RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2354
(749 letters)
>d1t3ta6 d.139.1.1 (A:430-616) FGAM synthase PurL, PurM-like module,
C1 and C2 domains {Salmonella typhimurium [TaxId:
90371]}
Length = 187
Score = 111 bits (279), Expect = 8e-29
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 224 VGVVTGSNKVQGDNAADLDFDAVQRGDPEMGQKLNRVIRACIELPNNLNPIESIHDQGAG 283
+G S+ G + ADLDF +VQR +PEM ++ VI C +L + NPI IHD GAG
Sbjct: 19 LGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQL-GDANPILFIHDVGAG 77
Query: 284 GNGNVLKEIVEP--VGAVVFTESFLLGDPSISTLELWGAEYQENNALLCKPLHCKTLRMI 341
G N + E+V G L +P +S LE+W E QE L +
Sbjct: 78 GLSNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL 137
Query: 342 SAREKCPVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQMELICGKMPQ 395
RE+ P +G T + L ++ P+D+ ++++ GK P+
Sbjct: 138 CKRERAPYAVIGDATEEQHLSLHDNHFD---------NQPIDLPLDVLLGKTPK 182
>d1t3ta5 d.79.4.1 (A:617-816) FGAM synthase PurL, PurM-like module,
N1 and N2 domains {Salmonella typhimurium [TaxId:
90371]}
Length = 200
Score = 79.8 bits (196), Expect = 1e-17
Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 651 ATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAAL 710
A SIGE+ L+D AR+AV EALTN+ +I D+K +K S NWM AA PGE A L
Sbjct: 78 AMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGL 137
Query: 711 FDACQAMC-DIMGEFGIAVDGGKDSLSMAARVG----KETVKAP 749
+DA +A+ ++ + G+ + GKDS+SM R + + +P
Sbjct: 138 YDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSP 181
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like
module, C1 and C2 domains {Salmonella typhimurium
[TaxId: 90371]}
Length = 217
Score = 69.8 bits (170), Expect = 4e-14
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 396 KMAFAGLSGMTVDIPSDVTTSEVLELLFAEELGWLLEVTNENEAFVLEQFKAANVSCKKI 455
+MAFAG G+ VDI + + L LF EELG +++V E+ V ++ +
Sbjct: 80 EMAFAGHCGVQVDIAA--LGDDHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLADC-V 136
Query: 456 GVCDAFGMNAKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTR 515
+ + N++ V +E TL + W T++++++L+ N +CAD+E+ +
Sbjct: 137 HYLGQALAGDRFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKAND 196
Query: 516 IGPKYQYQ 523
P +
Sbjct: 197 TDPGLNVK 204
>d1t3ta3 d.284.1.2 (A:1-152) FGAM synthase PurL, PurS-like domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 152
Score = 67.0 bits (163), Expect = 1e-13
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 19 KKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKDNSNV 78
+ +A + +I +E + +++ L E +L +L ++ +
Sbjct: 21 ARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYGPAL------SSHTPAGKL 74
Query: 79 IEVGPRLNFSTPFCSNVLSICQSIQLHSVTRFEVSTRYKL 118
+ V PR +P+ S I + L V R E Y +
Sbjct: 75 LLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYI 114
>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL,
amidotransferase domain {Salmonella typhimurium [TaxId:
90371]}
Length = 262
Score = 67.9 bits (165), Expect = 3e-13
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 529 IVGATLGKKDALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 588
+ D LG+ +GWA S+L N ++ + F R T + GVCNGCQ+M+ L
Sbjct: 56 VACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELI 115
Query: 589 VSTQDKNNLVTDVMLSHNNSERFECRYSTVKIMKSPAIMLRNLENSVLGVWVAHGE 644
++ N+S+RFE R+S V++ +SP+++L+ + S + + V+HGE
Sbjct: 116 PGSELWP------RFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGE 165
>d1vk3a2 d.79.4.1 (A:346-507) Phosphoribosylformylglycinamidine
synthase II, domains 1 and 3 {Thermotoga maritima
[TaxId: 2336]}
Length = 162
Score = 36.5 bits (84), Expect = 0.003
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 633 NSVLGVWVAHGEVMLRG---AATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLK 689
++V+ + ++ + + L D G +AV E++ + +
Sbjct: 35 DTVVPPGFGAAVMRIKRDGGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGA---E 91
Query: 690 DVKCSGNWMWAAKLPGEGAALFDACQAMCDIMGEFGIAVDGGKDSLS 736
+ + + L A+ + G+ V G SL
Sbjct: 92 PLAITNCVNYGDPDVDPVG-LSAMMTALKNACEFSGVPVASGNASLY 137
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 28.4 bits (63), Expect = 2.1
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 658 PIKGLVDPKRGARMAVAEAL 677
PI + D + ++++ E +
Sbjct: 3 PIAAIFDTENLEKISITEGI 22
>d1lm7a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 240
Score = 27.6 bits (61), Expect = 5.6
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 654 IGEQPIKGLVDPKRGARMAVAEAL 677
G I G+ + ++ + EA+
Sbjct: 47 QGSSCIAGIYNETTKQKLGIYEAM 70
>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 136
Score = 26.2 bits (57), Expect = 7.7
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 348 PVQFVGVVTGSNKIVLAEDKAKYYSNPSSPLQHPVDIQ 385
Q VGV+ K + YS SS L D +
Sbjct: 54 EGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAK 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,692,835
Number of extensions: 125697
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 9
Length of query: 749
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 657
Effective length of database: 1,144,436
Effective search space: 751894452
Effective search space used: 751894452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)