RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2354
(749 letters)
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
glutaminase, thioester intermediate, ligas; HET: ADP;
1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
3umm_A*
Length = 1303
Score = 149 bits (377), Expect = 3e-37
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 224 VGVVTGSNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAG 283
+G S+ G + ADLDF +VQR +PEM ++ VI C +L + NPI IHD GAG
Sbjct: 456 LGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDA-NPILFIHDVGAG 514
Query: 284 GNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMI 341
G N + E+V G L +P +S LE+W E QE L +
Sbjct: 515 GLSNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL 574
Query: 342 SAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQK 396
RE+ P +G T + L ++ P+D+ ++++ GK P+
Sbjct: 575 CKRERAPYAVIGDATEEQHLSLHDNHFD---------NQPIDLPLDVLLGKTPKM 620
Score = 147 bits (373), Expect = 1e-36
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 538 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQDKNNL 597
D LG+ +GWA S+L N ++ + F R T + GVCNGCQ+M+ L ++
Sbjct: 1106 DVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRF 1165
Query: 598 VTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGE 644
V N+S+RFE R+S V++ +SP+++L+ + S + + V+HGE
Sbjct: 1166 V------RNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGE 1206
Score = 128 bits (323), Expect = 1e-30
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 627 MLRNLENSVLGVWV-AHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKI 685
M+ + V V G A SIGE+ L+D AR+AV EALTN+ +I
Sbjct: 677 MVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQI 736
Query: 686 SDLKDVKCSGNWMWAAKLPGEGAALFDACQAMC-DIMGEFGIAVDGGKDSLSMAARVGKE 744
D+K +K S NWM AA PGE A L+DA +A+ ++ + G+ + GKDS+SM R +
Sbjct: 737 GDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEG 796
Score = 88.9 bits (220), Expect = 3e-18
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 396 KMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKI 455
+MAFAG G+ VDI + L LF EELG +++V E+ V ++ +
Sbjct: 904 EMAFAGHCGVQVDI--AALGDDHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLADC-V 960
Query: 456 GVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTR 515
+ + N++ V +E TL + W T++++++L+ N +CAD+E+ +
Sbjct: 961 HYLGQALAGDRFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKAND 1020
Query: 516 IGPKYQYQPVRD 527
P + D
Sbjct: 1021 TDPGLNVKLSFD 1032
Score = 78.5 bits (193), Expect = 5e-15
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 19 KKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKDNSNV 78
+ +A + +I +E + +++ L E +L +L + ++ +
Sbjct: 29 ARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYG------PALSSHTPAGKL 82
Query: 79 IEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKL 118
+ V PR +P+ S I + L V R E Y +
Sbjct: 83 LLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYI 122
Score = 72.0 bits (176), Expect = 5e-13
Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 8/126 (6%)
Query: 158 GNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISA 215
N + E+V G L +P +S LE+W E QE L +
Sbjct: 517 SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDELCK 576
Query: 216 REKCPVQFVGVVTGSNKV------QGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPN 269
RE+ P +G T + + DL D + P+M + + + L
Sbjct: 577 RERAPYAVIGDATEEQHLSLHDNHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGDALNR 636
Query: 270 NLNPIE 275
I
Sbjct: 637 ADITIA 642
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 2e-11
Identities = 111/694 (15%), Positives = 197/694 (28%), Gaps = 292/694 (42%)
Query: 112 VSTRYKLISRGHLSRAIITKIVLAEDKAKYYSHPSSPLQHPVDIQKGNVLKE-----IVE 166
STR +S G L ++ P++ + L+E + E
Sbjct: 4 YSTRPLTLSHGSLEHVLLV--------------PTASFFI------ASQLQEQFNKILPE 43
Query: 167 PVGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAR--EKCPVQFV 224
P TE F D + EL ++ L +S+ QF
Sbjct: 44 P------TEGFAADDEPTTPAELV-GKF---------------LGYVSSLVEPSKVGQFD 81
Query: 225 GVVTG------SNKVQGDN----AADLDFDAVQRGDPEMGQKLNRVIR----ACIELPNN 270
V+ + ++G++ AA L + + K +I+ A I
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQE-----NDTTLVKTKELIKNYITARIMAKRP 136
Query: 271 LNP------IESIHDQGA------GGNGNV---LKEIVE-------PVGAVVFTESFLLG 308
+ ++ + A GG GN +E+ + VG ++ + L
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 309 DPSISTLELWGAEYQENNALLCKPLHCKTLRMIS---AREKCPVQFVGVVTGSNKIVLAE 365
+ +TL+ + + + L ++ P +K L
Sbjct: 197 ELIRTTLD-------------AEKVFTQGLNILEWLENPSNTP----------DKDYLL- 232
Query: 366 DKAKYYSNPSS-PLQHPVDI---QM---ELIC---GKMPQKMA--FAGLSGMTVDIPSDV 413
S P S PL I Q+ + G P ++ G +G + + + V
Sbjct: 233 ------SIPISCPL-----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 414 TTS-------------EVLELLF----------------------AEELG-----WLLEV 433
+ + + +LF + E +L +
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 434 TNENEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAVNNEP---VLN---EDLGTLFLI 487
+N + V + N ++ +++ N V++ + L L L
Sbjct: 342 SNLTQEQVQDYVNKTNSH---------LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL- 391
Query: 488 WERTSYELEKLQMNARCADEEYNSLVTRI-----GPKYQYQ--PVRDDIVGATLGKKDAL 540
L K A + +RI K+ + PV
Sbjct: 392 ------TLRKA-----KAPSGLDQ--SRIPFSERKLKFSNRFLPV--------------- 423
Query: 541 GSAKGWAA---SLLL---NEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSV-STQD 593
A+ S LL ++ I L K + SF N + V T D
Sbjct: 424 ------ASPFHSHLLVPASDLINKDLVK-----NNVSF---NAKDIQ-----IPVYDTFD 464
Query: 594 KNNLVTDVMLSHNNSER-FECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGAAT 652
++L LS + SER +C I++ P W E + AT
Sbjct: 465 GSDLRV---LSGSISERIVDC------IIRLPV------------KW----ETTTQFKAT 499
Query: 653 SI------GEQPIKGLVDPK---RGARMAVAEAL 677
I G + L G R+ VA L
Sbjct: 500 HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 51.6 bits (123), Expect = 9e-07
Identities = 47/313 (15%), Positives = 82/313 (26%), Gaps = 137/313 (43%)
Query: 238 AADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIE-SIHDQGAGGNG---------- 286
A D+ ++ R D I + N NP+ +IH G G
Sbjct: 1642 AQDV-WN---RADNHFKDTYGFSILDIVI---N-NPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 287 -----------NVLKEIVEPVGAVVF---------TES-----FLLGDPSISTLELW--- 318
+ KEI E + F T+ L+ + E
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM---EKAAFEDLKSK 1750
Query: 319 --------------GAEYQENNALLCK----PLHCKTLRMISAREKCPVQFVGVVTGSNK 360
G EY AL + + ++ R G
Sbjct: 1751 GLIPADATFAGHSLG-EY---AALASLADVMSIE-SLVEVVFYR------------G--- 1790
Query: 361 IVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQKMAFAGLSGMTVDIPSDVTTSEVLE 420
+ P + + + P ++A A S + V+E
Sbjct: 1791 ------MTMQVAVP----RDELGRSNYGMIAINPGRVA-ASFSQEALQ--------YVVE 1831
Query: 421 LLFAEELGWLLEVTNEN---------------EAF--VLEQFKAANVSCKKIGVCDAFGM 463
+ + GWL+E+ N N + VL K +KI +
Sbjct: 1832 RV-GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL-----QKIDI------ 1879
Query: 464 NAKISVAVNNEPV 476
++ +++ E V
Sbjct: 1880 -IELQKSLSLEEV 1891
Score = 36.2 bits (83), Expect = 0.055
Identities = 49/284 (17%), Positives = 75/284 (26%), Gaps = 131/284 (46%)
Query: 20 KLKAVPKVISDIESELCYN--IEISRELT-----------PVELDKLHWIL--------- 57
+ V ++ S L +EIS L P L L+ L
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 58 NSS---FECRKLSSHTNFKDNSNVIEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVST 114
+ S F RKL F L ++PF S+
Sbjct: 403 DQSRIPFSERKLKFSNRF------------LPVASPFHSH-------------------- 430
Query: 115 RYKLISRGHLSRAIITKIVLAEDKAKYYSHPSSPLQHPV-------DIQK--GNVLKEIV 165
L A + ++ + S + +Q PV D++ G++ + IV
Sbjct: 431 --------LLVPA--SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 166 EPVGAVVFTESFLLGDPSISTLEL-WGAEYQENNALLCKPLHCKTLRMISAREKCPVQF- 223
+ I L + W K H + F
Sbjct: 481 D----------------CIIRLPVKWET------TTQFKATHI-------------LDFG 505
Query: 224 ------VGVVTGSNKVQGD-----NAADLDFDAVQRGDPEMGQK 256
+GV+T NK G A LD D + G K
Sbjct: 506 PGGASGLGVLTHRNK-DGTGVRVIVAGTLD----INPDDDYGFK 544
Score = 30.8 bits (69), Expect = 2.1
Identities = 47/326 (14%), Positives = 89/326 (27%), Gaps = 111/326 (34%)
Query: 404 GMTVDI--PSDVTTSEVLE---LLFAEELGW-LLEVTNENEAFVLEQFKAANVSCKKIGV 457
GM +D+ S +V F + G+ +L++ N + F K+I
Sbjct: 1630 GMGMDLYKTSKAA-QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK--GKRIRE 1686
Query: 458 C-DAFGMNAKISVAVNNEPVLNE-DLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTR 515
A + + E + E + + + L T
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA----------------T- 1729
Query: 516 IGPKYQY-QPVRDDIVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIA--------- 565
Q+ QP A + A A L ++G+ + A
Sbjct: 1730 -----QFTQP-------ALT----LMEKA---AFEDLKSKGLI-PADATFAGHSLGEYAA 1769
Query: 566 ---RSDTFSFGVCNGCQLMNLL---GWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVK 619
+D S L+ ++ G M R E S
Sbjct: 1770 LASLADVMSIE-----SLVEVVFYRG----------------MTMQVAVPRDELGRSNYG 1808
Query: 620 IMK-SPAIMLRNLENSVLGVWVA-----HGEVMLRGAATSI------GEQPIKGLVDPKR 667
++ +P + + L V G ++ I +Q +
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLV------EIVNYNVENQQYVAA------ 1856
Query: 668 GARMAVAEALTN-LVFAKISDLKDVK 692
G A+ + +TN L F K+ + ++
Sbjct: 1857 GDLRAL-DTVTNVLNFIKLQKIDIIE 1881
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 2e-10
Identities = 98/665 (14%), Positives = 200/665 (30%), Gaps = 196/665 (29%)
Query: 69 HTNFK------DNSNVIEVGPRLNFSTPF-----CSNVLSICQSIQLHSVTRFEVSTRYK 117
H +F+ +++ V F F C +V + +SI +++ E+
Sbjct: 6 HMDFETGEHQYQYKDILSV-----FEDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIM 56
Query: 118 LISRGHLSRAIITKIVLAEDKAKYYSHPSSPLQHPVDIQKGNVLKEIVEPVGAVVFTESF 177
+ + +L++ + L+ + E +P T +
Sbjct: 57 SKDAVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM---TRMY 112
Query: 178 LLGDPSISTLE-LWGAEYQENNALLCKPLHCKTLRMISAREKC-----PVQFVGV--VTG 229
I + L+ N+ + + L+ + P + V + V G
Sbjct: 113 ------IEQRDRLY------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 230 SNK--VQGDNAADLDFDAV-----------QRGDP----EMGQKLNRVIRA--CIELPNN 270
S K V D P EM QKL I ++
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 271 LNPIESIHDQGAGGNGNVLKEIVEPVGAVVFTESFL-LGDPSISTLELWGAEYQENNALL 329
N IH L+ +++ + + L L + + + W NA
Sbjct: 221 SNIKLRIHSIQ-----AELRRLLK---SKPYENCLLVLLN--VQNAKAW-------NAFN 263
Query: 330 CKPLHCKTLRMISAREKCPVQFVGVVTGSNKIV------LAEDK-----AKYYSNPSSPL 378
L CK L ++ R K F+ T ++ + L D+ KY L
Sbjct: 264 ---LSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 379 QHPVDIQMELICGKMPQKMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLE--VTNE 436
P + P++++ S I + T + + + ++L ++E +
Sbjct: 319 --P-----REVLTTNPRRLSIIAES-----IRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 437 NEAFVLEQFKAANVSCKKIGVCDAFGMNAKISVAV-----------NNEPVLNEDLGTLF 485
A + F ++ V F +A I + + V+N+ L
Sbjct: 367 EPAEYRKMFD-------RLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHKYS 415
Query: 486 LI---WERTSYELEKLQMNARC-ADEEY---NSLVTRIGPKYQYQ-----PVRDD----- 528
L+ + ++ + + + + + EY S+V + P D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 529 -----IVGATLGKKDAL------------------GSAKGWAASLLLNEGIKTQLN---K 562
+ ++ L +A + S+L QL
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL---NTLQQLKFYKP 532
Query: 563 FIARSD-TFSFGVCNGCQLMNLLGWFSVSTQDKNNLV----TDVM---LSHNNSERFECR 614
+I +D + +L+N + F ++ NL+ TD++ L + FE
Sbjct: 533 YICDNDPKYE-------RLVNAILDFLPKIEE--NLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 615 YSTVK 619
+ V+
Sbjct: 584 HKQVQ 588
Score = 31.7 bits (71), Expect = 1.2
Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 51/174 (29%)
Query: 14 AGEKTKKL-----KAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFEC----- 63
+ + L P+ +S I + + V DKL I+ SS
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 64 -RKL-SSHTNFKDNSNV-IEVGPRL--NFSTPFCSNVLSICQS------------IQLHS 106
RK+ + F ++++ + + + V++ I + S
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 107 V---TRFEVSTRYKLISRGHLSRAIITK------------IVLAEDKAKY-YSH 144
+ + ++ Y L H R+I+ I D +Y YSH
Sbjct: 431 IYLELKVKLENEYAL----H--RSIVDHYNIPKTFDSDDLIPPYLD--QYFYSH 476
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
genomics, JCSG, PSI, protein structure initiative; 2.15A
{Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
2hry_A*
Length = 615
Score = 55.4 bits (134), Expect = 4e-08
Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 13/177 (7%)
Query: 220 PVQFVGVVTGSNKVQGDNAADLDFD-------AVQRGDPEMGQKLNRVIRACIELPNNLN 272
+ G TG + + G + A D ++Q GDP + L I A +E+
Sbjct: 186 VIVIFGGATGRDGIHGASFASEDLTGDKATKLSIQVGDPFAEKML---IEAFLEM-VEEG 241
Query: 273 PIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSISTLELWGAEYQENNALLC 330
+E D GAGG + E+V +GA+V + L +P + E+ +E QE A++
Sbjct: 242 LVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDMEPWEILISESQERMAVVT 301
Query: 331 KPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQME 387
P + I+ + V V + P L + + +
Sbjct: 302 SPQKASRILEIARKHLLFGDVVAEVIEEPVYRVMYRNDLVMEVPVQLLANAPEEDIV 358
Score = 46.9 bits (112), Expect = 2e-05
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 648 RGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEG 707
G + + L D G +AV E++ + L C N+ P
Sbjct: 410 GGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLAITNCV-NYGDPDVDPVG- 467
Query: 708 AALFDACQAMCDIMGEFGIAVDGGKDSL 735
L A+ + G+ V G SL
Sbjct: 468 --LSAMMTALKNACEFSGVPVASGNASL 493
Score = 30.8 bits (70), Expect = 1.9
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 168 VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVV 227
+GA+V + L +P + E+ +E QE A++ P + I+ + V V
Sbjct: 267 LGAIVHLDRVPLREPDMEPWEILISESQERMAVVTSPQKASRILEIARKHLLFGDVVAEV 326
Query: 228 TGSNKV----QGDNAADLDFDAVQRGDPE 252
+ D ++ + E
Sbjct: 327 IEEPVYRVMYRNDLVMEVPVQLLANAPEE 355
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism,
ATP-binding, ligase, nucleotide-binding, biosynthesis;
HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Length = 725
Score = 53.1 bits (128), Expect = 3e-07
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 396 KMAFAGLSGMTVDIPSDVTTSEVLELLFAEELG-WLLEVTNENEAFVLEQFKAANVSCKK 454
+M F G TV++ + LE LF E L V + + +
Sbjct: 632 EMTFPYGVGATVEVREEG-----LEALFGEAPSRVLFTVEKTRLQEATLLLEERGLPYRV 686
Query: 455 IGVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYEL 495
+G ++V VL L L W+ E+
Sbjct: 687 LGETG----GKSLTVLTPGG-VLEWSLEELLSAWKAPLREV 722
Score = 52.7 bits (127), Expect = 4e-07
Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 14/154 (9%)
Query: 220 PVQFVGVVTGSNKVQGDNAADLDFD--------AVQRGDPEMGQKLNRVIRACIELPNNL 271
P+ + G TG + + G A + AVQ GDP +G+ L + A +E L
Sbjct: 196 PIYYAGAKTGRDGIGGAAFASRELKEEKAEDRPAVQVGDPFLGKLL---MEATLEA-IEL 251
Query: 272 NPIESIHDQGAGGNGNVLKEIVE--PVGAVVFTESFLLGDPSISTLELWGAEYQENNALL 329
+ +E + D GA G + L E+ +G + + + ++ EL +E QE L+
Sbjct: 252 DLVEGVQDMGAAGLTSSLSELAHKSGLGVELHLDLVPTREEGMTPEELLLSESQERMVLV 311
Query: 330 CKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVL 363
K K L + R V +
Sbjct: 312 PKEGKEKALEEVFGRWGLDCVPVARTIPERVFRV 345
Score = 45.7 bits (109), Expect = 5e-05
Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 41/152 (26%)
Query: 602 MLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGEVMLRGAATSIGEQPIKG 661
+L+ N E Y L + +W+ G A + + P
Sbjct: 398 LLASPNLASREAVYERYDHQVGTRTALLPGKGDAAVLWIKGTR---LGVAAKVDQNPRYS 454
Query: 662 LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSG----------NW--------MWAAKL 703
+ P+ GA A+AEA N+ G N
Sbjct: 455 RLHPRLGAMHALAEACRNVS-----------VVGAKPLAYTDGLNLGSPETPEGYH---- 499
Query: 704 PGEGAALFDACQAMCDIMGEFGIAVDGGKDSL 735
L + + + G+ V G SL
Sbjct: 500 -----ELAETIAGLKEASEALGVPVVSGNVSL 526
Score = 32.6 bits (75), Expect = 0.58
Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 250 DPEMGQKLNRVIRACIELPNNLNPIESIHDQGAGGNGNVLKEIVEP--VGAVVFTESFLL 307
D + + IR I+ L + HD GG L E+ P VGA V
Sbjct: 595 DLGREKAVQEAIRDLIQ--RGL--TRTAHDVAEGGLLLALAEMTFPYGVGATV------- 643
Query: 308 GDPSISTLELWGAEYQENNALLCKPLHCKTLRMISAREKCPVQFVGVVTGSNKIVLAEDK 367
+ LE E + + ++ P + +G G + VL
Sbjct: 644 -EVREEGLEALFGEAPSRVLFTVEKTRLQEATLLLEERGLPYRVLGETGGKSLTVLTPGG 702
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure,
ATP-binding, cytoplasm, ligase, nucleotide-binding,
purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga
maritima}
Length = 213
Score = 34.4 bits (80), Expect = 0.071
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 572 FGVCNGCQLM---NLL-GWFSVSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIM 627
G+CNG Q++ LL G L N+S +F C++ + + +
Sbjct: 83 MGICNGFQILIEMGLLKG----------------ALLQNSSGKFICKWVDLIVENNDTPF 126
Query: 628 LRNLE-NSVLGVWVAHGE 644
E + + +AHG
Sbjct: 127 TNAFEKGEKIRIPIAHGF 144
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus}
Length = 191
Score = 28.0 bits (62), Expect = 8.1
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 541 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 581
G L GI+ ++ K + FG C G +
Sbjct: 47 GGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWL 87
>1lm7_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin
repeat, structural protein; 3.00A {Homo sapiens} SCOP:
d.211.2.1
Length = 248
Score = 28.4 bits (63), Expect = 8.5
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 639 WVAHGEVMLRGAATSIGEQPIKGLVDPKRGARMAVAEAL 677
+++ EV R G I G+ + ++ + EA+
Sbjct: 32 QISYDEVGERIKDFLQGSSCIAGIYNETTKQKLGIYEAM 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,191,406
Number of extensions: 683417
Number of successful extensions: 1186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 28
Length of query: 749
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 648
Effective length of database: 3,881,772
Effective search space: 2515388256
Effective search space used: 2515388256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.7 bits)