCc--cccccCCCCCccceEEEEeCC-CChHHHhcCC-cE
Confidence 3444443 579999999999999843 222110000 0001 233332223344566777753 4567776643 57
Q ss_pred eEEeeccc
Q psy2354 637 GVWVAHGE 644 (749)
Q Consensus 637 pi~vaHGe 644 (749)
.++..|+.
T Consensus 173 ~v~~~H~~ 180 (254)
T 3fij_A 173 LVNSLHHQ 180 (254)
T ss_dssp EECCBCSC
T ss_pred EEEEeccc
Confidence 77777864
No 54
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=83.90 E-value=1.9 Score=43.41 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCC--CcccccCCCC
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKS--PAIMLRNLEN 633 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s--~Sv~l~gm~G 633 (749)
..+.+.++++ .++.+||||.|.|+|+.. ++ |. ..++. .-+--|..|++... .+.+++++.
T Consensus 73 ~~~~i~~~~~-~~~PvLGIClG~QlL~~~--~G---g~---------v~~~~--~~~~G~~~v~~~~~~~~~~l~~~~~- 134 (236)
T 3l7n_A 73 EVKLIQKAAK-SEKIIVGVCLGAQLMGVA--YG---AD---------YLHSP--KKEIGNYLISLTEAGKMDSYLSDFS- 134 (236)
T ss_dssp HHHHHHHHHH-TTCEEEEETHHHHHHHHH--TT---CC---------CEEEE--EEEEEEEEEEECTTGGGCGGGTTSC-
T ss_pred HHHHHHHHHH-cCCCEEEEchHHHHHHHH--hC---CE---------EecCC--CceeeeEEEEEccCcccChHHhcCC-
Confidence 3455556565 479999999999999843 11 11 11111 12344666766432 466777765
Q ss_pred ceeeEEeeccc
Q psy2354 634 SVLGVWVAHGE 644 (749)
Q Consensus 634 svlpi~vaHGe 644 (749)
..+.++..|++
T Consensus 135 ~~~~v~~~H~~ 145 (236)
T 3l7n_A 135 DDLLVGHWHGD 145 (236)
T ss_dssp SEEEEEEEEEE
T ss_pred CCcEEEEecCC
Confidence 34667777863
No 55
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=82.96 E-value=0.65 Score=44.89 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 554 EGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 554 ~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.+.+.++.++.+..+||||.|+|+|+.
T Consensus 60 ~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~ 89 (191)
T 2ywd_A 60 YGIEDEVRKRVEEGSLALFGTCAGAIWLAK 89 (191)
T ss_dssp TTHHHHHHHHHHTTCCEEEEETHHHHHHEE
T ss_pred hhHHHHHHHHHHCCCCeEEEECHHHHHHHH
Confidence 345667777775433899999999999984
No 56
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=82.75 E-value=2.3 Score=46.56 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=64.3
Q ss_pred CEEEEcccCcccccccccccccCCCceEEecccccCC--------CCcChhhhc--ccccccccccccCcccHHHHHHHH
Q psy2354 273 PIESIHDQGAGGNGNVLKEIVEPVGAVVFTESFLLGD--------PSISTLELW--GAEYQENNALLCKPLHCKTLRMIS 342 (749)
Q Consensus 273 ~i~~i~D~GaGG~~na~~El~~~~G~~i~l~~v~~~~--------~~ms~~eI~--~sEsQEr~~l~v~~~~~~~~~~i~ 342 (749)
.|.+++|.=-||+.+.+.++ +.. +.++.+..|... -++++.|++ -|+ ==.|+++|+|++.+.+.++.
T Consensus 281 ~V~gmaHITGGGl~~~lr~~-~~~-~~i~~~~wpvppiF~~l~~~G~v~~~EM~rtFNm-GiGmVlvV~~e~a~~vl~~l 357 (389)
T 3mdo_A 281 QIHGMVHCSGGAQTKVMHFV-ENK-RVTKDNLFPIPPLFRTIQEQSGTDWSEMYKVFNM-GHRMEIYIAPEHAEEVIGIS 357 (389)
T ss_dssp GCCEEEECCTTGGGGGGGGC-SSE-EEEECSCCCCCHHHHHHHHHHCCCHHHHHHHSCT-TEEEEEEECGGGHHHHHHHH
T ss_pred cceEEeeccCcChhhhhhhc-CCc-EEecCCCCCCCHHHHHHHHhcCCCHHHHHHhccC-cceEEEEECHHHHHHHHHHH
Confidence 69999999999998888665 543 366666665522 035555554 111 01599999999999999998
Q ss_pred hhcCCCeEEEEEEeCCC--CEEEEe
Q psy2354 343 AREKCPVQFVGVVTGSN--KIVLAE 365 (749)
Q Consensus 343 ~re~~~~~vVG~~T~~~--~l~~~~ 365 (749)
+..+.++.+||+++... .+++..
T Consensus 358 ~~~G~~A~iIG~V~~~~~~~V~l~t 382 (389)
T 3mdo_A 358 KSFGIDAQIVGFVEEADKNELIIES 382 (389)
T ss_dssp HHTTCCEEEEEEEEECSSCEEEEEE
T ss_pred HHcCCCeEEEEEEEeCCCCeEEEEe
Confidence 88899999999998443 466654
No 57
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=82.50 E-value=1.2 Score=44.69 Aligned_cols=61 Identities=21% Similarity=0.389 Sum_probs=37.7
Q ss_pred CCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeecccc
Q psy2354 567 SDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEV 645 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeG 645 (749)
.+..+||||.|+|+|+.. ++ |. +.++... +..|..+++. ..+.+++++.. ...++..|+..
T Consensus 95 ~~~PilGIC~G~Qll~~~--~G---G~---------v~~~~~~--~~G~~~v~~~-~~~~l~~~l~~-~~~v~~~H~~~ 155 (218)
T 2vpi_A 95 IGKPVLGICYGMQMMNKV--FG---GT---------VHKKSVR--EDGVFNISVD-NTCSLFRGLQK-EEVVLLTHGDS 155 (218)
T ss_dssp SSCCEEEETHHHHHHHHH--TT---CC---------EEEEEEC--SCEEEEEEEC-TTSGGGTTCCS-EEEEEECSEEE
T ss_pred cCCCEEEEcHHHHHHHHH--hC---Cc---------eEeCCCC--cccEEEEEEc-cCChhHhcCCC-CcEEeehhhhH
Confidence 578999999999999852 22 21 2222211 2335556664 35778888753 35677788743
No 58
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=82.30 E-value=1.5 Score=49.76 Aligned_cols=62 Identities=29% Similarity=0.638 Sum_probs=39.8
Q ss_pred CCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCc-------eeeEE
Q psy2354 567 SDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENS-------VLGVW 639 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gs-------vlpi~ 639 (749)
.+..+||||.|+|+|+.. .+ | +..++. .-|--|..+.+.. .+.+++++... ...+|
T Consensus 78 ~g~PvLGIC~G~Qlla~~--~G---G---------~V~~~~--~~e~G~~~v~~~~-~~~L~~~l~~~~~~~~~~~~~v~ 140 (525)
T 1gpm_A 78 AGVPVFGVCYGMQTMAMQ--LG---G---------HVEASN--EREFGYAQVEVVN-DSALVRGIEDALTADGKPLLDVW 140 (525)
T ss_dssp SSSCEEEETHHHHHHHHH--HT---C---------EEECCS--SCEEEEEEEEECS-CCTTTTTCCSEECTTSCEEEEEE
T ss_pred CCCCEEEEChHHHHHHHH--cC---C---------EEEeCC--CcccceEEEEeCC-CCHhhccCccccccccccceEEE
Confidence 478999999999999842 11 1 111111 1244566676643 46788887542 67899
Q ss_pred eecccc
Q psy2354 640 VAHGEV 645 (749)
Q Consensus 640 vaHGeG 645 (749)
.+|+..
T Consensus 141 ~~H~~~ 146 (525)
T 1gpm_A 141 MSHGDK 146 (525)
T ss_dssp EEECSE
T ss_pred EEccce
Confidence 999864
No 59
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=80.86 E-value=1.1 Score=50.51 Aligned_cols=60 Identities=23% Similarity=0.421 Sum_probs=37.1
Q ss_pred CCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeecccc
Q psy2354 567 SDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEV 645 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeG 645 (749)
.+..+||||.|+|+|+.. .+ |. ..++. .-|--|..+.+.. +.+++++. ....+|.+|+..
T Consensus 70 ~~~PvLGIC~G~Qlla~~--~G---G~---------v~~~~--~~e~G~~~v~~~~--~~l~~~~~-~~~~v~~~H~~~ 129 (503)
T 2ywb_A 70 SGLPLLGICYGMQLLAQE--LG---GR---------VERAG--RAEYGKALLTRHE--GPLFRGLE-GEVQVWMSHQDA 129 (503)
T ss_dssp SSCCEEEETHHHHHHHHT--TT---CE---------EECC-----CEEEEECSEEC--SGGGTTCC-SCCEEEEECSCE
T ss_pred CCCCEEEECHHHHHHHHH--hC---Ce---------EeeCC--CCccceEEEEecC--cHHhhcCC-CccEEEEECCCc
Confidence 578999999999999843 11 11 11111 1233455555543 67888874 357789999864
No 60
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=77.51 E-value=1.8 Score=50.90 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=36.6
Q ss_pred CCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeecccc
Q psy2354 567 SDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEV 645 (749)
Q Consensus 567 ~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGeG 645 (749)
.+..+||||.|+|+|+.. ++ |. ..++.. -|..|..+++. ..+.+++++.. ...+|.+|+..
T Consensus 100 ~g~PvLGIC~G~QlLa~~--lG---G~---------v~~~~~--~e~G~~~v~~~-~~~~Lf~~l~~-~~~v~~~H~~~ 160 (697)
T 2vxo_A 100 IGKPVLGICYGMQMMNKV--FG---GT---------VHKKSV--REDGVFNISVD-NTCSLFRGLQK-EEVVLLTHGDS 160 (697)
T ss_dssp SSCCEEEEEHHHHHHHHH--TT---CC---------BCC---------CEEEEEC-TTSGGGTTCCS-EEEECCCSSCC
T ss_pred CCCCEEEECHHHHHHHHH--hC---Ce---------EeecCC--CccceEEEEec-CCChhhhcCCc-cCcceeecccc
Confidence 568999999999999852 12 11 111111 13335566664 34678888753 46789999864
No 61
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=77.27 E-value=0.97 Score=45.05 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+.+.++++++ .++.+||||.|+|+|+.
T Consensus 83 ~~~~i~~~~~-~~~PilGIC~G~QlL~~ 109 (219)
T 1q7r_A 83 LMEPLKQFAA-AGKPMFGTCAGLILLAK 109 (219)
T ss_dssp CHHHHHHHHH-TTCCEEEETTHHHHHEE
T ss_pred HHHHHHHHHH-cCCeEEEECHHHHHHHH
Confidence 4556666665 47899999999999984
No 62
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=77.25 E-value=0.91 Score=44.83 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+.+.+.++++ .++.+||||.|+|+|+.
T Consensus 79 ~~~~~i~~~~~-~g~PilGIC~G~QlL~~ 106 (208)
T 2iss_D 79 DMDEKLVERIN-NGLPVFATCAGVILLAK 106 (208)
T ss_dssp TCHHHHHHHHH-TTCCEEEETHHHHHHEE
T ss_pred hHHHHHHHHHH-CCCeEEEECHHHHHHHH
Confidence 35566677765 47999999999999984
No 63
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=75.43 E-value=1.2 Score=43.39 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+.+.+.++++ .++.+||||.|+|+|+.
T Consensus 60 ~~~~~i~~~~~-~~~pilgIC~G~q~l~~ 87 (196)
T 2nv0_A 60 QFMEPLREFAA-QGKPMFGTCAGLIILAK 87 (196)
T ss_dssp TCHHHHHHHHH-TTCCEEEETHHHHHHSB
T ss_pred HHHHHHHHHHH-CCCcEEEECHHHHHHHH
Confidence 34566666665 47899999999999984
No 64
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=73.91 E-value=1.6 Score=42.67 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+.+.+.++++ .+..+||||.|+|+|+.
T Consensus 66 ~~~~i~~~~~-~~~PilGIC~G~Qll~~ 92 (201)
T 1gpw_B 66 LIDFVRKHVE-DERYVVGVCLGMQLLFE 92 (201)
T ss_dssp CHHHHHHHHH-TTCEEEEETHHHHTTSS
T ss_pred HHHHHHHHHH-cCCeEEEEChhHHHHHH
Confidence 3455666664 46999999999999984
No 65
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=73.41 E-value=1.7 Score=42.40 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=36.9
Q ss_pred CCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCc--ccccCCCCceeeEEeecc
Q psy2354 566 RSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPA--IMLRNLENSVLGVWVAHG 643 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~S--v~l~gm~Gsvlpi~vaHG 643 (749)
+.+..+||||.|+|+|+.. ++ |. +.++.. ....+|..++... .+ .+++++. ..+.++..|+
T Consensus 75 ~~~~PvLGIC~G~QlL~~~--~g---g~---------v~~~~~-~~~g~~~~v~~~~-~~~~~l~~~~~-~~~~v~~~H~ 137 (195)
T 1qdl_B 75 GKRTPILGVCLGHQAIGYA--FG---AK---------IRRARK-VFHGKISNIILVN-NSPLSLYYGIA-KEFKATRYHS 137 (195)
T ss_dssp TTTSCEEEETHHHHHHHHH--TT---CE---------EEEEEE-EEEEEEEEEEECC-SSCCSTTTTCC-SEEEEEEEEE
T ss_pred cCCCcEEEEehHHHHHHHH--hC---CE---------EeccCC-CcCCCceEEEECC-CCHhHHHhcCC-CceEEecccc
Confidence 4689999999999999843 21 11 111111 1224455565532 34 6777774 4577777886
Q ss_pred c
Q psy2354 644 E 644 (749)
Q Consensus 644 e 644 (749)
.
T Consensus 138 ~ 138 (195)
T 1qdl_B 138 L 138 (195)
T ss_dssp E
T ss_pred c
Confidence 4
No 66
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=73.36 E-value=1.8 Score=45.91 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCC-CCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARS-DTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~-dtf~LGICnGcQ~L~~ 583 (749)
+.+.+.++.+.. +..+||||.|+|+|+.
T Consensus 111 l~~~~~~~~~~g~~~PiLGIC~G~Qll~~ 139 (315)
T 1l9x_A 111 FYNLSIQSFDDGDYFPVWGTCLGFEELSL 139 (315)
T ss_dssp HHHHHHHHHHTTCCCCEEEETHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEChHHHHHHH
Confidence 445555666555 6899999999999983
No 67
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=72.47 E-value=1.4 Score=43.12 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 555 GIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 555 ~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
.+.+.++++++ .+..+||||.|+|+|+..
T Consensus 63 ~~~~~i~~~~~-~~~PilGIC~G~Qll~~~ 91 (200)
T 1ka9_H 63 GFVERVRRHLE-RGLPFLGICVGMQVLYEG 91 (200)
T ss_dssp CTHHHHHHHHH-TTCCEEECTHHHHTTSSE
T ss_pred CHHHHHHHHHH-cCCeEEEEcHHHHHHHHh
Confidence 35566667775 469999999999999953
No 68
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=72.15 E-value=1.7 Score=42.29 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=17.9
Q ss_pred HHHHHhCCCCeeEeeechhhhhhc
Q psy2354 560 LNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 560 f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+.+.++ .+..+||||.|+|+|+.
T Consensus 69 l~~~~~-~~~PilGIC~G~Qll~~ 91 (192)
T 1i1q_B 69 LLTRLR-GKLPIIGICLGHQAIVE 91 (192)
T ss_dssp HHHHHB-TTBCEEEETHHHHHHHH
T ss_pred HHHHHh-cCCCEEEECcChHHHHH
Confidence 334443 57999999999999984
No 69
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=71.93 E-value=1.7 Score=43.98 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCce
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSV 635 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsv 635 (749)
..+.++++++ .++.+||||.|+|+|+.. .+ | ++.++..+ .+--|..|++. ..+.+++++.. .
T Consensus 82 ~~~~i~~~~~-~~~PiLGIC~G~QlL~~a--lG---G---------~v~~~~~g-~~~G~~~v~~~-~~~~l~~~~~~-~ 143 (239)
T 1o1y_A 82 EFQLIEEILK-KEIPFLGICLGSQMLAKV--LG---A---------SVYRGKNG-EEIGWYFVEKV-SDNKFFREFPD-R 143 (239)
T ss_dssp HHHHHHHHHH-HTCCEEEETHHHHHHHHH--TT---C---------CEEECTTC-CEEEEEEEEEC-CCCGGGTTSCS-E
T ss_pred HHHHHHHHHH-CCCCEEEEchhHHHHHHH--cC---C---------eEecCCCC-CccccEEEEEC-CCCchHHhCCC-C
Confidence 3445555554 368999999999999843 11 1 12222221 23346666643 34567777643 3
Q ss_pred eeEEeeccc
Q psy2354 636 LGVWVAHGE 644 (749)
Q Consensus 636 lpi~vaHGe 644 (749)
+.+.-.|+.
T Consensus 144 ~~~~~~H~~ 152 (239)
T 1o1y_A 144 LRVFQWHGD 152 (239)
T ss_dssp EEEEEEESE
T ss_pred ceeEeecCC
Confidence 556666764
No 70
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=70.99 E-value=1.8 Score=42.93 Aligned_cols=61 Identities=23% Similarity=0.449 Sum_probs=37.1
Q ss_pred CCCCeeEeeechhhhhhccCccccCcCCcCcccccccccccCCCcceeeeEEEEecCCCcccccCCCCceeeEEeeccc
Q psy2354 566 RSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGE 644 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~~~~lIp~~~g~~~~~~p~~~~~~N~s~rfEsr~~~V~I~~s~Sv~l~gm~Gsvlpi~vaHGe 644 (749)
..+..+||||.|+|+|+.. ++ |. +.++. +-+-.|..+.+.. .+.+++++. ..+.++..|+.
T Consensus 83 ~~~~PiLGIC~G~Qll~~~--lG---g~---------v~~~~--~~~~G~~~v~~~~-~~~l~~~~~-~~~~v~~~H~~ 143 (212)
T 2a9v_A 83 DHNYPILGICVGAQFIALH--FG---AS---------VVKAK--HPEFGKTKVSVMH-SENIFGGLP-SEITVWENHND 143 (212)
T ss_dssp HCCSCEEEETHHHHHHHHH--TT---CE---------EEEEE--EEEEEEEEEEESC-CCGGGTTCC-SEEEEEEEEEE
T ss_pred hCCCCEEEEChHHHHHHHH--hC---CE---------EEcCC--CcccCceeeEECC-CChhHhcCC-CceEEEeEhhh
Confidence 4679999999999999843 11 11 11111 1234566666643 566777775 34667777864
No 71
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=70.25 E-value=3.6 Score=39.98 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=33.7
Q ss_pred HhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 548 ASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 548 ~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
..+..++.+.+.+++|+++ ++.+.|||.|.|+|+..|++.
T Consensus 99 ~~l~~~~~l~~~l~~~~~~-gk~i~aIC~G~~lLa~aGLL~ 138 (193)
T 1oi4_A 99 DYLRGDNRFVTFTRDFVNS-GKPVFAICHGPQLLISADVIR 138 (193)
T ss_dssp HHHTTSHHHHHHHHHHHHT-TCCEEEETTTHHHHHHHTCCT
T ss_pred HHhhhCHHHHHHHHHHHHc-CCEEEEECHHHHHHHHCCccC
Confidence 3444678888888888864 689999999999999999997
No 72
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=67.82 E-value=2.3 Score=40.93 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.7
Q ss_pred CCCCeeEeeechhhhhhcc
Q psy2354 566 RSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 566 r~dtf~LGICnGcQ~L~~~ 584 (749)
..+..+||||.|+|+|+..
T Consensus 66 ~~~~PilGIC~G~Qll~~~ 84 (186)
T 2ywj_A 66 NSNLPILGTCAGMVLLSKG 84 (186)
T ss_dssp TCCCCEEEETHHHHHHSSC
T ss_pred hcCCcEEEECHHHHHHHHH
Confidence 6789999999999999843
No 73
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=66.92 E-value=3 Score=43.63 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.+..+++ .+..+||||.|+|+|+.
T Consensus 108 ~~~~i~~~~~-~~~PilGIC~G~Q~l~~ 134 (289)
T 2v4u_A 108 KLQAISWART-KKIPFLGVXLGMQLAVI 134 (289)
T ss_dssp HHHHHHHHHH-TTCCEEEETHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcEEEECccHHHHHH
Confidence 4455566664 46899999999999984
No 74
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=66.43 E-value=2.6 Score=45.98 Aligned_cols=27 Identities=41% Similarity=0.725 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.+++++++ +..+||||.|+|+|+.
T Consensus 250 ~~~~Ir~~~~~-~~PILGIClG~QLLa~ 276 (379)
T 1a9x_B 250 AITAIQKFLET-DIPVFGICLGHQLLAL 276 (379)
T ss_dssp HHHHHHHHTTS-CCCEEEETHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCEEEECchHHHHHH
Confidence 44556666654 7899999999999984
No 75
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=64.22 E-value=2.4 Score=40.98 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 557 KTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 557 ~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+.++++. +.++.+||||.|+|+|+.
T Consensus 62 ~~~i~~~~-~~~~PilGIC~G~Q~l~~ 87 (189)
T 1wl8_A 62 EKVLEHYD-EFNVPILGICLGHQLIAK 87 (189)
T ss_dssp HHHHHTGG-GTCSCEEEETHHHHHHHH
T ss_pred HHHHHHHh-hCCCeEEEEcHHHHHHHH
Confidence 34444333 467999999999999984
No 76
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=61.98 E-value=3.7 Score=42.07 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
..+.+.++++ .++.+||||.|+|+|+.
T Consensus 71 ~~~~i~~~~~-~~~PvlGIC~G~Qll~~ 97 (250)
T 3m3p_A 71 LLALIRDAVA-QRVPVIGHCLGGQLLAK 97 (250)
T ss_dssp HHHHHHHHHH-HTCCEEEETHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCEEEECHHHHHHHH
Confidence 3444555554 47899999999999984
No 77
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=61.00 E-value=8 Score=36.24 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=34.1
Q ss_pred HhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 548 ASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 548 ~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
..+..|+.+.+.+++++++ ++.+.+||.|.++|+..|++.
T Consensus 76 ~~~~~~~~l~~~l~~~~~~-~k~i~aiC~G~~~La~aGlL~ 115 (168)
T 3l18_A 76 EIVRLNEKAVMITRRMFED-DKPVASICHGPQILISAKVLK 115 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHT-TCCEEEETTTHHHHHHTTCCT
T ss_pred HHhccCHHHHHHHHHHHHC-CCEEEEECHhHHHHHHCCccC
Confidence 3456788898888888864 689999999999999999987
No 78
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=58.20 E-value=3.3 Score=42.90 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=18.0
Q ss_pred HHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 559 QLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 559 ~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+..+++ .+..+||||.|+|+|+.
T Consensus 88 ~i~~~~~-~~~PilGIC~G~Qll~~ 111 (273)
T 2w7t_A 88 AAQVARM-NNIPYFGVXLGMQVAVI 111 (273)
T ss_dssp HHHHHHH-HTCCEEEETHHHHHHHH
T ss_pred HHHHHHH-CCCcEEEECcCHHHHHH
Confidence 3444443 46899999999999984
No 79
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=53.79 E-value=11 Score=36.45 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=34.7
Q ss_pred HHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 546 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 546 wa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
+...+..++.+.+.+++++++ ++.+.+||.|.++|+..|++.
T Consensus 78 ~~~~l~~~~~~~~~l~~~~~~-gk~i~aiC~G~~~La~aGll~ 119 (197)
T 2rk3_A 78 GAQNLSESAAVKEILKEQENR-KGLIATICAGPTALLAHEIGF 119 (197)
T ss_dssp HHHHHHHCHHHHHHHHHHHHT-TCEEEEETTTHHHHHHTTCST
T ss_pred hHHHhhhCHHHHHHHHHHHHc-CCEEEEECHHHHHHHHCCCCC
Confidence 344455688888888888864 689999999999999999986
No 80
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=47.47 E-value=7 Score=44.64 Aligned_cols=24 Identities=17% Similarity=0.240 Sum_probs=17.9
Q ss_pred HHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 559 QLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 559 ~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+..+++ .+..+||||.|+|+|+.
T Consensus 376 ~ir~a~e-~~iPiLGICLGmQlL~~ 399 (550)
T 1vco_A 376 AAQYARE-RKIPYLGICLGLQIAVI 399 (550)
T ss_dssp HHHHHHH-TTCCEEEETHHHHHHHH
T ss_pred HHHHHHH-CCCcEEEECcCHHHHHH
Confidence 3344443 46899999999999983
No 81
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=46.55 E-value=16 Score=34.87 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=33.0
Q ss_pred HhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 548 ASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 548 ~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
..+..++.+.+.+++|++ .++.+.+||.|.++|+..|++.
T Consensus 89 ~~~~~~~~l~~~l~~~~~-~gk~i~aiC~G~~~La~aGlL~ 128 (190)
T 2vrn_A 89 DKLRLEEGAMKFVRDMYD-AGKPIAAICHGPWSLSETGIAQ 128 (190)
T ss_dssp HHHTTCHHHHHHHHHHHH-TTCCEEEC-CTTHHHHHTTTTT
T ss_pred HHHhhCHHHHHHHHHHHH-cCCEEEEECHhHHHHHhCcccC
Confidence 345568889998988886 4689999999999999999997
No 82
>1uf2_K Structural protein P7; virus components, icosahedral virus; 3.50A {Rice dwarf virus}
Probab=46.15 E-value=8.2 Score=41.88 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=41.4
Q ss_pred cCCccccccee--eEE----------EEeeCCcccc---ccccccccccCCCCccCCCCccccCChHHHHHH
Q psy2354 201 LCKPLHCKTLR--MIS----------AREKCPVQFV---GVVTGSNKVQGDNAADLDFDAVQRGDPEMGQKL 257 (749)
Q Consensus 201 fg~p~~~g~~r--m~~----------v~~Gg~~~r~---G~gG~Ss~~~~~~~~~~~~~aVQ~gnp~~e~~~ 257 (749)
||-|-|+|.|| .|+ .++|-|.|-. -++.+||.++.+..++.|.+.+--=|..|-+..
T Consensus 107 fgvpfiQGAFrH~vISs~G~~tslLiLVvgPPsgF~~k~~V~SasS~V~v~sna~IdL~d~V~iNs~M~~~T 178 (506)
T 1uf2_K 107 FNTPFIQGAFRHRIISSMGPEISYLVMVIGPPSGFMDTPNVSSAQSSVHTVSNADVDLNDIIAINSTMAKST 178 (506)
T ss_pred hCchhhhhHHHhhHHhhcCCcceEEEEEEcCCcccccccccccccceEEecccCccchhhhhhhhHHHhhcC
Confidence 99999999999 222 6677776543 344457777777778898888877777776653
No 83
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=44.93 E-value=8.1 Score=44.07 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 558 TQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 558 ~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+.+..+++ .+..+||||.|+|+|+.
T Consensus 363 ~~i~~a~~-~~~PiLGIClG~Qll~v 387 (545)
T 1s1m_A 363 TTARFARE-NNIPYLGICLGMQVALI 387 (545)
T ss_dssp HHHHHHHH-TTCCEEEETHHHHHHHH
T ss_pred HHHHHHHH-CCCcEEEECChHHHHHH
Confidence 34444554 46899999999999983
No 84
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.21 E-value=12 Score=37.01 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=28.6
Q ss_pred HHHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 546 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 546 wa~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
.+...|....+.+.+.+++++ ++..+|+|-|.|+|+.
T Consensus 92 ~l~~~L~~~gl~~~l~~~~~~-G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 92 FLLQELKRTGADKLILEEIAA-GKLYIGESAGAVITSP 128 (206)
T ss_dssp HHHHHHHHHTHHHHHHHHHHT-TCEEEEETHHHHTTSS
T ss_pred HHHHHHHHCChHHHHHHHHHc-CCeEEEECHHHHHhcc
Confidence 344555555678888888865 7999999999999873
No 85
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=43.66 E-value=20 Score=34.34 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=34.5
Q ss_pred HHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 547 AASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 547 a~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
...+..|+.+.+.++++++ .++.+.+||.|.++|+..|++.
T Consensus 80 ~~~~~~~~~~~~~l~~~~~-~~k~i~aiC~G~~~La~aGlL~ 120 (190)
T 4e08_A 80 SNAMGESSLVGDLLRSQES-GGGLIAAICAAPTVLAKHGVAS 120 (190)
T ss_dssp HHHHHHCHHHHHHHHHHHH-TTCEEEEETTTHHHHHHTTCST
T ss_pred HHHhhhCHHHHHHHHHHHH-CCCEEEEECHHHHHHHHCCCcC
Confidence 3445578888888888886 4689999999999999999987
No 86
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=41.19 E-value=12 Score=42.70 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 556 IKTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 556 ~~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
+.+.+.++++ .+..+||||.|+|+|+.
T Consensus 68 ~~~~i~~~~~-~g~PiLGIC~G~QlL~~ 94 (555)
T 1jvn_A 68 FEKPIREYIE-SGKPIMGIXVGLQALFA 94 (555)
T ss_dssp CHHHHHHHHH-TTCCEEEEEHHHHTTEE
T ss_pred HHHHHHHHHH-cCCcEEEEchhhhhhhh
Confidence 3455666664 46899999999999994
No 87
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=39.60 E-value=17 Score=34.17 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=30.6
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
.|+.+.+.+++|++ .++.+.+||.|.++|+..|++.
T Consensus 89 ~~~~~~~~l~~~~~-~gk~i~aiC~G~~~La~aGlL~ 124 (175)
T 3cne_A 89 YNVDLMEVIKTFGE-KGKMMIGHCAGAMMFDFTGITK 124 (175)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEETTHHHHHHHTTTTT
T ss_pred cCHHHHHHHHHHHH-CCCEEEEECHHHHHHHHCCCcC
Confidence 45678888888886 4689999999999999999987
No 88
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=38.40 E-value=14 Score=43.08 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCCeeEeeechhhhhhc
Q psy2354 557 KTQLNKFIARSDTFSFGVCNGCQLMNL 583 (749)
Q Consensus 557 ~~~f~~f~~r~dtf~LGICnGcQ~L~~ 583 (749)
++.+...++ .+..+||||.|+|+|+.
T Consensus 511 ~~lI~~a~~-~~iPiLGIClG~QlLa~ 536 (645)
T 3r75_A 511 YAWLRHLID-EGKPFMAVCLSHQILNA 536 (645)
T ss_dssp HHHHHHHHH-HTCCEEEETHHHHHHHH
T ss_pred HHHHHHHHH-CCCCEEEECHHHHHHHH
Confidence 334444444 46899999999999983
No 89
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=36.91 E-value=11 Score=42.76 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCCeeEeeechhhhhh
Q psy2354 557 KTQLNKFIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 557 ~~~f~~f~~r~dtf~LGICnGcQ~L~ 582 (749)
.+.+..++ ..+..+||||.|+|+|+
T Consensus 369 i~~ir~a~-~~~~PiLGIClG~Qll~ 393 (535)
T 3nva_A 369 IKAIKYAR-EHNIPFLGICFGFQLSI 393 (535)
T ss_dssp HHHHHHHH-HHTCCEEEETHHHHHHH
T ss_pred HHHHHHHH-HcCCcEEEECcchhHHH
Confidence 34444444 35789999999999998
No 90
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=36.85 E-value=28 Score=33.86 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=33.2
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechh-hhhhccCccc
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGC-QLMNLLGWFS 588 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGc-Q~L~~~~lIp 588 (749)
.+..++.+.+.+++|++ .++.+.+||.|. ++|+..|++.
T Consensus 81 ~l~~~~~l~~~l~~~~~-~gk~i~aiC~G~~~lLa~aGlL~ 120 (205)
T 2ab0_A 81 CFRDSTLLVETVKQFHR-SGRIVAAICAAPATVLVPHDIFP 120 (205)
T ss_dssp HHHHCHHHHHHHHHHHH-TTCEEEEETHHHHHHTTTTTSSS
T ss_pred HhccCHHHHHHHHHHHH-cCCEEEEECHhHHHHHHHCCccC
Confidence 34567888888888886 568999999999 9999999987
No 91
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=36.42 E-value=94 Score=26.21 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=38.5
Q ss_pred EEcCCCCCChHHH---HHHhhcCCCCccEEEEEEEEEEecCCCCCH---HHHHHHH-HhhcCccccc
Q psy2354 5 RYYSKPGIGAGEK---TKKLKAVPKVISDIESELCYNIEISRELTP---VELDKLH-WILNSSFECR 64 (749)
Q Consensus 5 ~~~~~~als~~~~---l~~i~~~~~~v~sv~te~~y~V~~~~~l~~---~~~~~L~-~LL~~~~~~~ 64 (749)
..+. |...+.+- .+.+....-+|.+|++...|.++++++..+ ++.+.++ .||..|+.++
T Consensus 9 V~lK-~gVlDpqG~av~~al~~LG~~v~~VR~gK~~~l~~~~~~~~~a~~~v~~~~~~LLaNpVie~ 74 (85)
T 1gtd_A 9 IRLK-KGMLNPEAATIERALALLGYEVEDTDTTDVITFTMDEDSLEAVEREVEDMCQRLLCNPVIHD 74 (85)
T ss_dssp EEEC-TTSCCHHHHHHHHHHHHHTCCCEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTTCCTTTEE
T ss_pred EEEC-CCCcCcHHHHHHHHHHHcCCChheEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCcceE
Confidence 4445 44444333 555555222899999999999986544333 6677777 8999987664
No 92
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=36.05 E-value=99 Score=26.87 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=39.3
Q ss_pred EEEEcCCCCCChHH-H-HHHhhcC-CCCccEEEEEEEEEEecCCCC---CHHHHHHHH-HhhcCccccc
Q psy2354 3 IIRYYSKPGIGAGE-K-TKKLKAV-PKVISDIESELCYNIEISREL---TPVELDKLH-WILNSSFECR 64 (749)
Q Consensus 3 ~~~~~~~~als~~~-~-l~~i~~~-~~~v~sv~te~~y~V~~~~~l---~~~~~~~L~-~LL~~~~~~~ 64 (749)
+.+.|.+.-+.+-. + .+.+... -..|.+||+...|.+++..+- ..++++.++ .||..|+.++
T Consensus 20 V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK~~el~~~~~~~~~a~~~v~~mc~kLLaNpVIE~ 88 (94)
T 1vq3_A 20 IDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVKKACEELLVNPVVEE 88 (94)
T ss_dssp EEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHTTSCTTTEE
T ss_pred EEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeeeEEEEEecCCCHHHHHHHHHHHHHHHcCCCcceE
Confidence 34455533343322 2 5556653 457999999999999865321 156677777 8999887653
No 93
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=35.71 E-value=14 Score=37.04 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=27.5
Q ss_pred HHhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhcc
Q psy2354 547 AASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 584 (749)
Q Consensus 547 a~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~ 584 (749)
+...|....+.+.+.++++ .++..+|+|-|.|+|+..
T Consensus 93 ~~~~l~~~gl~~~l~~~~~-~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 93 LLKESRERGLLAPMADRVK-RGALYIGWSAGANLACPT 129 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCEEEEETHHHHHTSSB
T ss_pred HHHHHHHCChHHHHHHHHH-cCCEEEEECHHHHhhccc
Confidence 3444444457778888885 469999999999999853
No 94
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=35.65 E-value=20 Score=30.87 Aligned_cols=30 Identities=13% Similarity=0.418 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCC--CeeEeeechhhhhhccCccc
Q psy2354 555 GIKTQLNKFIARSD--TFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 555 ~~~~~f~~f~~r~d--tf~LGICnGcQ~L~~~~lIp 588 (749)
.+.+.+..||+.++ .+.|--||||| +.||+
T Consensus 15 ~i~~kIe~FL~s~~~~~l~l~pCN~f~----RkLIY 46 (87)
T 1ug8_A 15 QVIEKIEDFLQSEEKRSLELDPCTGFQ----RKLIY 46 (87)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCSHH----HHHHH
T ss_pred HHHHHHHHHHhCCCCCceecCCchHHH----HHHHH
Confidence 46788999997765 49999999999 66777
No 95
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=34.93 E-value=35 Score=35.85 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=17.4
Q ss_pred HHHHHhCCCCeeEeeechhhhhh
Q psy2354 560 LNKFIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 560 f~~f~~r~dtf~LGICnGcQ~L~ 582 (749)
+.++....++.+||||.|-|+++
T Consensus 127 li~~~~~~~~~~lgIC~GaQ~~l 149 (301)
T 2vdj_A 127 IMEYSKTNVTSTLHICWGAQAGL 149 (301)
T ss_dssp HHHHHHHHEEEEEEETHHHHHHH
T ss_pred HHHHHHHcCCcEEEEcHHHHHHH
Confidence 33444457899999999999954
No 96
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=34.47 E-value=30 Score=33.17 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=33.8
Q ss_pred HhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 548 ASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 548 ~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
..+..|+.+.+.+++|++ .++.+.+||.|-++|+..|++.
T Consensus 82 ~~l~~~~~~~~~l~~~~~-~~k~iaaIC~g~~~La~aGlL~ 121 (177)
T 4hcj_A 82 ITLWDDWRTQGLAKLFLD-NQKIVAGIGSGVVIMANAKILE 121 (177)
T ss_dssp GGGTTCHHHHHHHHHHHH-TTCEEEEETTHHHHHHHTTCCT
T ss_pred HHHhhCHHHHHHHHHHHH-hCCEEEEecccHHHHHHCCCCC
Confidence 346678888888888876 4689999999999999999987
No 97
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=30.70 E-value=47 Score=35.12 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=17.6
Q ss_pred HHHHHhCCCCeeEeeechhhhhh
Q psy2354 560 LNKFIARSDTFSFGVCNGCQLMN 582 (749)
Q Consensus 560 f~~f~~r~dtf~LGICnGcQ~L~ 582 (749)
+.++....++.+||||.|-|+++
T Consensus 139 li~~~~~~~~p~LGIC~GaQ~~l 161 (312)
T 2h2w_A 139 IMEWSRHNVYSTMFICWAAQAGL 161 (312)
T ss_dssp HHHHHHHHEEEEEEETHHHHHHH
T ss_pred HHHHHHHcCCcEEEECHHHHHHH
Confidence 33444457899999999999955
No 98
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=29.47 E-value=53 Score=33.36 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=33.7
Q ss_pred HhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 548 ASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 548 ~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
..+..|+.+.+.++++.+ ..+.+.+||.|..+|+..|++.
T Consensus 98 ~~l~~~~~l~~~Lr~~~~-~gk~IaaICtG~~lLa~AGLL~ 137 (253)
T 3ewn_A 98 LAAASDAETLAFMADRGA-RAKYITSVCSGSLILGAAGLLK 137 (253)
T ss_dssp HHHTTCHHHHHHHHHHHT-TCSEEEEETTHHHHHHHTTCCT
T ss_pred hhhccCHHHHHHHHHHHH-cCCEEEEEChHHHHHHHcCCCC
Confidence 345578888888888875 5689999999999999999987
No 99
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=28.47 E-value=53 Score=31.94 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=33.9
Q ss_pred HhhccChhHHHHHHHHHhCCCCeeEeeechh-hhhhccCccc
Q psy2354 548 ASLLLNEGIKTQLNKFIARSDTFSFGVCNGC-QLMNLLGWFS 588 (749)
Q Consensus 548 ~siL~n~~~~~~f~~f~~r~dtf~LGICnGc-Q~L~~~~lIp 588 (749)
..+..|+.+.+.+++|++ .++.+.+||.|. .+|+..|++-
T Consensus 85 ~~l~~~~~l~~~l~~~~~-~gk~i~aiC~G~a~~La~aGlL~ 125 (208)
T 3ot1_A 85 QAFADSTALLALIDAFSQ-QGKLVAAICATPALVFAKQQKFV 125 (208)
T ss_dssp HHHHTCHHHHHHHHHHHH-TTCEEEEETTHHHHTTTTTTCST
T ss_pred HHHhhCHHHHHHHHHHHH-cCCEEEEEChhHHHHHHHCCccC
Confidence 345578889998888886 568999999998 8999999987
No 100
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=27.64 E-value=2.1e+02 Score=23.89 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=37.9
Q ss_pred EEcCCCCCChHHH---HHHhhcC-CCCccEEEEEEEEEEecCCCCC---HHHHHHHH-HhhcCccccc
Q psy2354 5 RYYSKPGIGAGEK---TKKLKAV-PKVISDIESELCYNIEISRELT---PVELDKLH-WILNSSFECR 64 (749)
Q Consensus 5 ~~~~~~als~~~~---l~~i~~~-~~~v~sv~te~~y~V~~~~~l~---~~~~~~L~-~LL~~~~~~~ 64 (749)
..+. |...+.+- .+.+... -.+|.+|++...|.++.+++ . .++.+.++ .||..|+.++
T Consensus 8 V~lK-~gVlDpqG~av~~al~~LG~~~v~~VR~gK~~~l~~~~~-~~~a~~~v~~~~~~LLaNpVie~ 73 (84)
T 1t4a_A 8 VSLK-ESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKS-DRDLDVLVKEMCEKLLANTVIED 73 (84)
T ss_dssp EEEC-TTSCCHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEECCC-SSCHHHHHHHHHHHTTCCTTTEE
T ss_pred EEEC-CCCcCcHHHHHHHHHHHcCCCChhheEEEEEEEEEecCc-hHHHHHHHHHHHHHhcCCCcceE
Confidence 4444 44444333 3444443 33799999999999976553 3 36777887 8999987664
No 101
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=26.82 E-value=54 Score=32.00 Aligned_cols=37 Identities=5% Similarity=0.101 Sum_probs=31.9
Q ss_pred ccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 551 LLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 551 L~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
..++.+.+.+++|.+ .++.+.+||.|..+|+..|++-
T Consensus 92 ~~~~~l~~~l~~~~~-~g~~iaaIC~G~~~La~aGLL~ 128 (209)
T 3er6_A 92 KIDPALFDWIRELHL-KGSKIVAIDTGIFVVAKAGLLQ 128 (209)
T ss_dssp GSCHHHHHHHHHHHH-TTCEEEEETTHHHHHHHHTCCS
T ss_pred cCCHHHHHHHHHHHh-cCCEEEEEcHHHHHHHHcCCCC
Confidence 457888888888886 4689999999999999999987
No 102
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=24.70 E-value=59 Score=31.72 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=30.5
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccC
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG 585 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~ 585 (749)
.+..|+.+.+.+++|+++ ++.+.+||.|.++|+..|
T Consensus 104 ~l~~~~~l~~~l~~~~~~-~k~iaaiC~G~~~La~ag 139 (224)
T 1u9c_A 104 DFPDNETLQYVLQQFAED-GRIIAAVCHGPSGLVNAT 139 (224)
T ss_dssp HSTTCHHHHHHHHHHHHT-TCEEEEETTGGGGGTTCB
T ss_pred HhhcCHHHHHHHHHHHHC-CCEEEEEChHHHHHHHcc
Confidence 355678899888888864 689999999999999888
No 103
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=24.47 E-value=99 Score=25.92 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=37.9
Q ss_pred EEcCCCCCChHHH---HHHhhcC-CCCccEEEEEEEEEEecCCCCCH---HHHHHHH-HhhcCccccc
Q psy2354 5 RYYSKPGIGAGEK---TKKLKAV-PKVISDIESELCYNIEISRELTP---VELDKLH-WILNSSFECR 64 (749)
Q Consensus 5 ~~~~~~als~~~~---l~~i~~~-~~~v~sv~te~~y~V~~~~~l~~---~~~~~L~-~LL~~~~~~~ 64 (749)
..+. |...+.+- .+.+... -.+|.+|++...|.++++++..+ ++.+.++ .||..|+.++
T Consensus 8 V~lK-~gvlDpqG~av~~al~~lG~~~v~~Vr~gk~~~l~~~~~~~~~a~~~v~~~~~~LLaNpVie~ 74 (83)
T 2yx5_A 8 IKLK-KGVLNPEGRTIQRALNFLGFNNVKEVQTYKMIDIIMEGENEEKVKEEVEEMCKKLLANPVIHD 74 (83)
T ss_dssp EEEC-TTCCCHHHHHHHHHHHHTTCTTCCCCCCCEEEEEEEC-CCHHHHHHHHHHHHHHTTCCTTTEE
T ss_pred EEEC-CCCcCcHHHHHHHHHHHcCCCChhhEEEEEEEEEEecCCCHHHHHHHHHHHHHHhccCCcceE
Confidence 4445 44444333 5556654 33789999999999976544333 5677777 8999987664
No 104
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=23.78 E-value=66 Score=32.10 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=30.6
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccC
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG 585 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~ 585 (749)
.+..|+.+.+.+++|+++ ++.+.+||.|..+|+..|
T Consensus 113 ~l~~~~~l~~~l~~~~~~-gk~vaaIC~G~~~La~ag 148 (243)
T 1rw7_A 113 DYPKAKDLQDIASEIYAN-GGVVAAVCHGPAIFDGLT 148 (243)
T ss_dssp HGGGCHHHHHHHHHHHHT-TCEEEEETTGGGGGTTCB
T ss_pred hcccCHHHHHHHHHHHHc-CCEEEEECCCHHHHHhcC
Confidence 355688899988888865 789999999999999888
No 105
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=23.66 E-value=53 Score=32.14 Aligned_cols=36 Identities=8% Similarity=0.167 Sum_probs=31.5
Q ss_pred cChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 552 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 552 ~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
.++.+.+.++++.+ .++.+.+||.|.++|+..|++.
T Consensus 78 ~~~~l~~~l~~~~~-~gk~iaaiC~G~~~La~aGLL~ 113 (206)
T 3f5d_A 78 DNKKLLHFVKTAFQ-KNIPIAAICGAVDFLAKNGLLN 113 (206)
T ss_dssp CCHHHHHHHHHHHH-TTCCEEEETHHHHHHHHTTTTT
T ss_pred cCHHHHHHHHHHHH-cCCEEEEECHHHHHHHHcCCCC
Confidence 67788888888876 5789999999999999999987
No 106
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=23.66 E-value=36 Score=32.37 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=31.9
Q ss_pred ccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 551 LLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 551 L~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
..++.+.+.++++++ .++.+.+||.|.++|+..|++.
T Consensus 78 ~~~~~l~~~l~~~~~-~~k~i~aiC~G~~~La~aGlL~ 114 (188)
T 2fex_A 78 GTAADLGGLVKRFRD-RDRLVAGICAAASALGGTGVLN 114 (188)
T ss_dssp TCCCCCHHHHHHHHH-TTCEEEEETHHHHHHHHTTTTT
T ss_pred cccHHHHHHHHHHHH-CCCEEEEECHHHHHHHHCCCcC
Confidence 467778888888886 4689999999999999999987
No 107
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=22.99 E-value=66 Score=31.97 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=33.1
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
.+..|+.+.+.+++++. ..+.+.+||.|..+|+..|++.
T Consensus 79 ~~~~~~~l~~~lr~~~~-~g~~v~aiC~G~~~La~aGLL~ 117 (231)
T 3noq_A 79 ALMEDPQALAFIRQQAA-RARYVTSVSTGSLVLGAAGLLQ 117 (231)
T ss_dssp HHTTCHHHHHHHHHHHT-TCSEEEEETTHHHHHHHTTTTT
T ss_pred hhccCHHHHHHHHHHHh-cCCEEEEECHHHHHHHHcCCCC
Confidence 45578888888888875 5689999999999999999987
No 108
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=22.63 E-value=69 Score=34.30 Aligned_cols=40 Identities=25% Similarity=0.447 Sum_probs=33.9
Q ss_pred HhhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 548 ASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 548 ~siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
..+..++.+.+.+++|++ ..+.+.+||.|.++|+..|++.
T Consensus 295 ~~~~~~~~~~~~l~~~~~-~~~~i~aiC~g~~~La~aGlL~ 334 (396)
T 3uk7_A 295 EYLALNEHVLNIVKEFMN-SEKPVASICHGQQILAAAGVLK 334 (396)
T ss_dssp HHHTTCHHHHHHHHHHHH-TTCCEEEEGGGHHHHHHTTTTT
T ss_pred hhhccCHHHHHHHHHHHH-CCCEEEEEchHHHHHHHcCCcC
Confidence 345578889988888886 4689999999999999999998
No 109
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=21.78 E-value=64 Score=31.55 Aligned_cols=39 Identities=13% Similarity=0.401 Sum_probs=33.2
Q ss_pred hhccChhHHHHHHHHHhCCCCeeEeeechhhhhhccCccc
Q psy2354 549 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588 (749)
Q Consensus 549 siL~n~~~~~~f~~f~~r~dtf~LGICnGcQ~L~~~~lIp 588 (749)
.+..|+.+.+.++++++ ..+.+.+||.|..+|+..|++-
T Consensus 79 ~~~~~~~~~~~l~~~~~-~~k~iaaiC~G~~~La~aGLL~ 117 (211)
T 3mgk_A 79 EKVNDDNFINFIGNMVK-ESKYIISVCTGSALLSKAGILN 117 (211)
T ss_dssp HHTTCHHHHHHHHHHHH-HCSEEEECTTHHHHHHHTTTTT
T ss_pred hhcCCHHHHHHHHHHHH-cCCEEEEEchHHHHHHhcCCcC
Confidence 45568888888888886 4689999999999999999987
No 110
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=20.18 E-value=82 Score=25.65 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.7
Q ss_pred cEEEEccCCHHHHHHHHHHcCCCeeEe
Q psy2354 429 WLLEVTNENEAFVLEQFKAANVSCKKI 455 (749)
Q Consensus 429 ~VleV~~~~~~~v~~~~~~~gv~~~~I 455 (749)
+=|-|+|.+++.|.+.++++|+++.++
T Consensus 49 vdI~V~p~~~~~f~~~L~~~~I~y~Vl 75 (78)
T 2gjf_A 49 VVILIPSDMVEWFLEMLKAKGIPFTVY 75 (78)
T ss_dssp EEEEECTTSHHHHHHHHHHHTCCEEEE
T ss_pred EEEEECHHHHHHHHHHHHHCCCcEEEE
Confidence 557899999999999999999998764
Done!