Query psy2355
Match_columns 452
No_of_seqs 347 out of 1389
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:52:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ed7_A Tsase, TS, thymidylate 100.0 1.7E-85 5.7E-90 650.1 20.5 265 70-335 8-281 (295)
2 3kgb_A Thymidylate synthase 1/ 100.0 1.2E-84 4.1E-89 644.2 17.6 266 69-335 4-280 (294)
3 2aaz_A TS, tsase, thymidylate 100.0 8.3E-83 2.8E-87 637.2 20.7 265 71-335 17-303 (317)
4 1f28_A Thymidylate synthase; b 100.0 7.8E-83 2.7E-87 633.4 19.1 265 71-335 3-283 (297)
5 1j3k_C Bifunctional dihydrofol 100.0 2E-82 6.7E-87 635.9 18.2 264 71-335 42-314 (328)
6 1hw4_A TS, thymidylate synthas 100.0 5.9E-82 2E-86 636.3 17.6 265 70-335 68-341 (355)
7 4dq1_A TS, tsase, thymidylate 100.0 1.5E-81 5E-86 627.0 17.0 256 71-335 6-307 (321)
8 3irm_A Bifunctional dihydrofol 100.0 3.2E-80 1.1E-84 654.3 18.2 266 70-335 233-507 (521)
9 3nrr_A Dihydrofolate reductase 100.0 9.4E-80 3.2E-84 650.0 20.1 265 70-335 228-501 (515)
10 3hj3_A Chain A, crystal struct 100.0 9.9E-80 3.4E-84 650.6 19.1 265 70-335 233-507 (521)
11 3v8h_A TS, tsase, thymidylate 100.0 3E-80 1E-84 619.9 12.9 241 72-316 3-280 (327)
12 3uwl_A TS, tsase, thymidylate 100.0 1.2E-79 4E-84 615.8 15.5 252 74-334 2-300 (315)
13 3qj7_A TS, tsase, thymidylate 100.0 6.8E-79 2.3E-83 595.8 14.1 241 74-335 2-250 (264)
14 3qg2_A Bifunctional dihydrofol 100.0 6E-78 2.1E-82 643.0 21.9 265 70-335 321-594 (608)
15 1tis_A Thymidylate synthase; t 100.0 1.2E-76 4E-81 586.1 15.9 229 74-320 1-242 (286)
16 4a17_P RPL21, 60S ribosomal pr 100.0 9.7E-77 3.3E-81 538.3 12.9 156 294-451 1-156 (157)
17 3izc_U 60S ribosomal protein R 100.0 1.4E-77 4.7E-82 545.3 6.9 158 294-451 1-159 (160)
18 3iz5_U 60S ribosomal protein L 100.0 6.3E-78 2.2E-82 548.9 3.3 158 294-452 1-158 (164)
19 2g8o_A TS, tsase, thymidylate 100.0 3.9E-76 1.3E-80 577.9 14.7 241 74-335 1-250 (264)
20 3ix6_A TS, tsase, thymidylate 100.0 5.9E-76 2E-80 597.1 13.6 244 71-335 94-346 (360)
21 1bkp_A Thymidylate synthase A; 100.0 1E-74 3.6E-79 570.9 16.2 243 72-335 2-264 (278)
22 2zkr_q 60S ribosomal protein L 100.0 2E-75 6.7E-80 531.2 6.6 159 294-452 1-160 (160)
23 1b5e_A Protein (deoxycytidylat 100.0 1.9E-64 6.6E-69 491.3 13.0 212 70-313 5-234 (246)
24 3jyw_Q 60S ribosomal protein L 100.0 1.4E-52 4.8E-57 362.8 4.0 106 295-400 1-106 (116)
25 3j21_R 50S ribosomal protein L 100.0 9.4E-47 3.2E-51 318.5 8.6 97 293-393 1-97 (97)
26 1vq8_Q 50S ribosomal protein L 100.0 2.2E-46 7.7E-51 315.5 8.5 96 294-393 1-96 (96)
27 2do3_A Transcription elongatio 62.0 9.7 0.00033 30.0 4.4 58 319-392 10-67 (69)
28 2zzd_A Thiocyanate hydrolase s 49.8 12 0.00043 32.6 3.5 35 326-361 36-71 (126)
29 2zjr_R 50S ribosomal protein L 49.2 7.3 0.00025 33.4 2.0 48 326-393 15-62 (115)
30 3v2d_Y 50S ribosomal protein L 47.5 9.3 0.00032 32.6 2.3 49 326-394 6-54 (110)
31 3iz5_Y 60S ribosomal protein L 44.7 23 0.00079 31.8 4.5 78 326-416 48-132 (150)
32 3bbo_W Ribosomal protein L24; 42.1 9.4 0.00032 35.6 1.6 47 326-392 68-114 (191)
33 3qyh_B CO-type nitrIle hydrata 41.3 18 0.00063 34.3 3.5 35 326-361 130-165 (219)
34 1ugp_B NitrIle hydratase beta 40.0 20 0.00067 34.2 3.5 35 326-361 138-173 (226)
35 3hht_B NitrIle hydratase beta 39.2 21 0.0007 34.2 3.5 35 326-361 141-176 (229)
36 3r8s_U 50S ribosomal protein L 38.4 17 0.00057 30.6 2.5 49 325-394 2-50 (102)
37 2ftc_N Mitochondrial ribosomal 31.3 38 0.0013 28.1 3.5 34 350-393 11-44 (96)
38 3a8g_B NitrIle hydratase subun 28.3 37 0.0013 32.0 3.3 32 325-357 121-153 (212)
39 4fm4_B NitrIle hydratase beta 25.2 59 0.002 30.5 4.1 36 326-362 118-154 (206)
40 2e6z_A Transcription elongatio 22.3 1.1E+02 0.0039 22.6 4.5 51 325-389 6-56 (59)
41 2heq_A YORP protein; SH3-like, 21.7 57 0.002 25.9 2.7 38 319-361 5-42 (84)
No 1
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=100.00 E-value=1.7e-85 Score=650.13 Aligned_cols=265 Identities=62% Similarity=1.064 Sum_probs=242.1
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
.++.|+||++||++||++|+.++||||+||+|+||+||||||++| ||+|||||++||++++||||||+|+||+++|+++
T Consensus 8 ~~~~~~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~~-fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~ 86 (295)
T 3ed7_A 8 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDE-FPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSK 86 (295)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSC-CCCCTTTTCCHHHHHHHHHHHHTTCCBGGGGCC-
T ss_pred CCChHHHHHHHHHHHHHcCcCCCCCCCCceEEEcCceEEEecccC-cceeecccccHHHHHHHHHHHHhCCccHHHHHHc
Confidence 579999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
|++|||+|++++|+++.|++.+++|||||+||+|||+|++.|.+|.++|+|+++|||++||++||+||+|||+|+++|||
T Consensus 87 gv~IWd~~~~~~~~~~~g~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp 166 (295)
T 3ed7_A 87 GVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNP 166 (295)
T ss_dssp ----CCSCSSCCGGGGSCHHHHHTTBCCSCTHHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCG
T ss_pred CCcccccchhhhhhhcccCCccCCCcCccchhhhhhccCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecCH
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---c
Q psy2355 230 IDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---G 303 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~ 303 (452)
+|+++|+|||||+++||+|++|+|+|++||||+|+++|+||||++||+|++|||++||+++|+|+|++.+ |.+ .
T Consensus 167 ~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nH~e~ 246 (295)
T 3ed7_A 167 RDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEP 246 (295)
T ss_dssp GGTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHH
T ss_pred hHhhcCCCCCceEEEEEEEeCCEEEEEEEeehhhhHHhhhhhHHHHHHHHHHHHHHhCCeeeEEEEEEEEEEecHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 765 6
Q ss_pred ccccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355 304 TRDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI 335 (452)
Q Consensus 304 TR~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI 335 (452)
.+.+++|.+|+....-|. +-+-.|+..|+.-+
T Consensus 247 ~~~qL~R~p~~~P~l~i~~~~~~i~df~~~Df~l~ 281 (295)
T 3ed7_A 247 LKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIE 281 (295)
T ss_dssp HHHHTTSCCCCCCEEEECSCCCSGGGCCGGGEEEE
T ss_pred HHHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEE
Confidence 777899998854322221 34455666776544
No 2
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=100.00 E-value=1.2e-84 Score=644.23 Aligned_cols=266 Identities=52% Similarity=0.954 Sum_probs=219.9
Q ss_pred CCCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhh
Q psy2355 69 SVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSD 148 (452)
Q Consensus 69 ~~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~ 148 (452)
..++.|+||++||++||++|+.++||||+||+|+||+||||||+++.||+|||||++||++++||||||+|+||+++|++
T Consensus 4 ~~~~~~~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~ 83 (294)
T 3kgb_A 4 DPRHPEHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEK 83 (294)
T ss_dssp ---CTHHHHHHHHHHHHHHCEEEC----CCEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCCTHHHHT
T ss_pred CCCchHHHHHHHHHHHHHhCcCcCCCCCCceEEeccceEEEecccCccceeeeccccHHHHHHHHHHHHhCCccHHHHHh
Confidence 34789999999999999999999999999999999999999999945999999999999999999999999999999999
Q ss_pred cCCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeC
Q psy2355 149 KGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWN 228 (452)
Q Consensus 149 ~g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~Wn 228 (452)
+||+|||+|++++|+++.|+ ++++|||||+||+|||+|++.|.+|+++|+|+++|||++||++||+||+|||+|+++||
T Consensus 84 ~gv~IWd~~~~~~~~~~~~~-~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWn 162 (294)
T 3kgb_A 84 KGVRIWEKNGAKQFLQSVGI-DREEGDLGPIYGFQWRHFGARYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWN 162 (294)
T ss_dssp TTCC----------------------CCCSCHHHHHHSBTCCCCCTTSCCTTSSBCHHHHHHHHHHHCTTCSCCEEECCC
T ss_pred cCCCccccchhhhhhhcccc-cccCCCCccccchhhhcCCCccccccccccccchhHHHHHHHHHhcCCCccceEEEecC
Confidence 99999999999999999998 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---
Q psy2355 229 PIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR--- 302 (452)
Q Consensus 229 P~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr--- 302 (452)
|+|+++|+|||||+++||+|++|+|+|++||||+|++||+||||++|++|++|||++||+++|+|+|++.+ |.+
T Consensus 163 p~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~f~h~~gdaHIY~nH~e 242 (294)
T 3kgb_A 163 PTDLGSMALPPCHVLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVD 242 (294)
T ss_dssp TTCHHHHHSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHH
T ss_pred hhHhcCCCCCCCCceEEEEEECCEEEEEEEehhhhhhHHhhccHHHHHHHHHHHHHHhCCeeEEEEEEEEeEEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864 765
Q ss_pred cccccccCccccCCCCCcc-----hhhhhccCCCEEEE
Q psy2355 303 GTRDLFSRPFRRHGTIPLS-----VYMKVYKVGDIVDI 335 (452)
Q Consensus 303 ~TR~mfsR~fR~~g~~pl~-----~~~~~yk~Gd~VdI 335 (452)
..+.+++|.+|+....-|. +-+-.|+..|+.-+
T Consensus 243 ~~~~qL~R~p~~~P~l~i~~~~~~~~i~df~~~Df~l~ 280 (294)
T 3kgb_A 243 SLRQQIQRPPRAFPKLFVSPKGPRTEPEHFQYEDFELV 280 (294)
T ss_dssp HHHHHTTSCCCCCCEEEECCSSCCCSGGGCCGGGEEEE
T ss_pred HHHHHhcCCCCCCCEEEECCcCCCCchhcCCHhHEEEe
Confidence 6778899999854322221 23445566666533
No 3
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=100.00 E-value=8.3e-83 Score=637.16 Aligned_cols=265 Identities=53% Similarity=0.951 Sum_probs=245.4
Q ss_pred CchHHHHHHHHHHHHhcCcccCCCCCceeEEecce-eEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 71 QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGA-QMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 71 ~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~-~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
+++|+||++||++||++|+.++||||+||+|+||+ +|||||++|+||+|||||++||++++||||||+|+||+++|+++
T Consensus 17 ~~~e~qYldl~~~Il~~G~~~~dRTGtgT~sifg~~q~rfdL~~g~fPllTtKkv~~ks~i~ELLWfl~G~tni~~L~~~ 96 (317)
T 2aaz_A 17 DHEEYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELLWFVSGCTDAKMLSSQ 96 (317)
T ss_dssp TCTHHHHHHHHHHHHHHCEEECCTTSSCEEEEESCCCEEEECCTTBCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHTT
T ss_pred CcHHHHHHHHHHHHHHcCCCccCCCCCceEeecCceeEEEecCCCcceecccCccchHhhHHHHHHHHhCCCcHHHHHhc
Confidence 67899999999999999999999999999999999 99999999899999999999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
|++|||+|++++|+++.|+.++++|||||+||+|||+|++.|.++..+|+|+++|||++||++||+||+|||+|+++|||
T Consensus 97 gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~dy~G~~iDQi~~vI~~Lk~nP~SRR~IvsaWnp 176 (317)
T 2aaz_A 97 GVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNP 176 (317)
T ss_dssp TCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred CCcccCcchhhhhhhccCcccccCCCcCcccchHhhcCCccccCcccccccccHHHHHHHHHHHhcCCCCceEEEEecCh
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEe---------CCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc-
Q psy2355 230 IDMPKMALPPCHCLAQFYVA---------DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG- 299 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~Vr---------dGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG- 299 (452)
+|+++|+|||||+++||+|+ +|+|+|++||||+|++||+||||++||+|++|||++||+++|+|+|++++
T Consensus 177 ~dl~~maLpPCh~~~QF~V~~~~~~~~~~~gkL~~~lyQRS~D~~LGvPfNiasyalL~~miA~~~gl~~G~f~h~~gda 256 (317)
T 2aaz_A 177 KDLPLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDA 256 (317)
T ss_dssp TTGGGSSSCCSEEEEEEEEECCCTTCTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred hHhhcCCCCCcceEEEEEEecccccCCCCCCeEEEEEEeehhhhhhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEeeee
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999864
Q ss_pred --ccc---cccccccCccccCCCCCcch------hhhhccCCCEEEE
Q psy2355 300 --YRR---GTRDLFSRPFRRHGTIPLSV------YMKVYKVGDIVDI 335 (452)
Q Consensus 300 --YRr---~TR~mfsR~fR~~g~~pl~~------~~~~yk~Gd~VdI 335 (452)
|.+ ..+.+++|.+++-...-|.. -+-.|+..|+..+
T Consensus 257 HIY~nH~e~v~~qL~R~p~~~P~l~i~~~~~~~~~i~d~~~eDf~l~ 303 (317)
T 2aaz_A 257 HVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVE 303 (317)
T ss_dssp EEEGGGHHHHHHHHTSCCCCCCEEEESSCHHHHCSTTCCCGGGEEEE
T ss_pred EeeHhHHHHHHHHHhcCCCCCCeEEECCccCCCCchhhCChhHEEEe
Confidence 766 66778999988543222221 2444566666543
No 4
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=100.00 E-value=7.8e-83 Score=633.37 Aligned_cols=265 Identities=56% Similarity=0.988 Sum_probs=247.0
Q ss_pred CchHHHHHHHHHHHHhcCcccCCCCCceeEEecce-eEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 71 QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGA-QMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 71 ~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~-~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
++.|+||++||++||++|+.++||||+||+|+||+ ||||||++|+||+|||||++||++++||||||+|+||+++|+++
T Consensus 3 ~~~e~qYldl~~~Il~~G~~~~dRTG~gT~s~fg~pq~rfdl~~g~fPllTtKkv~~ks~i~ELLWfl~G~tn~~~L~~~ 82 (297)
T 1f28_A 3 NAEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLREK 82 (297)
T ss_dssp CHHHHHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTT
T ss_pred CchHHHHHHHHHHHHHcCCCcCCCCCCceEeeeccceEEEecCCCcccccccCCccccccHHHHHHHHhCCCcHHHHHHc
Confidence 57899999999999999999999999999999999 99999999889999999999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
|++|||+|++++|+++.|+.++++|||||+||+|||+|++.|.++..+|+|+++|||++||++||+||+|||+|+++|||
T Consensus 83 gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~~y~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wnp 162 (297)
T 1f28_A 83 NIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNP 162 (297)
T ss_dssp TCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred CCCcCCccccHHHHhhcccccccCCcccccchhhhhcCCccccCcccccCCCCHHHHHHHHHHHhcCCCCceEEEEecCh
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEe------CCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---c
Q psy2355 230 IDMPKMALPPCHCLAQFYVA------DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---Y 300 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~Vr------dGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---Y 300 (452)
+|+++|+|||||+++||+|+ +|+|+|++||||+|++||+||||++||+|++|||++||+++|+|+|++++ |
T Consensus 163 ~dl~~malpPCh~~~QF~V~~~~~~~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY 242 (297)
T 1f28_A 163 ADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIY 242 (297)
T ss_dssp TTGGGSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred hHhhcCCCCCceeEEEEEEeccCCCCCCcEEEEEEhhhhhHHhhhhhhHHHHHHHHHHHHHHhCCeeEEEEEEeeeeEee
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999865 6
Q ss_pred cc---cccccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355 301 RR---GTRDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI 335 (452)
Q Consensus 301 Rr---~TR~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI 335 (452)
.+ ..+.+++|.+++-....|. +-+-.|+..|+.-+
T Consensus 243 ~nh~e~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~ 283 (297)
T 1f28_A 243 KDHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQ 283 (297)
T ss_dssp HHHHHHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEE
T ss_pred HhHHHHHHHHHhcCCCCCCEeeeCCCCCchhhCChhHEEEe
Confidence 65 6778899998865433332 33455667777544
No 5
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=100.00 E-value=2e-82 Score=635.92 Aligned_cols=264 Identities=52% Similarity=0.937 Sum_probs=245.4
Q ss_pred CchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcC
Q psy2355 71 QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKG 150 (452)
Q Consensus 71 ~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g 150 (452)
+++|+||++||++||++|+.+.||||+||+|+||+||||||++| ||++||||++||++++||||||+|+||+++|+++|
T Consensus 42 ~~~e~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~g-FPllTtKkv~~ks~i~ELLWfl~G~tni~~L~e~g 120 (328)
T 1j3k_C 42 YHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQY-FPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKN 120 (328)
T ss_dssp CSTHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTC-CCCCSSSCCCCHHHHHHHHHHHTTCCBHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEccccC-CcccccccccchhcHHHHHHHHhCCccHHHHHHcC
Confidence 47899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCC
Q psy2355 151 VKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPI 230 (452)
Q Consensus 151 ~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~ 230 (452)
|+|||+|++++|+++.|+.++++|||||+||+|||+|++.|.++..+|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 121 v~IWd~wa~~~~ld~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~Lk~nP~SRR~IvsaWnp~ 200 (328)
T 1j3k_C 121 VRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVK 200 (328)
T ss_dssp CCTTSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGG
T ss_pred CcccCccchhhhhhccccccccCCcccccCchHhhcCCcccccccccccccchHHHHHHHHHHhcCCCCceEEEEccCHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---cc
Q psy2355 231 DMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GT 304 (452)
Q Consensus 231 dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~T 304 (452)
|+++|+|||||+++||+|++|+|+|++||||+|++||+||||++||+|++|||++||+++|+|+|++++ |.+ ..
T Consensus 201 dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LG~PfNiasyalL~~miAq~~Gle~Gefih~igdaHIY~nhie~v 280 (328)
T 1j3k_C 201 DLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSL 280 (328)
T ss_dssp GGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred HhcCCCCCCceeEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 766 66
Q ss_pred cccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355 305 RDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI 335 (452)
Q Consensus 305 R~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI 335 (452)
+.+++|.++.-...-|. +-+-.|+..|+.-+
T Consensus 281 ~~qL~R~P~~~P~l~i~~~~~~i~df~~~Df~l~ 314 (328)
T 1j3k_C 281 KIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQ 314 (328)
T ss_dssp HHHTTSCCCCCCEEEECTTCCSGGGCCGGGEEEE
T ss_pred HHHhcCCCCCCCeeEeCCCCCchhhCCHhHEEEe
Confidence 77899998854322222 23455667776544
No 6
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=100.00 E-value=5.9e-82 Score=636.26 Aligned_cols=265 Identities=62% Similarity=1.064 Sum_probs=224.2
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
.+++|+||++||++||++|+.+.||||+||+|+||+||||||++| ||++||||++||++++||||||+|+||+++|+++
T Consensus 68 ~~~~e~qYldll~~IL~~G~~~~dRTGtgT~sifG~q~rfdL~~g-FPllTTKkv~~ksii~ELLWfl~Gstni~~L~e~ 146 (355)
T 1hw4_A 68 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDE-FPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSK 146 (355)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSC-CCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCCCCceecccceeEEEeCCcC-CcccccccccccccHHHHHHHHhCCCcHHHHHHc
Confidence 478899999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
|++|||+|++++|+++.|+.++++|||||+||+|||+|++.|.++..+|+|+++|||++||++||+||+|||+|+++|||
T Consensus 147 gv~IWd~w~~~~~l~~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~VI~~Lk~nP~SRR~IvsaWNp 226 (355)
T 1hw4_A 147 GVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNP 226 (355)
T ss_dssp TC----------------------CBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCG
T ss_pred CCcccCCcchHHHhhccCcccccCCcccCccchhhhcCcccccCCccccCCCChHHHHHHHHHHhcCCCCceEEEEccCh
Confidence 99999999999999999998889999999999999999998888888999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---c
Q psy2355 230 IDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---G 303 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~ 303 (452)
+|+++|+|||||+++||+|++|+|+|++||||+|++||+||||++||+|++|||++||+++|+|+|++++ |.+ .
T Consensus 227 ~dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LGvPfNIasyalLt~miAq~~Gle~GefvhtigdaHIY~nHie~ 306 (355)
T 1hw4_A 227 RDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEP 306 (355)
T ss_dssp GGTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHH
T ss_pred hhhhcCCCCCceeEEEEEEeCCEEEEEEEehhhhhhhhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEEEeEeeHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 766 6
Q ss_pred ccccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355 304 TRDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI 335 (452)
Q Consensus 304 TR~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI 335 (452)
.+.+++|.+++-...-|. +-+-.|+..|+.-+
T Consensus 307 vkeqL~ReP~~~P~L~in~~~~~i~df~~eDf~l~ 341 (355)
T 1hw4_A 307 LKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIE 341 (355)
T ss_dssp HHHHTTSCCCCCCEEEECSCCCSGGGCCGGGEEEE
T ss_pred HHHHHhcCCCCCCeeEeCCCCCchhhCChhHEEEe
Confidence 677899998854322222 23455666776544
No 7
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-81 Score=626.99 Aligned_cols=256 Identities=44% Similarity=0.736 Sum_probs=234.9
Q ss_pred CchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcC
Q psy2355 71 QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKG 150 (452)
Q Consensus 71 ~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g 150 (452)
++.|+||++||++||++|+.++||||+||+|+||+||||||++| ||+|||||++||+++.||||||+|+||+++|+++|
T Consensus 6 ~~~~~qYldl~~~Il~~G~~~~dRTgtgT~s~fg~q~rfdL~~g-fPllTTKkv~~k~ii~ELLWfl~G~tNi~~L~~~g 84 (321)
T 4dq1_A 6 NSFDAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKG-FPLLTTKKVSFKLVATELLWFIKGDTNIQYLLKYN 84 (321)
T ss_dssp CHHHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGC-CCCCSSSCCCHHHHHHHHHHHHHTCCBHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHcCcCCCCCCCCCeEEEeeeeEEecCCCC-CceeeeecccHHHHHHHHHHHHhCCCcHHHHHHcC
Confidence 58899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CccccCCchhhhhhhcCccc--------------------------------------CCCCCccccccccccccccccc
Q psy2355 151 VKIWDPNSTREYLDSIGLVD--------------------------------------RKEGDLGPVYGFQWRHYGAEYK 192 (452)
Q Consensus 151 ~~iWd~n~~~~~l~~~g~~~--------------------------------------~~~GdlG~~YG~qwR~~g~~~~ 192 (452)
|+|||+|++++|+++.|+.. +++|||||+||+|||+|++
T Consensus 85 v~IWd~wa~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~f~~~il~d~~f~~~~GdLGpvYG~QwR~~~~--- 161 (321)
T 4dq1_A 85 NNIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVD--- 161 (321)
T ss_dssp CCTTHHHHHHHHTTSTTCCSSCCTTCSHHHHHCTTHHHHHHHHHHHHHHHHHHCHHHHHHHSBCCCCHHHHHHCEEC---
T ss_pred CcccCccchhhhhccccccCccccccccccccchhHHHHHHHHHHHhhhhhcccccccccCCcCccchhhHheeCcC---
Confidence 99999999999999988753 5789999999999999985
Q ss_pred cccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCCCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchH
Q psy2355 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNI 272 (452)
Q Consensus 193 ~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi 272 (452)
|+|+++|||++||++||+||+|||+|+++|||+|+++|+|||||+++||+|++|+|+|++||||+|+++|+||||
T Consensus 162 -----~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNi 236 (321)
T 4dq1_A 162 -----KDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNI 236 (321)
T ss_dssp -----TTCCEECHHHHHHHHHHHCTTCSCCEEECCCGGGTTTSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHH
T ss_pred -----CCCCchhHHHHHHHHHhcCCCCceeEEEecChHHhccCCCCCCceEEEEEEECCEEEEEEEchhhhHHHHhhccH
Confidence 668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceeeecccccc---ccc---cccccccCccccCCCCCcc--hhhhhccCCCEEEE
Q psy2355 273 ASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GTRDLFSRPFRRHGTIPLS--VYMKVYKVGDIVDI 335 (452)
Q Consensus 273 ~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~TR~mfsR~fR~~g~~pl~--~~~~~yk~Gd~VdI 335 (452)
++|++|++|||++||+++|+|+|++++ |.+ ..+.+++|.+++....-|. +-+-.|+..|+.-+
T Consensus 237 asyalL~~miAq~~Gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~in~~~~i~df~~eDf~l~ 307 (321)
T 4dq1_A 237 ASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSDKSIFDINYEDLEIV 307 (321)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEEEEEETTSHHHHHHHHHSCCCCCCEEEECCCSCGGGCCGGGEEEE
T ss_pred HHHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHHHHHhCCCCCCCCEEEECCCCCcccCCHhHEEEe
Confidence 999999999999999999999999864 765 6777899998854322221 34555666776544
No 8
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=100.00 E-value=3.2e-80 Score=654.32 Aligned_cols=266 Identities=57% Similarity=1.017 Sum_probs=246.8
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
.++.|+||++||++||++|+.++||||+||+|+||+||||||++|.||+|||||++||++++||||||+|+||+++|+++
T Consensus 233 ~n~~~~~Yl~l~~~il~~G~~~~drtg~~t~s~fg~~~r~dl~~~~fPllTtkk~~~k~~i~EllWfl~g~tn~~~l~~~ 312 (521)
T 3irm_A 233 RNREEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEELLWFLRGETYAKKLSDK 312 (521)
T ss_dssp CCHHHHHHHHHHHHHHHHCEEEECTTCCEEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTT
T ss_pred CChhHHHHHHHHHHHHHhCcCCCCCCCCceEEecceeEEEeccCCCCcceeecccchhHHHHHHHHHHhCCCcHHHHHhc
Confidence 37899999999999999999999999999999999999999999449999999999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
||+|||+|++++||++.|+.++++|||||+||+|||+|++.|.+|+++|+|+++|||++||++||+||+|||+|+++|||
T Consensus 313 g~~iWd~~~~~~~l~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~i~s~wnp 392 (521)
T 3irm_A 313 GVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNP 392 (521)
T ss_dssp TCCTTSTTTSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred CCeecCcccchhhhhhcCCccccCCcchhhhhhhhhcCCccccccccCCCCCchHHHHHHHHHHhcCCCCceEEEEecCh
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---c
Q psy2355 230 IDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---G 303 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~ 303 (452)
+|+++|+|||||+++||+|++|+|+|++||||+|++||+||||++|++|++|||++||+++|+|+|++.+ |.+ .
T Consensus 393 ~d~~~malpPCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~ 472 (521)
T 3irm_A 393 SALPRMALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEP 472 (521)
T ss_dssp TTGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHH
T ss_pred hHhhcCCCCCCceEEEEEEeCCEEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEehhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 766 6
Q ss_pred ccccccCccccCCCCCc---chhhhhccCCCEEEE
Q psy2355 304 TRDLFSRPFRRHGTIPL---SVYMKVYKVGDIVDI 335 (452)
Q Consensus 304 TR~mfsR~fR~~g~~pl---~~~~~~yk~Gd~VdI 335 (452)
.+.+++|.+|.....-| .+-+-.|+..|+.-+
T Consensus 473 ~~~ql~R~p~~~P~l~i~~~~~~~~~~~~~df~l~ 507 (521)
T 3irm_A 473 CNEQLKRVPRAFPYLVFRREREFLEDYEEGDMEVI 507 (521)
T ss_dssp HHHHTTSCCCCCCEEEESCCCSBGGGCCGGGEEEE
T ss_pred HHHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEE
Confidence 77789999885432222 133455666666543
No 9
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=100.00 E-value=9.4e-80 Score=650.04 Aligned_cols=265 Identities=54% Similarity=0.933 Sum_probs=246.8
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
.++.|+||++||++||++|+.++||||+||+|+||+||||||++| ||+|||||++||++++||||||+|+||+++|+++
T Consensus 228 ~~~~~~~Yl~l~~~il~~G~~~~dRtg~~t~s~fg~~~r~dl~~~-fPllTtkk~~~k~~i~EllWfl~g~tn~~~l~~~ 306 (515)
T 3nrr_A 228 RNHEEFQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRS-FPLLTTKKVALRSIIEELLWFIKGSTNGNDLLAK 306 (515)
T ss_dssp ECSTHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTC-CCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTT
T ss_pred CCchHHHHHHHHHHHHHhCcCCCCCCCCCeEEeccceEEEecccC-CcceeecccchhhhHHHHHHHHhCCccHHHHHHc
Confidence 479999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
||+|||+|++++||++.|+.++++|||||+||+|||+|++.|.+|+++|+++++|||++||++||+||+|||+|+++|||
T Consensus 307 g~~iWd~n~~~~wl~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~i~s~wnp 386 (515)
T 3nrr_A 307 NVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNV 386 (515)
T ss_dssp TCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCG
T ss_pred CCeecCCcchhhhhhhcCCccccCCcCcchhhhheeeCCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecCh
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---c
Q psy2355 230 IDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---G 303 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~ 303 (452)
+|+++|+|||||+++||+|++|+|+|++||||+|++||+||||++|++|++|||++||+++|+|+|++.+ |.+ .
T Consensus 387 ~~~~~malpPCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~ 466 (515)
T 3nrr_A 387 SDLKKMALPPCHCFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDA 466 (515)
T ss_dssp GGGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHH
T ss_pred hhhccCCCCCCceEEEEEEeCCEEEEEEEchhhhHHHhhhccHHHHHHHHHHHHHHhCCeeeEEEEEEEeEEEcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 765 6
Q ss_pred ccccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355 304 TRDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI 335 (452)
Q Consensus 304 TR~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI 335 (452)
.+.+++|.+|+....-|. +-+-.|+..|+.-+
T Consensus 467 ~~~ql~R~p~~~P~l~i~~~~~~~~~~~~~df~l~ 501 (515)
T 3nrr_A 467 VTTQIARIPHPFPRLRLNPDIRNIEDFTIDDIVVE 501 (515)
T ss_dssp HHHHHTSCCCCCCEEEECTTCCSGGGCCGGGEEEE
T ss_pred HHHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEE
Confidence 778899998854322221 33445666666543
No 10
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=100.00 E-value=9.9e-80 Score=650.62 Aligned_cols=265 Identities=49% Similarity=0.885 Sum_probs=246.7
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
.++.|+||++||++||++|+.++||||+||+|+||+||||||++| ||+|||||++||++++||||||+|+||+++|+++
T Consensus 233 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~gt~s~fg~~~r~dl~~~-fPllTtkk~~~k~~i~EllWfl~G~tn~~~l~~~ 311 (521)
T 3hj3_A 233 REHYEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRES-FPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEK 311 (521)
T ss_dssp BCSTHHHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSS-CCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHT
T ss_pred CCchHHHHHHHHHHHHHcCcCcCCCCCCceEEeccceEEEccccC-cceeeeccccHHHHHHHHHHHHhCCccHHHHHHc
Confidence 478999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
||+|||+|++++||++.|++++++|||||+||+|||+|++.|.+|+++|+++++|||++||++||+||+|||+|+++|||
T Consensus 312 gv~iWd~n~~~~~l~~~~~~~~~~g~lG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~ivs~wnp 391 (521)
T 3hj3_A 312 KVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNP 391 (521)
T ss_dssp TCCTTSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHSTTSSCCEEECCCT
T ss_pred CCcccCccchhhhhhhcccccccCCcccchhhhheeeCCCccccccccccccchhHHHHHHHHHhcCCCcceeEEEecCh
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeC-CEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---
Q psy2355 230 IDMPKMALPPCHCLAQFYVAD-GKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR--- 302 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~Vrd-GkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr--- 302 (452)
+|+++|+|||||+++||+|++ |+|+|++||||+|++||+||||++|++|++|||++||+++|+|+|++.+ |.+
T Consensus 392 ~d~~~malpPCh~~~qf~V~~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~ 471 (521)
T 3hj3_A 392 SALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLT 471 (521)
T ss_dssp TTGGGSSSCCSEEEEEEEECTTSEEEEEEEESCCBTTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHH
T ss_pred hHhccCCCCCceEEEEEEECCCCcEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEehhHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999864 766
Q ss_pred cccccccCccccCCCCCc---chhhhhccCCCEEEE
Q psy2355 303 GTRDLFSRPFRRHGTIPL---SVYMKVYKVGDIVDI 335 (452)
Q Consensus 303 ~TR~mfsR~fR~~g~~pl---~~~~~~yk~Gd~VdI 335 (452)
..+.+++|.+++....-| .+-+-.|+..|+.-+
T Consensus 472 ~~~~ql~R~p~~~P~l~i~~~~~~~~d~~~~df~l~ 507 (521)
T 3hj3_A 472 QLKEQLSRTPRPFPQLKFKRKVENIEDFKWEDIELI 507 (521)
T ss_dssp HHHHHTTSCCCCCCEEEESSCCSSGGGCCGGGEEEE
T ss_pred HHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEE
Confidence 677789999885432212 133445666666544
No 11
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=100.00 E-value=3e-80 Score=619.93 Aligned_cols=241 Identities=37% Similarity=0.633 Sum_probs=222.0
Q ss_pred chHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCC
Q psy2355 72 TDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGV 151 (452)
Q Consensus 72 ~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~ 151 (452)
+.|+||++||++||++|+.++||||+||+|+||+||||||++| ||+|||||++||++++||||||+|+||+++|+++||
T Consensus 3 ~~m~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~g-FPllTTKkv~~ksii~ELLWfl~G~tn~~~L~e~gv 81 (327)
T 3v8h_A 3 GSMKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQG-FPAVTTKKLAFKSAIGELVGFLRATRSAAEFRALGC 81 (327)
T ss_dssp --CHHHHHHHHHHHHHCEEECC--CCCEEEEEEEEEEEEGGGC-CCCCCSSCCCHHHHHHHHHHHHTTCCBHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHcCCccCCCCCCceEEecCceEEEecccC-CcccccccccHHHHHHHHHHHHhCCccHHHHHHcCC
Confidence 5689999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccccCCc--hhhhhhhcCcccCCCCCccccccccccccccccccccc-------------------cCCCc--------c
Q psy2355 152 KIWDPNS--TREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFT-------------------DYTDQ--------G 202 (452)
Q Consensus 152 ~iWd~n~--~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~-------------------~y~~~--------~ 202 (452)
+|||+|+ +++||++. + ++++|||||+||+|||+|++ |..+.+ .++|+ +
T Consensus 82 ~IWd~wa~~~~~~ld~~-~-~~e~GdLGpvYG~QWR~~~a-y~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~~~ 158 (327)
T 3v8h_A 82 KVWDANANENAQWLANP-Y-RRGADDLGDVYGVQWRRWPG-YKVLDAHADAQIADATSRGFRIVARFEEGGADKVLLHKA 158 (327)
T ss_dssp CTTHHHHHTCHHHHTCT-T-CCSTTBCCSCTHHHHHHEEE-EEEEETTCHHHHHHHHHTTCEEEEEEEETTEEEEEEEEE
T ss_pred cccccchhhhhhhhccc-c-cccCCCCCcchhhHhhhccc-cccccccchhhhhhhhcccceeccccCCCcccccccccc
Confidence 9999999 78999875 3 57899999999999999997 655554 34566 7
Q ss_pred hhHHHHHHHHHhcCCCCcceEEEeeCCCCCCCCCCCCceeeEEE--EEeCCEEEEEEEeecCccCCcccchHHHHHHHHH
Q psy2355 203 IDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQF--YVADGKLSCQLYQRSADMGLGVPFNIASYSLLTY 280 (452)
Q Consensus 203 ~DQl~~vI~~Lk~nP~SRR~Iis~WnP~dl~~~~lpPC~~~~QF--~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~ 280 (452)
+|||++||++||+||+|||+|+++|||+|+++|+|||||+++|| +|++|+|+|++||||+|++||+||||++|++|++
T Consensus 159 iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~malpPCh~~~qF~~~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~ 238 (327)
T 3v8h_A 159 IDQLRDCLDTIVRDPSSRRILFHGWNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLT 238 (327)
T ss_dssp ECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTTTEEEEEEEEEEEETTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCccceEEEecChhHhccCCCCCCceEEEEeeeecCCeEEEEEEeehhhhHhHhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeecccccc---ccc---cccccccCccccCC
Q psy2355 281 MIAHVTGLQRTSNMTNSKG---YRR---GTRDLFSRPFRRHG 316 (452)
Q Consensus 281 mIA~~~Gl~~G~~mHnSkG---YRr---~TR~mfsR~fR~~g 316 (452)
|||++||+++|+|+|++++ |.+ ..+.+++|.+++..
T Consensus 239 miA~~~gl~~G~~~h~~gdaHIY~nHie~~~eqL~R~p~~~P 280 (327)
T 3v8h_A 239 LVGRLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESP 280 (327)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCC
T ss_pred HHHHHhCCeeeEEEEEEeeeEeehhHHHHHHHHhCCCCCCCC
Confidence 9999999999999999864 766 67788999988543
No 12
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=100.00 E-value=1.2e-79 Score=615.84 Aligned_cols=252 Identities=52% Similarity=0.850 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCCcc
Q psy2355 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKI 153 (452)
Q Consensus 74 e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~~i 153 (452)
|+|||+||++||++|+.++||||+||+|+||+||||||++| ||+|||||++||+++.||||||+|+||+++|++.||+|
T Consensus 2 e~qYldLl~~IL~~G~~k~dRTGtgT~SvFG~q~rfdL~~g-FPlLTTKkv~~Ksii~ELLWFl~G~Tn~~~L~e~gv~I 80 (315)
T 3uwl_A 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKG-FPLLTTKRVPFGLIKSELLWFLKGDTNIRYLLERNNHI 80 (315)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEEGGGC-CCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCT
T ss_pred hHHHHHHHHHHHHcCCCcCCCCCCceEEEeeeeEEEeccCC-CceeeeccchHHHHHHHHHHHHcCCccHHHHHHcCCCc
Confidence 78999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhhcCccc--------------------------------------CCCCCcccccccccccccccccccc
Q psy2355 154 WDPNSTREYLDSIGLVD--------------------------------------RKEGDLGPVYGFQWRHYGAEYKDMF 195 (452)
Q Consensus 154 Wd~n~~~~~l~~~g~~~--------------------------------------~~~GdlG~~YG~qwR~~g~~~~~~~ 195 (452)
||+|++++|+++.++.. +..|||||+||+|||+|++
T Consensus 81 Wd~wa~~~~l~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~f~~~i~~d~~~~~~~GdlGpvYG~QwR~~~~------ 154 (315)
T 3uwl_A 81 WDEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEHQKFCDAILNDAEFAEKYGELGNIYGAQWRHWET------ 154 (315)
T ss_dssp TCHHHHHHHHHSSSCCC---------------------CHHHHHHHHHHHCHHHHHHHSBCCSSHHHHHHCEEC------
T ss_pred ccccchhhhhhcccccCcccccccceeeccchhhhhhhhHHHHhhhhhccccccccccCcccccCccccccccC------
Confidence 99999999998776521 1128999999999999974
Q ss_pred ccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCCCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHH
Q psy2355 196 TDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275 (452)
Q Consensus 196 ~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~y 275 (452)
++++++|||++||++||+||+|||+|+++|||.++++|+|||||+++||+|++|+|+|++||||+|++||+||||++|
T Consensus 155 --~~g~~iDQi~~vi~~Lk~nP~sRR~i~s~Wnp~~~~~~~lpPCh~~~qf~v~~~~L~~~lyqRS~D~~lG~pfNiasy 232 (315)
T 3uwl_A 155 --KDGSFIDQLANVIEMIKTNPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASY 232 (315)
T ss_dssp --TTSCEECHHHHHHHHHHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHH
T ss_pred --CCCCcchHHHHHHHHhccCCCCCeEEEEecCHHHHhcCCccccceEEEEEECCCeEEEEEEeehhhhhhcccHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeeecccccc---ccc---cccccccCccccCCCCCc---chhhhhccCCCEEE
Q psy2355 276 SLLTYMIAHVTGLQRTSNMTNSKG---YRR---GTRDLFSRPFRRHGTIPL---SVYMKVYKVGDIVD 334 (452)
Q Consensus 276 alL~~mIA~~~Gl~~G~~mHnSkG---YRr---~TR~mfsR~fR~~g~~pl---~~~~~~yk~Gd~Vd 334 (452)
|+|++|||++||++||+|+|++++ |.+ ..+.+++|.+++-..+-| -+-+-.|+..|+.-
T Consensus 233 alL~~miA~~~gl~~G~~~h~~gd~HIY~nh~e~~~~ql~R~p~~~P~L~in~~~~~i~d~~~~Df~l 300 (315)
T 3uwl_A 233 ALLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKV 300 (315)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTTCCCGGGCCGGGEEE
T ss_pred HHHHHHHHHHhCCccceEEEEeeeeEeeHhHHHHHHHHhCCCCCCCCeEEECCCCCccccCCHHHEEE
Confidence 999999999999999999999864 765 667789999885432222 12344566666653
No 13
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=100.00 E-value=6.8e-79 Score=595.85 Aligned_cols=241 Identities=50% Similarity=0.828 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCCcc
Q psy2355 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKI 153 (452)
Q Consensus 74 e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~~i 153 (452)
|+||++||++||++|+.++||||+||+|+||+||||||++| ||++||||++||++++||||||+|+||+++|+++|++|
T Consensus 2 m~~Yl~l~~~Il~~G~~~~dRTg~gT~s~fg~~~rfdL~~~-fPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~gv~i 80 (264)
T 3qj7_A 2 MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAG-FPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTI 80 (264)
T ss_dssp CCHHHHHHHHHHHHCEEECCTTSCCEEEEESCEEEEEGGGC-CCCCTTTTCCHHHHHHHHHHHHHTCCBSHHHHTTTCCT
T ss_pred hHHHHHHHHHHHHcCcCCCCCCCCceEEEecceEEEecCCC-CceeecccccHHHHHHHHHHHHcCCCcHHHHHHhCCCc
Confidence 68999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCCCCC
Q psy2355 154 WDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMP 233 (452)
Q Consensus 154 Wd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~dl~ 233 (452)
||+|+ +++|||||+||+|||+|++ |+++++|||++||++||+||+|||+|+++|||+|++
T Consensus 81 Wd~wa------------~e~GdlG~vYG~qwr~~~~--------~~g~~~DQi~~vI~~Lk~nP~SRR~ivs~Wnp~dl~ 140 (264)
T 3qj7_A 81 WDEWA------------SDTGELGPIYGVQWRSWPA--------PSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIE 140 (264)
T ss_dssp TGGGC------------CTTSBCCSCHHHHHHHEEC--------TTSCEECHHHHHHHHHHHCTTCSCCEEECCCGGGGG
T ss_pred chhhc------------ccCCCCccccchhheecCC--------CCcccHHHHHHHHHHHhcCCCCceEEEEccChhHhc
Confidence 99984 6789999999999999975 668899999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---ccccc
Q psy2355 234 KMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GTRDL 307 (452)
Q Consensus 234 ~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~TR~m 307 (452)
+|+|||||+++||+|++|+|+|++||||+|+++|+||||++||+|++|||++||+++|+|+|++++ |.+ ..+.+
T Consensus 141 ~malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~q 220 (264)
T 3qj7_A 141 RMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQ 220 (264)
T ss_dssp GSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred cCCCCCceEEEEEEEeCCEEEEEEEhhhhhHHHHhhccHHHHHHHHHHHHHhcCCeeeEEEEEEEEEEEEHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 765 67788
Q ss_pred ccCccccCCCCCc--chhhhhccCCCEEEE
Q psy2355 308 FSRPFRRHGTIPL--SVYMKVYKVGDIVDI 335 (452)
Q Consensus 308 fsR~fR~~g~~pl--~~~~~~yk~Gd~VdI 335 (452)
++|.+|+....-| -+-+-.|+..|+.-+
T Consensus 221 L~R~p~~~P~l~i~~~~~~~d~~~~Df~l~ 250 (264)
T 3qj7_A 221 LSREPRPYPKLLLADRDSIFEYTYEDIVVK 250 (264)
T ss_dssp HTSCCCCCCEEEEECCSSGGGCCGGGEEEE
T ss_pred hcCCCCCCCEEEeCCCCChhcCCHhHEEEE
Confidence 9999884332212 123444666666533
No 14
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=100.00 E-value=6e-78 Score=642.97 Aligned_cols=265 Identities=52% Similarity=0.931 Sum_probs=246.6
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
.++.|+||++||++||++|+.++||||+||+|+||+||||||+++ ||+|||||++||++++||||||+|+||+++|+++
T Consensus 321 ~~~~~~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~~-fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~ 399 (608)
T 3qg2_A 321 KYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQY-FPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNK 399 (608)
T ss_dssp ECSTHHHHHHHHHHHHHHCEEECCSSSCCEEEEEEEEEEEETTTC-CCCCCSSCCCCHHHHHHHHHHHTTCCBHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHcCCccCCCCCCceEEecceeEEEccccC-CceeecccccHHHHHHHHHHHHhCCccHHHHHHc
Confidence 468999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
|++|||+|++++|+++.|+.++++|||||+||+|||+|++.|.+|.++|+|+++|||++||++||+||+|||+|+++|||
T Consensus 400 gv~IWd~n~~~~~~~~~~~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp 479 (608)
T 3qg2_A 400 NVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNV 479 (608)
T ss_dssp TCCTTGGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred CCCccCccchhhhhhccccccccCCCCchhhhHhhhcCCCccccchhcccccchHHHHHHHHHHhhCCCccceEEEecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---c
Q psy2355 230 IDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---G 303 (452)
Q Consensus 230 ~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~ 303 (452)
+|+++|+|||||+++||+|++|+|+|++||||+|++||+||||++|++|++|||++||+++|+|+|++.+ |.+ .
T Consensus 480 ~dl~~maLpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~fih~~gdaHIY~nH~e~ 559 (608)
T 3qg2_A 480 KDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDS 559 (608)
T ss_dssp TTGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHH
T ss_pred hHhccCCCCCceEEEEEEEeCCeEEEEEEeehhhhhhhhhccHHHHHHHHHHHHHHhCCeeeEEEEEeeeeEEeHhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 766 6
Q ss_pred ccccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355 304 TRDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI 335 (452)
Q Consensus 304 TR~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI 335 (452)
.+.+++|.+|.....-|. +-+-.|+..|+.-+
T Consensus 560 ~~~qL~R~p~~~P~l~i~~~~~~i~df~~~Df~l~ 594 (608)
T 3qg2_A 560 LKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQ 594 (608)
T ss_dssp HHHHHTSCCCCCCEEEECTTCCSGGGCCGGGEEEE
T ss_pred HHHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEe
Confidence 777899998854322221 33445666676544
No 15
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=100.00 E-value=1.2e-76 Score=586.12 Aligned_cols=229 Identities=43% Similarity=0.824 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhh-----
Q psy2355 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSD----- 148 (452)
Q Consensus 74 e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~----- 148 (452)
|+||++||++||++|+.++||||+||+|+||+||||||++| ||++||||++||++++||||||+|+||+++|++
T Consensus 1 ~~qYl~l~~~Il~~G~~~~dRTG~gT~sifg~q~r~dl~~g-fPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~~~~~ 79 (286)
T 1tis_A 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKG-FPAVTTKKLAWKACIAELIWFLSGSTNVNDLRLIQHDS 79 (286)
T ss_dssp CCHHHHHHHHHHTTCCEECCSSCSCEEEEECCEEEEEGGGC-CCCCCSSCCCCHHHHHHHHHHHHTCCBHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEecCCC-CcccccccccHHHHHHHHHHHHcCCCcHHHHHhhhccc
Confidence 57999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred --cCCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEe
Q psy2355 149 --KGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCA 226 (452)
Q Consensus 149 --~g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~ 226 (452)
+|++|||+|++++|+++ ..++||+|++||+|||+|+ ++|||++||++||+||+|||+|+++
T Consensus 80 ~~~gv~iWd~~~~~~~l~~----~~~~GdlG~vYG~qwR~~~-------------~~DQi~~vI~~Lk~nP~SRR~ivs~ 142 (286)
T 1tis_A 80 LIQGKTVWDENYENQAKDL----GYHSGELGPIYGKQWRDFG-------------GVDQIIEVIDRIKKLPNDRRQIVSA 142 (286)
T ss_dssp SSSSCCTTHHHHTTTTGGG----TCCTTBCCSCHHHHHHCBT-------------TBCHHHHHHHHHHHSTTCSCCBCCC
T ss_pred cccCCcccccccccchhhh----cccCCcchhhhHHHHhcCC-------------cchHHHHHHHHHhcCCCCccEEEEe
Confidence 89999999999999886 3578999999999999995 5899999999999999999999999
Q ss_pred eCCCCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc-
Q psy2355 227 WNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR- 302 (452)
Q Consensus 227 WnP~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr- 302 (452)
|||+|+++|+|||||+++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|++++ |.+
T Consensus 143 Wnp~dl~~malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh 222 (286)
T 1tis_A 143 WNPAELKYMALPPCHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNH 222 (286)
T ss_dssp CCGGGGGGCSSCCSEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSC
T ss_pred cChhHhhcCCCCCceEEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEeeeEeeHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 665
Q ss_pred --cccccccCccccCCCCCc
Q psy2355 303 --GTRDLFSRPFRRHGTIPL 320 (452)
Q Consensus 303 --~TR~mfsR~fR~~g~~pl 320 (452)
..+.+++|.+++-....|
T Consensus 223 ~e~v~~qL~R~p~~~P~l~i 242 (286)
T 1tis_A 223 VEQCKEILRREPKELCELVI 242 (286)
T ss_dssp CTTTGGGSSCCCCSCCCCEE
T ss_pred HHHHHHHHcCCCCCCCeEEE
Confidence 677889999886544433
No 16
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=100.00 E-value=9.7e-77 Score=538.28 Aligned_cols=156 Identities=42% Similarity=0.715 Sum_probs=153.6
Q ss_pred ccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeec
Q psy2355 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRV 373 (452)
Q Consensus 294 mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v 373 (452)
|++|+|+|++||+||||+||+||++||+|||++|++||+|||+|||||||||||+|||||||+||||||+||||+|||+|
T Consensus 1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v 80 (157)
T 4a17_P 1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIV 80 (157)
T ss_dssp -CCCCCTTTTCHHHHSCCTTCTTCCCHHHHHCCCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEE
T ss_pred CCCCCCCcCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeeccccccCChHHHHHHHhHhHHHHHHHHHcCCccccCCCCCCCcCeeEeecCCcceeeccccceec
Q psy2355 374 RTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGRTAPVMLAPIPYEFI 451 (452)
Q Consensus 374 ~~~~~~Kri~v~~eHik~sk~~~~fl~rvk~nd~~k~eak~~g~~v~~k~~p~~pr~~~~v~~~~~~~~l~p~py~~~ 451 (452)
+||||+|||||||||||||+|||+||+|||||||+|+||||+|+||||||||||||||||| +++||+||||||||+
T Consensus 81 ~gkil~KrI~VriEHik~sk~r~~flkrvkend~~kkeak~kg~~v~lKrqp~~pr~a~~v--~~~pe~l~pipye~~ 156 (157)
T 4a17_P 81 NGRYIEKRLHVKIEHVRPSNVKTALSKRYQANDQAKAEGNKAGKRVSTKRNPGQPLEAVQV--QGAVNFQHPKVFREI 156 (157)
T ss_dssp TTEEEEEEEEEEGGGEEECHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCCCCCEEE--CCCCCCCCCCCCCCC
T ss_pred CCEeeeeEEEEeHHHccccccHHHHHHHHHHhHHHHHHHHhcCCccccccCCCCCCcceEe--CCceEEEeccceEee
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999986
No 17
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=100.00 E-value=1.4e-77 Score=545.25 Aligned_cols=158 Identities=61% Similarity=1.010 Sum_probs=156.3
Q ss_pred ccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeec
Q psy2355 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRV 373 (452)
Q Consensus 294 mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v 373 (452)
|++|+|+|++||+||||+||+||++||++||++|++||+|||+|||||||||||+|||||||+||||||+||||+||++|
T Consensus 1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v 80 (160)
T 3izc_U 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMV 80 (160)
T ss_dssp CCSCCCSSTTCHHHHCCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEECCCS
T ss_pred CCCCCCCCCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeeccccccCChHHHHHHHhHhHHHHHHHHHcCCccccCCCCCCCcCeeEeecC-Ccceeeccccceec
Q psy2355 374 RTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGR-TAPVMLAPIPYEFI 451 (452)
Q Consensus 374 ~~~~~~Kri~v~~eHik~sk~~~~fl~rvk~nd~~k~eak~~g~~v~~k~~p~~pr~~~~v~~~-~~~~~l~p~py~~~ 451 (452)
+||||+|||||||||||||+|||+||+|||||||+|+||||+|+|||||||||||||||||+++ ++||+|+||||||+
T Consensus 81 ~gkil~KrI~VriEHik~sk~r~~flkrvkend~~kkeak~kg~~v~lKrqp~~pr~a~~v~t~~~~pe~l~pipye~~ 159 (160)
T 3izc_U 81 GNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYETF 159 (160)
T ss_dssp SSSCCCEEEEECTTSEEECHHHHHHHHHHHHHHHHHHHHHHSCCSCSTTHHHHTTCCCCCSCCSSSHHHHHTTSSCTTT
T ss_pred CCEeeeeEEEEeHHHccccccHHHHHHHHHHhHHHHHHHHhcCCcccccccCCCCcceEEEECCCCceEEEeccceEee
Confidence 9999999999999999999999999999999999999999999999999999999999999987 99999999999986
No 18
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=100.00 E-value=6.3e-78 Score=548.86 Aligned_cols=158 Identities=52% Similarity=0.918 Sum_probs=155.5
Q ss_pred ccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeec
Q psy2355 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRV 373 (452)
Q Consensus 294 mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v 373 (452)
|++|+|+|++||+||||+||+||++||+|||++|++||+|||++||||||||||+|||||||+|||||||||||+|||||
T Consensus 1 m~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~Vnk~v 80 (164)
T 3iz5_U 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (164)
T ss_dssp CCCCCCTTSSCHHHHCCCGGGCSCCCTHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEEECCS
T ss_pred CCCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEEEeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeeccccccCChHHHHHHHhHhHHHHHHHHHcCCccccCCCCCCCcCeeEeecCCcceeeccccceecC
Q psy2355 374 RTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGRTAPVMLAPIPYEFIA 452 (452)
Q Consensus 374 ~~~~~~Kri~v~~eHik~sk~~~~fl~rvk~nd~~k~eak~~g~~v~~k~~p~~pr~~~~v~~~~~~~~l~p~py~~~~ 452 (452)
+||||+|||||||||||||+||++||+|||||||+|+||||+|+||||||||+|||||||| .+++||+|+||||||||
T Consensus 81 ~gkil~KrInVriEHik~sk~r~~Flkrvkend~kkkeakekg~~v~lKrqp~~Pr~a~~v-~~~~pe~l~pipye~~~ 158 (164)
T 3iz5_U 81 GNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMV-EGTTIETVTPIPYDVVN 158 (164)
T ss_dssp SSSCCEEEEEECGGGEEECHHHHHHHHHHHHHHHHHHHTTTSCCSCSTTHHHHTTCCCCCC-HHHHHHHTTTSSCSHHH
T ss_pred CCeeeeeEEEEeHHHcccccCHHHHHHHHHHhHHHHHHHHhcCCcccccccCCCCcceeEE-CCCCeEEEeceeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999 55999999999999985
No 19
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=100.00 E-value=3.9e-76 Score=577.91 Aligned_cols=241 Identities=47% Similarity=0.813 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcCCcc
Q psy2355 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKI 153 (452)
Q Consensus 74 e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g~~i 153 (452)
|+||+++|++||++|+.++||||++|+|+||++|||||++| ||++||||++||++++||||||+|+||+++|+++|++|
T Consensus 1 ~~~Yl~l~~~Il~~G~~~~drtG~~T~s~fg~~~r~dl~~~-fPllTtkk~~~ks~i~ELlWfl~G~tn~~~l~~~gv~i 79 (264)
T 2g8o_A 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTI 79 (264)
T ss_dssp CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGC-CCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCT
T ss_pred CHHHHHHHHHHHHcCcCccCCCCCeEEEEeeeEEEeecCCC-CceeeccccchhhhHHHHHHHHcCCCcHHHHHHcCCCc
Confidence 58999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCCCCC
Q psy2355 154 WDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMP 233 (452)
Q Consensus 154 Wd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~dl~ 233 (452)
||+|+ +++||+|++||+|||+|+. .+|+++|||++||++||+||+|||+|+++|||+|++
T Consensus 80 Wd~~~------------~~~G~lG~vYG~qwr~~~~--------~~g~~iDQi~~vI~~Lk~nP~sRR~i~s~wnp~dl~ 139 (264)
T 2g8o_A 80 WDEWA------------DENGDLGPVYGKQWRAWPT--------PDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELD 139 (264)
T ss_dssp TGGGC------------CTTSBCCSCHHHHHHHEEE--------TTTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGG
T ss_pred chhcc------------CCCCCcccchhHHHhhccC--------CCCCchHHHHHHHHHHhcCCCCceEEEEecChhHhh
Confidence 99995 4679999999999999974 246689999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---ccccc
Q psy2355 234 KMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GTRDL 307 (452)
Q Consensus 234 ~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~TR~m 307 (452)
+|+|||||+++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|++++ |.+ ..+.+
T Consensus 140 ~m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~v~~q 219 (264)
T 2g8o_A 140 KMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQ 219 (264)
T ss_dssp GSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred cCCCCCcceEEEEEEECCEEEEEEEhhhhHHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 765 66778
Q ss_pred ccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355 308 FSRPFRRHGTIPLS---VYMKVYKVGDIVDI 335 (452)
Q Consensus 308 fsR~fR~~g~~pl~---~~~~~yk~Gd~VdI 335 (452)
++|.+++-....+. +-+-.|+..|+.-+
T Consensus 220 L~r~p~~~P~l~i~~~~~~~~d~~~~df~l~ 250 (264)
T 2g8o_A 220 LSREPRPLPKLIIKRKPESIFDYRFEDFEIE 250 (264)
T ss_dssp HTSCCCCCCEEEECCCCSSTTCCCGGGEEEE
T ss_pred hccCCCCCCeeecCCCCCchhcCChhHEEEe
Confidence 99998854433332 23444666666543
No 20
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=100.00 E-value=5.9e-76 Score=597.06 Aligned_cols=244 Identities=48% Similarity=0.874 Sum_probs=212.8
Q ss_pred CchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcC
Q psy2355 71 QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKG 150 (452)
Q Consensus 71 ~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g 150 (452)
.-.|+||++||++||++|+.++||||+||+|+||+||||||++| ||++||||++||++++||||||+|+||+++|+++|
T Consensus 94 ~g~~~~Yl~l~~~Il~~G~~~~dRTG~~T~s~fg~~~rfdl~~g-fPllTtkk~~~k~~i~EllWfl~G~tn~~~L~~~g 172 (360)
T 3ix6_A 94 IGGMRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEG-FPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKENG 172 (360)
T ss_dssp ---CHHHHHHHHHHHHHCEEECC----CEEEEEEEEEEEEGGGC-CCCC---CCCHHHHHHHHHHHHHCCCBTHHHHHTT
T ss_pred CchHHHHHHHHHHHHHhCcCCCCCCCccEEEeccceeEEecCCC-CcccccccccHHHHHHHHHHHHcCCCcHHHHHHhC
Confidence 45789999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCC
Q psy2355 151 VKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPI 230 (452)
Q Consensus 151 ~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~ 230 (452)
++|||+|+ +++||+|++||+|||+|++. +|+++|||++||++||+||+|||+|+++|||+
T Consensus 173 v~iWd~wa------------~~~g~lG~vYG~qwR~~~~~--------~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wnp~ 232 (360)
T 3ix6_A 173 VTIWDEWA------------DENGDLGPVYGYQWRSWPAP--------DGRHIDQIANLLKMLHTNPQSRRLIVSAWNPA 232 (360)
T ss_dssp CCTTGGGC------------CTTSBCSSCHHHHHHHEECT--------TSCEECHHHHHHHHHHHCTTCSCCEEECCCHH
T ss_pred CCccchhc------------ccCCCCccchhhhheeecCC--------CCCchHHHHHHHHHHhcCCCcceeEEEecChH
Confidence 99999984 67899999999999999852 46789999999999999999999999999999
Q ss_pred CCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---cc
Q psy2355 231 DMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GT 304 (452)
Q Consensus 231 dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~T 304 (452)
|+++|+|||||+++||+|++|+|+|++||||+|++||+||||++|++|++|||++||+++|+|+|++.+ |.+ ..
T Consensus 233 dl~~mal~PCh~~~qF~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~ 312 (360)
T 3ix6_A 233 LVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQA 312 (360)
T ss_dssp HHTTCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred HhccCCCCCCcEEEEEEEeCCEEEEEEEehhhhHHHhhhhHHHHHHHHHHHHHHHhCCcceEEEEEEeeeEEeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 765 67
Q ss_pred cccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355 305 RDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI 335 (452)
Q Consensus 305 R~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI 335 (452)
+.+++|.+++....-|. +-+-.|+..|+.-+
T Consensus 313 ~~qL~R~p~~~P~l~i~~~~~~~~d~~~~Df~l~ 346 (360)
T 3ix6_A 313 RLQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLD 346 (360)
T ss_dssp HHHTTSCCCCCCEEEECTTCCSGGGCCGGGEEEE
T ss_pred HHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEE
Confidence 77899998844322121 23444666666443
No 21
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=100.00 E-value=1e-74 Score=570.88 Aligned_cols=243 Identities=35% Similarity=0.603 Sum_probs=218.5
Q ss_pred chHHHHHHHHHHHHhcCcccCC----------CCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHH-HHhCC
Q psy2355 72 TDEQQYLHLLDKIIKTGHKKSD----------RTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLW-FIKGS 140 (452)
Q Consensus 72 ~~e~~Yl~ll~~IL~~G~~~~d----------RTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLW-fL~Gs 140 (452)
.+|+||+++|++||++|+.++| |||+||+|+||+||||| +++ ||++||||++||++++|||| ||+|+
T Consensus 2 ~~~~~Yl~l~~~Il~~G~~~~d~~~r~~~~~drTg~~T~s~fg~~~r~d-~~~-fPllTtkk~~~k~~i~EllWifl~G~ 79 (278)
T 1bkp_A 2 QFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSE-VPILTTKKVAWKTAIKELLWIWQLKS 79 (278)
T ss_dssp CHHHHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEEC-SSS-CCCCSSSCCCHHHHHHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHHHHcCccCCCcccccccccCCCCCceEEecceEEEEc-ccc-ccccccccccHHhhHHHHHHHHHcCC
Confidence 6799999999999999998866 89999999999999999 887 99999999999999999999 99999
Q ss_pred CChhhhhhcCCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCc
Q psy2355 141 TNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDR 220 (452)
Q Consensus 141 tdv~~L~~~g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SR 220 (452)
||+++|+++|++|||+|+ +++||+|++||+|||+|+.. ++|+++|||++||++||+||+||
T Consensus 80 tn~~~L~~~gv~iWd~w~------------~~~gdlG~vYG~qwr~~~~~-------~~g~~iDQi~~vI~~Lk~nP~SR 140 (278)
T 1bkp_A 80 NDVNDLNMMGVHIWDQWK------------QEDGTIGHAYGFQLGKKNRS-------LNGEKVDQVDYLLHQLKNNPSSR 140 (278)
T ss_dssp CBHHHHHTTTCCTTGGGC------------CTTSBCBSCTHHHHHCCCEE-------ETTEEECHHHHHHHHHHHSTTCS
T ss_pred CcHHHHHHhCCCcccccc------------ccCCcccccccHhhhhccCC-------CCCcchHHHHHHHHHHhcCCCCC
Confidence 999999999999999984 57899999999999999632 34667999999999999999999
Q ss_pred ceEEEeeCCCCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc-
Q psy2355 221 RIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG- 299 (452)
Q Consensus 221 R~Iis~WnP~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG- 299 (452)
|+|+++|||+|+++|+|||||+++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|++++
T Consensus 141 R~ivs~wnp~dl~~m~lpPC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gda 220 (278)
T 1bkp_A 141 RHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDC 220 (278)
T ss_dssp CCEEESCCTTTGGGBSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cEEEEecChhhhhccCCCCeeEEEEEEEECCEEEEEEEhhhhHHHhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEEEeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred --ccc---cccccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355 300 --YRR---GTRDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI 335 (452)
Q Consensus 300 --YRr---~TR~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI 335 (452)
|.+ ..+.+++|.++.....-|. +-+-.|+..|+.-+
T Consensus 221 HIY~nh~e~v~~qL~r~p~~~P~l~i~~~~~~~~d~~~~Df~l~ 264 (278)
T 1bkp_A 221 HVYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLI 264 (278)
T ss_dssp EEEGGGHHHHHHHHHSCCCCCCEEEECTTCCSGGGCCGGGEEEE
T ss_pred EEcHHHHHHHHHHhcCCCCCCCEEEECCCCCchhhCCHhHEEEe
Confidence 765 6677899998854322222 23445666776543
No 22
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2e-75 Score=531.16 Aligned_cols=159 Identities=70% Similarity=1.130 Sum_probs=95.8
Q ss_pred ccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeec
Q psy2355 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRV 373 (452)
Q Consensus 294 mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v 373 (452)
|.+|+|||++||+||||+||+||++||++||++|++||+|||++||||||||||+|||||||+||||||+||||+||++|
T Consensus 1 M~~s~G~R~~TR~~fsr~fRk~G~~plst~m~~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v 80 (160)
T 2zkr_q 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQV 80 (160)
T ss_dssp ---CCSSSTTCHHHHSCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECC
T ss_pred CCCCCCccccchHhhCCCccccCCCcHHHHHHHcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEee
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeeccccccCChHHHHHHHhHhHHHHHHHHHcCCccccCCCCCCCcCeeEeecC-CcceeeccccceecC
Q psy2355 374 RTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGR-TAPVMLAPIPYEFIA 452 (452)
Q Consensus 374 ~~~~~~Kri~v~~eHik~sk~~~~fl~rvk~nd~~k~eak~~g~~v~~k~~p~~pr~~~~v~~~-~~~~~l~p~py~~~~ 452 (452)
+||||+||||||||||+||+||++||+|||||||+++||||+|+||||||||+|||+||||+++ ++||+|+||||||+|
T Consensus 81 ~~kil~Kri~vr~eHik~sk~r~~Fl~rvk~n~~~k~eak~kg~~v~lKrqp~~Pr~a~~v~~~~~~pe~~~pipy~~~~ 160 (160)
T 2zkr_q 81 KGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYEFMA 160 (160)
T ss_dssp SSCCSCEEEEECGGGEEEC-------------------------------------------------------------
T ss_pred CCeeeeeEEEcCHHHcCccccHHHHHHHHHHhHHHHHHHHhcCCEeeecccCCCCcceEEEECCCCceEEecccceEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 999999999999986
No 23
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=100.00 E-value=1.9e-64 Score=491.33 Aligned_cols=212 Identities=24% Similarity=0.310 Sum_probs=195.9
Q ss_pred CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK 149 (452)
Q Consensus 70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~ 149 (452)
..+.+++|++++++||++|. +.||||++|+|+||++++||. |++ +||++|+++++||||||+|+||+++|+++
T Consensus 5 ~~t~~~~y~~l~~~Il~~G~-~~drtg~~t~s~~g~~~r~~~-----P~~-~kk~~~k~~i~EllWfl~G~tn~~~l~~~ 77 (246)
T 1b5e_A 5 SMTVEEIRLHLGLALKEKDF-VVDKTGVKTIEIIGASFVADE-----PFI-FGALNDEYIQRELEWYKSKSLFVKDIPGE 77 (246)
T ss_dssp CBCHHHHHHHHHHHHHTTCC-EECTTSCEEEEEEEEEEECCS-----SCS-SSCCCHHHHHHHHHHHHHTCSBGGGSSSS
T ss_pred cCCHHHHHHHHHHHHHHcCC-CcCCCCCceEEECcEEEEEcC-----ccc-cccccHHHHHHHHHHHhhCCCcHHHHHhh
Confidence 46789999999999999995 899999999999999999982 888 89999999999999999999999999999
Q ss_pred CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355 150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP 229 (452)
Q Consensus 150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP 229 (452)
+++|||+|+ +++|++|++|| ||.|+. .++|||++||++||+||+|||+|+++|||
T Consensus 78 ~~~iwd~~~------------~~~g~lg~~YG--wR~~~~-----------~~~DQi~~vI~~Lk~nP~SRR~i~s~wnp 132 (246)
T 1b5e_A 78 TPKIWQQVA------------SSKGEINSNYG--WAIWSE-----------DNYAQYDMCLAELGQNPDSRRGIMIYTRP 132 (246)
T ss_dssp CCHHHHHHS------------CTTSBCSCCHH--HHHHCG-----------GGTCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred cchhhhhhc------------ccCCCCCCCCC--eeECCC-----------CCchHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 999999873 56899999999 999962 36899999999999999999999999999
Q ss_pred CCCC-----CCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHH-----HHHHHHHHHHHH--hCCceeeecccc
Q psy2355 230 IDMP-----KMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIA-----SYSLLTYMIAHV--TGLQRTSNMTNS 297 (452)
Q Consensus 230 ~dl~-----~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~-----~yalL~~mIA~~--~Gl~~G~~mHnS 297 (452)
+++. +|+|||||+++||+|++|+|+|++||||||+++|+||||+ +|++|++|||++ ||+++|+|+|++
T Consensus 133 ~~~~d~~~~~m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~~~~~~syalL~~miA~~~~~gl~~G~~~h~~ 212 (246)
T 1b5e_A 133 SMQFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNV 212 (246)
T ss_dssp THHHHTTGGGCCCCCCEEEEEEEEETTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEE
T ss_pred hhhcccccccccCCceeEEEEEEEECCEEEEEEEhhhhhhhhhccchHHHhhhHHHHHHHHHHhhhhccCCceeEEEEEE
Confidence 9864 7999999999999999999999999999999999999999 999999999999 999999999998
Q ss_pred cc---ccc---cccccccCccc
Q psy2355 298 KG---YRR---GTRDLFSRPFR 313 (452)
Q Consensus 298 kG---YRr---~TR~mfsR~fR 313 (452)
++ |.+ ..+.+++|.++
T Consensus 213 gdaHIY~nh~e~~~~~L~r~~~ 234 (246)
T 1b5e_A 213 GSLHVYSRHFYLVDHWWKTGET 234 (246)
T ss_dssp EEEEEEGGGHHHHHHHHHHCCS
T ss_pred EeEEEcHHHHHHHHHHHhhCCc
Confidence 65 765 55566777665
No 24
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q
Probab=100.00 E-value=1.4e-52 Score=362.81 Aligned_cols=106 Identities=58% Similarity=0.948 Sum_probs=104.1
Q ss_pred cccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeecc
Q psy2355 295 TNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVR 374 (452)
Q Consensus 295 HnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~ 374 (452)
.+++|+|++||+||||+||+||++||++||++|++||+||||+||||||||||||||||||+||||||+||||+|||||+
T Consensus 1 ~~skG~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGKTGrV~nvt~~AvgivVnkqv~ 80 (116)
T 3jyw_Q 1 GKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVG 80 (116)
T ss_dssp CCCCSSSSSCHHHHSCCSTTCSSCCSSTTTCCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEECCCS
T ss_pred CCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEeccCccCCCCCCcccCCCCeEEEeecCcEEEEEEEEEEC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEeeccccccCChHHHHH
Q psy2355 375 TRIIPKRINVRIEHIKHSKCREDFLK 400 (452)
Q Consensus 375 ~~~~~Kri~v~~eHik~sk~~~~fl~ 400 (452)
||||+|||||||||||||||||+|+.
T Consensus 81 gKil~KrInVriEHik~sk~r~~~~~ 106 (116)
T 3jyw_Q 81 NRYLEKRLNLRVEHIKHSKAAAAAAA 106 (116)
T ss_dssp SSSCCCEEEECGGGBCCCCCSGGGHH
T ss_pred CeeeeeEEEECHhHCccccCHHHHHH
Confidence 99999999999999999999999994
No 25
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.4e-47 Score=318.50 Aligned_cols=97 Identities=29% Similarity=0.455 Sum_probs=92.4
Q ss_pred eccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEee
Q psy2355 293 NMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKR 372 (452)
Q Consensus 293 ~mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~ 372 (452)
.|++++|+|++||+||||+||+||++||++||++|++||+||||+||||||||||||||||||+||||||+||||+||+
T Consensus 1 mm~~s~G~R~~TR~~fsr~fRk~G~~pls~~m~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn~- 79 (97)
T 3j21_R 1 MVQKAHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIKD- 79 (97)
T ss_dssp --CCSCCSSTTCTTTSCCCTTTCSSCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEE-
T ss_pred CCCCCCCCcCCChhhhcCCccccCCCcHHHHHHHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEEe-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccceEEEEeeccccccC
Q psy2355 373 VRTRIIPKRINVRIEHIKHSK 393 (452)
Q Consensus 373 v~~~~~~Kri~v~~eHik~sk 393 (452)
+| ++|||||||||||||+
T Consensus 80 -~g--~~Kri~vrieHik~~~ 97 (97)
T 3j21_R 80 -GS--KVKTLFIHPVHLRPQK 97 (97)
T ss_dssp -TT--EEEEEEECGGGEEECC
T ss_pred -CC--cceEEEECHHHccccC
Confidence 44 6999999999999985
No 26
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=100.00 E-value=2.2e-46 Score=315.46 Aligned_cols=96 Identities=26% Similarity=0.325 Sum_probs=93.1
Q ss_pred ccccccccccccccccCccccCCCCCcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeec
Q psy2355 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRV 373 (452)
Q Consensus 294 mHnSkGYRr~TR~mfsR~fR~~g~~pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v 373 (452)
|.+|+|+|++||+||||+||+||++||++||++|++||+||||+||||||||||+|||||||+||||||+||||+||||+
T Consensus 1 m~~s~G~R~~TR~~fsr~fR~~G~~pls~~m~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk~v 80 (96)
T 1vq8_Q 1 MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGG 80 (96)
T ss_dssp -CCCCSTTTTCTTTTSCCGGGCSSCCSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETT
T ss_pred CCCCCCccccchHhhCCCccccCCCCHHHHHHHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEeecC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeeccccccC
Q psy2355 374 RTRIIPKRINVRIEHIKHSK 393 (452)
Q Consensus 374 ~~~~~~Kri~v~~eHik~sk 393 (452)
++ |||||||||||||+
T Consensus 81 k~----Kri~vr~eHik~sk 96 (96)
T 1vq8_Q 81 KE----KTIIVTAAHLRRQE 96 (96)
T ss_dssp EE----EEEEECGGGEEECC
T ss_pred CC----cEEEeCHhHcccCC
Confidence 95 69999999999986
No 27
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=61.99 E-value=9.7 Score=30.04 Aligned_cols=58 Identities=22% Similarity=0.391 Sum_probs=41.2
Q ss_pred CcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeecccccc
Q psy2355 319 PLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHS 392 (452)
Q Consensus 319 pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~s 392 (452)
|.+..-+.|++||-|-+.. | .|.|.||-|+.|.+.-+- +++++- .+-|.|.+..++.+
T Consensus 10 p~~~LrK~F~~GDHVkVi~------G----~~~getGlVV~v~~d~v~-v~SD~t-----~~Ei~V~~~dL~~~ 67 (69)
T 2do3_A 10 PAQELRKYFKMGDHVKVIA------G----RFEGDTGLIVRVEENFVI-LFSDLT-----MHELKVLPRDLQLC 67 (69)
T ss_dssp CCCCCCSSCCTTCEEEESS------S----TTTTCEEEEEEECSSCEE-EEESSS-----CSEEEECTTSEEES
T ss_pred cHHHceeeccCCCeEEEec------c----EEcCceEEEEEEeCCEEE-EEeCCC-----CCEEEEEhHHhhhh
Confidence 5555557799999987632 3 688999999999987544 455542 46677777776543
No 28
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=49.80 E-value=12 Score=32.65 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=26.3
Q ss_pred hccCCCEEEEeccCc-cccCcccccccCCCceeeeee
Q psy2355 326 VYKVGDIVDIKGHGA-VQKGMPFKDYHGKTGRVFNVT 361 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~-v~kGmPhk~yhGktG~V~~v~ 361 (452)
.|++||.|-++-... -|--+| .+=.||||+|.-+.
T Consensus 36 rF~vGDrVrvr~~~p~gHtRlP-~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 36 KFNVGDRVRIKDLPDLFYTRTM-TYTRGATGTIVRLV 71 (126)
T ss_dssp SSCTTCEEEECCCCCSSCCSSC-GGGTTCEEEEEEEE
T ss_pred ccCCCCEEEEccCCCCCceecc-HHhCCCEEEEEEEe
Confidence 489999999986543 455566 56789999997665
No 29
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=49.25 E-value=7.3 Score=33.45 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=33.4
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccccccC
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSK 393 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~sk 393 (452)
.+++||.|-|.. | .+-||+|.|..|-.. +++++...||+.-.|+|++.
T Consensus 15 ~IkkGD~V~Vi~-G---------kdKGk~GkV~~V~~~----------~~~V~VEGvN~~kkh~kp~~ 62 (115)
T 2zjr_R 15 HFKKGDTVIVLS-G---------KHKGQTGKVLLALPR----------DQKVVVEGVNVITKNVKPSM 62 (115)
T ss_dssp SSCTTSEEECCS-S---------SSTTCEEEEEEEETT----------TTEEEESSSCBCCCCCCTTS
T ss_pred cccCCCEEEEeE-c---------CCCCcEEEEEEEECC----------CCEEEEeCcEeEEEecCCCc
Confidence 578999997743 2 267999999987654 34455555677777888763
No 30
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=47.48 E-value=9.3 Score=32.62 Aligned_cols=49 Identities=27% Similarity=0.431 Sum_probs=34.0
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccccccCC
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKC 394 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~sk~ 394 (452)
..++||.|-|. -| .+-||+|.|..|-.. +++++...||+.-.|+|++..
T Consensus 6 ~IkkGD~V~Vi-~G---------kdKGk~GkV~~V~~~----------~~~ViVEGvN~~kkh~kp~~~ 54 (110)
T 3v2d_Y 6 HVKKGDTVLVA-SG---------KYKGRVGKVKEVLPK----------KYAVIVEGVNIVKKAVRVSPK 54 (110)
T ss_dssp SCCTTSEEEEC-SS---------TTTTCEEEEEEEEGG----------GTEEEETTSSEEEEECCSSSS
T ss_pred ccCCCCEEEEe-Ec---------CCCCeEeEEEEEECC----------CCEEEEeCEEEEEEEeCCCcc
Confidence 46899999664 22 377999999987654 344445556777788888654
No 31
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=44.67 E-value=23 Score=31.82 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=41.3
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEe---ec-cccccceEE---EEeeccccccCChHHH
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNK---RV-RTRIIPKRI---NVRIEHIKHSKCREDF 398 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk---~v-~~~~~~Kri---~v~~eHik~sk~~~~f 398 (452)
..++||.|-|. -| .|-|++|.|..|-..-.-|+|.. .- .|...+--| ||-+--.+--+.|...
T Consensus 48 ~IkKGD~V~Vi-~G---------kdKGk~GkVl~V~~kk~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~k~dk~R~~~ 117 (150)
T 3iz5_Y 48 PIRKDDEVQVV-RG---------SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAI 117 (150)
T ss_dssp ECCSSSEEEEC-SS---------TTTTCEEEEEEEETTTTEEEETTCEEECTTSCEEECCBCGGGEEEEECCCCSHHHHH
T ss_pred ccCCCCEEEEe-ec---------CCCCccceEEEEEcCCCEEEEeCcEEEeCCCCEEecccchHHEEEEcccCChHHHHH
Confidence 35799999653 22 37899999999976544444421 10 111111111 3334444455667777
Q ss_pred HHHHhHhHHHHHHHHHcC
Q psy2355 399 LKRVKENELKRKEAKEKG 416 (452)
Q Consensus 399 l~rvk~nd~~k~eak~~g 416 (452)
|+|-...-+. .|++|
T Consensus 118 lerk~~~~~~---~~~k~ 132 (150)
T 3iz5_Y 118 LDRKASGRAA---DKAKG 132 (150)
T ss_dssp HHHHHHHHHH---HHC--
T ss_pred hccchhhhhh---ccccc
Confidence 7776554443 45566
No 32
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=42.11 E-value=9.4 Score=35.63 Aligned_cols=47 Identities=32% Similarity=0.589 Sum_probs=35.0
Q ss_pred hccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeecccccc
Q psy2355 326 VYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHS 392 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~s 392 (452)
.+++||.|-|.. | .+-||+|.|..|-.. +++++...||+.-.|+|++
T Consensus 68 kIkKGD~V~VIa-G---------kDKGK~GkVl~V~~k----------~~rViVEGVN~vkKH~Kp~ 114 (191)
T 3bbo_W 68 HVKVGDTVKVIS-G---------GEKGKIGEISKIHKH----------NSTVIIKDLNFKTKHVKSK 114 (191)
T ss_dssp CSCCSSCEEECS-S---------SSTTCCCSCCCCCSS----------SCCCCCSSCCCCCCBCCSC
T ss_pred eeecCCEEEEee-c---------CCCCceEEEEEEECC----------CCEEEEeCCEEEEEecCCc
Confidence 578999997743 2 267999999987643 4667777788888888875
No 33
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=41.26 E-value=18 Score=34.28 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=26.4
Q ss_pred hccCCCEEEEeccCc-cccCcccccccCCCceeeeee
Q psy2355 326 VYKVGDIVDIKGHGA-VQKGMPFKDYHGKTGRVFNVT 361 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~-v~kGmPhk~yhGktG~V~~v~ 361 (452)
.|++||.|-++-.+. -|--+| .+=.||||+|.-+.
T Consensus 130 ~F~vGd~Vrv~~~~~~~HtR~P-~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 130 RFAVGDKVRVLNKNPVGHTRMP-RYTRGKVGTVVIDH 165 (219)
T ss_dssp CCCTTCEEEECCCCCSSCCCSC-GGGTTCEEEEEEEE
T ss_pred CCCCCCEEEECCCCCCCccccc-HHHCCCeeEEEEEe
Confidence 489999999976554 455566 56789999997664
No 34
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=40.00 E-value=20 Score=34.24 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=26.0
Q ss_pred hccCCCEEEEeccCc-cccCcccccccCCCceeeeee
Q psy2355 326 VYKVGDIVDIKGHGA-VQKGMPFKDYHGKTGRVFNVT 361 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~-v~kGmPhk~yhGktG~V~~v~ 361 (452)
.|++||.|-++-... -|--+| .+=.||||+|.-+.
T Consensus 138 ~F~vGd~Vrv~~~~~~~HtR~P-~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 138 KFKEGDVVRFSTASPKGHARRA-RYVRGKTGTVVKHH 173 (226)
T ss_dssp SCCTTCEEEECCCCCSSCCCCC-GGGTTCEEEEEEEE
T ss_pred cCCCCCeEEEccCCCCCccccc-HHhCCCeEEEEEEe
Confidence 488999999986544 445555 56689999988665
No 35
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=39.19 E-value=21 Score=34.17 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=26.5
Q ss_pred hccCCCEEEEeccCc-cccCcccccccCCCceeeeee
Q psy2355 326 VYKVGDIVDIKGHGA-VQKGMPFKDYHGKTGRVFNVT 361 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~-v~kGmPhk~yhGktG~V~~v~ 361 (452)
.|++||.|-++-.+. -|--+| .+=.||||+|.-+.
T Consensus 141 ~F~vGd~Vrv~~~~~~~HtR~P-~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 141 RFKVGERIKTKNIHPTGHTRFP-RYARDKYGVIDEVY 176 (229)
T ss_dssp SCCTTCEEEECCCCCSSCCSCC-GGGTTCEEEEEEEE
T ss_pred CCCCCCEEEECCCCCCCcccCc-HHHCCCeeEEEEEe
Confidence 489999999976554 455566 56789999997764
No 36
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=38.42 E-value=17 Score=30.63 Aligned_cols=49 Identities=33% Similarity=0.331 Sum_probs=33.6
Q ss_pred hhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccccccCC
Q psy2355 325 KVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKC 394 (452)
Q Consensus 325 ~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~sk~ 394 (452)
...++||.|-|. -| .+-||+|.|..|-.. --|+| ..||+.-.|.|++..
T Consensus 2 ~~IkkGD~V~Vi-~G---------kdKGk~GkV~~V~~~-~~ViV----------eGvN~~kkh~kp~~~ 50 (102)
T 3r8s_U 2 AKIRRDDEVIVL-TG---------KDKGKRGKVKNVLSS-GKVIV----------EGINLVKKHQKPVPA 50 (102)
T ss_dssp CSSCSSCEEEEC-SS---------SSTTCEEEEEEEETT-TEEEE----------TTCSEEEEEECCCSS
T ss_pred CCccCCCEEEEe-Ec---------CCCCeeeEEEEEEeC-CEEEE----------eCeEEEEeccccCcc
Confidence 457899999664 22 377999999988765 44444 345666678877653
No 37
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=31.34 E-value=38 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=25.4
Q ss_pred ccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccccccC
Q psy2355 350 YHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSK 393 (452)
Q Consensus 350 yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHik~sk 393 (452)
+-||+|.|..|-.. +++++...+|+.-.|+|++.
T Consensus 11 dKGk~GkV~~V~~~----------~~~ViVeGvN~~kkh~kp~~ 44 (96)
T 2ftc_N 11 DAGKQGKVVQVIRQ----------RNWVVVGGLNTHYRYIGKTM 44 (96)
T ss_pred CCCcEEEEEEEECC----------CCEEEEeCCEEEEEEcCCCC
Confidence 67999999987654 34555667888888998864
No 38
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=28.27 E-value=37 Score=32.05 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=23.7
Q ss_pred hhccCCCEEEEeccC-ccccCcccccccCCCcee
Q psy2355 325 KVYKVGDIVDIKGHG-AVQKGMPFKDYHGKTGRV 357 (452)
Q Consensus 325 ~~yk~Gd~VdIk~~~-~v~kGmPhk~yhGktG~V 357 (452)
..|++||.|-++-.. .-|--+| .+=.||||+|
T Consensus 121 ~~F~vGd~Vrv~~~~~~gHtR~P-~YvRGk~G~I 153 (212)
T 3a8g_B 121 TTFEVGQRVRVRDEYVPGHIRMP-AYCRGRVGTI 153 (212)
T ss_dssp CCCCTTCEEEECCCCCSSCCSCC-GGGTTCEEEE
T ss_pred cccCCCCeEEEecCCCCCccccc-HHHCCCeEEE
Confidence 358999999998653 3455566 5668999988
No 39
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=25.23 E-value=59 Score=30.46 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=24.7
Q ss_pred hccCCCEEEEeccCc-cccCcccccccCCCceeeeeec
Q psy2355 326 VYKVGDIVDIKGHGA-VQKGMPFKDYHGKTGRVFNVTQ 362 (452)
Q Consensus 326 ~yk~Gd~VdIk~~~~-v~kGmPhk~yhGktG~V~~v~~ 362 (452)
.|++||.|-++-... =|--+| .+=.||+|+|..+.+
T Consensus 118 ~F~vGd~Vrv~~~~~~gHtRlP-~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 118 GFKLGQRVHVKNEFVPGHTRFP-AYIRGKAGVVVGISP 154 (206)
T ss_dssp CCCTTCEEEECCCCCSSCCSSC-GGGTTCEEEEEEECC
T ss_pred CCcCCCEEEeCCCCCCCccccc-HhhcCCeeEEEEEec
Confidence 389999999886433 233344 455789988886654
No 40
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.26 E-value=1.1e+02 Score=22.57 Aligned_cols=51 Identities=10% Similarity=0.255 Sum_probs=32.9
Q ss_pred hhccCCCEEEEeccCccccCcccccccCCCceeeeeeccEEEEEEEeeccccccceEEEEeeccc
Q psy2355 325 KVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHI 389 (452)
Q Consensus 325 ~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~~~a~gv~vnk~v~~~~~~Kri~v~~eHi 389 (452)
..|++||.|-|.--| |.|-+|+|..+.+.-+-|.|.-- |+ ...+.+....|
T Consensus 6 ~~f~~GD~V~V~~Gp----------f~g~~G~V~evd~e~v~V~v~~f--g~--~tpvel~~~qv 56 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE----------LINLQGKILSVDGNKITIMPKHE--DL--KDMLEFPAQEL 56 (59)
T ss_dssp SSCCTTSEEEECSST----------TTTCEEEECCCBTTEEEEEECCS--SC--CSCEEEETTTE
T ss_pred ccCCCCCEEEEeecC----------CCCCEEEEEEEeCCEEEEEEEec--CC--CceEEEcHHHE
Confidence 458899999996544 56788999999887555555322 22 23555554444
No 41
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=21.66 E-value=57 Score=25.92 Aligned_cols=38 Identities=32% Similarity=0.592 Sum_probs=27.9
Q ss_pred CcchhhhhccCCCEEEEeccCccccCcccccccCCCceeeeee
Q psy2355 319 PLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVT 361 (452)
Q Consensus 319 pl~~~~~~yk~Gd~VdIk~~~~v~kGmPhk~yhGktG~V~~v~ 361 (452)
|++.| -.|..|+.|.|.-+ -..|||| +-|+-|.|...-
T Consensus 5 pmPKy-WsYp~gl~VeIN~N--AkygcPh--hVGrkGkIie~~ 42 (84)
T 2heq_A 5 PLPKY-WSYPVGLAVEINNN--ARYGCPH--HVGRKGKIIEHL 42 (84)
T ss_dssp CCCSS-CCSCTTCEEEECTT--CTTTSTT--CCSSEEEEEEEC
T ss_pred CCccc-cccCCCCEEEEcCC--cccCCcc--ccccccchhhhh
Confidence 55555 36899999998544 5889998 568888776543
Done!