RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2355
(452 letters)
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
[TaxId: 4754]}
Length = 295
Score = 230 bits (588), Expect = 2e-73
Identities = 142/226 (62%), Positives = 171/226 (75%), Gaps = 7/226 (3%)
Query: 72 TDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFG-AQMRFDLTNGTFPLLTTKRVFWKGVV 130
+EQQYL+L+ II G + DRTG GTLS+F + ++F L N TFPLLTTKRVF +GV+
Sbjct: 2 AEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVI 61
Query: 131 EELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAE 190
EELLWFI+G T++ +L +K + IWD N +REYLDSIGL R+EGDLGP+YGFQWRH+GAE
Sbjct: 62 EELLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAE 121
Query: 191 YKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYV-- 248
Y D T+Y QG+DQL NII I+T+P DRR+I+ AWNP D+ KMALPPCH QFYV
Sbjct: 122 YIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHI 181
Query: 249 ----ADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQR 290
+LSCQLYQRS DMGLGVPFNIASY+LLT MIAHV L
Sbjct: 182 PSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDP 227
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 224 bits (571), Expect = 6e-71
Identities = 122/218 (55%), Positives = 155/218 (71%), Gaps = 2/218 (0%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
E QYL LL ++++ G + +RTG+ T S+FG MRFD+ FPLLTTK+V + + EE
Sbjct: 4 YEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRES-FPLLTTKKVAIRSIFEE 62
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
L+WFIKG TN L +K V IW N ++EYL+ IGL R+E DLGP+YGFQWRHY EYK
Sbjct: 63 LIWFIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYK 122
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADG- 251
M DYT G+DQL +I T+K NP DRR I+ AWNP + +MALPPCH L+Q+YV +
Sbjct: 123 TMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDN 182
Query: 252 KLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 183 CLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 220
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 221 bits (564), Expect = 6e-70
Identities = 158/217 (72%), Positives = 185/217 (85%), Gaps = 1/217 (0%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
E QYL + I++ G +K DRTG GTLS+FG Q R+ L + FPLLTTKRVFWKGV+EE
Sbjct: 4 GELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDE-FPLLTTKRVFWKGVLEE 62
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
LLWFIKGSTNAKELS KGVKIWD N +R++LDS+G R+EGDLGPVYGFQWRH+GAEY+
Sbjct: 63 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 122
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
DM +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALPPCH L QFYV + +
Sbjct: 123 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 182
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 183 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 219
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 217 bits (554), Expect = 6e-68
Identities = 132/218 (60%), Positives = 170/218 (77%), Gaps = 1/218 (0%)
Query: 73 DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
E QYL+++ I+ G+K+SDRTGVG LS FG M+FDL+ FPLLTTK++F +G++EE
Sbjct: 42 PEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQY-FPLLTTKKLFLRGIIEE 100
Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
LLWFI+G TN L +K V+IW+ N TRE+LD+ L R+ DLGP+YGFQWRH+GAEY
Sbjct: 101 LLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYT 160
Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
+M+ +Y ++G+DQL+NIIN IK +P RRI++CAWN D+ +MALPPCH L QFYV DGK
Sbjct: 161 NMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGK 220
Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQR 290
LSC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 221 LSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQP 258
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei
[TaxId: 1582]}
Length = 316
Score = 216 bits (552), Expect = 9e-68
Identities = 110/248 (44%), Positives = 140/248 (56%), Gaps = 33/248 (13%)
Query: 74 EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
EQ YL L K++ GH K DRT GT S+FG QMRFDL+ G FPLLTTK+V + + EL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKG-FPLLTTKKVPFGLIKSEL 61
Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLG---------------- 177
LWF+ G TN + L IWD + +++ S D G
Sbjct: 62 LWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEE 121
Query: 178 ---------------PVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRI 222
YG YG++++ + IDQL ++I IKT+P R +
Sbjct: 122 MAKFDDRVLHDDAFAAKYGDLGLVYGSQWRA-WHTSKGDTIDQLGDVIEQIKTHPYSRAL 180
Query: 223 IMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMI 282
I+ AWNP D+P MALPPCH L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++
Sbjct: 181 IVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLV 240
Query: 283 AHVTGLQR 290
AH GL+
Sbjct: 241 AHECGLEV 248
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli
[TaxId: 562]}
Length = 264
Score = 190 bits (483), Expect = 3e-58
Identities = 106/215 (49%), Positives = 140/215 (65%), Gaps = 21/215 (9%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QYL L+ K++ G +K+DRTG GTLS+FG QMRF+L +G FPL+TTKR + ++ ELL
Sbjct: 2 KQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDG-FPLVTTKRCHLRSIIHELL 60
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
WF++G TN L + V IWD + GDLGPVYG QWR +
Sbjct: 61 WFLQGDTNIAYLHENNVTIWDEW------------ADENGDLGPVYGKQWRAWPT----- 103
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLS 254
+ IDQ+ ++N +K +P+ RRII+ AWN ++ KMAL PCH QFYVADGKLS
Sbjct: 104 ---PDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160
Query: 255 CQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
CQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4
[TaxId: 10665]}
Length = 286
Score = 182 bits (463), Expect = 5e-55
Identities = 96/234 (41%), Positives = 138/234 (58%), Gaps = 25/234 (10%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
+QY L+ I + G++ DRTG GT++LFG+++R+DLT G FP +TTK++ WK + EL+
Sbjct: 2 KQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKG-FPAVTTKKLAWKACIAELI 60
Query: 135 WFIKGSTNAKELS-------DKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHY 187
WF+ GSTN +L +G +WD N + D + G+LGP+YG QWR +
Sbjct: 61 WFLSGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKD----LGYHSGELGPIYGKQWRDF 116
Query: 188 GAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFY 247
G G+DQ+ +I+ IK PNDRR I+ AWNP ++ MALPPCH QF
Sbjct: 117 G-------------GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFN 163
Query: 248 VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYR 301
V +G L Q YQRS D+ LG+PFNIASY+ L +++A + L + +
Sbjct: 164 VRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTH 217
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
[TaxId: 10665]}
Length = 241
Score = 180 bits (458), Expect = 1e-54
Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 36/222 (16%)
Query: 75 QQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELL 134
++ L +K D+TGV T+ + GA D F L + + EL
Sbjct: 9 EEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFI-FGALNDEYI-----QRELE 62
Query: 135 WFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDM 194
W+ S K++ + KIW + +G++ YG+
Sbjct: 63 WYKSKSLFVKDIPGETPKIWQQVA------------SSKGEINSNYGWAI---------- 100
Query: 195 FTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMP-----KMALPPCHCLAQFYVA 249
+++ Q + + NP+ RR IM P M+ C Q+ +
Sbjct: 101 ---WSEDNYAQYDMCLAELGQNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIR 157
Query: 250 DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRT 291
D K++ + RS D+ G + A + + +
Sbjct: 158 DKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDS 199
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 95
Score = 142 bits (360), Expect = 3e-42
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 296 NSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTG 355
+S G GTR R GT P ++ + G+ V +K +V G + G+TG
Sbjct: 2 SSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTG 61
Query: 356 RVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSK 393
V A V + + K I V H++ +
Sbjct: 62 TVEGKQGDAYKVDIVDGGK----EKTIIVTAAHLRRQE 95
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 147 bits (373), Expect = 5e-42
Identities = 74/222 (33%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 74 EQQYLHLLDKIIKTG----------HKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKR 123
++QY ++ II G SD T TLS+ QMRFD N P+LTTK+
Sbjct: 4 DKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD--NSEVPILTTKK 61
Query: 124 VFWKGVVEELLWFIKGSTN-AKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGF 182
V WK ++ELLW + +N +L+ GV IWD +
Sbjct: 62 VAWKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDG-------------------T 102
Query: 183 QWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHC 242
YG + + +DQ+ +++ +K NP+ RR I WNP ++ MAL PC
Sbjct: 103 IGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVY 162
Query: 243 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAH 284
Q+YV GKL ++ RS DM LG PFN+ Y++L MIA
Sbjct: 163 ETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQ 204
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Length = 297
Score = 33.4 bits (76), Expect = 0.051
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 42/148 (28%)
Query: 107 MRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELS--DKGVKIWDPNSTREYLD 164
MR D N P K V K V + L F K E K ++ D
Sbjct: 66 MRVDYVNWKGPKYNNKLV--KRFVSQFLLFRKEEKEKNEKEALLKASEL-----VSGMGD 118
Query: 165 SIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQ----------GIDQLQNIINTIK 214
+G + G +YK++ + + ++ +N +
Sbjct: 119 KLG-----------------EYLGVKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNKVL 161
Query: 215 TNPN------DRRIIMCAWNPIDMPKMA 236
NP D+ I+ AW ++ MA
Sbjct: 162 ANPKMKVNKSDKDAIVNAWKQVNAKDMA 189
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 29.2 bits (65), Expect = 0.17
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 147 SDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQL 206
S + + + +E+L+ I L Y G E D D + + +L
Sbjct: 3 SGSSGRRENHQTIQEFLERIHL---------QEYTSTLLLNGYETLDDLKDIKESHLIEL 53
Query: 207 QNIINTIKTNPNDRRIIMCA 226
+P DR ++ A
Sbjct: 54 NI------ADPEDRARLLSA 67
>d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 374
Score = 30.4 bits (67), Expect = 0.43
Identities = 24/237 (10%), Positives = 47/237 (19%), Gaps = 7/237 (2%)
Query: 139 GSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDY 198
T+ + + V ++ L D + G L + + +
Sbjct: 58 APTHQVQWQAQEVVAQARLDGHRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRAN 117
Query: 199 TDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLY 258
+ ++P D + A+ P HCL Q L Y
Sbjct: 118 VTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGHCL-QLNDRARSLVVPAY 176
Query: 259 QRSADMGL--GVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHG 316
+ +P S + R
Sbjct: 177 AYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDTLECQVAEVETGEQRVVTLNARSH 236
Query: 317 TIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRV 373
+ + + K + G G V + G +
Sbjct: 237 LR----ARVQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQW 289
>d1oqka_ b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 78
Score = 28.1 bits (63), Expect = 0.53
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 348 KDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINV 384
+D G +GRV + T++ + I R +PK I V
Sbjct: 17 RDIQGISGRVVDETRNTL-RIEMDDGREITVPKGIAV 52
>d2j0111 d.325.1.1 (1:8-96) Ribosomal protein L28 (L28p) {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 27.5 bits (61), Expect = 0.87
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 329 VGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVR-IE 387
V + + +G A ++G K G + R V V V + T R+ I
Sbjct: 7 VANSIQRRGK-AKREGGVGKKTTGISKRRQYPNLQKVRVRVAGQEIT----FRVAASHIP 61
Query: 388 HIKHSKCREDFLK--RVKENELKRKEAK 413
+ R LK + E+K++ K
Sbjct: 62 KVYELVERAKGLKLEGLSPKEIKKELLK 89
>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus),
ptp-sl/br7 [TaxId: 10090]}
Length = 297
Score = 29.4 bits (65), Expect = 0.93
Identities = 25/146 (17%), Positives = 43/146 (29%), Gaps = 7/146 (4%)
Query: 104 GAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYL 163
G + F T G P++ T FW+ V +E I T KE ++K V W
Sbjct: 98 GKEKAFIATQG--PMINTVNDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGK 155
Query: 164 DSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRII 223
+ + E D + + YT + + P + ++
Sbjct: 156 VEVLVTGVTECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPD-----SAQPLLQLML 210
Query: 224 MCAWNPIDMPKMALPPCHCLAQFYVA 249
+ + HC A
Sbjct: 211 DVEEDRLASEGRGPVVVHCSAGIGRT 236
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
562]}
Length = 174
Score = 28.2 bits (63), Expect = 1.3
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 186 HYGAEYKDMFTDYTDQ-------GIDQLQNIINTIKTNPN------DRRIIMCAWNPIDM 232
YGA+ + + + Q +++ + + N DR I A + +
Sbjct: 16 KYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRADINKKINAKDRAAIAAALESVKL 75
Query: 233 PKMA 236
++
Sbjct: 76 SDIS 79
>d1kjsa_ a.50.1.1 (A:) C5a anaphylotoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 74
Score = 26.7 bits (59), Expect = 1.6
Identities = 6/34 (17%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 385 RIEHIKHSK-CREDFLKRVKENELKRKEAKEKGI 417
R I C + F + R K +
Sbjct: 37 RAARISLGPRCIKAFTECCVVASQLRANISHKDM 70
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II
FOLH1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 27.9 bits (61), Expect = 2.4
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 183 QWRHYGAEYKDMFTDYTDQGIDQLQNIINTIK--TNPNDRRIIMCAWNPIDMP 233
QW+ +G + ++ + ++ N+I T++ P+ I+ +
Sbjct: 43 QWKEFGLDSVELAHYDVLLEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFG 95
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 28.2 bits (63), Expect = 2.5
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 325 KVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGV 367
V K I++I + P K ++ VF + +
Sbjct: 118 DVMKCDAILEIPNAKGIHGLRPQKW--PRSNYVFCNGEDETPL 158
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 27.5 bits (61), Expect = 2.5
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 16/67 (23%)
Query: 186 HYGAEYKDMFTDYTDQ----------GIDQLQNIINTIKTNPN------DRRIIMCAWNP 229
+ G +YK + + + D + IN + NP+ D+ I+ AW
Sbjct: 27 YLGDKYKALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKA 86
Query: 230 IDMPKMA 236
+ M
Sbjct: 87 FNAEDMG 93
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase,
QPCT {Human (Homo sapiens) [TaxId: 9606]}
Length = 329
Score = 27.9 bits (61), Expect = 2.7
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 183 QWRHYGAEY---KDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWN--PIDMPKMAL 237
+ + A++ D F T G NII+T+ ++ C ++ +
Sbjct: 62 RIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPTAKRHLVLACHYDSKYFSHWNNRV 121
Query: 238 PP 239
Sbjct: 122 FV 123
>d1ts9a_ b.137.1.1 (A:) Hypothetical protein AF1917 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 98
Score = 26.2 bits (58), Expect = 2.9
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 348 KDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINV 384
G G V + TQ+ + ++ K ++ + KR
Sbjct: 24 HSEVGIKGEVVDETQNTLKIMTEKGLKV--VAKRGRT 58
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.1 bits (60), Expect = 3.1
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 16/67 (23%)
Query: 186 HYGAEYKDMFTDYTDQ----------GIDQLQNIINTIKTNPN------DRRIIMCAWNP 229
H G +YK + D D D +N I NP DR ++ AW
Sbjct: 25 HLGDKYKAIAKDIADNIKNFQGKTIRSFDDAMASLNKITANPAMKINKADRDALVNAWKH 84
Query: 230 IDMPKMA 236
+D MA
Sbjct: 85 VDAQDMA 91
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Thermotoga maritima [TaxId: 2336]}
Length = 105
Score = 26.3 bits (58), Expect = 3.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 189 AEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRII 223
EY +F D T + + L + + ++ NP D +I
Sbjct: 4 MEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELI 38
>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 344
Score = 26.6 bits (58), Expect = 6.8
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 324 MKVYKVGDIVD-IKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRI 382
K Y + ++ + G + G K R + + + +++
Sbjct: 224 PKGYGLALAIEMLSAIGGAEVGTKVKGTANPEERCTK-GDLFIAINPEFFMGKEEFKRKV 282
Query: 383 NVRIEHIKHSKCREDFLKRV-KENELKRKEAKEKGIKVN 420
+ ++ IK+S+ E F + E E + K ++ G +++
Sbjct: 283 DELLDEIKNSEPAEGFEILIPGEIEERNKMKRKDGFEID 321
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 25.9 bits (56), Expect = 9.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 309 SRPFRRHGTIPL 320
RP ++HG IPL
Sbjct: 253 YRPKKKHGNIPL 264
>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 25.2 bits (55), Expect = 9.5
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 196 TDYTDQ-GIDQLQNIINTIKTNPNDRRIIM 224
+ TD GID + ++NT+K NP DR +++
Sbjct: 5 SSGTDSTGIDLHEFLVNTLKKNPRDRMMLL 34
>d2p0sa1 c.94.1.3 (A:48-183) Uncharacterized protein PG0945
{Porphyromonas gingivalis [TaxId: 837]}
Length = 136
Score = 25.5 bits (56), Expect = 9.7
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 198 YTDQGIDQLQNIINTIKTNPN 218
I ++ I+ K +
Sbjct: 92 IASYNIPDIKQILADSKIELS 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,757,166
Number of extensions: 85080
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 40
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)