Query psy2355
Match_columns 452
No_of_seqs 347 out of 1389
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:52:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0673|consensus 100.0 1.1E-84 2.4E-89 619.1 18.0 244 71-315 7-256 (293)
2 TIGR03284 thym_sym thymidylate 100.0 4.5E-77 9.8E-82 591.6 18.4 232 75-315 1-259 (296)
3 PRK13821 thyA thymidylate synt 100.0 2.7E-76 5.8E-81 590.9 20.2 243 74-320 1-280 (323)
4 PTZ00164 bifunctional dihydrof 100.0 1.3E-74 2.8E-79 612.7 20.6 245 70-315 227-477 (514)
5 PRK01827 thyA thymidylate synt 100.0 6E-72 1.3E-76 549.7 18.5 221 74-315 1-227 (264)
6 COG0207 ThyA Thymidylate synth 100.0 4.9E-71 1.1E-75 538.5 19.5 221 74-314 3-230 (268)
7 PTZ00189 60S ribosomal protein 100.0 8.2E-71 1.8E-75 501.1 14.0 159 294-452 1-160 (160)
8 PLN00190 60S ribosomal protein 100.0 4.5E-70 9.8E-75 495.4 13.9 157 294-451 1-157 (158)
9 PF00303 Thymidylat_synt: Thym 100.0 5E-64 1.1E-68 495.4 16.2 244 74-333 1-253 (269)
10 KOG1732|consensus 100.0 4.1E-64 8.8E-69 459.0 9.8 159 294-452 1-160 (160)
11 cd00351 TS_Pyrimidine_HMase Th 100.0 1.8E-61 3.8E-66 463.6 18.3 202 76-299 1-203 (215)
12 PF01157 Ribosomal_L21e: Ribos 100.0 3.4E-42 7.4E-47 293.2 6.5 99 295-393 1-99 (99)
13 PRK04306 50S ribosomal protein 100.0 5E-42 1.1E-46 291.2 7.3 98 293-394 1-98 (98)
14 PRK00956 thyA thymidylate synt 100.0 3.2E-40 6.9E-45 315.5 16.8 185 70-299 7-191 (208)
15 TIGR03283 thy_syn_methano thym 100.0 4.5E-40 9.7E-45 312.6 16.7 184 70-299 5-188 (199)
16 COG2139 RPL21A Ribosomal prote 100.0 1.3E-36 2.9E-41 254.8 7.0 97 296-396 2-98 (98)
17 PRK12281 rplX 50S ribosomal pr 65.0 9.2 0.0002 31.6 3.8 48 326-393 6-53 (76)
18 TIGR01079 rplX_bact ribosomal 63.5 9.1 0.0002 33.5 3.7 49 326-394 3-51 (104)
19 CHL00141 rpl24 ribosomal prote 58.8 13 0.00028 31.2 3.7 48 326-393 8-55 (83)
20 PTZ00194 60S ribosomal protein 57.5 30 0.00065 32.1 6.1 65 327-401 47-118 (143)
21 PRK00004 rplX 50S ribosomal pr 54.6 16 0.00035 31.9 3.7 48 326-393 4-51 (105)
22 smart00739 KOW KOW (Kyprides, 50.1 20 0.00043 22.8 2.8 26 327-362 2-27 (28)
23 PF09953 DUF2187: Uncharacteri 33.3 60 0.0013 25.7 3.5 34 324-371 1-34 (57)
24 COG0198 RplX Ribosomal protein 33.2 79 0.0017 27.9 4.6 47 326-394 4-50 (104)
25 PF02211 NHase_beta: Nitrile h 32.0 36 0.00078 33.6 2.6 36 325-361 133-169 (222)
26 PF06940 DUF1287: Domain of un 30.9 53 0.0012 31.2 3.4 42 312-374 91-133 (164)
27 TIGR01080 rplX_A_E ribosomal p 29.5 60 0.0013 29.0 3.3 33 327-369 42-74 (114)
28 COG1588 POP4 RNase P/RNase MRP 27.9 48 0.001 28.8 2.3 47 329-384 16-62 (95)
29 PF12407 Abdominal-A: Homeobox 27.0 55 0.0012 21.4 1.9 17 400-416 3-20 (24)
30 cd01289 FabA_like Domain of un 24.0 1.5E+02 0.0033 26.5 5.0 87 248-344 22-110 (138)
31 PRK01191 rpl24p 50S ribosomal 23.0 95 0.0021 28.1 3.4 33 327-369 46-78 (120)
32 KOG4101|consensus 22.0 1.1E+02 0.0024 28.7 3.6 58 95-155 43-113 (175)
33 PF09629 YorP: YorP protein; 21.6 87 0.0019 25.3 2.5 30 326-359 6-35 (71)
No 1
>KOG0673|consensus
Probab=100.00 E-value=1.1e-84 Score=619.07 Aligned_cols=244 Identities=64% Similarity=1.144 Sum_probs=235.3
Q ss_pred CchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcC
Q psy2355 71 QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKG 150 (452)
Q Consensus 71 ~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g 150 (452)
++.|.+||+++++||++|+.+.||||+||+|+||.||||+|++. |||||||||+|+.+++|||||++|+||.+.|.++|
T Consensus 7 ~~eE~~YL~lv~~Ii~~G~~r~DrtgtgTlSvFg~qmrf~Lr~t-fPLLTTKrVfwrgV~EElLwfi~G~t~ak~l~~kg 85 (293)
T KOG0673|consen 7 NHEEFQYLNLVKHIISNGARRMDRTGTGTLSVFGCQMRFSLRDT-FPLLTTKRVFWRGVVEELLWFISGSTDAKVLEEKG 85 (293)
T ss_pred chhHHHHHHHHHHHHhcCCccCCcCCCceeeeeeeeeeeehhcc-ccchhhhhHHHHHHHHHHHHHHhCCCccchhhhcC
Confidence 78899999999999999999999999999999999999999995 99999999999999999999999999999999999
Q ss_pred CccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCC
Q psy2355 151 VKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPI 230 (452)
Q Consensus 151 ~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~ 230 (452)
++|||.|++++|||+.|+..+++||+||+||+||||||+.|.+|+++|.++++|||..||++||+||++||+|+++|||.
T Consensus 86 v~IWd~ngsrefLds~G~~~re~GDlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAwNP~ 165 (293)
T KOG0673|consen 86 VHIWDGNGSREFLDSVGFTAREEGDLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAWNPL 165 (293)
T ss_pred ceeecCCchHHHHHhcCCCccccCCcccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---cc
Q psy2355 231 DMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GT 304 (452)
Q Consensus 231 dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~T 304 (452)
|+.+|+|||||.++||||.+|+|+|++||||.||.||+||||++|++|++|||++|||+||+|+|+.+. |.. ..
T Consensus 166 dl~~malpPCH~~~QFyV~~GelScq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al 245 (293)
T KOG0673|consen 166 DLGKMALPPCHTFCQFYVANGELSCQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDAL 245 (293)
T ss_pred ccccccCCccceeeEEEecCCeeeehhhhhccccccCccchhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 665 44
Q ss_pred cccccCccccC
Q psy2355 305 RDLFSRPFRRH 315 (452)
Q Consensus 305 R~mfsR~fR~~ 315 (452)
+.++.|++|.-
T Consensus 246 ~~Ql~r~PrpF 256 (293)
T KOG0673|consen 246 QEQLQRPPRPF 256 (293)
T ss_pred HHHHhcCCCCC
Confidence 56688888843
No 2
>TIGR03284 thym_sym thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
Probab=100.00 E-value=4.5e-77 Score=591.57 Aligned_cols=232 Identities=56% Similarity=0.932 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCCccc
Q psy2355 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIW 154 (452)
Q Consensus 75 ~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~~iW 154 (452)
+||+++|++||++|+.++||||+||+|+||++|||||+++ ||++||||++||++++||||||+|+||+++|++.||+||
T Consensus 1 ~qYl~l~~~Il~~G~~~~drtG~gt~s~fg~~~r~dl~~~-fPllTTKk~~~k~~i~ElLWfl~G~tn~~~L~~~~v~IW 79 (296)
T TIGR03284 1 KQYLDLLRDILENGHQKGDRTGTGTISVFGYQMRFDLSKG-FPLLTTKKVPFRLIASELLWFLKGDTNIRYLLDHNVNIW 79 (296)
T ss_pred ChHHHHHHHHHHhCCcCCCCCCCcccccccceEEEeCCCC-cceeeeechhHHHHHHHHHHHHhCCccHHHHHHcCCeec
Confidence 4899999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhcCcc---------------------cCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHH
Q psy2355 155 DPNSTREYLDSIGLV---------------------DRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTI 213 (452)
Q Consensus 155 d~n~~~~~l~~~g~~---------------------~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~L 213 (452)
|+|++++|+++.|+. .+++|||||+||+|||+|++. +|+++|||++||++|
T Consensus 80 d~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlGpvYG~qwr~~~~~--------~g~~iDQi~~vI~~L 151 (296)
T TIGR03284 80 DEWAFERWVKSDDYQGPDMTDFGLRAQDDEEEDDEFADKYGDLGPVYGKQWRSWATP--------DGETIDQIKNVIEMI 151 (296)
T ss_pred CCcccccccccccccccccccccccccccccccccccccCCCCccchhhhheeccCC--------CCCchHHHHHHHHHH
Confidence 999999999987651 134799999999999999752 357899999999999
Q ss_pred hcCCCCcceEEEeeCCCCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeee
Q psy2355 214 KTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSN 293 (452)
Q Consensus 214 k~nP~SRR~Iis~WnP~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~ 293 (452)
|+||+|||+|+++|||.|+++|+|||||+++||+|+||+|+|++||||||+++|+|||+++|++||+|||++||+++|+|
T Consensus 152 k~nP~sRR~iv~~wnp~dl~~m~lpPCh~~~QF~V~dgkL~~~~~qRS~D~~lG~pfNiasyalL~~mvA~~~Gl~~G~~ 231 (296)
T TIGR03284 152 KTNPDSRRLIVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQETGLEVGEF 231 (296)
T ss_pred hcCCchhheEEEeeChhhhhccCCccceEEEEEEEeCCEEEEEEEEechhhhhhhhhhHHHHHHHHHHHHHHhCCEeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc---ccc---cccccccCccccC
Q psy2355 294 MTNSKG---YRR---GTRDLFSRPFRRH 315 (452)
Q Consensus 294 mHnSkG---YRr---~TR~mfsR~fR~~ 315 (452)
+|++.+ |.+ ..+.+++|.+++-
T Consensus 232 ~h~igdaHIY~nhi~~v~~qL~R~p~~~ 259 (296)
T TIGR03284 232 VHTLGDAHLYSNHLEQAKLQLTREPRPL 259 (296)
T ss_pred EEEEEEEEEehhHHHHHHHHhcCCCCCC
Confidence 999865 775 6778899998854
No 3
>PRK13821 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=2.7e-76 Score=590.93 Aligned_cols=243 Identities=35% Similarity=0.636 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCCcc
Q psy2355 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKI 153 (452)
Q Consensus 74 e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~~i 153 (452)
|+||++||++||++|..+.||||++|+|+||+||||||++| ||+|||||++||++++||||||+|+||+++|++.|++|
T Consensus 1 m~qYldl~~~Il~~G~~~~dRTGtgt~sifg~~~rfdL~~g-fPllTTKkv~~ks~i~ELLWfl~G~tn~~~L~~~~v~I 79 (323)
T PRK13821 1 MKQYLDLVRTILDTGTWQENRTGIRTISIPGAMLRFDLQQG-FPAVTTKKLAFKSAIGELVGFLRASRSAADFRALGCKV 79 (323)
T ss_pred CHHHHHHHHHHHHhCCcCCCCCCCccccccCceEEEECCCC-CceeEeecchHHHHHHHHHHHHhCCCcHHHHHHcCCcc
Confidence 57999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ccCCchh--hhhhhcCcccCCCCCccccccccccccccccccccccC--------------------CC-------cchh
Q psy2355 154 WDPNSTR--EYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDY--------------------TD-------QGID 204 (452)
Q Consensus 154 Wd~n~~~--~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y--------------------~~-------~~~D 204 (452)
||+|+++ +|++++ + +.++|||||+||+|||+|++ +.....+| +| +++|
T Consensus 80 Wd~~~~~~~~~~~~~-~-~~~~gdLGpvYG~Qwr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iD 156 (323)
T PRK13821 80 WDQNANENAQWLANP-Y-RQGVDDLGDVYGVQWRQWPG-YKVLDASADAQIADATSRGFRIVARFDEDGAPKVLLYKAID 156 (323)
T ss_pred CCCcccccccccccc-c-cccCCcccccceeeeeeccc-ccccccccccccccccccccccccccCCCCccccccccChh
Confidence 9999865 688765 2 34578999999999999976 32222222 23 4689
Q ss_pred HHHHHHHHHhcCCCCcceEEEeeCCCCCCCCCCCCceeeEEEEEe--CCEEEEEEEeecCccCCcccchHHHHHHHHHHH
Q psy2355 205 QLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVA--DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMI 282 (452)
Q Consensus 205 Ql~~vI~~Lk~nP~SRR~Iis~WnP~dl~~~~lpPC~~~~QF~Vr--dGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mI 282 (452)
||++||++||+||+|||+|+++|||.++++|+|||||+++||+|. +|+|+|++||||+|++||+||||+|||+|++||
T Consensus 157 Qi~~vI~~Lk~nP~sRR~I~~~Wnp~dl~~maLpPCh~~~QF~V~~~~g~L~~~lyQRS~D~~LG~PfNiasyalL~~mi 236 (323)
T PRK13821 157 QLRQCLDTIMNNPGSRRILFHGWNPAVLDEIALPACHLLYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLV 236 (323)
T ss_pred HHHHHHHHHhcCCCccceEEEEeChhHhccccCCcceEEEEEEEecCCCeEEEEEEeccccccccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999994 999999999999999999999999999999999
Q ss_pred HHHhCCceeeecccccc---ccc---cccccccCccccCCCCCc
Q psy2355 283 AHVTGLQRTSNMTNSKG---YRR---GTRDLFSRPFRRHGTIPL 320 (452)
Q Consensus 283 A~~~Gl~~G~~mHnSkG---YRr---~TR~mfsR~fR~~g~~pl 320 (452)
|++||++||+|+|++++ |.+ ..+.+++|++++.....+
T Consensus 237 A~~~gl~~G~~ih~igdaHIY~nhi~~v~eqL~R~P~~~P~l~i 280 (323)
T PRK13821 237 GRLTGYTPRWFTYFIGDAHIYENQLDMLQEQLTREPYESPRLVI 280 (323)
T ss_pred HHHhCCEeeeEEEEEEEEEEeHhHHHHHHHHhcCCCCCCCEEEE
Confidence 99999999999999865 765 677889999886543333
No 4
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=1.3e-74 Score=612.69 Aligned_cols=245 Identities=62% Similarity=1.068 Sum_probs=235.5
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
.+|.|+||+++|++||++|+.++||||++|+|+||++|||||+++ ||++||||++||++++||||||+|+||+++|++.
T Consensus 227 ~~~~~~~Yl~l~~~Il~~G~~~~~rtG~~t~s~fg~~~r~dl~~~-fPllTtkk~~~k~~~~EllWfl~g~tn~~~l~~~ 305 (514)
T PTZ00164 227 REHEEFQYLDLIADIIKNGNVKEDRTGVGTISKFGYQMRFDLRES-FPLLTTKKVFLRGIIEELLWFIRGETNGNLLLDK 305 (514)
T ss_pred cCCcHHHHHHHHHHHHHhCCcCCCCCCCceeeecCceEEEeCCCC-CceeeechhhHHHHHHHHHHHHhCCccHHHHHHc
Confidence 579999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
||+|||+|+++.|+++.++..+++|||||+||+|||+|++.|.++.++|+++++|||++||++||+||+|||+|+++|||
T Consensus 306 ~~~iWd~w~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~~~~~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~i~~~wn~ 385 (514)
T PTZ00164 306 GVRIWEGNGSREFLDSRGLTHREENDLGPVYGFQWRHFGAEYKDMHDDYTGQGVDQLKNIIETIKNNPDDRRLILTAWNP 385 (514)
T ss_pred CCEecCCCcccchhcccccccccCCCcccchhhhhhccccccccccccccCCcccHHHHHHHHHhcCCcchheEEEEECH
Confidence 99999999999999999887788999999999999999999999999999889999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---c
Q psy2355 230 IDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---G 303 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~ 303 (452)
.|+++|+|||||+++||+|+||+|+|++||||||+++|+||||++|++||+|||++||+++|+|+|++.+ |.+ .
T Consensus 386 ~d~~~~~l~PC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~ya~L~~~iA~~~gl~~G~~~h~~g~~HIY~~h~~~ 465 (514)
T PTZ00164 386 SALDQMALPPCHLLSQFYVNDGKLSCMMYQRSCDMGLGVPFNIASYALLTHMIAQVCGLRPGEFVHFLGDAHVYSNHVDA 465 (514)
T ss_pred hHhcccCCCCCceEEEEEEeCCEEEEEEEEehhhhhhcchhhHHHHHHHHHHHHHHhCCEeeEEEEEeccceeehhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865 775 6
Q ss_pred ccccccCccccC
Q psy2355 304 TRDLFSRPFRRH 315 (452)
Q Consensus 304 TR~mfsR~fR~~ 315 (452)
.+.+++|.+++-
T Consensus 466 ~~~ql~r~p~~~ 477 (514)
T PTZ00164 466 LKEQLERVPYPF 477 (514)
T ss_pred HHHHhcCCCCCC
Confidence 677899988754
No 5
>PRK01827 thyA thymidylate synthase; Reviewed
Probab=100.00 E-value=6e-72 Score=549.71 Aligned_cols=221 Identities=58% Similarity=0.991 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCCcc
Q psy2355 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKI 153 (452)
Q Consensus 74 e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~~i 153 (452)
|+||+++|++||++|+.+.||||++|+++||+++||||+++ ||++||||++||++++||||||+|+||+++|+++|++|
T Consensus 1 m~~Yl~l~~~Il~~G~~~~drTg~~t~~i~g~~~r~dl~~~-fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~i 79 (264)
T PRK01827 1 MKQYLDLLRKILDEGTKKNDRTGTGTLSVFGAQMRFDLSKG-FPLLTTKKVHFKSIIHELLWFLRGDTNIAYLQENGVHI 79 (264)
T ss_pred ChHHHHHHHHHHHhCCCCCCCCCCceEEeccceEEEECCCC-CcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCCCh
Confidence 57999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCCCCC
Q psy2355 154 WDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMP 233 (452)
Q Consensus 154 Wd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~dl~ 233 (452)
||+|+ +++||+|++||+|||+|++ ++++++|||++||++||+||+|||+|+++|||.+++
T Consensus 80 Wd~~~------------~~~g~lg~~YG~q~r~~~~--------~~g~~~DQl~~vI~~Lk~np~sRR~ii~~wnp~dl~ 139 (264)
T PRK01827 80 WDEWA------------DENGDLGPVYGKQWRSWPT--------PDGRHIDQISKVIEQLKTNPDSRRLIVSAWNPGELD 139 (264)
T ss_pred hhhcc------------ccCCccCCcchHHHhcCcC--------CCCchHHHHHHHHHHHhcCCCchhheeeeeCHhHhh
Confidence 99983 4679999999999999975 235679999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---ccccc
Q psy2355 234 KMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GTRDL 307 (452)
Q Consensus 234 ~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~TR~m 307 (452)
+|+|||||+++||+|++|+|+|++||||||+++|+|||+++|++||+|||+.||+++|+|+|++.+ |.+ ..+.+
T Consensus 140 ~~~l~PC~~~~qf~V~~g~L~~~~~qRS~D~~lG~p~Ni~~y~~L~~~vA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~q 219 (264)
T PRK01827 140 KMALPPCHALFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQQTGLKVGEFVHTIGDAHIYSNHLEQAREQ 219 (264)
T ss_pred cccCCceEEEEEEEEeCCEEEEEEEEehhhhhccccchHHHHHHHHHHHHHHcCCeeEEEEEEEeeEEEEhhHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865 665 67788
Q ss_pred ccCccccC
Q psy2355 308 FSRPFRRH 315 (452)
Q Consensus 308 fsR~fR~~ 315 (452)
++|.+++.
T Consensus 220 l~r~p~~~ 227 (264)
T PRK01827 220 LSREPRPL 227 (264)
T ss_pred hcCCCCCC
Confidence 99988754
No 6
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.9e-71 Score=538.49 Aligned_cols=221 Identities=53% Similarity=0.960 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCCcc
Q psy2355 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKI 153 (452)
Q Consensus 74 e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~~i 153 (452)
|++|++++++|+++|..+.||||++|+|+||++|+||++++.||++|||++.||+++.|||||++|.+|++.|.+.|++|
T Consensus 3 ~~~yl~l~~~ile~G~~~~drt~~~t~sv~g~q~~~Dl~~~~fpllttk~v~~ks~i~Ellwf~~g~tn~~~l~~~gv~i 82 (268)
T COG0207 3 MKQYLDLIEHILENGTSRSDRTGTGTLSVFGYQMRFDLSKSEFPLLTTKKVHLKSIIHELLWFLRGDTNIAYLKENGVKI 82 (268)
T ss_pred hhHHHHHHHHHHHcCcccccccccceEEEeccEEEEecccCCCceeEeeeeehhhhhHhhhhhhcCCchHHHHHhcCccc
Confidence 89999999999999988899999999999999999999996699999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhhcCcccCCC-CCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCCCC
Q psy2355 154 WDPNSTREYLDSIGLVDRKE-GDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDM 232 (452)
Q Consensus 154 Wd~n~~~~~l~~~g~~~~~~-GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~dl 232 (452)
||+|+ +++ ||+|++||+|||+|... ++.++|||.+||++||+||+|||+|+++|||.++
T Consensus 83 Wdew~------------~e~~Gdlg~vYg~q~r~~~~~--------~g~~iDQi~~vIe~Lk~np~sRR~ivs~WnP~e~ 142 (268)
T COG0207 83 WDEWA------------DENYGDLGPVYGYQWRKWLRP--------DGEKIDQIDKVIEQLKENPDSRRAIVSAWNPGEL 142 (268)
T ss_pred ccccc------------ccccCcccceeeEeeeeccCc--------CCCccHHHHHHHHHHhcCCcccceEEEecCcccc
Confidence 99996 455 99999999999999753 4678999999999999999999999999999999
Q ss_pred CCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---cccc
Q psy2355 233 PKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GTRD 306 (452)
Q Consensus 233 ~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~TR~ 306 (452)
++|+|||||+++||+|+||+|+|++||||||++||+||||+||++|++|||++||+|+|+|+|++.+ |.+ ..+.
T Consensus 143 ~~m~l~PC~~l~qF~V~~gkL~~~lyqRS~Di~lg~pfNi~syalL~~mvA~~~Gle~G~f~h~~~daHIY~nh~e~~~~ 222 (268)
T COG0207 143 DEMALPPCHILFQFYVRDGKLSCTLYQRSNDVFLGVPFNIASYALLTHMVAQVTGLEPGEFVHTIGDAHIYDNHFDQAKE 222 (268)
T ss_pred ccccCCCcEEEEEEEEECCEEEEEEEEecccccccccHHHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEEhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864 776 4556
Q ss_pred cccCcccc
Q psy2355 307 LFSRPFRR 314 (452)
Q Consensus 307 mfsR~fR~ 314 (452)
+++|.++.
T Consensus 223 ql~R~p~~ 230 (268)
T COG0207 223 QLKREPRP 230 (268)
T ss_pred HhccCCCC
Confidence 68888873
No 7
>PTZ00189 60S ribosomal protein L21; Provisional
Probab=100.00 E-value=8.2e-71 Score=501.15 Aligned_cols=159 Identities=60% Similarity=0.955 Sum_probs=156.6
Q ss_pred ccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeec
Q psy2355 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRV 373 (452)
Q Consensus 294 mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v 373 (452)
|.+|+|||++||+||||+||+||++||++||++|++||+|||++||||||||||+|||||||+||||||+||||+|||+|
T Consensus 1 M~~s~G~R~~TR~~fsk~~R~~G~~pls~~l~~yk~GD~VdIk~d~svqkGMPhk~YHGkTG~V~nv~~~A~gViV~k~v 80 (160)
T PTZ00189 1 MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKRV 80 (160)
T ss_pred CCCCCCccccchhhhCccccccCCCcHHHHHHHccCCCEEEEEecCCeecCCCcccccCCCeEEEeecCeEEEEEEEEEE
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeeccccccCChHHHHHHHhHhHHHHHHHHHcCCccccCCCCCCCcCeeEeecC-CcceeeccccceecC
Q psy2355 374 RTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGR-TAPVMLAPIPYEFIA 452 (452)
Q Consensus 374 ~~~~~~Kri~v~~eHik~sk~~~~fl~rvk~nd~~k~eak~~g~~v~~k~~p~~pr~~~~v~~~-~~~~~l~p~py~~~~ 452 (452)
+||||+||||||||||+||+||++||+||||||++++|||++|+||+|||||++||+||||+++ ++||+|+|+||||++
T Consensus 81 g~ki~~Kri~vr~EHlk~sk~r~~fl~Rvk~n~~~~~~ak~~g~~v~~Kr~p~~Pr~a~~v~~~~~~p~~~~p~py~~~~ 160 (160)
T PTZ00189 81 RGRIVRKRIHVRIEHVRKSRCREDFLKRVAANDAIKAEAKKKGELPSTKRQPAQPRPAGFVKPKPTEVVTVRPLPFVEIY 160 (160)
T ss_pred CCEEeeeEEecCHhHcCCcCCHHHHHHHHHHhHHHHHHHHHcCCccccccCCCCCCCceEEecCCCceeEecccceEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999976 899999999999974
No 8
>PLN00190 60S ribosomal protein L21; Provisional
Probab=100.00 E-value=4.5e-70 Score=495.40 Aligned_cols=157 Identities=54% Similarity=0.931 Sum_probs=154.5
Q ss_pred ccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeec
Q psy2355 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRV 373 (452)
Q Consensus 294 mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v 373 (452)
|.+|+|||++||+||||+||+||++||++||++|++||+|||++||||||||||+|||||||+|||||++||||+|||+|
T Consensus 1 M~~s~G~R~~TR~~fsk~~R~~G~~pls~~l~~yk~GD~VdIk~~~svqKGMPhk~YHGkTG~V~nv~~~A~gV~V~K~v 80 (158)
T PLN00190 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTKRAVGVEVNKQV 80 (158)
T ss_pred CCCCCCccccchhhhCccccccCCCcHHHHHHHhcCCCEEEEEecCCeecCCCcccccCCCeEEEeecCcEEEEEEEEee
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeeccccccCChHHHHHHHhHhHHHHHHHHHcCCccccCCCCCCCcCeeEeecCCcceeeccccceec
Q psy2355 374 RTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGRTAPVMLAPIPYEFI 451 (452)
Q Consensus 374 ~~~~~~Kri~v~~eHik~sk~~~~fl~rvk~nd~~k~eak~~g~~v~~k~~p~~pr~~~~v~~~~~~~~l~p~py~~~ 451 (452)
+|||++||||||||||+||+||++||+||||||++++|||++|+||+|||||++||+||||+ +.+||+|+|+||+|+
T Consensus 81 ggr~~~Kri~vriEHlk~sk~r~~Fl~Rvk~n~~~~~eak~~g~~v~lKrqp~~Pr~~~~v~-~~~p~~l~p~py~~~ 157 (158)
T PLN00190 81 GNRIIRKRIHVRVEHVQPSRCREEFLLRKKSNDEAKAEAKAKGEKISTKRQPKGPKPGFMVE-GATLETVTPIPYDVV 157 (158)
T ss_pred CCeEeeEEEEeCHHHccCccCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCCCCcceEec-CCCeeEecccceEec
Confidence 99999999999999999999999999999999999999999999999999999999999998 559999999999986
No 9
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2.1.1.45 from EC) [, ] catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5,10-methylenetetrahydrofolate to dihydrofolate: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP This provides the sole de novo pathway for production of dTMP and is the only enzyme in folate metabolism in which the 5,10-methylenetetrahydrofolate is oxidised during one-carbon transfer []. The enzyme is essential for regulating the balanced supply of the 4 DNA precursors in normal DNA replication: defects in the enzyme activity affecting the regulation process cause various biological and genetic abnormalities, such as thymineless death []. The enzyme is an important target for certain chemotherapeutic drugs. Thymidylate synthase is an enzyme of about 30 to 35 Kd in most species except in protozoan and plants where it exists as a bifunctional enzyme that includes a dihydrofolate reductase domain []. A cysteine residue is involved in the catalytic mechanism (it covalently binds the 5,6-dihydro-dUMP intermediate). The sequence around the active site of this enzyme is conserved from phages to vertebrates.; GO: 0004799 thymidylate synthase activity, 0006231 dTMP biosynthetic process; PDB: 2AAZ_O 3DL5_D 2OIP_B 3DL6_E 3HJ3_C 1TSN_A 1TDU_B 3B5B_A 1KZJ_E 3B9H_A ....
Probab=100.00 E-value=5e-64 Score=495.43 Aligned_cols=244 Identities=46% Similarity=0.821 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCCcc
Q psy2355 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKI 153 (452)
Q Consensus 74 e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~~i 153 (452)
|++|+++|++||++|+++.+|||++|+++||++++||++++ ||++|+|+++|+++++|++|||+||+|+++|.+++++|
T Consensus 1 ~~~Y~~l~~~Il~~G~~~~~rtg~~t~~~~~~~~~~d~~~~-~p~lt~k~~~~~~~~~EllW~l~Gs~d~~~l~~~~~~i 79 (269)
T PF00303_consen 1 EKQYLDLLKKILENGEFREDRTGVGTKELFGVQLRIDPRKR-FPLLTTKKVNWKSAIAELLWYLSGSNDVDFLREYGPKI 79 (269)
T ss_dssp HHHHHHHHHHHHHHTEEEESTTSSEEEEEEEEEEEEECGGS--SSSSSST-HHHHHHHHHHHHHTT-SBHHHHHTTT-HT
T ss_pred ChHHHHHHHHHHHcCCCccCCCCCcEEEECcceEEEcCCCC-CccccccccccchhHHHHHHHHHcCccHHHHHhhcccc
Confidence 68999999999999999999999999999999999999888 99999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCCCCC
Q psy2355 154 WDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMP 233 (452)
Q Consensus 154 Wd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~dl~ 233 (452)
|+.|+++.| ++|++|++||.|||+|++.+ +| +.++|||++||++|++||+|||+++++|||.+++
T Consensus 80 wd~~~~~~~---------~~g~~g~~YG~~~r~~~~~~-----~~-~~~~dQl~~vi~~Lk~~p~sRR~vi~~w~p~~~~ 144 (269)
T PF00303_consen 80 WDFWADKDY---------EEGDLGPAYGPRWRHWGAPY-----DY-GFGFDQLEWVIEKLKNNPDSRRAVISIWNPSDDD 144 (269)
T ss_dssp THGGHSHHH---------HTTB-SSSHHHHHHHBTSTE-----TT-TSSBEHHHHHHHHHHHSTTSSTEEEEC--TTTGG
T ss_pred ccccccccc---------ccCcccCCCCceeeeccccc-----cC-CccHHHHHHHHHHHhcCCCchhheeeeCCHhHhc
Confidence 999865443 46999999999999998653 35 6789999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---ccccc
Q psy2355 234 KMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GTRDL 307 (452)
Q Consensus 234 ~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~TR~m 307 (452)
+++|+|||..+||+|++|+|+|+++|||||+++|+|+|+++|++||++||+.||+++|+|+|++.+ |.+ ..+.+
T Consensus 145 ~~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~~~ 224 (269)
T PF00303_consen 145 EMADPPCHQSIQFYVRDGKLNLTVYQRSNDAFLGLPFNIFQYALLQEMIARELGLKPGTYTHFIGSAHIYENHIDAAKEQ 224 (269)
T ss_dssp GSSS--SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCCceeeeEEEEECCEEEEEEEeecchhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEcccEeeHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 766 66677
Q ss_pred ccCccccCCCCCcc---hhhhhccCCCEE
Q psy2355 308 FSRPFRRHGTIPLS---VYMKVYKVGDIV 333 (452)
Q Consensus 308 fsR~fR~~g~~pl~---~~~~~yk~Gd~V 333 (452)
+++.+.+.....+. +-+-.|+..|++
T Consensus 225 l~~~~~~~p~l~~~~~~~~~~~~~~~d~~ 253 (269)
T PF00303_consen 225 LKREPYPFPKLEINPEKKSIDDFKPEDFK 253 (269)
T ss_dssp HTS---S--EEEESSTHSSGGGH-GGGEE
T ss_pred HhcCCCCCCEEEeCCCCCChhhCchhhEE
Confidence 88877754433332 245567777776
No 10
>KOG1732|consensus
Probab=100.00 E-value=4.1e-64 Score=459.02 Aligned_cols=159 Identities=72% Similarity=1.181 Sum_probs=155.6
Q ss_pred ccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeec
Q psy2355 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRV 373 (452)
Q Consensus 294 mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v 373 (452)
|++++|+|++||+||+|+||+||++||++||++|++||+|||++++++||||||+|||||||+||+|+++|+||++||||
T Consensus 1 m~~~~g~~~~t~~~~~~~~~k~~~~~l~~y~~i~k~gdivdi~~~~~~~kg~p~k~y~gktgrvy~v~~~a~giv~nKqv 80 (160)
T KOG1732|consen 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGNGTVQKGMPHKCYHGKTGRVYNVTQHAVGVVVNKQV 80 (160)
T ss_pred CCcccCcccccceeecchhhhcCeeeeeeeeeeecccceeecccccchhcCCccccccccccceeeccceeEEEEEEEee
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeeccccccCChHHHHHHHhHhHHHHHHHHHcCCccccCCCCCCCcCeeEeecC-CcceeeccccceecC
Q psy2355 374 RTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGR-TAPVMLAPIPYEFIA 452 (452)
Q Consensus 374 ~~~~~~Kri~v~~eHik~sk~~~~fl~rvk~nd~~k~eak~~g~~v~~k~~p~~pr~~~~v~~~-~~~~~l~p~py~~~~ 452 (452)
+|||++|||||+||||+||+|+++||+|+|||||+++||||+|+|||+||||++|||||||+|+ +|||+|+||||||||
T Consensus 81 kgKil~KRinV~iEhik~sk~~~~fl~r~kendqkkkeAKekg~wvq~k~p~~~prea~~Vrt~gkepell~pip~~f~a 160 (160)
T KOG1732|consen 81 KGKILAKRINVRIEHIKHSKCRDEFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA 160 (160)
T ss_pred ccceeeeeeeeEeeccccccchhhhhhhhcccchhhhhHHhcCceeecccCCCCCcceeEEEcCCCCccccccccccccC
Confidence 9999999999999999999999999999999999999999999999977777789999999987 999999999999997
No 11
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa,
Probab=100.00 E-value=1.8e-61 Score=463.56 Aligned_cols=202 Identities=61% Similarity=1.061 Sum_probs=193.3
Q ss_pred HHHHHHHHHHhcCccc-CCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCCccc
Q psy2355 76 QYLHLLDKIIKTGHKK-SDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIW 154 (452)
Q Consensus 76 ~Yl~ll~~IL~~G~~~-~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~~iW 154 (452)
+|++++++||++|... .+|||++|+++||++++||++++ ||++|+||++|+++++|++||++|+||+++|.+++++||
T Consensus 1 ~y~~~~~~il~~g~~~~~~Rtg~~t~~~~g~~~~~~~~~~-~p~~t~k~~~~~~~i~Ellw~l~G~~~~~~l~~~~~~iw 79 (215)
T cd00351 1 QYLDLWRKILEEGYRKTDDRTGTGTRSLFGAQLRFDLSEG-FPLLTTKKVPWKSAIEELLWFLRGDTNAERLKEYGVSIW 79 (215)
T ss_pred CHHHHHHHHHHhCCeecCCCCCCceEEEeeeEEEEECccC-ccccccCCCCchhhhhhhhhhhcCCccHHHHHHhCcccc
Confidence 5999999999999998 89999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCCCCCC
Q psy2355 155 DPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPK 234 (452)
Q Consensus 155 d~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~dl~~ 234 (452)
|+|+ .++|++|++||.|||+|++. ++++|||++||++||+||+|||+++++|||.++.+
T Consensus 80 ~~~~------------~~~g~~g~~YG~r~r~~~~~---------~~~~dQi~~vi~~Lk~~p~sRR~ii~~w~p~~~~~ 138 (215)
T cd00351 80 DEWA------------SKEGDLGYTYGFQWRHWGAP---------GQGVDQIEKVIEKLKNNPDSRRAIISAWNPADLDL 138 (215)
T ss_pred cccc------------ccCCCCCCChhhheeecCCC---------CCChHHHHHHHHHHhcCCCchheEEEecChhhccc
Confidence 9984 24689999999999999742 46799999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc
Q psy2355 235 MALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG 299 (452)
Q Consensus 235 ~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG 299 (452)
|+|||||..+||+|++|+|+|++||||||+++|+|||+++|++||+|||+.+|+++|+|+|++.+
T Consensus 139 ~~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~~~N~~~~~~L~~~iA~~~g~~~G~~~~~~~~ 203 (215)
T cd00351 139 MALPPCHTLIQFYVRNGKLSLTLYQRSNDAFLGVPFNIASYALLTEMIARVTGLEPGEFIHTIGD 203 (215)
T ss_pred cCCCCceEEEEEEEeCCEEEEEEEehhhhhhhhhhhhHHHHHHHHHHHHHhcCCEeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 12
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....
Probab=100.00 E-value=3.4e-42 Score=293.24 Aligned_cols=99 Identities=68% Similarity=1.007 Sum_probs=80.2
Q ss_pred cccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeecc
Q psy2355 295 TNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVR 374 (452)
Q Consensus 295 HnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~ 374 (452)
++|+|||++||+||+|+||+||++||++||++|++||+|||++||||||||||+|||||||+|+||+++|+|++++++|+
T Consensus 1 ~~S~G~R~~TR~~fsk~~R~~G~~~ls~~l~~yk~GD~V~I~id~sv~kGmPh~~yHGkTG~V~~v~~~~~G~~~~~~v~ 80 (99)
T PF01157_consen 1 TRSKGYRRGTRYKFSKPFRKHGMIPLSTYLQEYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVFNVTKGARGVAYNKQVK 80 (99)
T ss_dssp -SS-STTTTTHHHHS--CCCTSS--CHHHH----TT-EEEE---TTSSSSS--GGGTTEEEEEEEE-SSCEEEEEEEECS
T ss_pred CCCCCccCCCchhhcCCCccCCCCcHHHHHHHccCCCEEEEEecCccccCCCcceECCCceeEEEeCCCceEEEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEeeccccccC
Q psy2355 375 TRIIPKRINVRIEHIKHSK 393 (452)
Q Consensus 375 ~~~~~Kri~v~~eHik~sk 393 (452)
+++++|+|+||+|||+|||
T Consensus 81 ~~~~~K~i~vr~eHlk~sK 99 (99)
T PF01157_consen 81 DRIKEKRIIVRPEHLKPSK 99 (99)
T ss_dssp SSCEEEEEEEEGGGEEE-S
T ss_pred CCcccEEEEECHHHcccCC
Confidence 9999999999999999997
No 13
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=100.00 E-value=5e-42 Score=291.18 Aligned_cols=98 Identities=37% Similarity=0.503 Sum_probs=93.6
Q ss_pred eccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEee
Q psy2355 293 NMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKR 372 (452)
Q Consensus 293 ~mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~ 372 (452)
.|.+|+|||++||++|||+||+||++||++||++|++||+|||++||||||||||+|||||||+||||+++||||+| +
T Consensus 1 mM~~s~G~R~~TR~~fsk~~R~~G~~~ls~~l~~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~~A~~V~v--~ 78 (98)
T PRK04306 1 MMKKSHGFRSKTRKKLSKSPRERGLSPLSRALQEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRGRAYIVEV--K 78 (98)
T ss_pred CCCCCCCccccchhhhCcCccccCCCcHHHHHHhccCCCEEEEEecCceecCCccccccCCCEEEEeecCeEEEEEE--E
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred ccccccceEEEEeeccccccCC
Q psy2355 373 VRTRIIPKRINVRIEHIKHSKC 394 (452)
Q Consensus 373 v~~~~~~Kri~v~~eHik~sk~ 394 (452)
++|| +||||||||||++|+.
T Consensus 79 vg~k--~Kri~vr~eHlk~~~~ 98 (98)
T PRK04306 79 DGGK--EKTLIVRPEHLRPQKG 98 (98)
T ss_pred ECCc--eeEEEcCHHHcCccCC
Confidence 5566 9999999999999974
No 14
>PRK00956 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=3.2e-40 Score=315.45 Aligned_cols=185 Identities=24% Similarity=0.340 Sum_probs=155.3
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
....+++|..++++|+++|+...+..|..|+++.+..+..+.+..+ .++-+
T Consensus 7 ~~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P~~~-------~i~~~---------------------- 57 (208)
T PRK00956 7 KKSVASAWERLVPKIMNEGEEITDERGSKTKEIMNTIIEITNPKLK-------SIPEK---------------------- 57 (208)
T ss_pred cCCHHHHHHHHHHHHHhCCcEeeCCCCceEEEEeceEEEEcCCccC-------CCCCC----------------------
Confidence 3578999999999999999999888899899999999988532221 11111
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
.-|++|..++|.+++ + +.+..+++++||.|||+|++ ..|||++||++|++||+|||+|+++|||
T Consensus 58 --~~~~~~~~~~y~~~~-~-~g~~~~~~~~YG~r~r~~~~------------~~dQi~~vI~~L~~~p~sRR~i~~~w~p 121 (208)
T PRK00956 58 --YPLGEEALEEYTKQL-L-SGSAQGFVYTYGERLREYPG------------EVDQIDYIIEKLKENKNSRRATAVTWNP 121 (208)
T ss_pred --CCcchHHHHHHHHhc-c-CCccCccCCCHHHHHhcCCC------------hhHHHHHHHHHHhcCCCchheEEEEeCc
Confidence 124444444444332 1 12345699999999999953 2599999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc
Q psy2355 230 IDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG 299 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG 299 (452)
.++.++++||||..+||.|+||+|+|+++|||||+++|+|||+++|++||++||+.+|+++|+|+|++.+
T Consensus 122 ~~d~~~~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~ 191 (208)
T PRK00956 122 YIDTKVDEVPCLQLVDFLIRDGKLYLTVLFRSNDAGGAFHANAIGLIKLGEYVAEKVGVELGTYTHHSVS 191 (208)
T ss_pred hhhhhcCCCCCeEEEEEEEeCCEEEEEEEEhhhhhhcccchHHHHHHHHHHHHHHHhCCcceEEEEEEEE
Confidence 9998999999999999999999999999999999999999999999999999999999999999999865
No 15
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase.
Probab=100.00 E-value=4.5e-40 Score=312.55 Aligned_cols=184 Identities=25% Similarity=0.350 Sum_probs=152.3
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
....+++|..++++|+++|....+..|..|+++.+..++++.+..+ |+.. ..+|+ .+.|.++
T Consensus 5 ~~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P~~~-~~~~--~~~~~---------------~~~l~~Y 66 (199)
T TIGR03283 5 KRSIAQAWRELVTKIMVEGEVVEDERGSLTKEVRNLIIHIENPGPE-KIPE--GYPLD---------------EEKLEEY 66 (199)
T ss_pred cCCHHHHHHHHHHHHHhCCeEeeCCCCceEEEEeceEEEEcCCccc-CcCc--cCccc---------------HHHHHHH
Confidence 3577999999999999999999888899999999999999533221 2111 11221 1222221
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
.++++ +.++..++++||.|||+|. ++|||++||++|++||+|||+|+++|||
T Consensus 67 ---------~~~ll------~~~~~~~~y~YG~r~r~~~-------------g~dQl~~vI~~Lk~~p~sRR~i~~~w~p 118 (199)
T TIGR03283 67 ---------EKQLL------DPERQGFVYTYGNRLRRYF-------------GIDQIDYIIERLNQSPNSRRAIAITWDP 118 (199)
T ss_pred ---------HHHHc------CCCcCCCCcCHHHHHHcCC-------------ChhHHHHHHHHHhcCCCccceeEEEECc
Confidence 12222 1233448999999999983 5899999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc
Q psy2355 230 IDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG 299 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG 299 (452)
.++.++++||||..+||.|+||+|+|+++|||||+++|+|||+++|++||+|||+.+|+++|+|+|++.+
T Consensus 119 ~~d~~~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~ 188 (199)
T TIGR03283 119 PQDIKVDEVPCLQLVQFLIRDNKLYLTAFFRSNDVGGAWVANAIGLRRLQEYVAEKVGVEPGTLTTHAIS 188 (199)
T ss_pred chhcccCCCCCcEEEEEEEeCCEEEEEEEEhhhhhhchhhhHHHHHHHHHHHHHHHhCCcceEEEEEEEE
Confidence 9888899999999999999999999999999999999999999999999999999999999999999864
No 16
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-36 Score=254.81 Aligned_cols=97 Identities=44% Similarity=0.646 Sum_probs=93.8
Q ss_pred ccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccc
Q psy2355 296 NSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRT 375 (452)
Q Consensus 296 nSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~ 375 (452)
+|+|||++||++|++++|++|.+||++||++|++||+|+|++||||||||||++|||+||+|++++++||+|+|+.+.+
T Consensus 2 ~S~G~R~~TR~kl~k~~RerG~~plsr~l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~k- 80 (98)
T COG2139 2 RSHGYRSRTRYKLQKDPRERGLSPLSRYLQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGNK- 80 (98)
T ss_pred CCccccccchhhhccCccccCCcchhhHHhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCCc-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999997666
Q ss_pred cccceEEEEeeccccccCChH
Q psy2355 376 RIIPKRINVRIEHIKHSKCRE 396 (452)
Q Consensus 376 ~~~~Kri~v~~eHik~sk~~~ 396 (452)
.|+|+|+|||||+++|++
T Consensus 81 ---~K~liv~peHLk~~~~~~ 98 (98)
T COG2139 81 ---EKTLIVRPEHLKPQKCRE 98 (98)
T ss_pred ---eEEEEeCHHHccccccCC
Confidence 999999999999999963
No 17
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=65.05 E-value=9.2 Score=31.64 Aligned_cols=48 Identities=31% Similarity=0.497 Sum_probs=35.0
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccccccC
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSK 393 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~sk 393 (452)
..++||.|-|..-. +-||+|+|..|-.. +++++.+-+|+.--|+|+..
T Consensus 6 ~I~kGD~V~Vi~G~----------dKGK~G~V~~V~~~----------~~~V~Vegvn~~kkh~kp~~ 53 (76)
T PRK12281 6 KVKKGDMVKVIAGD----------DKGKTGKVLAVLPK----------KNRVIVEGVKIAKKAIKPSQ 53 (76)
T ss_pred cccCCCEEEEeEcC----------CCCcEEEEEEEEcC----------CCEEEEcCcEEEEEEcCCCc
Confidence 56899999875422 66999999887554 34555666888888988864
No 18
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle. This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.
Probab=63.46 E-value=9.1 Score=33.47 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=35.7
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccccccCC
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKC 394 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~sk~ 394 (452)
.+++||.|-|.--. +-||+|.|..|-.. +++++.+-+|++-.|++++..
T Consensus 3 ~ikkGD~V~Vi~G~----------dKGK~G~V~~V~~~----------~~~V~VegvN~~kkh~k~~~~ 51 (104)
T TIGR01079 3 KIKKGDTVKVISGK----------DKGKRGKVLKVLPK----------TNKVIVEGVNMVKKHVKPKPT 51 (104)
T ss_pred cccCCCEEEEeEcC----------CCCcEEEEEEEEcC----------CCEEEECCcEEEEEecCcccC
Confidence 46899999775322 66999999987654 344555668889999998664
No 19
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=58.76 E-value=13 Score=31.21 Aligned_cols=48 Identities=35% Similarity=0.609 Sum_probs=34.5
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccccccC
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSK 393 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~sk 393 (452)
..++||.|-|..-+ +.||+|.|..|.... ++++..-+|+.--|++++.
T Consensus 8 ~I~~GD~V~Vi~G~----------dKGK~G~V~~V~~~~----------~~V~Vegvn~~~k~~k~~~ 55 (83)
T CHL00141 8 HVKIGDTVKIISGS----------DKGKIGEVLKIIKKS----------NKVIVKGINIKFKHIKPNK 55 (83)
T ss_pred cccCCCEEEEeEcC----------CCCcEEEEEEEEcCC----------CEEEEcCcEEEEEEcCCcc
Confidence 56799999875422 679999998876543 4445556788888888764
No 20
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=57.46 E-value=30 Score=32.13 Aligned_cols=65 Identities=26% Similarity=0.299 Sum_probs=39.6
Q ss_pred ccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceE----E---EEeeccccccCChHHHH
Q psy2355 327 YKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKR----I---NVRIEHIKHSKCREDFL 399 (452)
Q Consensus 327 yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kr----i---~v~~eHik~sk~~~~fl 399 (452)
.++||.|-|..-. |-|++|.|..|-....-|+|..-..-+.-.|. | ||-+-.+.-++.|..+|
T Consensus 47 IkkGD~V~Vi~Gk----------~KGk~GkV~~V~~k~~~ViVEgvn~~Kk~gk~~e~PIh~SNV~iv~l~l~~~R~~~l 116 (143)
T PTZ00194 47 VRKDDEVMVVRGH----------HKGREGKVTAVYRKKWVIHIEKITREKANGEPVQIGIHPSNVIITKLKLNKDRKAIL 116 (143)
T ss_pred eecCCEEEEecCC----------CCCCceEEEEEEcCCCEEEEeCeEEEecCCCEeecCcCchheEEEccccCchHHHHH
Confidence 6899999775332 56999999999766554555221111111111 1 55555666677788888
Q ss_pred HH
Q psy2355 400 KR 401 (452)
Q Consensus 400 ~r 401 (452)
++
T Consensus 117 ~~ 118 (143)
T PTZ00194 117 ER 118 (143)
T ss_pred hh
Confidence 77
No 21
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=54.64 E-value=16 Score=31.89 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=34.4
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccccccC
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSK 393 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~sk 393 (452)
.+++||.|-|.--. +-||+|.|..|....-.| +.+-||++-.|++++.
T Consensus 4 ~i~kGD~V~Vi~G~----------dKGk~G~V~~V~~~~~~V----------~Vegvn~~k~h~k~~~ 51 (105)
T PRK00004 4 KIKKGDTVIVIAGK----------DKGKRGKVLKVLPKKNKV----------IVEGVNIVKKHQKPNQ 51 (105)
T ss_pred cccCCCEEEEeEcC----------CCCcEEEEEEEEcCCCEE----------EEcCcEEEEEecCCCC
Confidence 46899999774321 569999999887654444 4455788888888765
No 22
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=50.10 E-value=20 Score=22.82 Aligned_cols=26 Identities=35% Similarity=0.712 Sum_probs=19.2
Q ss_pred ccCCCEEEEeccCccccCcccccccCCCceeeeeec
Q psy2355 327 YKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQ 362 (452)
Q Consensus 327 yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~ 362 (452)
+++||.|-|..-+ |.|++|.|..+.+
T Consensus 2 ~~~G~~V~I~~G~----------~~g~~g~i~~i~~ 27 (28)
T smart00739 2 FEVGDTVRVIAGP----------FKGKVGKVLEVDG 27 (28)
T ss_pred CCCCCEEEEeECC----------CCCcEEEEEEEcC
Confidence 5789999997644 5677888877653
No 23
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=33.34 E-value=60 Score=25.73 Aligned_cols=34 Identities=44% Similarity=0.508 Sum_probs=27.2
Q ss_pred hhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEe
Q psy2355 324 MKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNK 371 (452)
Q Consensus 324 ~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk 371 (452)
|.+-++||++.++ +|-||+|..|..++|.|.+..
T Consensus 1 ~~~a~vGdiIefk--------------~g~~G~V~kv~eNSVIVdIT~ 34 (57)
T PF09953_consen 1 MKKAKVGDIIEFK--------------DGFTGIVEKVYENSVIVDITI 34 (57)
T ss_pred CcccccCcEEEEc--------------CCcEEEEEEEecCcEEEEEEe
Confidence 4556789999762 257999999999999998865
No 24
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
Probab=33.19 E-value=79 Score=27.90 Aligned_cols=47 Identities=36% Similarity=0.481 Sum_probs=34.0
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccccccCC
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKC 394 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~sk~ 394 (452)
-.++||.|-+..-. +-|++|.|..|...- |+| .-+|+.-.|.+++..
T Consensus 4 ~IrkGD~V~Vi~Gk----------dKGk~GkVl~v~~k~--V~V----------EGvnv~kkh~k~~~~ 50 (104)
T COG0198 4 KVKKGDTVKVIAGK----------DKGKEGKVLKVLPKK--VVV----------EGVNVVKKHIKPSQE 50 (104)
T ss_pred ceecCCEEEEEecC----------CCCcceEEEEEecCe--EEE----------ECcEEEEecCCCCCc
Confidence 45799999775332 679999999998876 444 446777788885544
No 25
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=32.01 E-value=36 Score=33.64 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=17.9
Q ss_pred hhccCCCEEEEeccCc-cccCcccccccCCCceeeeee
Q psy2355 325 KVYKVGDIVDIKGHGA-VQKGMPFKDYHGKTGRVFNVT 361 (452)
Q Consensus 325 ~~yk~Gd~VdIk~~~~-v~kGmPhk~yhGktG~V~~v~ 361 (452)
-.|++||.|-++-++. -|--+| .+=.||||+|.-+.
T Consensus 133 ~~F~vGd~Vrv~~~~~~~HtR~P-~Y~rg~~G~I~~~~ 169 (222)
T PF02211_consen 133 PRFAVGDRVRVRNLPPPGHTRLP-RYVRGKTGTIERVH 169 (222)
T ss_dssp -SS-TT-EEEE-----SS--SS--GGGTT-EEEEEEEE
T ss_pred CCCCCCCEEEECCCCCCCccccc-HhhCCCeeEEEEEe
Confidence 3589999999886554 344455 56689999888443
No 26
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=30.92 E-value=53 Score=31.16 Aligned_cols=42 Identities=31% Similarity=0.712 Sum_probs=28.9
Q ss_pred cccCCCC-CcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeecc
Q psy2355 312 FRRHGTI-PLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVR 374 (452)
Q Consensus 312 fR~~g~~-pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~ 374 (452)
|+.+|.. |++.--..|+.||||.-...+ |.|| +|||..+..+
T Consensus 91 F~R~g~~L~~~~~~~~~q~GDIVtw~l~~----~~~H-----------------IgIVSd~r~~ 133 (164)
T PF06940_consen 91 FKRHGQSLTTDINPEDWQPGDIVTWRLPG----GLPH-----------------IGIVSDRRSK 133 (164)
T ss_pred HHhcCeeccCCCChhhcCCCCEEEEeCCC----CCCe-----------------EEEEeCCcCC
Confidence 4556643 444333789999999987655 6888 6777776655
No 27
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=29.49 E-value=60 Score=29.01 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=23.5
Q ss_pred ccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEE
Q psy2355 327 YKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIV 369 (452)
Q Consensus 327 yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~v 369 (452)
.++||.|-|..-. |.|++|.|..|...-.-|+|
T Consensus 42 IkkGD~V~Vi~Gk----------~KGk~GkV~~V~~~~~~V~V 74 (114)
T TIGR01080 42 VRKGDKVRIMRGD----------FKGHEGKVSKVDLKRYRIYV 74 (114)
T ss_pred eecCCEEEEecCC----------CCCCEEEEEEEEcCCCEEEE
Confidence 5789999875433 67999999988654444444
No 28
>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]
Probab=27.89 E-value=48 Score=28.79 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=34.1
Q ss_pred CCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEE
Q psy2355 329 VGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINV 384 (452)
Q Consensus 329 ~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v 384 (452)
.|=.|-|.. -+|+.|-|-.|+|+.=|++.+.|.--. +-++++|++.+
T Consensus 16 iGl~vrVv~-------s~~~s~vGI~G~VVdETkNtLvi~t~~--~~~~VpK~~~v 62 (95)
T COG1588 16 IGLEVRVVR-------STNPSYVGIEGRVVDETKNTLVIDTGS--REKVVPKDGAV 62 (95)
T ss_pred cCcEEEEEe-------cCCCCccceeEEEEeeeccEEEEECCC--ceEEEecCcEE
Confidence 455565543 368999999999999999998766543 44567776654
No 29
>PF12407 Abdominal-A: Homeobox protein ; InterPro: IPR022132 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00046 from PFAM. This family is a homeobox protein involved in differentiation of embryonic cells to form the abdominal region.
Probab=27.00 E-value=55 Score=21.39 Aligned_cols=17 Identities=47% Similarity=0.659 Sum_probs=12.5
Q ss_pred HHHhH-hHHHHHHHHHcC
Q psy2355 400 KRVKE-NELKRKEAKEKG 416 (452)
Q Consensus 400 ~rvk~-nd~~k~eak~~g 416 (452)
.-||| |+|.+.|++|+.
T Consensus 3 ravkeineqar~e~~Eqe 20 (24)
T PF12407_consen 3 RAVKEINEQARREREEQE 20 (24)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 34564 789999998864
No 30
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=24.04 E-value=1.5e+02 Score=26.46 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=52.7
Q ss_pred EeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccccccccccccc-CccccCCCCCcchhhhh
Q psy2355 248 VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFS-RPFRRHGTIPLSVYMKV 326 (452)
Q Consensus 248 VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkGYRr~TR~mfs-R~fR~~g~~pl~~~~~~ 326 (452)
+.++.+.+...-+.++.|..-++.++--+++.|++||.+++-.|.... ..+.....-++.+ |.++ +.+.
T Consensus 22 ~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~-~~~~~~~~g~l~~i~~~~---------f~~~ 91 (138)
T cd01289 22 WDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLAR-QQGNPPRPGFLLGSRKYE---------AHVD 91 (138)
T ss_pred EcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHH-hcCCCCCcEEEEEEEEEE---------EEcc
Confidence 346788888877888888776666788889999999998776553211 1111111222221 2222 1222
Q ss_pred -ccCCCEEEEeccCccccC
Q psy2355 327 -YKVGDIVDIKGHGAVQKG 344 (452)
Q Consensus 327 -yk~Gd~VdIk~~~~v~kG 344 (452)
+..||.+.|...-..+++
T Consensus 92 v~p~Gd~l~i~~~~~~~~~ 110 (138)
T cd01289 92 RFDLGSTLLIVVAELLQGD 110 (138)
T ss_pred eeCCCCeeEEEeeeeeeCC
Confidence 345999999887766663
No 31
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=22.97 E-value=95 Score=28.06 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=23.6
Q ss_pred ccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEE
Q psy2355 327 YKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIV 369 (452)
Q Consensus 327 yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~v 369 (452)
.++||.|-|..-. +-|++|+|..|-..---|+|
T Consensus 46 IkkGD~V~VisG~----------~KGk~GkV~~V~~~~~~V~V 78 (120)
T PRK01191 46 VRKGDTVKVMRGD----------FKGEEGKVVEVDLKRGRIYV 78 (120)
T ss_pred EeCCCEEEEeecC----------CCCceEEEEEEEcCCCEEEE
Confidence 5899999886544 56899999988654433444
No 32
>KOG4101|consensus
Probab=22.03 E-value=1.1e+02 Score=28.72 Aligned_cols=58 Identities=28% Similarity=0.525 Sum_probs=42.9
Q ss_pred CCceeEEecceeEEEeCCCCCcccccccccc---hHHHHHHHHHHHhCC--CChhhhh--------hcCCcccc
Q psy2355 95 TGVGTLSLFGAQMRFDLTNGTFPLLTTKRVF---WKGVVEELLWFIKGS--TNAKELS--------DKGVKIWD 155 (452)
Q Consensus 95 TG~gT~sifg~~~rfDl~~g~fPllTtKkv~---~k~~i~ELLWfL~Gs--tdv~~L~--------~~g~~iWd 155 (452)
.|+|-+.+||..-||+- +||---|-+++ +|.-++-.--.|+-. .|+++|. -.||.+|-
T Consensus 43 RG~GniTVFGlsnrFnt---EfP~~Ltg~vAPEEfkati~RvNsvLKk~lpvnvrWLlCGc~cCCCtlGCSmWP 113 (175)
T KOG4101|consen 43 RGAGNITVFGLSNRFNT---EFPSELTGKVAPEEFKATIGRVNSVLKKHLPVNVRWLLCGCLCCCCTLGCSMWP 113 (175)
T ss_pred eccCceEEEeccccccc---cCChhhccccCHHHHHHHHHHHHHHHHhcCCchhHHHHhhHHHHhhccCccccc
Confidence 48889999999999984 37765555665 666676666666654 6778876 37999986
No 33
>PF09629 YorP: YorP protein; InterPro: IPR018591 This entry is represented by Bacteriophage SP-beta, YorP. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. YorP is a 71 residue protein. The structure is of an alpha helix between two of five beta strands. The function is unknown. ; PDB: 2HEQ_A.
Probab=21.60 E-value=87 Score=25.28 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=17.9
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeee
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFN 359 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~ 359 (452)
.|..||.|.|.-+ -.-|||| +-|+-|.|..
T Consensus 6 sY~~~~~VeIN~N--Akyg~P~--~VG~kG~IIe 35 (71)
T PF09629_consen 6 SYPLGLEVEINSN--AKYGCPH--HVGRKGKIIE 35 (71)
T ss_dssp -S-TT-EEEE-TT---TTTSTT----SSEEEEEE
T ss_pred ccCCCCEEEEcCc--ccccCcc--ccccccchhh
Confidence 5789999998554 4789999 5677776554
Done!