BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2355
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IHI|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase
pdb|3IHI|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase
pdb|4E5O|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|E Chain E, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|F Chain F, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4EB4|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
Length = 307
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 163/231 (70%), Positives = 192/231 (83%), Gaps = 1/231 (0%)
Query: 59 QGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPL 118
Q D + + + E QYL ++ I++ G KK DRTG GTLS+FG Q R+ L + FPL
Sbjct: 9 QSDAQQLSAEAPRHGELQYLRQVEHILRCGFKKEDRTGTGTLSVFGMQARYSLRD-EFPL 67
Query: 119 LTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGP 178
LTTKRVFWKGV+EELLWFIKGSTNAKELS KGV+IWD N +R++LDS+G R+EGDLGP
Sbjct: 68 LTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGP 127
Query: 179 VYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALP 238
VYGFQWRH+GAEYKDM +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALP
Sbjct: 128 VYGFQWRHFGAEYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALP 187
Query: 239 PCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
PCH L QFYV +G+LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGLQ
Sbjct: 188 PCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQ 238
>pdb|1RTS|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|1RTS|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|C Chain C, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|D Chain D, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
Length = 307
Score = 353 bits (907), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 161/219 (73%), Positives = 188/219 (85%), Gaps = 1/219 (0%)
Query: 71 QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVV 130
Q E QYL ++ I++ G KK DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+
Sbjct: 21 QHGELQYLRQVEHIMRCGFKKEDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVL 79
Query: 131 EELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAE 190
EELLWFIKGSTNAKELS KGV+IWD N +R++LDS+G R+EGDLGPVYGFQWRH+GA+
Sbjct: 80 EELLWFIKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGAD 139
Query: 191 YKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVAD 250
YKDM +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV +
Sbjct: 140 YKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVN 199
Query: 251 GKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
G+LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGLQ
Sbjct: 200 GELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQ 238
>pdb|1HZW|A Chain A, Crystal Structure Of Human Thymidylate Synthase
pdb|1HZW|B Chain B, Crystal Structure Of Human Thymidylate Synthase
pdb|1I00|A Chain A, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
pdb|1I00|B Chain B, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
Length = 290
Score = 348 bits (892), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 159/220 (72%), Positives = 186/220 (84%), Gaps = 1/220 (0%)
Query: 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGV 129
V E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV
Sbjct: 3 VAGSELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGV 61
Query: 130 VEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGA 189
+EELLWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GA
Sbjct: 62 LEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGA 121
Query: 190 EYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVA 249
EY+DM +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV
Sbjct: 122 EYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVV 181
Query: 250 DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
+ +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 182 NSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 221
>pdb|2RD8|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|C Chain C, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|D Chain D, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|E Chain E, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|F Chain F, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|3H9K|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3OB7|A Chain A, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|B Chain B, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|C Chain C, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|D Chain D, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|E Chain E, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
Length = 313
Score = 347 bits (891), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3EF9|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GH0|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 347 bits (890), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3EDW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 347 bits (890), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|4GYH|A Chain A, Structure Of Human Thymidylate Synthase At High Salt
Conditions
pdb|4H1I|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|B Chain B, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|C Chain C, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|D Chain D, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
Length = 318
Score = 347 bits (890), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|1JU6|A Chain A, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|B Chain B, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|C Chain C, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|D Chain D, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|A Chain A, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|B Chain B, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|C Chain C, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|D Chain D, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
Length = 313
Score = 347 bits (889), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRCGVEKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3GG5|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 347 bits (889), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3EAW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 347 bits (889), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALXQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|1HVY|A Chain A, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|B Chain B, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|C Chain C, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|D Chain D, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
Length = 288
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 5 ELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 63
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 64 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 123
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +L
Sbjct: 124 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSEL 183
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 184 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 219
>pdb|3ED7|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 295
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 12 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 70
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 71 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 130
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +L
Sbjct: 131 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSEL 190
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 191 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 226
>pdb|2RD8|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
Length = 313
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 157/216 (72%), Positives = 184/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPP H L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPXHALCQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3N5E|B Chain B, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 157/216 (72%), Positives = 184/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 42 ELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 100
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 101 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 160
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPP H L QFYV + +L
Sbjct: 161 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPXHALCQFYVVNSEL 220
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 221 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 256
>pdb|3GH2|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 157/216 (72%), Positives = 184/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIM AWNP D+P MALPPCH L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPCHALCQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Suggests Advantages Of
Chemotherapy With Noncompetitive Inhibitors
Length = 355
Score = 342 bits (878), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 157/216 (72%), Positives = 184/216 (85%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 72 ELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 130
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 131 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 190
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIM AWNP D+P MALPPCH L QFYV + +L
Sbjct: 191 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPCHALXQFYVVNSEL 250
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 251 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 286
>pdb|3EHI|X Chain X, Crystal Structure Of Human Thymidyalte Synthase M190k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 156/216 (72%), Positives = 183/216 (84%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIM AWNP D+P ALPPCH L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLKALPPCHALXQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|1HW3|A Chain A, Structure Of Human Thymidylate Synthase Suggests
Advantages Of Chemotherapy With Noncompetitive
Inhibitors
pdb|1YPV|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|2ONB|A Chain A, Human Thymidylate Synthase At Low Salt Conditions With
Pdpa Bound
Length = 313
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 156/216 (72%), Positives = 183/216 (84%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIM AWNP D+P MALPP H L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALXQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3N5E|A Chain A, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 156/216 (72%), Positives = 183/216 (84%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 42 ELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 100
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 101 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 160
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIM AWNP D+P MALPP H L QFYV + +L
Sbjct: 161 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALCQFYVVNSEL 220
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 221 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 256
>pdb|3N5G|A Chain A, Crystal Structure Of Histidine-Tagged Human Thymidylate
Synthase
Length = 325
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 156/216 (72%), Positives = 183/216 (84%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 42 ELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 100
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 101 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 160
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIM AWNP D+P MALPP H L QFYV + +L
Sbjct: 161 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALXQFYVVNSEL 220
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 221 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 256
>pdb|3EBU|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 156/216 (72%), Positives = 183/216 (84%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIM AWNP D+P MALPP H L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALCQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|4E28|A Chain A, Structure Of Human Thymidylate Synthase In Inactive
Conformation With A Novel Non-Peptidic Inhibitor
Length = 325
Score = 338 bits (868), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 156/216 (72%), Positives = 183/216 (84%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 42 ELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 100
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 101 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 160
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIM AWNP D+P MALPP H L QFYV + +L
Sbjct: 161 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMALPPXHALCQFYVVNSEL 220
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 221 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 256
>pdb|3EGY|X Chain X, Crystal Structure Of Human Thymidyalte Synthase A191k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 337 bits (864), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 155/216 (71%), Positives = 182/216 (84%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EEL
Sbjct: 30 ELQYLGQIQHILRXGVRKDDRTGTGTLSVFGMQARYSLRD-EFPLLTTKRVFWKGVLEEL 88
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+D
Sbjct: 89 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRD 148
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M +DY+ QG+DQLQ +I+TIKTNP+DRRIIM AWNP D+P M LPP H L QFYV + +L
Sbjct: 149 MESDYSGQGVDQLQRVIDTIKTNPDDRRIIMXAWNPRDLPLMKLPPXHALXQFYVVNSEL 208
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|2H2Q|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|3CL9|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Mtx
pdb|3CLB|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|B Chain B, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|C Chain C, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|D Chain D, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3HBB|A Chain A, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|B Chain B, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|C Chain C, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|D Chain D, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3KJS|A Chain A, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|B Chain B, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|C Chain C, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|D Chain D, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
Length = 521
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 177/217 (81%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
+E+QYL L+D+II+ G+ K DRTGVGTLS+FGAQMRF L N PLLTTKRVFW+GV EE
Sbjct: 236 EEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEE 295
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
LLWF++G T AK+LSDKGV IWD N +R +LDS GL + +E DLGPVYGFQWRH+GA Y
Sbjct: 296 LLWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYT 355
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
+Y QG+DQ++ I+ T+KTNP+DRR++ AWNP +P+MALPPCH LAQFYV++G+
Sbjct: 356 HHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGE 415
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS DMGLGVPFNIASY+LLT +IA TGL+
Sbjct: 416 LSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLR 452
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3INV|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3IRM|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRN|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRO|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
Length = 521
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 177/217 (81%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
+E+QYL L+D+II+ G+ K DRTGVGTLS+FGAQMRF L N PLLTTKRVFW+GV EE
Sbjct: 236 EEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEE 295
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
LLWF++G T AK+LSDKGV IWD N +R +LDS GL + +E DLGPVYGFQWRH+GA Y
Sbjct: 296 LLWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYT 355
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
+Y QG+DQ++ I+ T+KTNP+DRR++ AWNP +P+MALPPCH LAQFYV++G+
Sbjct: 356 HHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGE 415
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS DMGLGVPFNIASY+LLT +IA TGL+
Sbjct: 416 LSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLR 452
>pdb|1CI7|A Chain A, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1CI7|B Chain B, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1F28|A Chain A, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|B Chain B, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|C Chain C, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|D Chain D, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
Length = 297
Score = 301 bits (770), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 143/226 (63%), Positives = 172/226 (76%), Gaps = 7/226 (3%)
Query: 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFG-AQMRFDLTNGTFPLLTTKRVFWKG 128
V +EQQYL+L+ II G + DRTG GTLS+F + ++F L N TFPLLTTKRVF +G
Sbjct: 2 VNAEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRG 61
Query: 129 VVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYG 188
V+EELLWFI+G T++ +L +K + IWD N +REYLDSIGL R+EGDLGP+YGFQWRH+G
Sbjct: 62 VIEELLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFG 121
Query: 189 AEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYV 248
AEY D T+Y QG+DQL NII I+T+P DRR+I+ AWNP D+ KMALPPCH QFYV
Sbjct: 122 AEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYV 181
Query: 249 ------ADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 288
+LSCQLYQRS DMGLGVPFNIASY+LLT MIAHV L
Sbjct: 182 HIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDL 227
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 297 bits (760), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 132/216 (61%), Positives = 170/216 (78%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL+++ I+ G+K+SDRTGVG LS FG M+FDL+ FPLLTTK++F +G++EEL
Sbjct: 325 EYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQ-YFPLLTTKKLFLRGIIEEL 383
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFI+G TN L +K V+IW+ N TRE+LD+ L R+ DLGP+YGFQWRH+GAEY +
Sbjct: 384 LWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTN 443
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M+ +Y ++G+DQL+NIIN IK +P RRI++CAWN D+ +MALPPCH L QFYV DGKL
Sbjct: 444 MYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKL 503
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 504 SCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 539
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 132/216 (61%), Positives = 170/216 (78%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL+++ I+ G+K+SDRTGVG LS FG M+FDL+ FPLLTTK++F +G++EEL
Sbjct: 325 EYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQ-YFPLLTTKKLFLRGIIEEL 383
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFI+G TN L +K V+IW+ N TRE+LD+ L R+ DLGP+YGFQWRH+GAEY +
Sbjct: 384 LWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTN 443
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M+ +Y ++G+DQL+NIIN IK +P RRI++CAWN D+ +MALPPCH L QFYV DGKL
Sbjct: 444 MYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKL 503
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 504 SCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 539
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 132/216 (61%), Positives = 170/216 (78%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL+++ I+ G+K+SDRTGVG LS FG M+FDL+ FPLLTTK++F +G++EEL
Sbjct: 325 EYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQ-YFPLLTTKKLFLRGIIEEL 383
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFI+G TN L +K V+IW+ N TRE+LD+ L R+ DLGP+YGFQWRH+GAEY +
Sbjct: 384 LWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTN 443
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M+ +Y ++G+DQL+NIIN IK +P RRI++CAWN D+ +MALPPCH L QFYV DGKL
Sbjct: 444 MYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKL 503
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 504 SCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 539
>pdb|1J3I|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3J|C Chain C, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|D Chain D, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3K|C Chain C, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|D Chain D, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|C Chain C, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|D Chain D, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DGA|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 328
Score = 294 bits (752), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 132/216 (61%), Positives = 170/216 (78%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL+++ I+ G+K+SDRTGVG LS FG M+FDL+ FPLLTTK++F +G++EEL
Sbjct: 45 EYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQ-YFPLLTTKKLFLRGIIEEL 103
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
LWFI+G TN L +K V+IW+ N TRE+LD+ L R+ DLGP+YGFQWRH+GAEY +
Sbjct: 104 LWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTN 163
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
M+ +Y ++G+DQL+NIIN IK +P RRI++CAWN D+ +MALPPCH L QFYV DGKL
Sbjct: 164 MYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKL 223
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 224 SCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 259
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 135/216 (62%), Positives = 165/216 (76%), Gaps = 1/216 (0%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
+E QYL +L ++ G K +RTG S FG QMRFDL+ +FPLLTTK+V + ++EE
Sbjct: 231 EEFQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSR-SFPLLTTKKVALRSIIEE 289
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
LLWFIKGSTN +L K V+IW+ N R++LD G DR+E DLGP+YGFQWRH+GAEY
Sbjct: 290 LLWFIKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYL 349
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
DM DYT +GIDQL IIN IKTNPNDRR+I+C+WN D+ KMALPPCHC QFYV+D K
Sbjct: 350 DMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNK 409
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 288
LSC ++QRS D+GLGVPFNIASYS+LT M+A V GL
Sbjct: 410 LSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGL 445
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 135/216 (62%), Positives = 165/216 (76%), Gaps = 1/216 (0%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
+E QYL +L ++ G K +RTG S FG QMRFDL+ +FPLLTTK+V + ++EE
Sbjct: 227 EEFQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSR-SFPLLTTKKVALRSIIEE 285
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
LLWFIKGSTN +L K V+IW+ N R++LD G DR+E DLGP+YGFQWRH+GAEY
Sbjct: 286 LLWFIKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYL 345
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
DM DYT +GIDQL IIN IKTNPNDRR+I+C+WN D+ KMALPPCHC QFYV+D K
Sbjct: 346 DMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNK 405
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 288
LSC ++QRS D+GLGVPFNIASYS+LT M+A V GL
Sbjct: 406 LSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGL 441
>pdb|3KGB|A Chain A, Crystal Structure Of Thymidylate Synthase 12 FROM
ENCEPHALITOZOON Cuniculi At 2.2 A Resolution
Length = 294
Score = 288 bits (737), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 131/216 (60%), Positives = 170/216 (78%), Gaps = 1/216 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL L+ I++ G ++ DRTG GTLS+FGA MRF L + TFPLLTT+RVF++GVVEEL
Sbjct: 9 EHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEEL 68
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
L+F++G T++K L KGV+IW+ N +++L S+G +DR+EGDLGP+YGFQWRH+GA Y+
Sbjct: 69 LFFLRGETDSKVLEKKGVRIWEKNGAKQFLQSVG-IDREEGDLGPIYGFQWRHFGARYET 127
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
+ Y +G+DQ+ + I I+ NP RRI++ AWNP D+ MALPPCH L QF V DGKL
Sbjct: 128 SASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGSMALPPCHVLFQFNVTDGKL 187
Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
SC +YQRS DMGLGVPFNIASYSLLT ++AH+TGLQ
Sbjct: 188 SCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQ 223
>pdb|2AAZ|A Chain A, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|B Chain B, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|C Chain C, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|D Chain D, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|E Chain E, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|F Chain F, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|G Chain G, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|H Chain H, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|I Chain I, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|J Chain J, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|K Chain K, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|L Chain L, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|M Chain M, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|N Chain N, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|O Chain O, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|P Chain P, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
Length = 317
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 139/238 (58%), Positives = 170/238 (71%), Gaps = 17/238 (7%)
Query: 59 QGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGA-QMRFDLTNGTFP 117
Q NPD +E QYL L+ +II G + DRTG GT++LF RF L + T P
Sbjct: 12 QRSNPDH-------EEYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLP 64
Query: 118 LLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLG 177
LLTTKRVF +GV+ ELLWF+ G T+AK LS +GV IWD N ++E+L+ +GL R+EGDLG
Sbjct: 65 LLTTKRVFLRGVIAELLWFVSGCTDAKMLSSQGVGIWDGNGSKEFLEKVGLGHRREGDLG 124
Query: 178 PVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMAL 237
PVYGFQWRH+GAEY D DY +G+DQLQ +I+TIK NP DRRII+ AWNP D+P MAL
Sbjct: 125 PVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMAL 184
Query: 238 PPCHCLAQFYV----ADG-----KLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVT 286
PPCH QF+V AD KLSC +YQRS D+GLGVPFNIASY+LLT+MIA +T
Sbjct: 185 PPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALIT 242
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|B Chain B, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|C Chain C, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|D Chain D, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|E Chain E, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
Length = 521
Score = 272 bits (695), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 158/217 (72%), Gaps = 2/217 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL LL ++++ G + +RTG+ T S+FG MRFD+ +FPLLTTK+VF +G+ EEL
Sbjct: 237 EFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRE-SFPLLTTKKVFIRGIFEEL 295
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
+WFIKG TN L +K V IW N ++EYL+ IGL R+E DLGP+YGFQWRHY EYK
Sbjct: 296 IWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKT 355
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVA-DGK 252
M DYT G+DQL +I T+K NP DRR I+ AWNP + +MALPPCH L+Q+YV D
Sbjct: 356 MHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNC 415
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 416 LSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 452
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 157/217 (72%), Gaps = 2/217 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL LL ++++ G + +RTG+ T S+FG MRFD+ +FPLLTTK+VF + + EEL
Sbjct: 237 EFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRE-SFPLLTTKKVFIRSIFEEL 295
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
+WFIKG TN L +K V IW N ++EYL+ IGL R+E DLGP+YGFQWRHY EYK
Sbjct: 296 IWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKT 355
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVA-DGK 252
M DYT G+DQL +I T+K NP DRR I+ AWNP + +MALPPCH L+Q+YV D
Sbjct: 356 MHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNC 415
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 416 LSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 452
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|B Chain B, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|C Chain C, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|D Chain D, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|E Chain E, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 519
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 157/217 (72%), Gaps = 2/217 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL LL ++++ G + +RTG+ T S+FG MRFD+ +FPLLTTK+V +G+ EEL
Sbjct: 235 EFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRE-SFPLLTTKKVAIRGIFEEL 293
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
+WFIKG TN L +K V IW N ++EYL+ IGL R+E DLGP+YGFQWRHY EYK
Sbjct: 294 IWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKT 353
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVA-DGK 252
M DYT G+DQL +I T+K NP DRR I+ AWNP + +MALPPCH L+Q+YV D
Sbjct: 354 MHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNC 413
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 414 LSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 450
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|B Chain B, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|C Chain C, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|D Chain D, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
Length = 521
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 156/217 (71%), Gaps = 2/217 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL LL ++++ G + +RTG+ T S+FG MRFD+ +FPLLTTK+V + + EEL
Sbjct: 237 EFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRE-SFPLLTTKKVAIRSIFEEL 295
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
+WFIKG TN L +K V IW N ++EYL+ IGL R+E DLGP+YGFQWRHY EYK
Sbjct: 296 IWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKT 355
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVA-DGK 252
M DYT G+DQL +I T+K NP DRR I+ AWNP + +MALPPCH L+Q+YV D
Sbjct: 356 MHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNC 415
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 416 LSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 452
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|B Chain B, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|C Chain C, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|D Chain D, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|E Chain E, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1SEJ|A Chain A, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|B Chain B, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|C Chain C, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|D Chain D, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|E Chain E, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
Length = 521
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 156/217 (71%), Gaps = 2/217 (0%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E QYL LL ++++ G + +RTG+ T S+FG MRFD+ +FPLLTTK+V + + EEL
Sbjct: 237 EFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRE-SFPLLTTKKVAIRSIFEEL 295
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
+WFIKG TN L +K V IW N ++EYL+ IGL R+E DLGP+YGFQWRHY EYK
Sbjct: 296 IWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKT 355
Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVA-DGK 252
M DYT G+DQL +I T+K NP DRR I+ AWNP + +MALPPCH L+Q+YV D
Sbjct: 356 MHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNC 415
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 416 LSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 452
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/213 (54%), Positives = 146/213 (68%), Gaps = 21/213 (9%)
Query: 77 YLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWF 136
YL LL ++ G + DRTG GT S+FG QMRFDL G FP+LTTK++ + ++ ELLWF
Sbjct: 100 YLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEG-FPVLTTKKLHLRSIIHELLWF 158
Query: 137 IKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFT 196
+KG TN L + GV IWD E+ D + GDLGPVYG+QWR + A
Sbjct: 159 LKGDTNIAYLKENGVTIWD-----EWAD-------ENGDLGPVYGYQWRSWPAP------ 200
Query: 197 DYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQ 256
+ IDQ+ N++ + TNP RR+I+ AWNP + +MALPPCHCL QFYVA+G+LSCQ
Sbjct: 201 --DGRHIDQIANLLKMLHTNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQ 258
Query: 257 LYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LYQRSAD+ LGVPFNIASY+LLT MIA VTGL+
Sbjct: 259 LYQRSADIFLGVPFNIASYALLTMMIAQVTGLK 291
>pdb|3UWL|A Chain A, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|C Chain C, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/254 (50%), Positives = 157/254 (61%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E+ YL L KI++ GH K DRTG GT SLFG QMRFDL G FPLLTTKRV + + EL
Sbjct: 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKG-FPLLTTKRVPFGLIKSEL 60
Query: 134 LWFIKGSTNAKELSDKGVKIWD---------------PNST------------------- 159
LWF+KG TN + L ++ IWD P+ T
Sbjct: 61 LWFLKGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEE 120
Query: 160 -REYLDSI---GLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+++ D+I K G+LG +YG QWRH+ E KD IDQL N+I IKT
Sbjct: 121 HQKFCDAILNDAEFAEKYGELGNIYGAQWRHW--ETKD------GSFIDQLANVIEMIKT 172
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
NP+ RR+I+ AWNP D+P MALPPCH + QFYV +GKLSCQLYQRSAD+ LGVPFNIASY
Sbjct: 173 NPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASY 232
Query: 276 SLLTYMIAHVTGLQ 289
+LLT++IAH TGL+
Sbjct: 233 ALLTHLIAHETGLE 246
>pdb|2ZKR|QQ Chain q, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 160
Score = 228 bits (580), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 131/160 (81%), Gaps = 1/160 (0%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
MTN+KG RRGTR +FSRPFR+HG +PL+ YM++YK GDIVDIKG G VQKGMP K YHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAK 413
TGRV+NVTQHAVG+IVNK+V+ +I+ KRINVRIEHIKHSK R+ FLKRVKEN+ K+KEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 414 EKGIKVNLKRQPAQPRPAHIV-SGRTAPVMLAPIPYEFIA 452
EKG V LKR A PR AH V + P +L PIPYEF+A
Sbjct: 121 EKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>pdb|3UWL|B Chain B, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|D Chain D, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/254 (50%), Positives = 156/254 (61%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
E+ YL L KI++ GH K DRTG GT SLFG QMRFDL G FPLLTTKRV + + EL
Sbjct: 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKG-FPLLTTKRVPFGLIKSEL 60
Query: 134 LWFIKGSTNAKELSDKGVKIWD---------------PNST------------------- 159
LWF+KG TN + L ++ IWD P+ T
Sbjct: 61 LWFLKGDTNIRYLLERNNHIWDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEE 120
Query: 160 -REYLDSI---GLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+++ D+I K G+LG +YG QWRH+ E KD IDQL N+I IKT
Sbjct: 121 HQKFCDAILNDAEFAEKYGELGNIYGAQWRHW--ETKD------GSFIDQLANVIEMIKT 172
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
NP+ RR+I+ AWNP D+P MALPP H + QFYV +GKLSCQLYQRSAD+ LGVPFNIASY
Sbjct: 173 NPDSRRLIVSAWNPEDVPSMALPPXHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASY 232
Query: 276 SLLTYMIAHVTGLQ 289
+LLT++IAH TGL+
Sbjct: 233 ALLTHLIAHETGLE 246
>pdb|3QJ7|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
Length = 264
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 144/213 (67%), Gaps = 21/213 (9%)
Query: 77 YLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWF 136
Y LL +++TG KSDRTG GT SLFG QMR+DL+ G FPLLTTK+V +K V ELLWF
Sbjct: 5 YEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAG-FPLLTTKKVHFKSVAYELLWF 63
Query: 137 IKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFT 196
++G +N L + GV IWD ++ G+LGP+YG QWR + A
Sbjct: 64 LRGDSNIGWLHEHGVTIWDEWAS------------DTGELGPIYGVQWRSWPAP------ 105
Query: 197 DYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQ 256
+ + IDQ+ ++ ++T+P+ RRII+ AWN ++ +MALPPCH QFYVADG+LSCQ
Sbjct: 106 --SGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQ 163
Query: 257 LYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LYQRSAD+ LGVPFNIASY+LLT+M+A GL
Sbjct: 164 LYQRSADLFLGVPFNIASYALLTHMMAAQAGLS 196
>pdb|3BFI|A Chain A, E. Coli Thymidylate Synthase Y209m Mutant Complexed With
5-nitro-dump
Length = 264
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1TLC|A Chain A, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TLC|B Chain B, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TSD|A Chain A, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1TSD|B Chain B, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1DDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1DDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1TDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1TDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1AN5|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AN5|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AXW|A Chain A, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1AXW|B Chain B, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BDU|A Chain A, E. Coli Thymidylate Synthase Complexed With Durd
pdb|1BID|A Chain A, E. Coli Thymidylate Synthase Complexed With Dump
pdb|1TJS|A Chain A, E. Coli Thymidylate Synthase
pdb|1TRG|A Chain A, E. Coli Thymidylate Synthase In Symmetric Complex With
Cb3717 And 2'- Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|A Chain A, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|B Chain B, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 265
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 3 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 61
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 62 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 105
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 106 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 161
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 162 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 196
>pdb|2BBQ|A Chain A, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2BBQ|B Chain B, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2KCE|A Chain A, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|2KCE|B Chain B, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|3TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|1AOB|A Chain A, E. Coli Thymidylate Synthase Complexed With Ddurd
Length = 264
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|2TSC|A Chain A, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
pdb|2TSC|B Chain B, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
Length = 264
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1KCE|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1KCE|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1TLS|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1TLS|B Chain B, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1F4B|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
pdb|1F4C|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4C|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4E|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Tosyl-D-Proline
pdb|1F4F|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1F4F|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1JTQ|A Chain A, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTQ|B Chain B, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTU|A Chain A, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JTU|B Chain B, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JUT|A Chain A, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1JUT|B Chain B, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1KZI|A Chain A, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|1KZI|B Chain B, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|2A9W|A Chain A, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|B Chain B, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|C Chain C, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|D Chain D, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2FTQ|A Chain A, E. Coli Thymidylate Synthase At 1.8 A Resolution
pdb|1TSN|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|3B9H|A Chain A, E. Coli Thymidylate Synthase Complexed With
5-Nitro-2'-Deoxy Uridine
pdb|3BHL|A Chain A, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHL|B Chain B, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHR|A Chain A, E. Coli Ts Complexed With 5-No2dump And Tetrahydrofolate
At 1.9 A Resolution (Space Group 152)
pdb|4IW5|A Chain A, Thymidylate Synthase Ternary Complex With Dump And Cb3717
pdb|4IW5|B Chain B, Thymidylate Synthase Ternary Complex With Dump And Cb3717
Length = 264
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|2G8M|A Chain A, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8M|B Chain B, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8X|A Chain A, Escherichia Coli Y209w Apoprotein
pdb|2G8X|B Chain B, Escherichia Coli Y209w Apoprotein
pdb|4GEV|A Chain A, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
pdb|4GEV|B Chain B, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
Length = 264
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1F4G|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
pdb|1F4G|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
Length = 264
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 142/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMXAQQCDLE 195
>pdb|1EV5|A Chain A, Crystal Structure Analysis Of Ala167 Mutant Of Escherichia
Coli
Length = 264
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRXHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQR+ D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRAXDVFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|2VF0|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
pdb|2VF0|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
Length = 264
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TT+R + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTQRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|2FTN|A Chain A, E. Coli Thymidylate Synthase Y94f Mutant
pdb|2FTO|X Chain X, Y94f Mutant Of Thymidylate Synthase Bound To
Thymidine-5'-Phosphate And 10-Propargyl-5,8-Dideazafolid
Acid
Length = 264
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPV+G QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVFGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1EVG|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli With Unmodified Catalytic Cysteine
Length = 264
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRXHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQR+ D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRTCDVFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|2VET|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With Dump
pdb|3B5B|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
pdb|3B5B|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Length = 264
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TT+R + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTQRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1ZPR|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1ZPR|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 264
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ +LL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHQLL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1FFL|A Chain A, Crystal Structure Of The Apo-Thymidylate Synthase R166q
Mutant
pdb|1FWM|A Chain A, Crystal Structure Of The Thymidylate Synthase R166q Mutant
pdb|1FWM|B Chain B, Crystal Structure Of The Thymidylate Synthase R166q Mutant
Length = 264
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQ+S D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQQSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1DNA|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1DNA|B Chain B, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1BJG|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
Length = 264
Score = 211 bits (538), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS ++ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCNVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1AIQ|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AIQ|B Chain B, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AJM|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
Length = 264
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 142/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSERIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1BQ1|A Chain A, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ1|B Chain B, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ2|A Chain A, E. Coli Thymidylate Synthase Mutant N177a
Length = 264
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 142/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PF IASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFAIASYALLVHMMAQQCDLE 195
>pdb|1JG0|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
pdb|1JG0|B Chain B, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
Length = 264
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 143/219 (65%), Gaps = 29/219 (13%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+D TG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDATGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHY----GAE 190
WF++G TN L + V IWD E+ D + GDLGPVYG QWR + GA
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTPDGAH 108
Query: 191 YKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVAD 250
IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVAD
Sbjct: 109 ------------IDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVAD 156
Query: 251 GKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
GKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 157 GKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1NCE|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
pdb|1NCE|B Chain B, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
Length = 264
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 142/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS + LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCCVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|3BGX|A Chain A, E. Coli Thymidylate Synthase C146s Mutant Complexed With
Dtmp And Mtf
pdb|1TYS|A Chain A, Water-Mediated Substrate(Slash)product Discrimination: The
Product Complex Of Thymidylate Synthase At 1.83
Angstroms
Length = 264
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 142/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL P H QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPSHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1QQQ|A Chain A, Crystal Structure Analysis Of Ser254 Mutant Of Escherichia
Coli Thymidylate Synthase
Length = 264
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 142/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRXHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL P H QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSXDVFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|1EVF|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 142/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRXHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL P H QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQR+ D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRTXDVFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|1KZJ|A Chain A, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|B Chain B, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|C Chain C, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|D Chain D, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|E Chain E, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|F Chain F, Crystal Structure Of Ects W80g/dump/cb3717 Complex
Length = 264
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 142/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V I D E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIGD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|2G89|A Chain A, L. Casei Thymidylate Synthase Y261a In Complex With
Substrate, Dump
Length = 316
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|2G8A|A Chain A, Lactobacillus Casei Y261m In Complex With Substrate, Dump
Length = 316
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|2G86|A Chain A, L. Casei Thymidylate Synthase Y261f In Complex With
Substrate, Dump
Length = 316
Score = 207 bits (528), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1LCA|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Cb3717
pdb|1LCB|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dtmp And H2folate
pdb|1LCE|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Ch2thf
pdb|1NJE|A Chain A, Thymidylate Synthase With 2'-Deoxycytidine
5'-Monophosphate (Dcmp)
pdb|1THY|A Chain A, Refined Structures Of Substrate-Bound And Phosphate-Bound
Thymidylate Synthase From Lactobacillus Casei
pdb|1TSL|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|1TSM|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|2TDM|A Chain A, Structure Of Thymidylate Synthase
pdb|4TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|3BNZ|A Chain A, Crystal Structure Of Thymidylate Synthase Ternary Complex
With Dump And 8a Inhibitor
pdb|3BYX|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00 In Multiple
Binding Modes
pdb|3BZ0|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00
pdb|3C06|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 1
pdb|3C0A|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 2
pdb|3IJZ|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Pthalimidic Derivative 15c
pdb|3IK0|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 7c1
pdb|3IK1|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 20c
Length = 316
Score = 207 bits (528), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1F4D|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
pdb|1F4D|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
Length = 264
Score = 207 bits (527), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 141/215 (65%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMA P H QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMACAPSHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1TDA|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDB|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDC|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|2TDD|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
Length = 315
Score = 207 bits (527), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|2G8D|A Chain A, Lactobacillus Casei Thymidylate Synthase Y261w-dump
Complex
Length = 316
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1EV8|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 141/215 (65%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRXHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL P H QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQR D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRCXDVFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|1TSY|A Chain A, Thymidylate Synthase R179k Mutant
pdb|1TSZ|A Chain A, Thymidylate Synthase R179k Mutant
Length = 316
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P R++I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRKLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1VZA|A Chain A, Thymidylate Synthase E60d Mutant Binary Complex With 2'-
Deoxyuridine 5'-Monophosphate (Dump)
Length = 316
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + +L
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSDL 61
Query: 134 LWFIKGSTNAKELSDKGVKIWD----------------------------PNSTREYLDS 165
LWF+ G TN + L IWD P Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKAPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1VZB|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Dump
pdb|1VZC|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Fdump
pdb|1VZD|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Fdump And Cb3717
pdb|1VZE|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Dump And Cb3717
Length = 316
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + +L
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSQL 61
Query: 134 LWFIKGSTNAKELSDKGVKIWD----------------------------PNSTREYLDS 165
LWF+ G TN + L IWD P Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKAPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1NJC|A Chain A, Thymidylate Synthase, Mutation, N229d With
2'-Deoxycytidine 5'- Monophosphate (Dcmp)
pdb|1NJD|A Chain A, Thymidylate Synthase, Mutation, N229d With 2'-Deoxyuridine
5'- Monophosphate (Dump)
Length = 316
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPF+IASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFDIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1JMI|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVW|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 143/254 (56%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPF+IASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFSIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1TSX|A Chain A, Thymidylate Synthase R179e Mutant
Length = 316
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P R +I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRELIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1BO7|A Chain A, Thymidylate Synthase R179t Mutant
Length = 316
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P R +I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRTLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1BO8|A Chain A, Thymidylate Synthase R178t Mutant
Length = 316
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P R+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSTRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1TSV|A Chain A, Thymidylate Synthase R179a Mutant
pdb|1TSW|A Chain A, Thymidylate Synthase R179a Mutant
Length = 316
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P R +I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRALIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1JMF|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVU|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPF IASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFAIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1JMG|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPF IASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFGIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1BP0|A Chain A, Thymidylate Synthase R23i Mutant
Length = 316
Score = 204 bits (520), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K D T GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDITHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1JMH|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 204 bits (519), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPF IASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFIIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1NJA|A Chain A, Thymidylate Synthase, Mutation, N229c With
2'-deoxycytidine 5'- Monophosphate (dcmp)
pdb|1NJB|A Chain A, Thymidylate Synthase
pdb|1TVV|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 204 bits (519), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPF IASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFCIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1BPJ|A Chain A, Thymidylate Synthase R178t, R179t Double Mutant
Length = 316
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/254 (46%), Positives = 141/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P +I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSTTLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|1BP6|A Chain A, Thymidylate Synthase R23i, R179t Double Mutant
Length = 316
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/254 (46%), Positives = 141/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K D T GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDITHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDS 165
LWF+ G TN + L IW DP Y +
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 166 IGLVD----------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
+ D K GDLG VYG QWR + D IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDT--------IDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P R +I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRTLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>pdb|4DQ1|A Chain A, Thymidylate Synthase From Staphylococcus Aureus.
pdb|4DQ1|B Chain B, Thymidylate Synthase From Staphylococcus Aureus
Length = 321
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 143/251 (56%), Gaps = 47/251 (18%)
Query: 77 YLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWF 136
Y L +++++ G+ ++DRT GT+S FG Q+RFDL+ G FPLLTTK+V +K V ELLWF
Sbjct: 12 YHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKG-FPLLTTKKVSFKLVATELLWF 70
Query: 137 IKGSTNAKELSDKGVKIW----------------------------DPNSTREYLDSI-- 166
IKG TN + L IW DP +Y + +
Sbjct: 71 IKGDTNIQYLLKYNNNIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQ 130
Query: 167 --------GLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPN 218
++ GDLG VYG QWR + D DQL+ +I IK NP+
Sbjct: 131 FKQRILEDDTFAKQFGDLGNVYGKQWRDW--------VDKDGNHFDQLKTVIEQIKHNPD 182
Query: 219 DRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLL 278
RR I+ AWNP ++ MALPPCH + QFYV DGKLSCQLYQRSAD+ LGVPFNIASY+LL
Sbjct: 183 SRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALL 242
Query: 279 TYMIAHVTGLQ 289
T++IA GL+
Sbjct: 243 THLIAKECGLE 253
>pdb|3IZS|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|T Chain T, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|T Chain T, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|T Chain T, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 160
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
M S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK +G++QKGMP K Y GK
Sbjct: 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAK 413
TG V+NVT+ +VGVI+NK V R + KR+N+R+EHIKHSKCR++FL+RVK N KR EAK
Sbjct: 61 TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120
Query: 414 EKGIKVNLKRQPAQPRPAHIVSGR-TAPVMLAPIPYE 449
+G+ V LKRQPAQPR + IVS P LAP+PYE
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157
>pdb|1TIS|A Chain A, Crystal Structure Of Thymidylate Synthase From T4 Phage
Length = 286
Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 25/221 (11%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QY L+ I + G++ DRTG GT++LFG+++R+DLT G FP +TTK++ WK + EL+
Sbjct: 2 KQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKG-FPAVTTKKLAWKACIAELI 60
Query: 135 WFIKGSTNAKELS-------DKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHY 187
WF+ GSTN +L +G +WD N + D + G+LGP+YG QWR +
Sbjct: 61 WFLSGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKD----LGYHSGELGPIYGKQWRDF 116
Query: 188 GAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFY 247
G G+DQ+ +I+ IK PNDRR I+ AWNP ++ MALPPCH QF
Sbjct: 117 G-------------GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFN 163
Query: 248 VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 288
V +G L Q YQRS D+ LG+PFNIASY+ L +++A + L
Sbjct: 164 VRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNL 204
>pdb|4F2V|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
pdb|4F2V|B Chain B, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
Length = 272
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 130/215 (60%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L K++ G +K+DRTG GTLS+FG Q RF+L +G FPL+TTKR + ++ LL
Sbjct: 2 KQYLELXQKVLDEGTQKNDRTGTGTLSIFGHQXRFNLQDG-FPLVTTKRCHLRSIIHLLL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V I D E+ D + GDLGPV+G QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTILD-----EWAD-------ENGDLGPVHGKQWRAWPTP---- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ K A P H QFYVADGKLS
Sbjct: 105 ----DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKXANAPSHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLY RS D+ L +PF IAS +LL + A L+
Sbjct: 161 CQLYARSEDVFLSLPFAIASGALLVHXXAQQCDLE 195
>pdb|3IZR|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 164
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
M G R TRDLF+RPFR+ G IPL+ Y++ YKVG+ VD+K +GAV KGMP K YHG+
Sbjct: 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAK 413
TGRV+NVT+ A+GV +NK+V RII KRI+VR+EH++ S+C E+FL+R N+ + EAK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAK 120
Query: 414 EKGIKVNLKRQPAQPRPAHIVSGRTAPVMLAPIPYEFI 451
+G ++ KRQPA P+P +V G T + PIPY+ +
Sbjct: 121 ARGEVISTKRQPAGPKPGFMVEGTTIET-VTPIPYDVV 157
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|B Chain B, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|C Chain C, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|D Chain D, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
Length = 327
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 128/241 (53%), Gaps = 29/241 (12%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ I+ TG +S+RTG+ T+ + GA +RFDL G FP +TTK++ +K + EL+
Sbjct: 6 KQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQG-FPAVTTKKLAFKSAIGELV 64
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHY------G 188
F++ + +A E G K+WD N+ R DLG VYG QWR +
Sbjct: 65 GFLRATRSAAEFRALGCKVWDANANENAQWLANPYRRGADDLGDVYGVQWRRWPGYKVLD 124
Query: 189 AEYKDMFTDYTDQG--------------------IDQLQNIINTIKTNPNDRRIIMCAWN 228
A D T +G IDQL++ ++TI +P+ RRI+ WN
Sbjct: 125 AHADAQIADATSRGFRIVARFEEGGADKVLLHKAIDQLRDCLDTIVRDPSSRRILFHGWN 184
Query: 229 PIDMPKMALPPCHCLAQFY--VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVT 286
P + ++ALP CH L QF V ++S LY RS D+GLG PFN+A + L ++ +T
Sbjct: 185 PAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLT 244
Query: 287 G 287
G
Sbjct: 245 G 245
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 110/199 (55%), Gaps = 22/199 (11%)
Query: 92 SDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIK-GSTNAKELSDKG 150
SD T TLS+ QMRFD N P+LTTK+V WK ++ELLW + S + +L+ G
Sbjct: 32 SDGTPAHTLSVISKQMRFD--NSEVPILTTKKVAWKTAIKELLWIWQLKSNDVNDLNMMG 89
Query: 151 VKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNII 210
V IWD +++G +G YGFQ G + + + + +DQ+ ++
Sbjct: 90 VHIWDQ------------WKQEDGTIGHAYGFQ---LGKKNRSL----NGEKVDQVDYLL 130
Query: 211 NTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPF 270
+ +K NP+ RR I WNP ++ MAL PC Q+YV GKL ++ RS DM LG PF
Sbjct: 131 HQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPF 190
Query: 271 NIASYSLLTYMIAHVTGLQ 289
N+ Y++L MIA VTG +
Sbjct: 191 NVFQYNVLQRMIAQVTGYE 209
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 110/199 (55%), Gaps = 22/199 (11%)
Query: 92 SDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIK-GSTNAKELSDKG 150
SD T TLS+ QMRFD N P+LTTK+V WK ++ELLW + S + +L+ G
Sbjct: 33 SDGTPAHTLSVISKQMRFD--NSEVPILTTKKVAWKTAIKELLWIWQLKSNDVNDLNMMG 90
Query: 151 VKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNII 210
V IWD +++G +G YGFQ G + + + + +DQ+ ++
Sbjct: 91 VHIWDQ------------WKQEDGTIGHAYGFQ---LGKKNRSL----NGEKVDQVDYLL 131
Query: 211 NTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPF 270
+ +K NP+ RR I WNP ++ MAL PC Q+YV GKL ++ RS DM LG PF
Sbjct: 132 HQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPF 191
Query: 271 NIASYSLLTYMIAHVTGLQ 289
N+ Y++L MIA VTG +
Sbjct: 192 NVFQYNVLQRMIAQVTGYE 210
>pdb|1S1I|Q Chain Q, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 100
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 63/100 (63%), Positives = 78/100 (78%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
M S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK +G++QKGMP K Y GK
Sbjct: 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSK 393
TG V+NVT+ +VGVI+NK V R + KR+N+R+EHIKHSK
Sbjct: 61 TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSK 100
>pdb|3JYW|Q Chain Q, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 116
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 77/97 (79%)
Query: 297 SKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGR 356
S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK +G++QKGMP K Y GKTG
Sbjct: 3 SHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGV 62
Query: 357 VFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSK 393
V+NVT+ +VGVI+NK V R + KR+N+R+EHIKHSK
Sbjct: 63 VYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSK 99
>pdb|4A17|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 157
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 92/143 (64%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
MT+S GYRR TR F++ ++ G + +S Y+ YKVG+ VDI G+ KGMP+K YHG+
Sbjct: 1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGR 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAK 413
TG+VFNV ++GVIV++ V R I KR++V+IEH++ S + KR + N+ + E
Sbjct: 61 TGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPSNVKTALSKRYQANDQAKAEGN 120
Query: 414 EKGIKVNLKRQPAQPRPAHIVSG 436
+ G +V+ KR P QP A V G
Sbjct: 121 KAGKRVSTKRNPGQPLEAVQVQG 143
>pdb|3ZF7|U Chain U, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 159
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 100/161 (62%), Gaps = 8/161 (4%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
M +S GY+ GTR LF++ FR+HG +S + +KVGD VD+ AV+ GMP K YHG+
Sbjct: 1 MVHSHGYKCGTRHLFAKKFRKHGVPSVSTILTNFKVGDYVDVVADAAVRAGMPHKYYHGR 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAK 413
TG V+NVT VGVI+NK VR R + KRI VR EH++ S+C+E F +++K+ E R AK
Sbjct: 61 TGIVWNVTPRGVGVIINKPVRNRTVRKRICVRFEHVRKSRCQEAFKQKLKDLEAFR-AAK 119
Query: 414 EKGIKVNLKRQPAQ------PRPAHIVSGRTAPVMLAPIPY 448
+ G + K+ + P+ +++ RTA A IPY
Sbjct: 120 KAGTPLPPKKVSTRNGGFVCPKKVEVLARRTAD-YEAMIPY 159
>pdb|3J21|R Chain R, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 97
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
+ + +RR TR S+ RR G PL+ +++ ++VG V I + KGMP +HG+
Sbjct: 2 VQKAHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGR 61
Query: 354 TGRV 357
TG V
Sbjct: 62 TGTV 65
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 88 GHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKG----VVEELLWFIKGSTNA 143
G+ + T ++F + F LT TF W G ++L W I G
Sbjct: 501 GYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPG---V 557
Query: 144 KELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGI 203
E + G+ + P+ LD+ + R+ LG Y F H G YKD D G
Sbjct: 558 LEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQ--DPASFGA 615
Query: 204 DQLQNIINTIKTNPNDRRIIM 224
D L ++N+ + N R ++
Sbjct: 616 DSL--LLNSSRHYLNIRYTLL 634
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 88 GHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKG----VVEELLWFIKGSTNA 143
G+ + T ++F + F LT TF W G ++L W I G
Sbjct: 501 GYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPG---V 557
Query: 144 KELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGI 203
E + G+ + P+ LD+ + R+ LG Y F H G YKD D G
Sbjct: 558 LEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQ--DPASFGA 615
Query: 204 DQLQNIINTIKTNPNDRRIIM 224
D L ++N+ + N R ++
Sbjct: 616 DSL--LLNSSRHYLNIRYTLL 634
>pdb|1B2W|H Chain H, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
Length = 220
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 163 LDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRI 222
L+ IG +D +G++ HY ++KD FT D+ + L +N+++ P D +
Sbjct: 45 LEWIGRIDPSDGEV---------HYNQDFKDRFTISRDKSKNTLYLQMNSLR--PEDTAV 93
Query: 223 IMCA 226
CA
Sbjct: 94 YYCA 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,407,192
Number of Sequences: 62578
Number of extensions: 637705
Number of successful extensions: 1640
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 139
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)