RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2355
(452 letters)
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide
biosynthesis, transferase; HET: UMP CB3; 2.08A
{Filobasidiella neoformans}
Length = 317
Score = 454 bits (1170), Expect = e-160
Identities = 134/243 (55%), Positives = 170/243 (69%), Gaps = 10/243 (4%)
Query: 57 SPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGA-QMRFDLTNGT 115
+ D ++ +E QYL L+ +II G + DRTG GT++LF RF L + T
Sbjct: 3 ATIDDQEKNQRSNPDHEEYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNT 62
Query: 116 FPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGD 175
PLLTTKRVF +GV+ ELLWF+ G T+AK LS +GV IWD N ++E+L+ +GL R+EGD
Sbjct: 63 LPLLTTKRVFLRGVIAELLWFVSGCTDAKMLSSQGVGIWDGNGSKEFLEKVGLGHRREGD 122
Query: 176 LGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKM 235
LGPVYGFQWRH+GAEY D DY +G+DQLQ +I+TIK NP DRRII+ AWNP D+P M
Sbjct: 123 LGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLM 182
Query: 236 ALPPCHCLAQFYVA---------DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVT 286
ALPPCH QF+V+ KLSC +YQRS D+GLGVPFNIASY+LLT+MIA +T
Sbjct: 183 ALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALIT 242
Query: 287 GLQ 289
+
Sbjct: 243 DTE 245
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME;
2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Length = 355
Score = 454 bits (1171), Expect = e-160
Identities = 160/239 (66%), Positives = 187/239 (78%), Gaps = 1/239 (0%)
Query: 51 NLLPIFSPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFD 110
L P E QYL + I++ G +K DRTG GTLS+FG Q R+
Sbjct: 49 ELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYS 108
Query: 111 LTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVD 170
L + FPLLTTKRVFWKGV+EELLWFIKGSTNAKELS KGVKIWD N +R++LDS+G
Sbjct: 109 LRDE-FPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFST 167
Query: 171 RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPI 230
R+EGDLGPVYGFQWRH+GAEY+DM +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP
Sbjct: 168 REEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPR 227
Query: 231 DMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
D+P MALPPCH L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 228 DLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 286
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C*
1j3j_C* 3dg8_C* 3dga_C*
Length = 328
Score = 453 bits (1168), Expect = e-160
Identities = 133/234 (56%), Positives = 172/234 (73%), Gaps = 1/234 (0%)
Query: 56 FSPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGT 115
P + E QYL+++ I+ G+K+SDRTGVG LS FG M+FDL+
Sbjct: 27 IHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQY- 85
Query: 116 FPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGD 175
FPLLTTK++F +G++EELLWFI+G TN L +K V+IW+ N TRE+LD+ L R+ D
Sbjct: 86 FPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVND 145
Query: 176 LGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKM 235
LGP+YGFQWRH+GAEY +M+ +Y ++G+DQL+NIIN IK +P RRI++CAWN D+ +M
Sbjct: 146 LGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQM 205
Query: 236 ALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
ALPPCH L QFYV DGKLSC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 206 ALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 259
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase,
nucleotide biosynthesis; 1.56A {Homo sapiens} PDB:
3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A
3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 2rd8_A* 2rda_A
3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* 1juj_A* 3egy_X* ...
Length = 295
Score = 451 bits (1162), Expect = e-159
Identities = 158/217 (72%), Positives = 185/217 (85%), Gaps = 1/217 (0%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EE
Sbjct: 11 GELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDE-FPLLTTKRVFWKGVLEE 69
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
LLWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+
Sbjct: 70 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 129
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
DM +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +
Sbjct: 130 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 189
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 190 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 226
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex,
transferase; HET: UMP F89; 1.90A {Pneumocystis carinii}
SCOP: d.117.1.1 PDB: 1ci7_A*
Length = 297
Score = 449 bits (1158), Expect = e-158
Identities = 143/227 (62%), Positives = 172/227 (75%), Gaps = 7/227 (3%)
Query: 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFG-AQMRFDLTNGTFPLLTTKRVFWKG 128
V +EQQYL+L+ II G + DRTG GTLS+F + ++F L N TFPLLTTKRVF +G
Sbjct: 2 VNAEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRG 61
Query: 129 VVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYG 188
V+EELLWFI+G T++ +L +K + IWD N +REYLDSIGL R+EGDLGP+YGFQWRH+G
Sbjct: 62 VIEELLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFG 121
Query: 189 AEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYV 248
AEY D T+Y QG+DQL NII I+T+P DRR+I+ AWNP D+ KMALPPCH QFYV
Sbjct: 122 AEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYV 181
Query: 249 A------DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
+LSCQLYQRS DMGLGVPFNIASY+LLT MIAHV L
Sbjct: 182 HIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLD 228
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 457 bits (1177), Expect = e-158
Identities = 144/217 (66%), Positives = 177/217 (81%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
+E+QYL L+D+II+ G+ K DRTGVGTLS+FGAQMRF L N PLLTTKRVFW+GV EE
Sbjct: 236 EEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEE 295
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
LLWF++G T AK+LSDKGV IWD N +R +LDS GL + +E DLGPVYGFQWRH+GA Y
Sbjct: 296 LLWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYT 355
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
+Y QG+DQ++ I+ T+KTNP+DRR++ AWNP +P+MALPPCH LAQFYV++G+
Sbjct: 356 HHDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGE 415
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS DMGLGVPFNIASY+LLT +IA TGL+
Sbjct: 416 LSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLR 452
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode,
methyltransferase, nucleotide biosynt transferase,
structural genomics; 2.20A {Encephalitozoon cuniculi}
Length = 294
Score = 448 bits (1154), Expect = e-158
Identities = 131/222 (59%), Positives = 171/222 (77%), Gaps = 1/222 (0%)
Query: 68 TSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWK 127
+ E QYL L+ I++ G ++ DRTG GTLS+FGA MRF L + TFPLLTT+RVF++
Sbjct: 3 QDPRHPEHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYR 62
Query: 128 GVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHY 187
GVVEELL+F++G T++K L KGV+IW+ N +++L S+G+ DR+EGDLGP+YGFQWRH+
Sbjct: 63 GVVEELLFFLRGETDSKVLEKKGVRIWEKNGAKQFLQSVGI-DREEGDLGPIYGFQWRHF 121
Query: 188 GAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFY 247
GA Y+ + Y +G+DQ+ + I I+ NP RRI++ AWNP D+ MALPPCH L QF
Sbjct: 122 GARYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGSMALPPCHVLFQFN 181
Query: 248 VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
V DGKLSC +YQRS DMGLGVPFNIASYSLLT ++AH+TGLQ
Sbjct: 182 VTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQ 223
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A
{Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 456 bits (1175), Expect = e-158
Identities = 135/217 (62%), Positives = 164/217 (75%), Gaps = 1/217 (0%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
+E QYL +L ++ G K +RTG S FG QMRFDL+ FPLLTTK+V + ++EE
Sbjct: 231 EEFQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRS-FPLLTTKKVALRSIIEE 289
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
LLWFIKGSTN +L K V+IW+ N R++LD G DR+E DLGP+YGFQWRH+GAEY
Sbjct: 290 LLWFIKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYL 349
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
DM DYT +GIDQL IIN IKTNPNDRR+I+C+WN D+ KMALPPCHC QFYV+D K
Sbjct: 350 DMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNK 409
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC ++QRS D+GLGVPFNIASYS+LT M+A V GL
Sbjct: 410 LSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLG 446
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 454 bits (1169), Expect = e-156
Identities = 133/234 (56%), Positives = 172/234 (73%), Gaps = 1/234 (0%)
Query: 56 FSPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGT 115
P + E QYL+++ I+ G+K+SDRTGVG LS FG M+FDL+
Sbjct: 307 IHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQY- 365
Query: 116 FPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGD 175
FPLLTTK++F +G++EELLWFI+G TN L +K V+IW+ N TRE+LD+ L R+ D
Sbjct: 366 FPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVND 425
Query: 176 LGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKM 235
LGP+YGFQWRH+GAEY +M+ +Y ++G+DQL+NIIN IK +P RRI++CAWN D+ +M
Sbjct: 426 LGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQM 485
Query: 236 ALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
ALPPCH L QFYV DGKLSC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 486 ALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 539
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 449 bits (1158), Expect = e-155
Identities = 123/218 (56%), Positives = 155/218 (71%), Gaps = 2/218 (0%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
E QYL LL ++++ G + +RTG+ T S+FG MRFD+ FPLLTTK+V + + EE
Sbjct: 236 YEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRES-FPLLTTKKVAIRSIFEE 294
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
L+WFIKG TN L +K V IW N ++EYL+ IGL R+E DLGP+YGFQWRHY EYK
Sbjct: 295 LIWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYK 354
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVA-DG 251
M DYT G+DQL +I T+K NP DRR I+ AWNP + +MALPPCH L+Q+YV D
Sbjct: 355 TMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDN 414
Query: 252 KLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 415 CLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 452
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics,
seattle S genomics center for infectious disease,
transferase; HET: CIT; 1.65A {Burkholderia
thailandensis}
Length = 327
Score = 401 bits (1032), Expect = e-139
Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 29/245 (11%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
+QYL L+ I+ TG +S+RTG+ T+ + GA +RFDL G FP +TTK++ +K + E
Sbjct: 4 SMKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQG-FPAVTTKKLAFKSAIGE 62
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGA--- 189
L+ F++ + +A E G K+WD N+ R DLG VYG QWR +
Sbjct: 63 LVGFLRATRSAAEFRALGCKVWDANANENAQWLANPYRRGADDLGDVYGVQWRRWPGYKV 122
Query: 190 -----------------------EYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCA 226
E + IDQL++ ++TI +P+ RRI+
Sbjct: 123 LDAHADAQIADATSRGFRIVARFEEGGADKVLLHKAIDQLRDCLDTIVRDPSSRRILFHG 182
Query: 227 WNPIDMPKMALPPCHCLAQFY--VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAH 284
WNP + ++ALP CH L QF V ++S LY RS D+GLG PFN+A + L ++
Sbjct: 183 WNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGR 242
Query: 285 VTGLQ 289
+TG
Sbjct: 243 LTGYS 247
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG; HET: UMP;
2.71A {Staphylococcus aureus}
Length = 321
Score = 395 bits (1016), Expect = e-137
Identities = 110/258 (42%), Positives = 145/258 (56%), Gaps = 47/258 (18%)
Query: 70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGV 129
+ + + Y L +++++ G+ ++DRT GT+S FG Q+RFDL+ G FPLLTTK+V +K V
Sbjct: 5 LNSFDAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKG-FPLLTTKKVSFKLV 63
Query: 130 VEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVD------------------- 170
ELLWFIKG TN + L IW+ + Y+ S
Sbjct: 64 ATELLWFIKGDTNIQYLLKYNNNIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQ 123
Query: 171 -------------------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIIN 211
++ GDLG VYG QWR + D DQL+ +I
Sbjct: 124 YKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRD--------WVDKDGNHFDQLKTVIE 175
Query: 212 TIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFN 271
IK NP+ RR I+ AWNP ++ MALPPCH + QFYV DGKLSCQLYQRSAD+ LGVPFN
Sbjct: 176 QIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFN 235
Query: 272 IASYSLLTYMIAHVTGLQ 289
IASY+LLT++IA GL+
Sbjct: 236 IASYALLTHLIAKECGLE 253
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP,
antifolate, high-resolution, ternar complex, beta sheet,
alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia
coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A*
1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A*
1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A*
3bhl_A* 3bhr_A* 3tms_A ...
Length = 264
Score = 390 bits (1004), Expect = e-136
Identities = 108/215 (50%), Positives = 143/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD E+ D + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWD-----EWAD-------ENGDLGPVYGKQWRAWPT----- 103
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 104 ---PDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural
center for infectious DISE brucellosis, orchitis,
epididymitis, mastitis; 2.20A {Brucella melitensis}
Length = 360
Score = 392 bits (1009), Expect = e-135
Identities = 116/234 (49%), Positives = 151/234 (64%), Gaps = 21/234 (8%)
Query: 56 FSPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGT 115
+ ++ + + YL LL ++ G + DRTG GT S+FG QMRFDL G
Sbjct: 79 LDMEDNDIIEAHREQIGGMRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEG- 137
Query: 116 FPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGD 175
FP+LTTK++ + ++ ELLWF+KG TN L + GV IWD E+ D + GD
Sbjct: 138 FPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKENGVTIWD-----EWAD-------ENGD 185
Query: 176 LGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKM 235
LGPVYG+QWR + A + IDQ+ N++ + TNP RR+I+ AWNP + +M
Sbjct: 186 LGPVYGYQWRSWPAP--------DGRHIDQIANLLKMLHTNPQSRRLIVSAWNPALVDEM 237
Query: 236 ALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
ALPPCHCL QFYVA+G+LSCQLYQRSAD+ LGVPFNIASY+LLT MIA VTGL+
Sbjct: 238 ALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLK 291
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase,
methyltransferase, nucleot biosynthesis; HET: 7C1 UMP;
2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A*
1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A*
3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A*
1tsz_A 1tdb_A* 1tda_A* ...
Length = 316
Score = 390 bits (1003), Expect = e-135
Identities = 116/254 (45%), Positives = 142/254 (55%), Gaps = 47/254 (18%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVD----------------------- 170
LWF+ G TN + L IWD + +++ S
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 171 ---------------RKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKT 215
K GDLG VYG QWR + IDQL ++I IKT
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTS--------KGDTIDQLGDVIEQIKT 173
Query: 216 NPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASY 275
+P RR+I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY
Sbjct: 174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASY 233
Query: 276 SLLTYMIAHVTGLQ 289
+LLT+++AH GL+
Sbjct: 234 ALLTHLVAHECGLE 247
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural
genomics, TB structural GEN consortium, TBSGC,
transferase; HET: UMP SPM; 2.50A {Mycobacterium
tuberculosis}
Length = 264
Score = 388 bits (998), Expect = e-135
Identities = 110/215 (51%), Positives = 144/215 (66%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
Y LL +++TG KSDRTG GT SLFG QMR+DL+ G FPLLTTK+V +K V ELL
Sbjct: 3 TPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAG-FPLLTTKKVHFKSVAYELL 61
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G +N L + GV IWD ++ G+LGP+YG QWR + A
Sbjct: 62 WFLRGDSNIGWLHEHGVTIWDEWAS------------DTGELGPIYGVQWRSWPA----- 104
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ + IDQ+ ++ ++T+P+ RRII+ AWN ++ +MALPPCH QFYVADG+LS
Sbjct: 105 ---PSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLS 161
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRSAD+ LGVPFNIASY+LLT+M+A GL
Sbjct: 162 CQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLS 196
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A
{Enterobacteria phage T4} SCOP: d.117.1.1
Length = 286
Score = 388 bits (999), Expect = e-135
Identities = 96/222 (43%), Positives = 135/222 (60%), Gaps = 25/222 (11%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QY L+ I + G++ DRTG GT++LFG+++R+DLT G FP +TTK++ WK + EL+
Sbjct: 2 KQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKG-FPAVTTKKLAWKACIAELI 60
Query: 135 WFIKGSTNAKELS-------DKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHY 187
WF+ GSTN +L +G +WD N + D G+LGP+YG QWR +
Sbjct: 61 WFLSGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKDL----GYHSGELGPIYGKQWRDF 116
Query: 188 GAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFY 247
G G+DQ+ +I+ IK PNDRR I+ AWNP ++ MALPPCH QF
Sbjct: 117 G-------------GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFN 163
Query: 248 VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
V +G L Q YQRS D+ LG+PFNIASY+ L +++A + L
Sbjct: 164 VRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLI 205
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A
{Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A
1bsp_A 1b02_A*
Length = 278
Score = 367 bits (945), Expect = e-127
Identities = 80/228 (35%), Positives = 115/228 (50%), Gaps = 32/228 (14%)
Query: 73 DEQQYLHLLDKIIKTGHKK----------SDRTGVGTLSLFGAQMRFDLTNGTFPLLTTK 122
++QY ++ II G SD T TLS+ QMRFD + P+LTTK
Sbjct: 3 FDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNSE--VPILTTK 60
Query: 123 RVFWKGVVEELLWFIKGSTN-AKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYG 181
+V WK ++ELLW + +N +L+ GV IWD +++G +G YG
Sbjct: 61 KVAWKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQW------------KQEDGTIGHAYG 108
Query: 182 FQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCH 241
FQ + +DQ+ +++ +K NP+ RR I WNP ++ MAL PC
Sbjct: 109 FQLGKK-------NRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCV 161
Query: 242 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
Q+YV GKL ++ RS DM LG PFN+ Y++L MIA VTG +
Sbjct: 162 YETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYE 209
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing
complex, transferase; HET: DCM; 1.60A {Enterobacteria
phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Length = 246
Score = 330 bits (849), Expect = e-112
Identities = 42/229 (18%), Positives = 76/229 (33%), Gaps = 36/229 (15%)
Query: 68 TSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWK 127
S ++ L +K D+TGV T+ + GA D F L + +
Sbjct: 2 ISDSMTVEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFI-FGALNDEYI--- 57
Query: 128 GVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHY 187
EL W+ S K++ + KIW +G++ YG+
Sbjct: 58 --QRELEWYKSKSLFVKDIPGETPKIWQQV------------ASSKGEINSNYGWAI--- 100
Query: 188 GAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP-----IDMPKMALPPCHC 242
+++ Q + + NP+ RR IM P + M+ C
Sbjct: 101 ----------WSEDNYAQYDMCLAELGQNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTN 150
Query: 243 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRT 291
Q+ + D K++ + RS D+ G + A + + +
Sbjct: 151 TVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDS 199
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 160
Score = 243 bits (621), Expect = 8e-80
Identities = 112/160 (70%), Positives = 130/160 (81%), Gaps = 1/160 (0%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
MTN+KG RRGTR +FSRPFR+HG +PL+ YM++YK GDIVDIKG G VQKGMP K YHGK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAK 413
TGRV+NVTQHAVG+IVNK+V+ +I+ KRINVRIEHIKHSK R+ FLKRVKEN+ K+KEAK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 414 EKGIKVNLKRQPAQPRPAHIVSGR-TAPVMLAPIPYEFIA 452
EKG V LKR A PR AH V P +L PIPYEF+A
Sbjct: 121 EKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYEFMA 160
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U
3o58_T 3o5h_T 3u5e_T 3u5i_T
Length = 160
Score = 239 bits (611), Expect = 3e-78
Identities = 97/159 (61%), Positives = 119/159 (74%), Gaps = 1/159 (0%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
M S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK +G++QKGMP K Y GK
Sbjct: 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAK 413
TG V+NVT+ +VGVI+NK V R + KR+N+R+EHIKHSKCR++FL+RVK N KR EAK
Sbjct: 61 TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120
Query: 414 EKGIKVNLKRQPAQPRPAHIVSGR-TAPVMLAPIPYEFI 451
+G+ V LKRQPAQPR + IVS P LAP+PYE
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYETF 159
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_P 4a1c_P 4a1e_P
Length = 157
Score = 232 bits (594), Expect = 8e-76
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 3/156 (1%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
MT+S GYRR TR F++ ++ G + +S Y+ YKVG+ VDI G+ KGMP+K YHG+
Sbjct: 1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGR 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAK 413
TG+VFNV ++GVIV++ V R I KR++V+IEH++ S + KR + N+ + E
Sbjct: 61 TGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPSNVKTALSKRYQANDQAKAEGN 120
Query: 414 EKGIKVNLKRQPAQPRPAHIVSGRT---APVMLAPI 446
+ G +V+ KR P QP A V G P + I
Sbjct: 121 KAGKRVSTKRNPGQPLEAVQVQGAVNFQHPKVFREI 156
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_U
Length = 164
Score = 232 bits (594), Expect = 1e-75
Identities = 83/159 (52%), Positives = 114/159 (71%), Gaps = 1/159 (0%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
M G R TRDLF+RPFR+ G IPL+ Y++ YKVG+ VD+K +GAV KGMP K YHG+
Sbjct: 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAK 413
TGRV+NVT+ A+GV +NK+V RII KRI+VR+EH++ S+C E+FL+R N+ + EAK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAK 120
Query: 414 EKGIKVNLKRQPAQPRPAHIVSGRTAPVMLAPIPYEFIA 452
+G ++ KRQPA P+P +V G T + PIPY+ +
Sbjct: 121 ARGEVISTKRQPAGPKPGFMVEGTT-IETVTPIPYDVVN 158
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_Q
Length = 116
Score = 178 bits (453), Expect = 3e-55
Identities = 62/113 (54%), Positives = 77/113 (68%)
Query: 297 SKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGR 356
S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK +G++QKGMP K Y GKTG
Sbjct: 3 SHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGV 62
Query: 357 VFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKR 409
V+NVT+ +VGVI+NK V R + KR+N+R+EHIKHSK
Sbjct: 63 VYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKAAAAAAAAAAAAAAAA 115
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q*
1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q*
1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q*
1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Length = 96
Score = 157 bits (398), Expect = 2e-47
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 294 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK 353
M +S G GTR R GT P ++ + G+ V +K +V G + G+
Sbjct: 1 MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQ 60
Query: 354 TGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSK 393
TG V A V + + K I V H++ +
Sbjct: 61 TGTVEGKQGDAYKVDIVDGGK----EKTIIVTAAHLRRQE 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 5e-07
Identities = 79/505 (15%), Positives = 141/505 (27%), Gaps = 220/505 (43%)
Query: 16 TSVQTDEQQYL-----HLL--------DKII---KTIIR--YQ--------KTLHHSHTM 49
+ E YL H L D + K +I+ + +
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 50 FN--------LLPIFSPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLS 101
F L+ IF QG+ D Y L + +T H
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDD------------YFEELRDLYQTYH------------ 181
Query: 102 LFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKI--W--DPN 157
L+ K E L I+ + +A+++ +G+ I W +P+
Sbjct: 182 ---------------VLVGD---LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 158 ST--REYLDS-------IGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGID--QL 206
+T ++YL S IG++ Q HY K + G +L
Sbjct: 224 NTPDKDYLLSIPISCPLIGVI-------------QLAHYVVTAKLL-------GFTPGEL 263
Query: 207 QNIINTIKTNPNDRRIIMCA-------WNPIDMPKMALPPCHCLAQFYVADGKLSCQ--- 256
++ + + ++ W L F++ G + C
Sbjct: 264 RSYLKGATGHSQG--LVTAVAIAETDSWE--SFFVSVRKAITVL--FFI--G-VRCYEAY 314
Query: 257 --------LYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTS-----NMTNSK----- 298
+ + S + GVP + M++ ++ L + N TNS
Sbjct: 315 PNTSLPPSILEDSLENNEGVP---------SPMLS-ISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 299 --------GYRR----G-TRDLF-----------------SR-PFR-RHGTI-----PLS 321
G + G + L+ SR PF R P++
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 322 V-----YMKVYKVGDIVDIKGHGAVQKGMPF--KD-----YHGKTG---RVF--NVTQHA 364
+ D+ V+ + F KD Y G RV ++++
Sbjct: 425 SPFHSHLLV-----PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 365 VGVIVNKRVRTRIIPKRINVRIEHI 389
V I+ V+ + HI
Sbjct: 480 VDCIIRLPVK---WETTTQFKATHI 501
Score = 32.7 bits (74), Expect = 0.35
Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 90/222 (40%)
Query: 2 LESRLKGDN---PDQ--------NGTS--VQTDEQQYLHLLDKIIKTI----------IR 38
++ + N P NG V + Q L+ L+ ++ I
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 39 Y-QKTLHHSHTMFNLLPIFSPQGDNPDQNGTSVQTDEQQYLH--LL----DKIIKTGHKK 91
+ ++ L S+ F LP+ SP H LL D I
Sbjct: 409 FSERKLKFSNR-F--LPVASP-------------------FHSHLLVPASDLI------N 440
Query: 92 SDRTGVGTLSLFGAQMR---FDLTNGT-------------FPLLTTKRVFWKGVVE-ELL 134
D +S ++ +D +G+ + V W+ + +
Sbjct: 441 KDLVKNN-VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 135 WFIK----GSTNAKELSDK-----GVKI-----WDPNSTREY 162
+ G++ L+ + GV++ D N +Y
Sbjct: 500 HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.002
Identities = 61/452 (13%), Positives = 114/452 (25%), Gaps = 147/452 (32%)
Query: 44 HHSHTMFNLLPIFSPQGDNPDQNGTSVQTDEQQY------LHLLDKIIKTGHKKSDRTGV 97
HH H M +T E QY D + +
Sbjct: 2 HHHHHM-------------------DFETGEHQYQYKDILSVFEDAFVD------N---- 32
Query: 98 GTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPN 157
F + D+ K + K ++ ++ S +A + +
Sbjct: 33 -----FDCKDVQDMP---------KSILSKEEIDHII----MSKDAVSGTLRLFWTLLSK 74
Query: 158 STREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD---MFTDYTDQGIDQLQNIINTIK 214
+ V R Y F E + M Y +Q D+L N
Sbjct: 75 QEEMVQKFVEEVLRIN------YKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFA 127
Query: 215 TNPNDR-----RIIMCAWNPIDMPKMALPPCH--------CLAQFYVADGKLSCQLYQRS 261
R ++ + + +A K+ C+
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCK----- 179
Query: 262 ADMGLGVPF--NIASY----SLLTYM--IAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFR 313
M + F N+ + ++L + + + TS +S + + + R
Sbjct: 180 --MDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-LR 235
Query: 314 RHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGK---TGRVFNVTQHAVGVIVN 370
R + Y V +++ A F + K T R VT +
Sbjct: 236 RL--LKSKPYENCLLVLL--NVQNAKAWN---AF-NLSCKILLTTRFKQVTD-FLSAATT 286
Query: 371 KRVR--------------------------------TRIIPKRINVRIEHIKHSKCREDF 398
+ P+R+++ E I+ D
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 399 LKRVKENELKRKEAKEKGIKVNLKRQ-PAQPR 429
K V ++L I+ +L PA+ R
Sbjct: 347 WKHVNCDKLTTI------IESSLNVLEPAEYR 372
Score = 38.3 bits (88), Expect = 0.006
Identities = 78/532 (14%), Positives = 144/532 (27%), Gaps = 137/532 (25%)
Query: 12 DQNGTSVQ-----TDEQQYLHLLDKI----IKTIIRYQKTLHHSHTMFNLLPIFSP---- 58
+ VQ Y L+ I + + + + ++N +F+
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 59 ------------QGDNPDQN---------GTSVQT-----DEQQYLHLLDKI--IKTGHK 90
P +N G + + + KI + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 91 KSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKEL---S 147
S T + L Q+ + T+ + K + EL +K L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCLLVLL 251
Query: 148 DKGVKIWDPN-------------STR--EYLDSIGLVDRKEGDLGPV-YGFQWRHYGAEY 191
+ + + +TR + D + L E
Sbjct: 252 N----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL----TPDEV 303
Query: 192 KDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCA------------WNPIDMPKM---- 235
K + Y D L + + TNP RR+ + A W ++ K+
Sbjct: 304 KSLLLKYLDCRPQDLPREV--LTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 236 -----ALPPC---HCLAQFYV--ADGKLSCQLYQRS-ADMGLGVPFNIA----SYSLL-- 278
L P + V + L D+ + YSL+
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 279 -----TYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRP--FRRHGTIPLSVYMKVYK-VG 330
T I L+ + N R D ++ P F IP + Y +G
Sbjct: 420 QPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 331 DIVDIKGHGAVQKGMP--FKDYH---GKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVR 385
+ H F D+ K R + +A G I+N + + I
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYI--- 534
Query: 386 IEHIKHSKCR----EDFLKRVKENELKRKE---------AKEKGIKVNLKRQ 424
++ + DFL +++EN + K A+++ I +Q
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.020
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 379 PKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEK 415
R+ E I+ K RE+ KR++E + K +++
Sbjct: 77 ADRLTQEPESIR--KWREEQRKRLQELDAASKVMEQE 111
Score = 28.2 bits (62), Expect = 4.7
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 390 KHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQ 424
K K E++ +R + E EK N
Sbjct: 115 KAKKDLEEWNQR-------QSEQVEKNKINNRIAD 142
>3v2d_1 50S ribosomal protein L28; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2j03_1 2v47_1 2v49_1 2wdi_1 2wdj_1 2wdl_1 2wdn_1 2wh2_1
2wh4_1 2wrj_1 2wrl_1 2wro_1 2wrr_1 2x9s_1 2x9u_1 2xqe_1
2xtg_1 2xux_1 2y0v_1 2y0x_1 ...
Length = 98
Score = 29.2 bits (65), Expect = 0.70
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 329 VGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEH 388
V + + +G + G+ K G + R V V V + V H
Sbjct: 14 VANSIQRRGKAKREGGVGKK-TTGISKRRQYPNLQKVRVRVAGQ------EITFRVAASH 66
Query: 389 IKHSKCREDFLKRVKENELKRKEAKEK 415
I + K +K L KE K++
Sbjct: 67 IPKVYELVERAKGLKLEGLSPKEIKKE 93
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 28.4 bits (63), Expect = 1.6
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 27/94 (28%)
Query: 140 STNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYT 199
S K S+ + ++L+SIGL +Y++
Sbjct: 6 SLYKKAGSEMNGPRCPVQTVGQWLESIGL--------------------PQYENHLMANG 45
Query: 200 DQGIDQLQNIINTIK-------TNPNDRRIIMCA 226
+ + + + + N R+ I+ A
Sbjct: 46 FDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQA 79
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.8
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 256 QLYQRSADMGLG---VPFNIASYSLLTYMIAHVTGLQRTSNM 294
+Y + G VPFN S + +I + ++ +
Sbjct: 521 SIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGL 562
>1c5a_A Complement C5A anaphylatoxin; complement factor; NMR {Sus scrofa
domestica} SCOP: a.50.1.1
Length = 73
Score = 27.2 bits (60), Expect = 2.5
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 385 RIEHIKHSK-CREDFLKRVKENELKRKEAKEKGIKV 419
R IK C + F R E K I++
Sbjct: 37 RAARIKIGPKCVKAFKDCCYIANQVRAEQSHKNIQL 72
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta
protein, alpha/beta-mixed fold, glutaminyl cyclas
membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X*
3pb8_X* 3pb9_X*
Length = 330
Score = 29.1 bits (64), Expect = 3.5
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 126 WKGVVEELLWFIKG-STNAKELSDKGVKIW----DPNSTREYLDSIGLVDRKEGDLGPVY 180
W EEL + L + ++ DP LV R G G +
Sbjct: 3 WHRRTEELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQ 62
Query: 181 GFQW-----RHYGAEYK---DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCA 226
++ R A + D FT T G N++ T+ R + +
Sbjct: 63 VRKFLEATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLD-PRAARHLTLAC 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.8
Identities = 5/21 (23%), Positives = 7/21 (33%), Gaps = 6/21 (28%)
Query: 2 LESRLKGDNPDQ------NGT 16
L++ LK D T
Sbjct: 25 LQASLKLYADDSAPALAIKAT 45
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 28.7 bits (65), Expect = 4.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 341 VQKGMPFKDYHGKTGRV 357
+KG+PF++ H GR+
Sbjct: 378 AEKGLPFREAHHVVGRL 394
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
vacuolar type, hydrolase, ATP synthesis, ATP-binding,
hydrogen ION transport; HET: ADP; 4.51A {Thermus
thermophilus} PDB: 3a5d_G 3j0j_G*
Length = 223
Score = 28.2 bits (62), Expect = 4.9
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 369 VNKRV---RTRIIPKRINVRIEHIKHS---KCREDF--LKRVKENELKRKEAKEKGIK 418
+RV +IP I +I I+ + RED LKR+K R+ +E G
Sbjct: 157 TTRRVNALEQVVIP-GIRAQIRFIQQVLEQREREDTFRLKRIKGKIEAREAEEEGGRP 213
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 28.3 bits (64), Expect = 6.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 341 VQKGMPFKDYHGKTGRV 357
V KG+PF++ H G
Sbjct: 375 VAKGVPFREAHHIVGEA 391
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 27.9 bits (63), Expect = 7.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 341 VQKGMPFKDYHGKTGRV 357
V+KG+PF+ H +G+
Sbjct: 380 VRKGVPFRQAHTASGKA 396
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein,
metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP:
c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A*
2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A
2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Length = 329
Score = 27.8 bits (61), Expect = 7.2
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 183 QWRHYGAEYK---DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCA 226
+ + A++ D F T G NII+T+ R +++
Sbjct: 62 RIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLN-PTAKRHLVLAC 107
>3jpz_A Lombricine kinase; mixed alpha / beta, transferase; 1.95A {Urechis
caupo} PDB: 3jq3_A*
Length = 366
Score = 27.9 bits (61), Expect = 7.3
Identities = 9/41 (21%), Positives = 23/41 (56%)
Query: 14 NGTSVQTDEQQYLHLLDKIIKTIIRYQKTLHHSHTMFNLLP 54
N ++ E++++ LL +K +I ++ L ++ +L+P
Sbjct: 325 NAARLKKSEREFVQLLIDGVKKLIDMEQALEAGKSIDDLIP 365
>3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase;
1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A*
3ldr_A 3lih_A* 3lf7_A 3lfi_A*
Length = 634
Score = 28.2 bits (62), Expect = 7.4
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 1/76 (1%)
Query: 152 KIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIIN 211
+ +S + L + G V G F G F+ Y G +
Sbjct: 305 IVPQVSSIHDMLWAAGEVGVGSEQEGAKVEFSPSMAGFLDWG-FSAYAAAGKVLPASSAV 363
Query: 212 TIKTNPNDRRIIMCAW 227
+ + R + W
Sbjct: 364 SKTSGVEVDRYVSFVW 379
>2bdd_A ACP-synthase; structural genomics, structural genomics conso SGC,
transferase; 2.28A {Plasmodium yoelii yoelii}
Length = 182
Score = 27.2 bits (60), Expect = 7.8
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 384 VRIEHIKHSKCR-EDFLKRV-KENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGRTA 439
+ + I + +F+K+V EL E ++K + + + + A VS + A
Sbjct: 32 LCVNRIYKILEKNINFIKKVLNPFELAEFETQKKKLNEKINKSNELKKLAIYVSKKFA 89
>2dch_X Putative homing endonuclease; alpha/beta fold, hydrolase; 2.06A
{Thermoproteus}
Length = 216
Score = 27.3 bits (60), Expect = 7.8
Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 60 GDNPDQNGTSVQTDEQQYLHLLDKIIKTGHK------KSDRTGVGTLSLFGAQMRFDLTN 113
G ++ ++ +++++ + ++K+ GV + + ++ L N
Sbjct: 35 GHLDEEGYITILQKDRRFIDKIVALLKSAEIKISSLFYDKGAGVWKIKVKDERLYRYLVN 94
Query: 114 -GTFPLLTTKRVFWKGVVEELLWFIKG 139
G P + + LW+I G
Sbjct: 95 NGVIPGKKAHVLRPPSSAVDPLWYIIG 121
>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SG
structural genomics consortium, transferase; HET: A3P;
2.00A {Plasmodium yoelii yoelii}
Length = 163
Score = 27.1 bits (60), Expect = 8.0
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 384 VRIEHIKHSKCR-EDFLKRV-KENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGRTA 439
+ + I + +F+K+V EL E ++K + + + + A VS + A
Sbjct: 13 LCVNRIYKILEKNINFIKKVLNPFELAEFETQKKKLNEKINKSNELKKLAIYVSKKFA 70
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB:
3s8y_A
Length = 280
Score = 27.6 bits (61), Expect = 8.1
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 396 EDFLKRVKENELKRKEAKEKGIKVNLKRQP 425
++FL + E+ A + L+
Sbjct: 225 DNFLAEQLKPEVLEAAASSNNYPLELRSHE 254
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A
{Campylobacter jejuni}
Length = 252
Score = 27.5 bits (61), Expect = 9.3
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 365 VGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVN 420
+ V+V+K T I+ ++ +K R L + +++ + K+ GI VN
Sbjct: 3 IAVVVDKEPITT---YDIDQTMKALKID--RNKALGVLINEKMEISQMKQLGIVVN 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,136,570
Number of extensions: 437702
Number of successful extensions: 1575
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1519
Number of HSP's successfully gapped: 71
Length of query: 452
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,993,456
Effective search space: 1417676880
Effective search space used: 1417676880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)