RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2354
(749 letters)
>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1307
Score = 218 bits (557), Expect = 2e-59
Identities = 90/195 (46%), Positives = 122/195 (62%), Gaps = 6/195 (3%)
Query: 230 SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVL 289
S+ V G N A+LDF+AVQRGD EM QKL RV+RAC+E+ + NPI SIHDQGAGGN NV+
Sbjct: 451 SSMVSGQNDAELDFNAVQRGDAEMSQKLYRVVRACVEMGED-NPIVSIHDQGAGGNCNVV 509
Query: 290 KEIVEPVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPV 349
KEI+ P GA + + ++GD ++S LE+WGAEYQE +ALL KP L+ I RE+C +
Sbjct: 510 KEIIYPKGAEIDIRAVVVGDHTLSVLEIWGAEYQEQDALLIKPESRDLLQSICDRERCSM 569
Query: 350 QFVGVVTGSNKIVLAEDKA--KYYSNPSSPLQHPVDIQMELICGKMPQK---MAFAGLSG 404
+G + GS ++VL + A K +N P VD+ +E + G MPQK
Sbjct: 570 AVIGTIDGSGRVVLVDSAAPEKCEANGLPPPPPAVDLDLEKVLGDMPQKTFEFKRVANKL 629
Query: 405 MTVDIPSDVTTSEVL 419
+DIP +T + L
Sbjct: 630 EPLDIPPGITVMDAL 644
Score = 199 bits (507), Expect = 4e-53
Identities = 115/313 (36%), Positives = 147/313 (46%), Gaps = 71/313 (22%)
Query: 397 MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKIG 456
MAFAG G+ VD+PS + E LFAEELG +LEV+ +N V+E+ AA V+ + IG
Sbjct: 900 MAFAGNCGINVDLPS--SGHSAFETLFAEELGLVLEVSRKNLDAVMEKLAAAGVTAEVIG 957
Query: 457 VCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRI 516
A + I V V+ L+E +L +WE TS++LEKLQ C +E L +R
Sbjct: 958 QVTASPL---IEVKVDGATCLSEKTASLRDMWEETSFQLEKLQRLESCVAQEKEGLKSRK 1014
Query: 517 GPKYQ--YQPVR--DDIVGATLGKKDAL----GS-------AKGWAA---------SLLL 552
P ++ + P I+ AT K A+ GS A +AA S LL
Sbjct: 1015 APTWKLSFTPAFTDKKIMNATSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLL 1074
Query: 553 N------------------------------------EGIKTQLNKFIARSDTFSFGVCN 576
N E + Q +F R DTFS GVCN
Sbjct: 1075 NGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCN 1134
Query: 577 GCQLMNLLGWFSVSTQDKNNLVTDVMLS-----HNNSERFECRYSTVKIMKSPAIMLRNL 631
GCQLM LLGW Q L S HN S RFECR+++V I SPAIML+ +
Sbjct: 1135 GCQLMALLGWVP-GPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIEDSPAIMLKGM 1193
Query: 632 ENSVLGVWVAHGE 644
E S LGVW AHGE
Sbjct: 1194 EGSTLGVWAAHGE 1206
Score = 191 bits (488), Expect = 9e-51
Identities = 72/110 (65%), Positives = 85/110 (77%)
Query: 640 VAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMW 699
+A L G A +IGEQPIKGLVDPK AR+AV EALTNLV+AK++ L DVK SGNWM+
Sbjct: 690 IAQTHTGLTGGACAIGEQPIKGLVDPKAMARLAVGEALTNLVWAKVTALSDVKASGNWMY 749
Query: 700 AAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLSMAARVGKETVKAP 749
AAKL GEGA ++DA A+ D M E G+A+DGGKDSLSMAA+ G E VKAP
Sbjct: 750 AAKLDGEGADMYDAAVALRDAMIELGVAIDGGKDSLSMAAQAGGEVVKAP 799
Score = 96.8 bits (241), Expect = 2e-20
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 16 EKTKKLKA-VPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKD 74
E +K++ V I IE+E C+N+ + L+ +L+ L W+L +FE L + + +
Sbjct: 2 ELLRKVQTKVSNDIVSIETEQCFNVGLESPLSAEKLETLKWLLRETFEPENLGTESFLEA 61
Query: 75 ------NSNVIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSRAI 128
N+ V+EVGPRL+F+T + +N +SIC + L VTR E S RY L S L +
Sbjct: 62 KKSEGLNAVVVEVGPRLSFTTAWSTNAVSICSACGLTEVTRLERSRRYLLFSSSPLDESQ 121
Query: 129 ITK 131
I
Sbjct: 122 INA 124
Score = 94.1 bits (234), Expect = 1e-19
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 158 GNVLKEIVEPVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISARE 217
NV+KEI+ P GA + + ++GD ++S LE+WGAEYQE +ALL KP L+ I RE
Sbjct: 506 CNVVKEIIYPKGAEIDIRAVVVGDHTLSVLEIWGAEYQEQDALLIKPESRDLLQSICDRE 565
Query: 218 KCPVQFVGVVTGSNKV 233
+C + +G + GS +V
Sbjct: 566 RCSMAVIGTIDGSGRV 581
>gnl|CDD|188163 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
single chain form. This model represents a
single-molecule form of
phosphoribosylformylglycinamidine synthase, also called
FGAM synthase, an enzyme of purine de novo biosynthesis.
This form is found mostly in eukaryotes and
Proteobacteria. In Bacillus subtilis PurL (FGAM synthase
II) and PurQ (FGAM synthase I), homologous to different
parts of this model, perform the equivalent function;
the unrelated small protein PurS is also required and
may be a third subunit [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 1310
Score = 203 bits (517), Expect = 2e-54
Identities = 81/213 (38%), Positives = 110/213 (51%), Gaps = 14/213 (6%)
Query: 220 PVQFVGVVTG--SNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESI 277
P +G+ G S+ V G N ADLDF +VQRG+PEM ++ VI C +L NPI SI
Sbjct: 443 PAMLIGLGGGAASSMVSGTNTADLDFASVQRGNPEMERRCQEVIDRCWQLGEK-NPIISI 501
Query: 278 HDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHC 335
HD GAGG N L E++ GAV+ + L DP +S LE+W E QE LL + +
Sbjct: 502 HDVGAGGLSNALPELIHDGGRGAVIDLRAVPLDDPGLSPLEIWCNESQERYVLLVRAENL 561
Query: 336 KTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSN----PSSPLQHPVDIQMELICG 391
+ I RE+CP VG TG ++ L +D + PS +PVD+ +E++ G
Sbjct: 562 EIFTAICERERCPFAVVGTATGDGRLTLVDDTPVRRNGQGDAPSHFPNNPVDLPLEVLLG 621
Query: 392 KMPQKMAFAGLS----GMTVDIPSDVTTSEVLE 420
KMP KM +DIP + E LE
Sbjct: 622 KMP-KMTRFVQRKAPMLQPLDIPPGLDLHEALE 653
Score = 168 bits (427), Expect = 4e-43
Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 4/107 (3%)
Query: 647 LRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGE 706
G A +IGE+P K L+DPK AR+AV EA+TNL A + DL DVK S NWM AA PGE
Sbjct: 705 YTGEAMAIGERPPKALLDPKASARLAVGEAITNLAAALVGDLSDVKLSANWMAAAGHPGE 764
Query: 707 GAALFDACQAMCDIMGEFGIAVDGGKDSLSMAARVG----KETVKAP 749
AAL+DA +A+ ++ GIA+ GKDSLSM R ++V AP
Sbjct: 765 DAALYDAVKAVSELCPALGIAIPVGKDSLSMKTRWQDNGETKSVTAP 811
Score = 131 bits (331), Expect = 3e-31
Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 8/108 (7%)
Query: 538 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM-NLLGWFSVSTQDKNN 596
D LG+ KGWA S+L N ++ Q F R DTFS GVCNGCQ++ NLL W T++ +
Sbjct: 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIP-GTENWPH 1172
Query: 597 LVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGE 644
V NNSERFE R ++V++ +SP+IMLR + S L V VAHGE
Sbjct: 1173 FV------RNNSERFEARVASVRVGESPSIMLRGMAGSRLPVAVAHGE 1214
Score = 100 bits (251), Expect = 1e-21
Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Query: 397 MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKIG 456
MAFAG G+ VD+ D + +LF EELG +++V + A VLE +AA ++ +G
Sbjct: 913 MAFAGHCGLDVDL--DALGDSLFAVLFNEELGAVIQVAKPDLAAVLELLRAAGLTALILG 970
Query: 457 VCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRI 516
+ G + I ++VN +L+E L IWE TS++L++L+ N CA+EE+ L R
Sbjct: 971 IGTPTG-HPMIRISVNGATLLSEKRSELRDIWEETSFQLQRLRDNPECAEEEFEGLRDRD 1029
Query: 517 GPKYQYQPVRD 527
GP + D
Sbjct: 1030 GPGLKLPLTFD 1040
Score = 84.8 bits (210), Expect = 9e-17
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 158 GNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISA 215
N L E++ GAV+ + L DP +S LE+W E QE LL + + + I
Sbjct: 510 SNALPELIHDGGRGAVIDLRAVPLDDPGLSPLEIWCNESQERYVLLVRAENLEIFTAICE 569
Query: 216 REKCPVQFVGVVTG 229
RE+CP VG TG
Sbjct: 570 RERCPFAVVGTATG 583
Score = 67.1 bits (164), Expect = 3e-11
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 22/150 (14%)
Query: 24 VPKVISDIESELCYNIEISRELTPVELDKLH--WILNSSFECRKLSSHTNFKDNSNVIEV 81
VP++ + +E CY + LT E +KL + S E + S ++EV
Sbjct: 24 VPELTG-VYAEFCYFVGWESALTADEEEKLQLLLLAGSVLEPPQ--SPLG----RGLLEV 76
Query: 82 GPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLISRGHLSRAII-----------T 130
GPRL +P+ S SI ++ L V R E RY L LS T
Sbjct: 77 GPRLGTISPWSSKATSIARNCGLAKVDRIERGRRYYLSGAHPLSEEQEAQAAALLHDRMT 136
Query: 131 KIVLA--EDKAKYYSHPSSPLQHPVDIQKG 158
+ VL + + +S P +D+ G
Sbjct: 137 ESVLPHEIEAFELFSVPEPLNLTTIDVLGG 166
>gnl|CDD|235394 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1290
Score = 153 bits (390), Expect = 2e-38
Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 235 GDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVE 294
G ++ DLDF +VQRG+PEM ++ VI C +L ++ NPI SIHD GAGG N E+V
Sbjct: 454 GQSSEDLDFASVQRGNPEMERRCQEVIDRCWQLGDD-NPILSIHDVGAGGLSNAFPELVN 512
Query: 295 P--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFV 352
G +P +S LE+W E QE L P + I RE+CP V
Sbjct: 513 DGGRGGRFDLRKIPNDEPGMSPLEIWCNESQERYVLAIAPEDLELFEAICERERCPFAVV 572
Query: 353 GVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQKM 397
G T + L + PVD+ ++++ GK P KM
Sbjct: 573 GEATEERHLTLEDSHFD---------NKPVDLPLDVLLGKPP-KM 607
Score = 146 bits (372), Expect = 3e-36
Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 648 RGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEG 707
G A ++GE+ L+D ARMAV EALTN+ A I DLK +K S NWM AA PGE
Sbjct: 686 AGEAMAMGERTPVALLDAAASARMAVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPGED 745
Query: 708 AALFDACQAM-CDIMGEFGIAVDGGKDSLSMAARV----GKETVKAP 749
A L+DA +A+ ++ GI + GKDSLSM + + V +P
Sbjct: 746 ARLYDAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEVTSP 792
Score = 139 bits (354), Expect = 6e-34
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 538 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNL 597
D LG+ +GWA S+L N ++ Q F AR DTF+ GVCNGCQ+M+ L +
Sbjct: 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPGAEHWPRF 1153
Query: 598 VTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGE 644
V N SE+FE R+S V++ +SP+I L+ + S L + VAHGE
Sbjct: 1154 V------RNRSEQFEARFSLVEVQESPSIFLQGMAGSRLPIAVAHGE 1194
Score = 94.1 bits (235), Expect = 1e-19
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 397 MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVS--CKK 454
MAFAG G+ +D+ D + L LF EELG +++V + V +S
Sbjct: 893 MAFAGHCGLDIDL--DALGDDALAALFNEELGAVIQVRAADRDAVEAILAEHGLSDCVHV 950
Query: 455 IGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSL 512
IG +A +I + N + V +E L W TSY++++L+ N CAD+E++++
Sbjct: 951 IGKPNA---GDRIVITRNGKTVFSESRTELRRWWSETSYQMQRLRDNPECADQEFDAI 1005
Score = 57.9 bits (141), Expect = 2e-08
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 159 NVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAR 216
N E+V G +P +S LE+W E QE L P + I R
Sbjct: 505 NAFPELVNDGGRGGRFDLRKIPNDEPGMSPLEIWCNESQERYVLAIAPEDLELFEAICER 564
Query: 217 EKCPVQFVGVVTG 229
E+CP VG T
Sbjct: 565 ERCPFAVVGEATE 577
Score = 57.1 bits (139), Expect = 3e-08
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 21/152 (13%)
Query: 19 KKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKDNSNV 78
+L+A ++ I +E + ++S L+ E KL +L + H +
Sbjct: 20 ARLQAAVLPVTSIYAEYVHFADLSAPLSAEEQAKLERLLTY-----GPAEHEP---AGRL 71
Query: 79 IEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKLIS------RGHLSRAI---I 129
V PR +P+ S I + L + R E Y + + R L+ + +
Sbjct: 72 FLVTPRPGTISPWSSKATDIAHNCGLAGIRRIERGIAYYVEAALSAEQRAALAALLHDRM 131
Query: 130 TKIVLA--EDKAKYYSHPS-SPLQHPVDIQKG 158
T+ V A +D +SH PL VD+ G
Sbjct: 132 TESVFADLDDAEALFSHHEPKPLTS-VDVLGG 162
>gnl|CDD|100034 cd02203, PurL_repeat1, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), first repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 313
Score = 144 bits (366), Expect = 2e-38
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 224 VGVVTGSNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAG 283
+G T S+K +N+++LD AVQ GDP M +KL I E I I D GAG
Sbjct: 166 IGGATFSSKELSENSSELDRPAVQVGDPFMEKKLQEAILEARET----GLIVGIQDLGAG 221
Query: 284 GNGNVLKEIVE--PVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMI 341
G + + E+ +GA + + L +P +S E+W +E QE L+ P + I
Sbjct: 222 GLSSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQERMLLVVPPEDLEEFLAI 281
Query: 342 SAREKCPVQFVGVVTGSNKIVL 363
+E +G VT ++ L
Sbjct: 282 CKKEDLEAAVIGEVTDDGRLRL 303
Score = 69.8 bits (172), Expect = 7e-13
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 158 GNVLKEIVE--PVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISA 215
+ + E+ +GA + + L +P +S E+W +E QE L+ P + I
Sbjct: 224 SSAVSEMAAKGGLGAEIDLDKVPLREPGMSPWEIWISESQERMLLVVPPEDLEEFLAICK 283
Query: 216 REKCPVQFVGVVTGSNKV----QGDNAADL 241
+E +G VT ++ +G+ ADL
Sbjct: 284 KEDLEAAVIGEVTDDGRLRLYYKGEVVADL 313
>gnl|CDD|222184 pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase
domain. This family captures members that are not found
in pfam00310, pfam07685 and pfam13230.
Length = 259
Score = 134 bits (341), Expect = 2e-35
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 538 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNL 597
D LGS KGWA S+L N ++ F R DTFS G+CNGCQ + LG + + +
Sbjct: 60 DVLGSGKGWAKSILFNPKLRDAFEAFFNRRDTFSLGICNGCQALIKLGL--IPGGEIDLA 117
Query: 598 VTDVMLSHNNSERFECRYSTVKI-MKSPAIMLRNLENSVLGVWVAHGE 644
L+ N+S RFE R+ VK+ KSP++ L+ +E SVL VAHGE
Sbjct: 118 EDWPTLTRNDSGRFESRWVNVKVSPKSPSVFLKGMEGSVL--PVAHGE 163
>gnl|CDD|100035 cd02204, PurL_repeat2, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), second
repeat. FGAR-AT catalyzes the ATP-dependent conversion
of formylglycinamide ribonucleotide (FGAR) and glutamine
to formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 264
Score = 123 bits (310), Expect = 3e-31
Identities = 35/96 (36%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 648 RGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEG 707
+G A S GE P L+DP GA +AVAEA+ NLV L + N+ K GE
Sbjct: 13 KGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPL-AITDCLNFGNPEKPEGEM 71
Query: 708 AALFDACQAMCDIMGEFGIAVDGGKDSLSMAARVGK 743
L +A + D G V GGKDSL
Sbjct: 72 GQLVEAVLGLGDACRALGTPVIGGKDSLYNETEGVA 107
Score = 51.8 bits (125), Expect = 5e-07
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 396 KMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKI 455
+MAFAG G VD+ D ELLF+E LG +L V E + A V I
Sbjct: 206 EMAFAGGLGAEVDLSKDDAE---DELLFSESLGRVLVEVKPENEEVFE-AEEAGVPATVI 261
Query: 456 GV 457
G
Sbjct: 262 GT 263
>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase
(GATase1)-like domain found in Formylglycinamide
ribonucleotide amidotransferase. Type 1 glutamine
amidotransferase (GATase1)-like domain found in
Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT). FGAR-AT catalyzes the ATP-dependent
conversion of formylglycinamide ribonucleotide (FGAR)
and glutamine to formylglycinamidine ribonucleotide
(FGAM), ADP, Pi, and glutamate in the fourth step of the
purine biosynthetic pathway. FGAR-AT is a glutamine
amidotransferase. Glutamine amidotransferase activity
catalyses the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. FGAR-AT
belongs to the triad family of amidotransferases having
a conserved Cys-His-Glu catalytic triad in the
glutaminase active site.
Length = 238
Score = 93.1 bits (232), Expect = 3e-21
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 538 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNL 597
D L + AAS LL E +K A G+CNG Q++ LG L
Sbjct: 57 DYLRAGAIAAASPLLMEEVK-----EFAERGGLVLGICNGFQILVELGLL------PGAL 105
Query: 598 VTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNL-ENSVLGVWVAHGE 644
+ + L R++ R+ T+++ + + + E VL + VAHGE
Sbjct: 106 IRNKGLKFI--CRWQNRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGE 151
>gnl|CDD|223124 COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
synthetase domain [Nucleotide transport and metabolism].
Length = 743
Score = 95.0 bits (237), Expect = 5e-20
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 35/233 (15%)
Query: 224 VGVVTGSNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAG 283
+G T ++ G+ + + D +VQ GDP M ++L I C++ I+ I D GAG
Sbjct: 227 IGGATFASMELGEESEEEDRPSVQVGDPFMEKRLQEAILECVQ----TGLIKGIQDLGAG 282
Query: 284 GNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMI 341
G + E+ +GA + + L +P +S E+W +E QE L+ P + I
Sbjct: 283 GLSCAISELAAKGGLGAEIDLDKVPLREPGMSPYEIWLSESQERMLLVVAPEDVEEFLEI 342
Query: 342 SAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQKMAFAG 401
+E+ P VG VT ++V+ + + VD+ ++++ GK P
Sbjct: 343 CEKERLPAAVVGEVTDEPRLVV------DWKG-----EPVVDLPIDVLAGKAP------- 384
Query: 402 LSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKK 454
D P E + E L E +L+ + NV+ K+
Sbjct: 385 ----KYDRPVKEPKKEEAGDVPEPEEPDL-------EEALLKVLSSPNVASKE 426
Score = 70.0 bits (172), Expect = 3e-12
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 648 RGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEG 707
+G A + GE P L+DP GA++AVAEAL NL K + + N + E
Sbjct: 463 KGLAMTTGENPRYALLDPYAGAKLAVAEALRNLAATGA---KPLALTDNLNFGNPEKPEV 519
Query: 708 AALFDACQAMCDIMGE----FGIAVDGGKDSLSM 737
F A + E GI V GG SL
Sbjct: 520 MGQFV---AAVAGLAEACRALGIPVVGGNVSLYN 550
Score = 48.0 bits (115), Expect = 2e-05
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 396 KMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKI 455
+MAFAG G+ +D+ + LLF+E LG ++ V E EA +E +A V K I
Sbjct: 655 EMAFAGGIGLEIDLDEL-GDDRLDALLFSESLGRVIVVVAEEEA-EVEGAEAVGVPLKVI 712
Query: 456 GVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWE 489
G+ A NE ++ + L WE
Sbjct: 713 GLVG----GDHEIGAAVNEFLVPVSVEELREAWE 742
Score = 34.5 bits (80), Expect = 0.22
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 168 VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVV 227
+GA + + L +P +S E+W +E QE L+ P + I +E+ P VG V
Sbjct: 297 LGAEIDLDKVPLREPGMSPYEIWLSESQERMLLVVAPEDVEEFLEICEKERLPAAVVGEV 356
Query: 228 TGSNKV----QGDNAADLDFDAVQRGDPEM 253
T ++ +G+ DL D + P+
Sbjct: 357 TDEPRLVVDWKGEPVVDLPIDVLAGKAPKY 386
>gnl|CDD|217219 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain.
This family includes Hydrogen expression/formation
protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase
EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The
function of the C-terminal domain of AIR synthase is
unclear, but the cleft formed between N and C domains is
postulated as a sulphate binding site.
Length = 150
Score = 70.1 bits (172), Expect = 4e-14
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 226 VVTGSNKVQGDNAA-----DLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQ 280
++ GS+ + G + D AV GDP + L V+ L +++ HD
Sbjct: 7 ILLGSSGLHGSGLSLVRKGLEDDGAVPLGDPLLEPTLIYVVLLLAAL----GLVKAAHDI 62
Query: 281 GAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTL 338
GG L E+ VGA + + + + + LE+ +E Q ++ P + +
Sbjct: 63 TGGGLAGALAEMAPASGVGAEIDLDKVPIFEELLLPLEMLFSENQGRGLVVVVPEEAEAV 122
Query: 339 RMISAREKCPVQFVGVVTGSNKIVL 363
I E P +G VT + L
Sbjct: 123 LAILEEEGLPAAVIGEVTAGGGLTL 147
Score = 37.7 bits (88), Expect = 0.006
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 397 MAFAGLSGMTVDI---PSDVTTSEVLELLFAEELGWLLEVTN-ENEAFVLEQFKAANVSC 452
MA A G +D+ P LE+LF+E G L V E VL + +
Sbjct: 74 MAPASGVGAEIDLDKVPIFEELLLPLEMLFSENQGRGLVVVVPEEAEAVLAILEEEGLPA 133
Query: 453 KKIGV 457
IG
Sbjct: 134 AVIGE 138
Score = 35.4 bits (82), Expect = 0.033
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 159 NVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAR 216
L E+ VGA + + + + + LE+ +E Q ++ P + + I
Sbjct: 69 GALAEMAPASGVGAEIDLDKVPIFEELLLPLEMLFSENQGRGLVVVVPEEAEAVLAILEE 128
Query: 217 EKCPVQFVGVVTGSNKVQG 235
E P +G VT +
Sbjct: 129 EGLPAAVIGEVTAGGGLTL 147
>gnl|CDD|223058 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 73.1 bits (180), Expect = 4e-13
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 529 IVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCN-GCQL---MNLL 584
I G++ G +D+ A+ A+LL N ++ L +F+ R DTFS G GCQ+ + +
Sbjct: 1078 IGGSS-GAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAV 1136
Query: 585 GWFSVSTQD--KNNLVTDVMLSHNNSERFECRYSTVKI-MKSPAIMLRNLENSVLGVWV 640
G + S + + L N S +E R+ I + ++ LR L SVL W
Sbjct: 1137 GSTAPSPVPGTETEEQWPITLEPNASGLYESRWLNFYIPETTKSVALRPLRGSVLPCWA 1195
Score = 60.8 bits (148), Expect = 2e-09
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 649 GAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGA 708
G +++GEQ K +DP GA+ A+ EALTNL+ A +++L+D+ + + W P + A
Sbjct: 690 GTCSALGEQGYKVQLDPILGAKYAIVEALTNLMLAPVANLEDITITLSVTWP---PTDQA 746
Query: 709 A-----LFDACQAMCDIMG 722
A AC+ C +G
Sbjct: 747 ASELYRALAACKEFCRELG 765
Score = 57.7 bits (140), Expect = 2e-08
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 397 MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKIG 456
MA AG G+T+ +P+ L+ LF+E G ++EV + + VL + ++ N+ C IG
Sbjct: 887 MALAGGRGVTITVPAGEDP---LQFLFSETPGVVIEVPPSHLSAVLTRLRSRNIICYPIG 943
Query: 457 VCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEY 509
G + SV+ N + E L +L W S E +L + Y
Sbjct: 944 TVGPSGPSNTFSVSHNGTVLFRESLSSLRSTWRSFSDEQFELLRPDLTEESMY 996
>gnl|CDD|223125 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
glutamine amidotransferase domain [Nucleotide transport
and metabolism].
Length = 231
Score = 65.7 bits (161), Expect = 6e-12
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 19/108 (17%)
Query: 538 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNL 597
D L + G A++ + ++ +F + G+CNG Q+++ G L
Sbjct: 57 DYLRA--GAIAAI---APVMDEVREFAEK-GKPVLGICNGFQILSEAG-----------L 99
Query: 598 VTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLE-NSVLGVWVAHGE 644
+ L+ N S RFECR+ +++ + E V+ + VAHGE
Sbjct: 100 LPG-ALTRNESLRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGE 146
>gnl|CDD|100029 cd02193, PurL, Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT) catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 272
Score = 61.2 bits (148), Expect = 4e-10
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 6/117 (5%)
Query: 239 ADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--V 296
L + Q DP + ++A + + + HD+GAGG L E+V
Sbjct: 158 RQLGDKSAQVRDPAQEKGFYEAMQALVA----AGKLLAWHDRGAGGLLVALAELVFAGHC 213
Query: 297 GAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVG 353
G V + +P + LE+ E QE + + + V +G
Sbjct: 214 GVQVDLAALGDDEPDMEPLEIALFESQERGVIQVRAEDRDAVEEAQYGLADCVHVLG 270
Score = 57.3 bits (138), Expect = 6e-09
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 649 GAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGA 708
G A I E +DP GA V A+ + + A D K + S NWM +A PGE A
Sbjct: 2 GEAMKIEEHNHPAAIDPAAGAATGVGGAIRD-IAATGIDAKPIALSANWMASAGHPGEDA 60
Query: 709 ALFDACQAMCDIMGEFGIAVDGGKDSLSMAAR 740
L+DA + + ++ + G+ + GKD +SM R
Sbjct: 61 ILYDAVKGVAELCNQLGLPIPVGKDRMSMKTR 92
>gnl|CDD|233554 TIGR01739, tegu_FGAM_synt, herpesvirus tegument
protein/v-FGAM-synthase. This model describes a family
of large proteins of herpesvirues. The protein is
described variably as tegument protein or
phosphoribosylformylglycinamidine synthase
(FGAM-synthase). Most of the length of the protein shows
homology to eukaryotic FGAM-synthase. Functional
characterizations were not verified during construction
of this model.
Length = 1202
Score = 63.2 bits (154), Expect = 4e-10
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 529 IVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCN-GCQLM---NLL 584
I+G G D+ A+ AA+LL N+ L F+ R DTFS G GCQL+ N++
Sbjct: 978 IIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIV 1037
Query: 585 GWFSVSTQDKNNLVTDVM--------LSHNNSERFECRYSTVKI-MKSPAIMLRNLENSV 635
G+ +++ V L N S +E R+ I + ++ LR L SV
Sbjct: 1038 GY------TQSSPFITVPTEVQEPPRLEKNASGLYESRWLNFYIPETTKSVFLRPLRGSV 1091
Query: 636 LGVWV 640
L W
Sbjct: 1092 LPCWA 1096
Score = 62.4 bits (152), Expect = 7e-10
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 620 IMKSPAIMLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTN 679
++ P L + EN V L +++GEQ K DPKRGA A+ EAL N
Sbjct: 571 LILDPDSWLYSWENEV------LENPALSCVCSALGEQTYKVQADPKRGATYAITEALLN 624
Query: 680 LVFAKISDLKDVKCSGNWMWAAKLPGEG---AALFDACQAMCDIMG 722
L + + L+DV + + W+ AL AC+ C+ +G
Sbjct: 625 LSLSPWNTLEDVIITLSVTWSPTDHVYSLLKDALR-ACKDFCEELG 669
Score = 53.2 bits (128), Expect = 5e-07
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 397 MAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKIG 456
MA +G G+ + +P ++ LE L +E G ++EV + VL+ ++ + + IG
Sbjct: 788 MALSGGKGVRITLPHG---TDPLEFLCSETPGVVIEVDPSSMYAVLQFLRSEGLVFQVIG 844
Query: 457 VCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEY 509
G + SV N+ + E L L W S E L E +
Sbjct: 845 RVGESGPSPTFSVVHNSTVLFQEPLSLLQGTWRSFSDEENTLLCPNLEPREMH 897
>gnl|CDD|233552 TIGR01736, FGAM_synth_II, phosphoribosylformylglycinamidine
synthase II. Phosphoribosylformylglycinamidine synthase
is a single, long polypeptide in most Proteobacteria and
eukarotes. Three proteins are required in Bacillus
subtilis and many other species. This is the longest of
the three and is designated PurL,
phosphoribosylformylglycinamidine synthase II, or FGAM
synthase II [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 715
Score = 57.7 bits (140), Expect = 2e-08
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 220 PVQFVGVVTGSNKVQGDNAADLDFD---------AVQRGDPEMGQKLNRVIRACIELPNN 270
+ VG TG + + G A + AVQ GDP + L I A +E +
Sbjct: 188 KLVLVGGKTGRDGIGGATFASEELSEEAEEEDRPAVQVGDPFTEKLL---IEATLEA-VD 243
Query: 271 LNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNAL 328
++ I D GA G + E+ +GA ++ + L +P ++ E+ +E QE L
Sbjct: 244 TGLVKGIKDLGAAGLTSASSEMAAKGGLGAEIYLDKVPLREPGMTPYEIMLSESQERMLL 303
Query: 329 LCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPL 378
+ P + + I + + P +G VT +I L P L
Sbjct: 304 VVAPEDVEEVLEIFEKYELPASVIGEVTDEGRIRLYYKGEVVADLPIELL 353
Score = 37.3 bits (87), Expect = 0.032
Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 16/95 (16%)
Query: 648 RGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKC--SGN-----WMWA 700
G A + P +DP GA AVAEA NL L V C GN W
Sbjct: 431 LGLALTADCNPRYVYLDPYAGAAGAVAEAYRNLAAVGAEPLAAVDCLNFGNPERPEVYW- 489
Query: 701 AKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSL 735
+A + + D G V GG SL
Sbjct: 490 --------QFVEAVKGLGDACRALGTPVVGGNVSL 516
>gnl|CDD|234913 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 261
Score = 50.1 bits (120), Expect = 1e-06
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 559 QLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTV 618
+ +FI G+CNG Q++ LG D+ ++ L+ N S RFECR + +
Sbjct: 81 DIEEFI-DEGYPIIGICNGFQVLVELGLLP--GFDEIAEKPEMALTVNESNRFECRPTYL 137
Query: 619 KIMKSPAIMLRNLENSVLGVWVAHGE 644
K I + L+ V V VAH E
Sbjct: 138 KKENRKCIFTKLLKKDVFQVPVAHAE 163
>gnl|CDD|234921 PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 724
Score = 48.9 bits (118), Expect = 9e-06
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 396 KMAFAGLSGMTVDIPSDVTTSEVLELLFAEELG-WLLEVTNENEAFVLEQFKAANVSCKK 454
+MA AG G VD+ + LLF+E G +++ V ENE +AA V +
Sbjct: 632 EMAIAGGLGAEVDLSDGLRPDA---LLFSESQGRYVVSVPPENEEAFEALAEAAGVPATR 688
Query: 455 IGVCDAFGMNAKISVAVNNEPVLNE 479
IGV + V N+ L E
Sbjct: 689 IGVVG----GDALKVKGNDTESLEE 709
Score = 34.3 bits (80), Expect = 0.26
Identities = 23/90 (25%), Positives = 29/90 (32%), Gaps = 38/90 (42%)
Query: 664 DPKRGARMAVAEALTNLVFAKISDLKDVKCSG----------NW--------MWAAKLPG 705
DP GA++AVAEA NL G N+ MW
Sbjct: 456 DPYEGAKLAVAEAARNLA-----------AVGATPLAITDCLNFGNPEKPEVMW------ 498
Query: 706 EGAALFDACQAMCDIMGEFGIAVDGGKDSL 735
+A + + D G V GG SL
Sbjct: 499 ---QFVEAVRGLADACRALGTPVVGGNVSL 525
Score = 33.2 bits (77), Expect = 0.69
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 245 AVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGG 284
AVQ GDP M + L I AC+EL + I D GA G
Sbjct: 233 AVQVGDPFMEKLL---IEACLEL-IKTGLVVGIQDMGAAG 268
>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase
I. In some species, phosphoribosylformylglycinamidine
synthase is composed of a single polypeptide chain. This
model describes the PurQ protein of Bacillus subtilis
(where PurL, PurQ, and PurS are required for
phosphoribosylformylglycinamidine synthase activity) and
functionally equivalent proteins from other bacteria and
archaea [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 227
Score = 38.9 bits (91), Expect = 0.005
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 573 GVCNGCQLMNLLGWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNL- 631
G+CNG Q++ G L+ +L N+S RF CR+ +++ + I +N
Sbjct: 83 GICNGFQILVEAG-----------LLPGALL-PNDSLRFICRWVYLRVENADTIFTKNYK 130
Query: 632 ENSVLGVWVAHGE 644
+ V+ + +AHGE
Sbjct: 131 KGEVIRIPIAHGE 143
>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine
synthase, clade II. This model represents a
single-molecule form of
phosphoribosylformylglycinamidine synthase, also called
FGAM synthase, an enzyme of purine de novo biosynthesis.
This model represents a second clade of these enzymes
found in Clostridia, Bifidobacteria and Streptococcus
species. This enzyme performs the fourth step in IMP
biosynthesis (the precursor of all purines) from PRPP
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 1239
Score = 34.8 bits (80), Expect = 0.20
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 224 VGVVTGSNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAG 283
+G TGS+K + +L VQ+G+ +K+ R+ R N I+ +D GAG
Sbjct: 452 IGGATGSSKEHTVESLELCGAEVQKGNAPEERKIQRLFRN----GNVTRLIKKCNDFGAG 507
Query: 284 G 284
G
Sbjct: 508 G 508
Score = 34.0 bits (78), Expect = 0.36
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 541 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG 585
GSAK + A++L N ++ ++ F+AR D G+CNG Q + G
Sbjct: 1049 GSAK-FIAAILRNPKVRVAIDSFLAR-DGLILGICNGFQALVKSG 1091
Score = 29.4 bits (66), Expect = 9.4
Identities = 44/155 (28%), Positives = 61/155 (39%), Gaps = 16/155 (10%)
Query: 592 QDKNNLVTDVMLSHNN--SERFECRY--STVKIMKSPAIMLRNLENSVLGVWVAHGEVML 647
+D +++D+ ++ ERF+ TV + L E SV + V GE
Sbjct: 634 EDWLKVLSDLNVASQKGLQERFDSSVGAGTVLMPLGGKYQLTPTEASVAKLPVLGGETHT 693
Query: 648 RGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMW------AA 701
A G P P GA AV E+L LV A D K + S + A
Sbjct: 694 ASAIAW-GFNPYIAEWSPYHGAAYAVIESLAKLVAAGA-DYKKARLSFQEYFEKLDKDAE 751
Query: 702 KLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLS 736
+ AAL A +A D G+ GGKDS+S
Sbjct: 752 RWGKPFAALLGAIKAQID----LGLPAIGGKDSMS 782
>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase
related protein. This family includes Hydrogen
expression/formation protein HypE, AIR synthases, FGAM
(formylglycinamidine ribonucleotide) synthase and
Selenophosphate synthetase (SelD). The N-terminal domain
of AIR synthase forms the dimer interface of the
protein, and is suggested as a putative ATP binding
domain.
Length = 222
Score = 33.9 bits (78), Expect = 0.20
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 651 ATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAAL 710
A S ++P G R+AV A+ ++ + + + + E L
Sbjct: 3 AMSTDGINPPLAINPWAGGRLAVGGAVNDIA---AMGARPIALLASLSLSN--GLEVDIL 57
Query: 711 FDACQAMCDIMGEFGIAVDGGKDSLSMA 738
D + + + G+ + GG S+S
Sbjct: 58 EDVVDGVAEACNQLGVPIVGGHTSVSPG 85
>gnl|CDD|184499 PRK14090, PRK14090, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 601
Score = 33.7 bits (77), Expect = 0.39
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 225 GVVTGSNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGG 284
G S + G+ A L ++Q GDP + L I A +E+ +E D GAGG
Sbjct: 187 GASFASEDLTGEKATKL---SIQVGDPFAEKML---IEAFLEMVEE-GLVEGAQDLGAGG 239
Query: 285 NGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKP 332
+ E+V +GA+V + L +P + E+ +E QE A++ P
Sbjct: 240 VLSATSELVAKGGLGAIVHLDRVPLREPDMEPWEILISESQERMAVVTSP 289
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 31.2 bits (71), Expect = 2.7
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 521 QYQPVRDDIVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQL 580
+Q V+ ++ + A N G K + N I + G +L
Sbjct: 170 LFQFVQILVISNGTDARYG---ANTTDEGRNSNFGWKDEKNNPIKDLEDLIKGFLAPERL 226
Query: 581 MNLLGWFSVSTQDKNNLVT 599
++++ F V + + LV
Sbjct: 227 LDIIRNFIVFDKSDDGLVK 245
>gnl|CDD|181996 PRK09619, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 218
Score = 29.4 bits (66), Expect = 5.7
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 618 VKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKGLVDPKRGA 669
K+MKS +++ N++ V +VM+ ++GE P+ G + K A
Sbjct: 72 AKLMKSNTVLMDNMQTLATANLVGQ-QVMVESHEITLGEDPVAGRLTLKHPA 122
>gnl|CDD|165022 PHA02639, PHA02639, EEV host range protein; Provisional.
Length = 295
Score = 29.6 bits (66), Expect = 6.3
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 401 GLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVT-NENEAFVLEQFK 446
G+ + D P D++ + EL+ E+G L+E T N + A + ++F+
Sbjct: 16 GVKSIYCDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFR 62
>gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2. This model
discriminates eubacterial (and mitochondrial)
translation initiation factor 2 (IF-2), encoded by the
infB gene in bacteria, from similar proteins in the
Archaea and Eukaryotes. In the bacteria and in
organelles, the initiator tRNA is charged with
N-formyl-Met instead of Met. This translation factor
acts in delivering the initator tRNA to the ribosome. It
is one of a number of GTP-binding translation factors
recognized by the pfam model GTP_EFTU [Protein
synthesis, Translation factors].
Length = 587
Score = 29.7 bits (67), Expect = 6.6
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 377 PLQHPVDIQMELICGKMPQKMAFAG--------LSGMTVDIPSDVTTSEVLELLFAEELG 428
+ I L ++ KM L G+ V I + V E EL+ AEE G
Sbjct: 1 VKPSVIVIGGTLTVSELANKMNIKVSDIIKKLMLLGVMVTI-NQVLDKETAELV-AEEFG 58
Query: 429 WLLEVTNENEAFVLE 443
+EV E E
Sbjct: 59 VKVEVRVTLEETEAE 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0862 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,300,130
Number of extensions: 3647596
Number of successful extensions: 2531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2474
Number of HSP's successfully gapped: 59
Length of query: 749
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 645
Effective length of database: 6,324,786
Effective search space: 4079486970
Effective search space used: 4079486970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.8 bits)