BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2356
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 158/501 (31%), Positives = 238/501 (47%), Gaps = 112/501 (22%)
Query: 48 GHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQG 107
GHL +V LL RGA+ + + K T LH+A+ + G
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAA--------------------------RAG 58
Query: 108 HDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIXXX 163
H +V LL+N + + KD TPL A + GH +V +LLEN+ + A H
Sbjct: 59 HTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 118
Query: 164 XXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHY 223
+++ G+ T L++ E + +K GFTPLH+A+ Y
Sbjct: 119 ----------------------IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 156
Query: 224 GNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL 283
G VA +LL++ A N + K+GLTPLHVA ++IV LL +P P G TPL
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL 216
Query: 284 HLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRG 343
H+AA+ NQ ++ R LL+ G +A + +G T L +A
Sbjct: 217 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA-----------------------A 253
Query: 344 REGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE-KHKNGLTPLHLCAQEDRVGVAE 402
+EGH + L+ + +G +K+GLTPLHL AQE V VA+
Sbjct: 254 QEGHAEM------------------VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295
Query: 403 LLLKNNAQVDTPTKM--------------DIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
+L+K+ VD T+M + LL++ A NA++ G++PLH +A +G
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 355
Query: 449 HADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVT-ETLIIAKGDGEKHK 507
H D+ +LL++GA + + +G T L+IA++LGYISV + LK VT ET + D KH+
Sbjct: 356 HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD--KHR 413
Query: 508 VVAPEIMQETFMSDSEDENGE 528
+ PE + E + SEDE E
Sbjct: 414 MSFPETVDE-ILDVSEDEGEE 433
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 176/350 (50%), Gaps = 26/350 (7%)
Query: 6 TSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDS 65
T AARAGH + L+N + ++ GH ++V LL AN +
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Query: 66 ATKKGNTALHIASLG---EFLVPVWLGDFKQG----DGFTPLAVAMQQGHDKVVAVLLEN 118
AT G+T LHIA+ E ++ + + Q GFTPL VA + G +V +LLE
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 119 DTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA------LHIXXXXXXXX 168
D GK+G TPL VA+ + +V +LL G PA LHI
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSPHSPAWNGYTPLHIAAKQNQVE 226
Query: 169 XXXXXXEVSCTVDPASV-------LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIAS 221
+ + + SV L++ G+A L+ + N ++ +KSG TPLH+ +
Sbjct: 227 VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA 286
Query: 222 HYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET 281
G+ VA++L+ V+ + + G TPLHVAS G + +V +LLQ+ A+ + T G +
Sbjct: 287 QEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS 346
Query: 282 PLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
PLH AA+ TDI+ +LL+NGA + + +G T L+IA++LGYISV + L
Sbjct: 347 PLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 150/293 (51%), Gaps = 27/293 (9%)
Query: 214 FTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
TPLH+AS G+ + LL + A N S TPLH+A+ G + YLLQN A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA 333
+TPLH AAR T+++++LL N A + GHT L IA + G++ +L
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 334 AERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKH---KNGLTPLH 390
E SQ ++G T L +A K G + V E ++ + D + KNGLTPLH
Sbjct: 135 KEASQ-ACMTKKGFTPLHVAAKYGKVRVAE---------LLLERDAHPNAAGKNGLTPLH 184
Query: 391 LCAQEDRVGVAELLLKNNAQVDTP--------------TKMDIATTLLEYGAKPNAESVA 436
+ + + + +LLL +P ++++A +LL+YG NAESV
Sbjct: 185 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244
Query: 437 GFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
G TPLHL+A EGHA+M A+LL A+ + K G T L + + G++ V + L
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 147/320 (45%), Gaps = 58/320 (18%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
GHT AAR GH++ ++ L+ +K G + V LL R A+
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 64 DSATKKGNTALHIA------SLGEFLV--------PVWLGDFKQGDGFTPLAVAMQQGHD 109
++A K G T LH+A + + L+ P W +G+TPL +A +Q
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW-------NGYTPLHIAAKQNQV 225
Query: 110 KVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG----KVRLPALHIX 161
+V LL+ + G TPL +A Q+GH ++VA+LL G K L LH
Sbjct: 226 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH-- 283
Query: 162 XXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIAS 221
L + G+ LIK+ D T++ G+TPLH+AS
Sbjct: 284 ------------------------LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Query: 222 HYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET 281
HYGN + LL +ADVN K G +PLH A+ G +IV LL+N A+P+ + G T
Sbjct: 320 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 379
Query: 282 PLHLAAR---ANQTDIIRIL 298
PL +A R + TD+++++
Sbjct: 380 PLAIAKRLGYISVTDVLKVV 399
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 80/133 (60%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + +G+TPLH+A+H+G+ + +LL ADVN G+TPLH+A+ G
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+N A+ + G TPLHLAA+ +I+ +LL+NGA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
+ G + E L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN +G TPLH+A+ G + IV LL+N A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAAR +I+ +LL+NGA V+A G T L +A K G++ + E L + +
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL-LKNGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 87/206 (42%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A R
Sbjct: 21 AARAGQDDEVRILMANGADVNA----------------------------------RDFT 46
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G T L +A G++ + E L+ D K G+TPLHL A+ + + E+L
Sbjct: 47 GWTPLHLAAHFGHLEI-------VEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
LKN GA NA GFTPLHL+A GH ++ +LL++GADV+
Sbjct: 100 LKN-------------------GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
K G TA I+ G + E L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 30/144 (20%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + GHL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-- 75
Query: 68 KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKD- 124
K G TPL +A ++GH ++V VLL+N D D
Sbjct: 76 ------------------------KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDS 111
Query: 125 -GFTPLAVAMQQGHDKVVAVLLEN 147
GFTPL +A ++GH ++V VLL+N
Sbjct: 112 HGFTPLHLAAKRGHLEIVEVLLKN 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 30/157 (19%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLEN--DTRGKVRLP 156
A + G D V +L+ N D +D G+TPL +A GH ++V VLL+N D K
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD--- 77
Query: 157 ALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
S V P L++ G+ L+KN + + + GFTP
Sbjct: 78 --------------------SLGVTPLH-LAARRGHLEIVEVLLKNGADVNASDSHGFTP 116
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
LH+A+ G+ + +LL ADVN K G T ++
Sbjct: 117 LHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 30/145 (20%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T AA GHL+ + LKN D+ ++ GHL +V LL GA+V
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV 106
Query: 64 DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTR 121
+++ GFTPL +A ++GH ++V VLL+N D
Sbjct: 107 NASDSH--------------------------GFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 122 GKDGF--TPLAVAMQQGHDKVVAVL 144
+D F T +++ G++ + +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 40/148 (27%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLEN---- 147
G+TPL +A GH ++V VLL+N D KD G TPL +A ++GH ++V VLL+N
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV 106
Query: 148 ---DTRGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEH 204
D+ G LH L++ G+ L+KN
Sbjct: 107 NASDSHG---FTPLH--------------------------LAAKRGHLEIVEVLLKNGA 137
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANIL 232
+ + K G T I+ GNE +A IL
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 78/136 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + K G+TPLH+A+ G+ + +LL ADVN K G TPLH+A+ G
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+ A+ + G TPLHLAAR +I+ +LL+ GA V+A+ + G T +
Sbjct: 81 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL 140
Query: 319 AQKLGYISVEESLGAA 334
A + G+ + E L A
Sbjct: 141 AIREGHEDIAEVLQKA 156
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN K G TPLH+A+ G + IV LL+ A+ + G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAAR +I+ +LL+ GA V+A+ ++G+T L +A + G++ + E L A + +
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADV 127
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G T +A + G+ + E L+
Sbjct: 128 NAQDKFGKTPFDLAIREGHEDIAEVLQ 154
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A+ ++
Sbjct: 9 AARAGQDDEVRILMANGADVNAK----------------------------------DKD 34
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G+T L +A + G++ + E L+ A D K K+G TPLHL A+E + + E+L
Sbjct: 35 GYTPLHLAAREGHLEI-------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
LK A V NA+ G+TPLHL+A EGH ++ +LL+ GADV+
Sbjct: 88 LKAGADV-------------------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
K G T +A + G+ + E L+
Sbjct: 129 AQDKFGKTPFDLAIREGHEDIAEVLQ 154
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 11/149 (7%)
Query: 7 SFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSA 66
L AARAG D++ + N D+ +++GHL +V LL GA+V++
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 67 TKKGNTALHIASLGEFL--VPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLE-- 117
K G T LH+A+ L V V L + K DG+TPL +A ++GH ++V VLL+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 118 NDTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F TP +A+++GH+ + VL
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++ G+ L+K + + K G+TPLH+A+ G+ + +LL ADVN K
Sbjct: 41 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 100
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
G TPLH+A+ G + IV LL+ A+ + G+TP LA R DI +L
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 103 AMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVR 154
A + G D V +L+ N + + KDG+TPL +A ++GH ++V VLL+ + + K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 155 LPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
LH L++ G+ L+K + + K G+
Sbjct: 69 YTPLH--------------------------LAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNI 261
TPLH+A+ G+ + +LL ADVN K G TP +A G +I
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 75/121 (61%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + T SG TPLH+A+ YG+ + +LL ADVN G TPLH+A+ +G
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL++ A+ + G+TPLHLAA +I+ +LL++GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + SGLTPLH+A+ G + IV LL++ A+ + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL++GA V+A G T L +A +G++ + E L + +
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAK 429
+GLTPLHL A + + E+LLK+ A V+ TP + +I LL++GA
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
NA G TPLHL+A GH ++ +LL+HGADV+ K G TA I+ G + E L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 490 K 490
+
Sbjct: 166 Q 166
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++T G+ L+K+ + + G TPLH+A+ G+ + +LL ADVN
Sbjct: 53 LAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW 112
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
G TPLH+A+ MG + IV LL++ A+ + G+T ++ D+ IL
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA +G TPLHL+A+ GH ++ +LL+HGADV+ G T L +A
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLA 87
Query: 478 QKLGYISVEESL 489
+G++ + E L
Sbjct: 88 ALIGHLEIVEVL 99
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + GHL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 68 KKGNTALHIASL-GEF-LVPVWL---GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEN-- 118
G+T LH+A+L G +V V L D D G TPL +A GH ++V VLL++
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 78/133 (58%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + SG+TPLH+A+ G+ + +LL ADVN +G+TPL +A+ G
Sbjct: 33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+N A+ + + G TPLHLAA +I+ +LL+NGA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
+ G + E L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN SG TPLH+A+F G + IV LL+N A+ + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPL LAA +I+ +LL+NGA V+A EGHT L +A G++ + E L + +
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL-LKNGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
G TPLHL A + + E+LLKN A V+ TP ++ +I LL+ GA
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
NA + G TPLHL+A GH ++ +LL++GADV+ K G TA I+ G + E L+
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++ G+ L+KN + + +G TPL +A+ +G+ + +LL ADVN +
Sbjct: 53 LAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME 112
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
G TPLH+A+ G + IV LL+N A+ + G+T ++ D+ IL
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NAE +G+TPLHL+A GH ++ +LL++GADV+ G T L +A
Sbjct: 28 DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87
Query: 478 QKLGYISVEESL 489
G++ + E L
Sbjct: 88 ALFGHLEIVEVL 99
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + +GHL +V LL GA+V++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 68 KKGNTALHIASLGEFL--VPVWL---GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEN-- 118
G T L +A+L L V V L D D G TPL +A GH ++V VLL+N
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLEN 147
G+TPL +A GH ++V VLL+N D D G TPL +A GH ++V VLL+N
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 75/121 (61%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + T SG TPLH+A+ YG+ + +LL ADVN G TPLH+A+ +G
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL++ A+ + G+TPLHLAA +I+ +LL++GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + SGLTPLH+A+ G + IV LL++ A+ + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL++GA V+A G T L +A +G++ + E L + +
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAK 429
+GLTPLHL A + + E+LLK+ A V+ TP + +I LL++GA
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
NA G TPLHL+A GH ++ +LL+HGADV+ K G TA I+ G + E L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 490 K 490
+
Sbjct: 166 Q 166
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++T G+ L+K+ + + G TPLH+A+ G+ + +LL ADVN
Sbjct: 53 LAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW 112
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
G TPLH+A+ MG + IV LL++ A+ + G+T ++ D+ IL
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA +G TPLHL+A+ GH ++ +LL+HGADV+ G T L +A
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLA 87
Query: 478 QKLGYISVEESL 489
+G++ + E L
Sbjct: 88 ALIGHLEIVEVL 99
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + GHL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 68 KKGNTALHIASL-GEF-LVPVWL---GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEN-- 118
G+T LH+A+L G +V V L D D G TPL +A GH ++V VLL++
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 80/133 (60%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + T +G TPLH+A+ G + +LL ADVN S +G+TPLH+A++ G
Sbjct: 25 LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGH 84
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL++ A+ + G TPLHLAA + Q +I+ +LL++GA V+A+ G TA I
Sbjct: 85 LEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDI 144
Query: 319 AQKLGYISVEESL 331
+ G + E L
Sbjct: 145 SINQGQEDLAEIL 157
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + +GLTPLH+A+ G + IV LL+N A+ + G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
TPLHLAA +I+ +LL++GA V+A R G T L +A G + + E L
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 80/158 (50%), Gaps = 18/158 (11%)
Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEK----HKNGLTPLHLCAQEDRVGVAELLLK 406
+ Q LG +E + G + + I +G NGLTPLHL A ++ + E+LLK
Sbjct: 1 AFGQDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK 60
Query: 407 NNAQVD-------TPTKM-------DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM 452
N A V+ TP + +I LL++GA NA AG+TPLHL+A G ++
Sbjct: 61 NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEI 120
Query: 453 SAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
+LL+HGADV+ G TA I+ G + E L+
Sbjct: 121 VEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++ G L+KN + + + +G TPLH+A++ G+ + +LL ADVN ++
Sbjct: 45 LAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRA 104
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
G TPLH+A+ G + IV LL++ A+ + G T ++ Q D+ IL
Sbjct: 105 GWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AA AG D++ + N D+ + +G L +V LL GA+V+++
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 68 KKGNTALHIASLGEFL--VPVWL---GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEN-- 118
G T LH+A+ L V V L D D G+TPL +A G ++V VLL++
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 119 DTRGKD--GFTPLAVAMQQGHDKVVAVL 144
D +D G T +++ QG + + +L
Sbjct: 130 DVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T AA G L+ + LKN D+ + DGHL +V LL GA+V
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 64 DSATKKGNTALHIASL-GEF-LVPVWL---GDFKQGD--GFTPLAVAMQQGHDKVVAVL 115
++ + G T LH+A+L G+ +V V L D D G T +++ QG + + +L
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
Query: 56 LLSRGANVDSATKKGNTALHIASL-GEF-LVPVWL---GDFKQGD--GFTPLAVAMQQGH 108
L++ GA+V++ G T LH+A+ G+ +V V L D D G TPL +A GH
Sbjct: 25 LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGH 84
Query: 109 DKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
++V VLL++ D D G+TPL +A G ++V VLL+
Sbjct: 85 LEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + K G+TPLH+A+ G+ + +LL ADVN K G TPLH+A+ G
Sbjct: 33 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+ A+ + G TPLHLAAR +I+ +LL+ GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN K G TPLH+A+ G + IV LL+ A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAAR +I+ +LL+ GA V+A+ ++G+T L +A + G++ + E L A + +
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 94/206 (45%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A+ ++
Sbjct: 21 AARAGQDDEVRILMANGADVNAK----------------------------------DKD 46
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G+T L +A + G++ + E L+ A D K K+G TPLHL A+E + + E+L
Sbjct: 47 GYTPLHLAAREGHLEI-------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
LK A V NA+ G+TPLHL+A EGH ++ +LL+ GADV+
Sbjct: 100 LKAGADV-------------------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
K G TA I+ G + E L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 30/144 (20%)
Query: 7 SFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSA 66
L AARAG D++ + N D+ +++GHL +V LL GA+V++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 67 TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRG 122
K DG+TPL +A ++GH ++V VLL+ + +
Sbjct: 77 DK--------------------------DGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 110
Query: 123 KDGFTPLAVAMQQGHDKVVAVLLE 146
KDG+TPL +A ++GH ++V VLL+
Sbjct: 111 KDGYTPLHLAAREGHLEIVEVLLK 134
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+K + + K G+TPLH+A+ G+ + +LL ADVN K G TPLH+A+ G
Sbjct: 66 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 125
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ IV LL+ A+ + G+T ++ D+ IL
Sbjct: 126 LEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 34/159 (21%)
Query: 103 AMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVR 154
A + G D V +L+ N + + KDG+TPL +A ++GH ++V VLL+ + + K
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 155 LPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
LH L++ G+ L+K + + K G+
Sbjct: 81 YTPLH--------------------------LAAREGHLEIVEVLLKAGADVNAKDKDGY 114
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
TPLH+A+ G+ + +LL ADVN K G T ++
Sbjct: 115 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 76/121 (62%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + T G+TPLH+A+ G+ + +LL ADVN S +G+TPLH+A+ G
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL++ A+ + G TPLHLAA+ +I+ +LL++GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + G TPLH+A+ G + IV LL+N A+ + + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL++GA V+A +GHT L +A K G++ + E L + +
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKMDIAT-------TLLEYGA 428
+G TPLHL A + + E+LLKN A V+ TP + AT LL++GA
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488
NA G TPLHL+A GH ++ +LL+HGADV+ K G TA I+ G + E
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 489 LK 490
L+
Sbjct: 165 LQ 166
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + +GHL +V LL GA+V+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 68 KKGNTALHIASLGEFL--VPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
G T LH+A+ L V V L + DG TPL +A + GH ++V VLL++
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L+++ G+ L+KN + + + +G TPLH+A+ G+ + +LL ADVN
Sbjct: 53 LAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDND 112
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
G TPLH+A+ G + IV LL++ A+ + G+T ++ D+ IL
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA G+TPLHL+AS GH ++ +LL++GADV+ + G T L +A
Sbjct: 28 DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLA 87
Query: 478 QKLGYISVEESL 489
G++ + E L
Sbjct: 88 AATGHLEIVEVL 99
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 34/159 (21%)
Query: 103 AMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVR 154
A + G D V +L+ N + DG+TPL +A GH ++V VLL+N +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 155 LPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
+ LH L++ TG+ L+K+ + + G
Sbjct: 81 ITPLH--------------------------LAAATGHLEIVEVLLKHGADVNAYDNDGH 114
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
TPLH+A+ YG+ + +LL ADVN K G T ++
Sbjct: 115 TPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + K G+TPLH+A+ G+ + +LL ADVN K G TPLH+A+ G
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+ A+ + G TPLHLAAR +I+ +LL+ GA V+A+ + G T +
Sbjct: 81 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL 140
Query: 319 AQKLGYISVEESLGAA 334
A G + E L A
Sbjct: 141 AIDNGNEDIAEVLQKA 156
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN K G TPLH+A+ G + IV LL+ A+ + G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAAR +I+ +LL+ GA V+A+ ++G+T L +A + G++ + E L A + +
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADV 127
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G T +A G + E L+
Sbjct: 128 NAQDKFGKTPFDLAIDNGNEDIAEVLQ 154
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A+ ++
Sbjct: 9 AARAGQDDEVRILMANGADVNAK----------------------------------DKD 34
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G+T L +A + G++ + E L+ A D K K+G TPLHL A+E + + E+L
Sbjct: 35 GYTPLHLAAREGHLEI-------VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
LK A V NA+ G+TPLHL+A EGH ++ +LL+ GADV+
Sbjct: 88 LKAGADV-------------------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
K G T +A G + E L+
Sbjct: 129 AQDKFGKTPFDLAIDNGNEDIAEVLQ 154
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 11/149 (7%)
Query: 7 SFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSA 66
L AARAG D++ + N D+ +++GHL +V LL GA+V++
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 67 TKKGNTALHIASLGEFL--VPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLE-- 117
K G T LH+A+ L V V L + K DG+TPL +A ++GH ++V VLL+
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 118 NDTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F TP +A+ G++ + VL
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++ G+ L+K + + K G+TPLH+A+ G+ + +LL ADVN K
Sbjct: 41 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 100
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
G TPLH+A+ G + IV LL+ A+ + G+TP LA DI +L +
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 103 AMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVR 154
A + G D V +L+ N + + KDG+TPL +A ++GH ++V VLL+ + + K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 155 LPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
LH L++ G+ L+K + + K G+
Sbjct: 69 YTPLH--------------------------LAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNI 261
TPLH+A+ G+ + +LL ADVN K G TP +A G +I
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 73/116 (62%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+G TPLH+A+ G+ V +LL+ ADVN K+G TPLH+A+ G + +V LL+ A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISV 327
+ G TPLHLAAR +++++LL GA V+A+ + G T L +A + G++ V
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
+ K+G TPLH+A+ G+ V +LL+ ADVN K+G TPLH+A+ G + +V LL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
+ A+ + G TPLHLAAR +++++LL GA
Sbjct: 89 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 14/116 (12%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAK 429
NG TPLHL A+ + V +LLL+ A V+ K +++ LLE GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
NA+ G TPLHL+A GH ++ +LLE GADV+ K G T L +A + G++ V
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 11/113 (9%)
Query: 45 SKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWL-------GDFKQGDGF 97
+++GHL VV LL GA+V++ K G T LH+A+ L V L + K +G
Sbjct: 10 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 69
Query: 98 TPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
TPL +A + GH +VV +LLE + + K+G TPL +A + GH +VV +LLE
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 22/131 (16%)
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G T L +A + G++ V + L+ A D K KNG TPLHL A+ + V +LL
Sbjct: 2 GRTPLHLAARNGHLEV-------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 405 LKNNAQVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA 450
L+ A V+ K +++ LLE GA NA+ G TPLHL+A GH
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114
Query: 451 DMSAMLLEHGA 461
++ +LLE GA
Sbjct: 115 EVVKLLLEAGA 125
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 36/149 (24%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE---- 146
+G TPL +A + GH +VV +LLE + + K+G TPL +A + GH +VV +LLE
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 147 -NDTRGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHN 205
N R P LH L++ G+ L++ +
Sbjct: 61 VNAKDKNGRTP-LH--------------------------LAARNGHLEVVKLLLEAGAD 93
Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLD 234
+ K+G TPLH+A+ G+ V +LL+
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + SG TPLH+A+ G+ + +LL ADVN + K G TPLH+A+ G
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+N A+ + G TPLHLAA A +I+ +LL+ GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN SG TPLH+A+ G + IV LL++ A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
+TPLHLAA +I+ +LL+NGA V+A G T L +A G++ + E L + +
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL-LKYGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 87/205 (42%), Gaps = 59/205 (28%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A G T L +A G++ + E L K G +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVL--------LKHGAD 72
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
+ A K G TPLHL A + + E+LL
Sbjct: 73 VNAA--------------------------------DKMGDTPLHLAALYGHLEIVEVLL 100
Query: 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
KN A V NA GFTPLHL+A GH ++ +LL++GADV+
Sbjct: 101 KNGADV-------------------NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 466 AAKEGHTALSIAQKLGYISVEESLK 490
K G TA I+ G + E L+
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + GHL +V LL GA+V++A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 68 KKGNTALHIASLGEFL--VPVWL---GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEN-- 118
K G+T LH+A+L L V V L D D GFTPL +A GH ++V VLL+
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+K+ + + K G TPLH+A+ YG+ + +LL ADVN + G TPLH+A+ G
Sbjct: 66 LLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGH 125
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
+ IV LL+ A+ + G+T ++ D+ IL +
Sbjct: 126 LEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLEN 147
G TPL +A +GH ++V VLL++ D D G TPL +A GH ++V VLL+N
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN 102
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T AA GHL+ + LKN D+ + GHL +V LL GA+V
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 64 DSATKKGNTALHIA 77
++ K G TA I+
Sbjct: 140 NAQDKFGKTAFDIS 153
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 75/121 (61%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + +G TPLH+A++ G+ + +LL ADV+ S G TPLH+A++ G
Sbjct: 33 LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+N A+ + G TPLHLAA+ +I+ +LL++GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + +G TPLH+A++ G + IV LL++ A+ D V G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL+NGA V+A +G T L +A K GY+ + E L + +
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
G TPLHL A + + E+LLK+ A VD TP + +I LL+ GA
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
NA G TPLHL+A G+ ++ +LL+HGADV+ K G TA I+ G + E L+
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 63/113 (55%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++ +G+ L+K+ + D + G+TPLH+A+++G+ + +LL ADVN
Sbjct: 53 LAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSD 112
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
G+TPLH+A+ G + IV LL++ A+ + G+T ++ D+ IL
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A G T L +A G++ + E L + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVL-LKHGADVDASDVF 79
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G+T L +A G++ + E L+ D +G+TPLHL A+ + + E+L
Sbjct: 80 GYTPLHLAAYWGHLEI-------VEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
LK +GA NA+ G T +S G+ D++ +L
Sbjct: 133 LK-------------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + GHL +V LL GA+VD++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 68 KKGNTALHIASLGEFL--VPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
G T LH+A+ L V V L + DG TPL +A + G+ ++V VLL++
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA G TPLHL+A GH ++ +LL+HGADV + G+T L +A
Sbjct: 28 DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLA 87
Query: 478 QKLGYISVEESL 489
G++ + E L
Sbjct: 88 AYWGHLEIVEVL 99
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLEN 147
G TPL +A GH ++V VLL++ D D G+TPL +A GH ++V VLL+N
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G+T AA GHL+ + LKN D+ +K G+L +V LL GA+V
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 64 DSATKKGNTALHIA 77
++ K G TA I+
Sbjct: 140 NAQDKFGKTAFDIS 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 72/121 (59%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + G TPLH+ + G+ + +LL ADVN S KSG TPLH+A++ G
Sbjct: 33 LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+ A+ + +G TPLHLAA +I+ +LL+ GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAKP 430
G+TPLHL + + E+LLK A V+ K ++I LL+YGA
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
NA G+TPLHL+A +GH ++ +LL++GADV+ K G TA I+ G + E L+
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + G+TPLH+ G + I+ LL+ A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL+ GA V+A +G+T L +A + G++ + E L + +
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL-LKYGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ +GHL ++ LL A+V+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 68 KKGNTALHIASLGEFL--VPVWL---GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEN-- 118
K G T LH+A+ L V V L D D G+TPL +A + GH ++V VLL+
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA G TPLHL + GH ++ +LL++ ADV+ + K G T L +A
Sbjct: 28 DEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLA 87
Query: 478 QKLGYISVEESL 489
G++ + E L
Sbjct: 88 AYRGHLEIVEVL 99
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 34/159 (21%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKDGF--TPLAVAMQQGHDKVVAVLLEN----DTRGKVR 154
A + G D V +L+ N D D F TPL + + GH +++ VLL+ + K
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 155 LPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
LH L++ G+ L+K + + G+
Sbjct: 81 WTPLH--------------------------LAAYRGHLEIVEVLLKYGADVNAMDYQGY 114
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
TPLH+A+ G+ + +LL ADVN K G T ++
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
G TPL + + GH +++ VLL+ + K G+TPL +A +GH ++V VLL+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T AA GHL+ + LK D+ ++DGHL +V LL GA+V
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 64 DSATKKGNTALHIA 77
++ K G TA I+
Sbjct: 140 NAQDKFGKTAFDIS 153
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 79/133 (59%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + + G+TPLH+A+++G+ + +LL ADVN G+TPLH+A+ G
Sbjct: 33 LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ +V LL+N A+ + G TPLHLAA +I+ +LL++GA V+A+ + G TA I
Sbjct: 93 LEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
+ G + E L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN S G TPLH+A++ G + IV LL+N A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +++ +LL+NGA V+A G T L +A +G++ + E L + +
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
G TPLHL A + + E+LLKN A V+ TP + ++ LL+ GA
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
NA GFTPLHL+A+ GH ++ +LL+HGADV+ K G TA I+ G + E L+
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A G T L +A G++ + E L + +
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVL-LKNGADVNADDSL 79
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G T L +A G++ V E L+ D NG TPLHL A + + E+L
Sbjct: 80 GVTPLHLAADRGHLEV-------VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
LK +GA NA+ G T +S G+ D++ +L
Sbjct: 133 LK-------------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 11/105 (10%)
Query: 53 VTELLSRGANVDSATKKGNTALHIAS-LGEF-LVPVWL---GDFKQGD--GFTPLAVAMQ 105
V L++ GA+V+++ G T LH+A+ G +V V L D D G TPL +A
Sbjct: 30 VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAAD 89
Query: 106 QGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
+GH +VV VLL+N D D GFTPL +A GH ++V VLL+
Sbjct: 90 RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 26/155 (16%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPAL 158
A + G D V +L+ N D D G+TPL +A GH ++V VLL+N
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKN----------- 69
Query: 159 HIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLH 218
+ S V P L++ G+ L+KN + + +GFTPLH
Sbjct: 70 ----------GADVNADDSLGVTPLH-LAADRGHLEVVEVLLKNGADVNANDHNGFTPLH 118
Query: 219 IASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
+A++ G+ + +LL ADVN K G T ++
Sbjct: 119 LAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA G+TPLHL+A GH ++ +LL++GADV+ G T L +A
Sbjct: 28 DEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLA 87
Query: 478 QKLGYISVEESL 489
G++ V E L
Sbjct: 88 ADRGHLEVVEVL 99
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T AA GHL+ + LKN D+ + GHL VV LL GA+V
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 64 DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTR 121
++ +GFTPL +A GH ++V VLL++ D
Sbjct: 107 NA--------------------------NDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 122 GKDGF--TPLAVAMQQGHDKVVAVL 144
+D F T +++ G++ + +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 76/133 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + G+TPLH+A+++G+ + +LL ADVN G TPLH+A+ G
Sbjct: 33 LMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+N A+ + G TPLHLAA +I+ +LL+ GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
+ G + E L
Sbjct: 153 SINNGNEDLAEIL 165
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + G TPLH+A++ G + IV LL+N A+ + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL+NGA V+A+ G T L +A G++ + E L + +
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL-LKYGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISINNGNEDLAEILQ 166
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
G TPLHL A + + E+LLKN A V+ TP + +I LL+ GA
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
NA+ G TPLHL+A+ GH ++ +LL++GADV+ K G TA I+ G + E L+
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQ 166
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA + D +RIL+ NGA V+A G T L +A G++ + E L + +
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVL-LKNGADVNAYDTL 79
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G T L +A G++ + E L+ D K NG+TPLHL A + + E+L
Sbjct: 80 GSTPLHLAAHFGHLEI-------VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
LK YGA NA+ G T +S + G+ D++ +L
Sbjct: 133 LK-------------------YGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 59/200 (29%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPAL 158
A + G D V +L+ N D D G+TPL +A GH ++V VLL+N
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKN----------- 69
Query: 159 HIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLH 218
V+ L ST PLH
Sbjct: 70 ------------------GADVNAYDTLGST--------------------------PLH 85
Query: 219 IASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR 278
+A+H+G+ + +LL ADVN +G+TPLH+A+ G + IV LL+ A+ +
Sbjct: 86 LAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Query: 279 GETPLHLAARANQTDIIRIL 298
G+T ++ D+ IL
Sbjct: 146 GKTAFDISINNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + GHL +V LL GA+V++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 68 KKGNTALHIAS-LGEF-LVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
G+T LH+A+ G +V V L + K +G TPL +A +GH ++V VLL+
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA V G+TPLHL+A GH ++ +LL++GADV+ G T L +A
Sbjct: 28 DEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLA 87
Query: 478 QKLGYISVEESL 489
G++ + E L
Sbjct: 88 AHFGHLEIVEVL 99
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T AA GHL+ + LKN D+ + GHL +V LL GA+V
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 64 DSATKKGNTALHIA 77
++ K G TA I+
Sbjct: 140 NAQDKFGKTAFDIS 153
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 73/139 (52%)
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
+ ++ GN L++N +P+ + G TPLH A+ G++ + +LL K AD N
Sbjct: 9 IEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
G TPLH A+ G IV LL A+P+ G TPLH AA +I+++LL GA
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 305 VDARAREGHTALSIAQKLG 323
+ +G T L +A++ G
Sbjct: 129 PNTSDSDGRTPLDLAREHG 147
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 56/108 (51%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ GN+ LL+ AD N S G TPLH A+ G IV LL A+P+ G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISV 327
TPLH AA +I+++LL GA +A+ +G T L A + G+ +
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI 118
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
+P+ G TPLH A+ G++ + +LL K AD N G TPLH A+ G IV
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
LL A+P+ G TPL LA +I+++L + G ++
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
+ AA G+ D++ + L+N D +++GH +V LLS+GA+ ++
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 68 KKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLL---- 116
G T LH A+ + +V + L + K DG TPL A + GH ++V +LL
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 117 ENDTRGKDGFTPLAVAMQQGHDKVVAVL 144
+ +T DG TPL +A + G++++V +L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAK 429
+G TPLH A+ + +LLL A + TP +I LL GA
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLG 481
PNA+ G TPLH +A GH ++ +LL GAD + + +G T L +A++ G
Sbjct: 96 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHG 147
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 45 SKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGF 97
+++G+ V +LL GA+ +++ G T LH A+ + +V + L + K DG
Sbjct: 12 AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 98 TPLAVAMQQGHDKVVAVLL----ENDTRGKDGFTPLAVAMQQGHDKVVAVLL 145
TPL A + GH ++V +LL + + + DG TPL A + GH ++V +LL
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D LLE GA PNA G TPLH +A GH ++ +LL GAD + +G T L A
Sbjct: 18 DRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYA 77
Query: 478 QKLGYISV 485
+ G+ +
Sbjct: 78 AENGHKEI 85
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 63/210 (30%)
Query: 253 ASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREG 312
A+ G + V LL+N A+P+ G TPLH AA +I+++LL GA +A+
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK---- 66
Query: 313 HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372
+G T L A + G+ + + L
Sbjct: 67 ------------------------------DSDGRTPLHYAAENGHKEIVK--------L 88
Query: 373 IIAKG--DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKP 430
+++KG K +G TPLH A+ + +LLL GA P
Sbjct: 89 LLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK-------------------GADP 129
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHG 460
N G TPL L+ G+ ++ +L + G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 44/280 (15%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPLH+A+ Y + +LL ADV+ K GL PLH A G + LL++ A +
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
+ TPLH AA N+ ++ +LL +GA G +A+ +A
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT------------- 166
Query: 335 ERSQLKKR---GREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL 391
+L++R +GH+ L A+ E L V +TL + + ++ ++ T LH
Sbjct: 167 --PELRERLTYEFKGHSLLQAAR-------EADLAKVKKTLALEIINFKQPQSHETALH- 216
Query: 392 CA----QEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKPNAE 433
CA R VAELLL+ A V+ TP + D+ L ++GAK NA
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL 276
Query: 434 SVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTA 473
G T LH +A GH +LL +G+D S + +G TA
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 111/290 (38%), Gaps = 44/290 (15%)
Query: 66 ATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGK 123
A + GN +A L V D G TPL +A ++V +LL++ D K
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASD---GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 124 D--GFTPLAVAMQQGHDKVVAVLL------------------ENDTRGKVRLPALHIXXX 163
D G PL A GH +V +LL E ++ +V + +L +
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL-LLSH 146
Query: 164 XXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS------------- 210
+ + + P L G L++ D+
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206
Query: 211 --KSGFTPLHIAS---HYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
+S T LH A H + VA +LL K A+VN K +TPLHVA+ +++ L
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA 315
++ A + G+T LH AA A R+LL G+ + +G TA
Sbjct: 267 HKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L++ N + +K TPLH+A+ + V +L A +N G T LH A+ G
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH 292
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA 315
+ LL ++P I +++G T + A Q + + VD R E A
Sbjct: 293 LQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSDVDYRLLEASKA 349
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
TPLHL+A + +LL+HGADV K G L A G+ V E L
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%)
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
+ ++ GN L++N + + + G TPLH+A+ G++ V +LL + AD N
Sbjct: 9 IEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
G TPLH+A+ G +V LL A+P+ G+TPLHLAA +++++LL GA
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 305 VDARAREGHTALSIAQKLGYISV 327
+ +G T L +A++ G V
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEV 151
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ GN+ LL+ ADVN S G TPLH+A+ G +V LL A+P+ G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
+TPLHLAA +++++LL GA +A+ +G T L +A + G+ V + L ++ +
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL-LSQGADP 129
Query: 340 KKRGREGHTALSIAQKLGYISV 361
+G T L +A++ G V
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEV 151
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++ G+ L+ +P+ G TPLH+A+ G++ V +LL + AD N
Sbjct: 43 LAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 102
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
G TPLH+A+ G +V LL A+P+ G TPL LA +++++L + G +
Sbjct: 103 GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Query: 306 D 306
+
Sbjct: 163 E 163
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
+ AA G+ D++ + L+N D+ +++GH VV LLS+GA+ ++
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 68 KKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLL---- 116
G T LH+A+ + +V + L + K DG TPL +A + GH +VV +LL
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 117 ENDTRGKDGFTPLAVAMQQGHDKVVAVL 144
+ +T DG TPL +A + G+++VV +L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAK 429
+G TPLHL A+ V +LLL A + TP + ++ LL GA
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
PNA+ G TPLHL+A GH ++ +LL GAD + + +G T L +A++ G V
Sbjct: 96 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEV 151
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 11/112 (9%)
Query: 45 SKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG--EFLVPVWLG-----DFKQGDGF 97
+++G+ V +LL GA+V+++ G T LH+A+ + +V + L + K DG
Sbjct: 12 AENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 71
Query: 98 TPLAVAMQQGHDKVVAVLL----ENDTRGKDGFTPLAVAMQQGHDKVVAVLL 145
TPL +A + GH +VV +LL + + + DG TPL +A + GH +VV +LL
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AA D ++ LL NGA V+A +G T L +A + G+ V + L ++ + + +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLL-LSQGADPNAKDSD 69
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G T L +A + G+ K V + L+ D K +G TPLHL A+ V +LL
Sbjct: 70 GKTPLHLAAENGH-------KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
L GA PN G TPL L+ G+ ++ +L + G
Sbjct: 123 LS-------------------QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D LLE GA NA G TPLHL+A GH ++ +LL GAD + +G T L +A
Sbjct: 18 DRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 77
Query: 478 QKLGYISV 485
+ G+ V
Sbjct: 78 AENGHKEV 85
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
+A G+ D LLE+GADV+ + +G T L +A + G+ V
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEV 52
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
LI N + + +G TPLH+A+ G+ + +LL ADV+ + G TPLH+A+ G
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+ A+ + + G TPLHLAA +I+ +LL+ GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN +GLTPLH+A+ G + IV LL++ A+ D V G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL+ GA V+A G T L +A G++ + E L + +
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL-LKYGADV 139
Query: 340 KKRGREGHTALSIA 353
+ + G TA I+
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 14/107 (13%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
GLTPLHL A + + E+LLK+ A VD TP + +I LL+YGA
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
NA + G TPLHL+A EGH ++ +LL++GADV+ K G TA I+
Sbjct: 107 NAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 26/168 (15%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A G T L +A G++ + E L + +
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVL-LKHGADVDAADVY 79
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
G T L +A G++ + E L L G TPLHL A E + + E+LL
Sbjct: 80 GFTPLHLAAMTGHLEIVEVL------LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
K YGA NA+ G T +S G+ D++
Sbjct: 134 K-------------------YGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + GHL +V LL GA+VD+A
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 68 KKGNTALHIASLGEFL--VPVWL---GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEN-- 118
G T LH+A++ L V V L D D G TPL +A +GH ++V VLL+
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKV 140
D +D F T +++ G++ +
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDL 161
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++ +G+ L+K+ + D GFTPLH+A+ G+ + +LL ADVN +
Sbjct: 53 LAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT 112
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
G TPLH+A+ G + IV LL+ A+ + G+T ++ D+ +
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA G TPLHL+A GH ++ +LL+HGADV A G T L +A
Sbjct: 28 DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLA 87
Query: 478 QKLGYISVEESL 489
G++ + E L
Sbjct: 88 AMTGHLEIVEVL 99
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
G TPL +A GH ++V VLL++ D D GFTPL +A GH ++V VLL+
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T AA GHL+ + LK D+ + +GHL +V LL GA+V
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 64 DSATKKGNTALHIA 77
++ K G TA I+
Sbjct: 140 NAQDKFGKTAFDIS 153
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T AA +GHL+ + LK+ D+ + GHL +V LL GA+V
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 64 DSATKKGNTALHIAS 78
++ G+T LH+A+
Sbjct: 107 NAFDMTGSTPLHLAA 121
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 74/139 (53%)
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
+ ++ GN LI+N + + + G TPLH A+ G++ + +L+ K ADVN
Sbjct: 9 IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 68
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
G TPLH A+ G IV L+ A+ + G TPLH AA+ +I+++L+ GA
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 305 VDARAREGHTALSIAQKLG 323
V+ +G T L +A++ G
Sbjct: 129 VNTSDSDGRTPLDLAREHG 147
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ GN+ L++ ADVN S G TPLH A+ G IV L+ A+ + G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLH AA+ +I+++L+ GA V+A+ +G T L A K G+ + + L ++ + +
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL-ISKGADV 129
Query: 340 KKRGREGHTALSIAQKLG 357
+G T L +A++ G
Sbjct: 130 NTSDSDGRTPLDLAREHG 147
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
+ AA G+ D++ + ++N D+ +K+GH +V L+S+GA+V++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 68 KKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
G T LH A+ + +V + + + K DG TPL A ++GH ++V +L+
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVL 144
+T DG TPL +A + G++++V +L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 207 DVTSKS--GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
DV +K G TPLH A+ G++ + +L+ K ADVN G TPLH A+ G IV
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
L+ A+ + G TPL LA +I+++L + G ++
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
+G TPLH A+E + +LL+ A V NA+ G TPLH
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKGADV-------------------NAKDSDGRTPLHY 76
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
+A EGH ++ +L+ GADV+ +G T L A K G+ +
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI 118
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+E GA NA G TPLH +A EGH ++ +L+ GADV+ +G T L A
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA 77
Query: 478 QKLGYISV 485
K G+ +
Sbjct: 78 AKEGHKEI 85
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 40/149 (26%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE---- 146
DG TPL A ++GH ++V +L+ + + DG TPL A ++GH ++V +L+
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Query: 147 ---NDTRGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNE 203
D+ G R P LH ++ G+ LI
Sbjct: 96 VNAKDSDG--RTP-LH--------------------------YAAKEGHKEIVKLLISKG 126
Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANIL 232
+ + + G TPL +A +GNE + +L
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + T G TPLH+A+ G+ + +LL ADVN G TPLH+A+ G
Sbjct: 33 LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL++ A+ + G TPLHLAA +I+ +LL+ GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 88/206 (42%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A
Sbjct: 21 AARAGQDDEVRILMANGADVNAT----------------------------------DWL 46
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVGVAELL 404
GHT L +A K G++ + E L+ D N G TPLHL A + + E+L
Sbjct: 47 GHTPLHLAAKTGHLEI-------VEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
LK +GA NA+ GFTPLHL+A +GH ++ +LL++GADV+
Sbjct: 100 LK-------------------HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
K G TA I+ G + E L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + G TPLH+A+ G + IV LL+ A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL++GA V+A+ EG T L +A G++ + E L + +
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL-LKYGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ +K GHL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 68 KKGNTALHIASLGEFL--VPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
G T LH+A+ L V V L + K +GFTPL +A GH ++V VLL+
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++ TG+ L+K + + G TPLH+A+ G+ + +LL ADVN
Sbjct: 53 LAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE 112
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
G TPLH+A++ G + IV LL+ A+ + G+T ++ D+ IL +
Sbjct: 113 GFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKDGF--TPLAVAMQQGHDKVVAVLLE 146
G TPL +A + GH ++V VLL+ D D + TPL +A GH ++V VLL+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 76/133 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + G TPLH+A+ G+ + +LL ADVN +G TPLH+A+ +G
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH 80
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+ A+ + G TPL+LAA +I+ +LL++GA V+A+ + G TA I
Sbjct: 81 LEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140
Query: 319 AQKLGYISVEESL 331
+ +G + E L
Sbjct: 141 SIDIGNEDLAEIL 153
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ AD N G TPLH+A+ +G + IV LL+N A+ + G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL+ GA V+A+ G T L +A G++ + E L + +
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL-LKHGADV 127
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ +G + E L+
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
G TPLH+ A + + E+LL+N A V+ TP + +I LL+YGA
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
NA+ G TPL+L+A GH ++ +LL+HGADV+ K G TA I+ +G + E L+
Sbjct: 95 NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D + GHL +V LL GA+V++
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 68 KKGNTALHI-ASLGEF-LVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
G T LH+ ASLG +V V L + K G TPL +A GH ++V VLL++
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA G TPLH++A+ GH ++ +LL +GADV+ G T L +A
Sbjct: 16 DEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLA 75
Query: 478 QKLGYISVEESL 489
LG++ + E L
Sbjct: 76 ASLGHLEIVEVL 87
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 40/166 (24%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLEN-------DTRG 151
A + G D V +L+ N D D G TPL +A GH ++V VLL N DT G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 152 KVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
L L+++ G+ L+K + +
Sbjct: 69 TTPLH-----------------------------LAASLGHLEIVEVLLKYGADVNAKDA 99
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
+G TPL++A+++G+ + +LL ADVN K G T ++ +G
Sbjct: 100 TGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIG 145
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 73/133 (54%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + G TPLH+A+ G+ + +LL ADVN G TPLH+A+ G
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+ A+ + G TPLHLAA +I+ +LL++GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 319 AQKLGYISVEESL 331
+ G + E L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 86/206 (41%), Gaps = 61/206 (29%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A +
Sbjct: 21 AARAGQDDEVRILMANGADVNAH----------------------------------DDQ 46
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G T L +A +G+ + E L+ D + +G TPLHL A + + E+L
Sbjct: 47 GSTPLHLAAWIGHPEI-------VEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS 464
LK YGA NA+ G TPLHL+A GH ++ +LL+HGADV+
Sbjct: 100 LK-------------------YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 465 HAAKEGHTALSIAQKLGYISVEESLK 490
K G TA I+ G + E L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN G TPLH+A+++G IV LL++ A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA +I+ +LL+ GA V+A+ G T L +A G++ + E L + +
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL-LKHGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 27/110 (24%)
Query: 56 LLSRGANVDSATKKGNTALHIASLGEFLVPVWLG---------------DFKQGDGFTPL 100
L++ GA+V++ +G+T LH+A+ W+G + + DG+TPL
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAA--------WIGHPEIVEVLLKHGADVNARDTDGWTPL 84
Query: 101 AVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
+A GH ++V VLL+ D +D G TPL +A +GH ++V VLL+
Sbjct: 85 HLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 34/145 (23%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN---- 147
G TPL +A GH ++V VLL++ + R DG+TPL +A GH ++V VLL+
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADV 106
Query: 148 DTRGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
+ + L LH L++ G+ L+K+ + +
Sbjct: 107 NAQDAYGLTPLH--------------------------LAADRGHLEIVEVLLKHGADVN 140
Query: 208 VTSKSGFTPLHIASHYGNEGVANIL 232
K G T I+ GNE +A IL
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 34/159 (21%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLEN----DTRGKVR 154
A + G D V +L+ N D D G TPL +A GH ++V VLL++ + R
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 155 LPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
LH L++ G+ L+K + + G
Sbjct: 81 WTPLH--------------------------LAADNGHLEIVEVLLKYGADVNAQDAYGL 114
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
TPLH+A+ G+ + +LL ADVN K G T ++
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 30/146 (20%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
+G T AA GH + + LK+ D+ + +GHL +V LL GA+
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD 105
Query: 63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DT 120
V++ + G TPL +A +GH ++V VLL++ D
Sbjct: 106 VNA--------------------------QDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 121 RGKDGF--TPLAVAMQQGHDKVVAVL 144
+D F T +++ G++ + +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 69/121 (57%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + G TPLH+A+ G+ + +LL ADVN SG TPLH+A+ G
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ IV LL+ A+ + G TPLHLAA +I+ +LL+ GA V+A+ + G TA I
Sbjct: 93 LEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 319 A 319
+
Sbjct: 153 S 153
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN G TPLH+A+ +G + IV LL+N A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLHLAA+ +I+ +LL+ GA V+A G T L +A G++ + E L + +
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL-LKYGADV 139
Query: 340 KKRGREGHTALSIAQKLGYISVEESLK 366
+ + G TA I+ G + E L+
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTKM-------DIATTLLEYGAKP 430
G TPLHL A+ + + E+LLKN A V+ TP + +I LL+YGA
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
NA+ G TPLHL+A GH ++ +LL++GADV+ K G TA I+ G + E L+
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+KN + + SG TPLH+A+ G+ + +LL ADVN G TPLH+A+ G
Sbjct: 66 LLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGH 125
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ IV LL+ A+ + G+T ++ D+ IL
Sbjct: 126 LEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ ++ GHL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 68 KKGNTALHIASLGEFL--VPVWL---GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEN-- 118
G+T LH+A+ L V V L D D G TPL +A GH ++V VLL+
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 119 DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
D +D F T +++ G++ + +L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NAE G TPLHL+A GH ++ +LL++GADV+ G T L +A
Sbjct: 28 DEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLA 87
Query: 478 QKLGYISVEESL 489
K G++ + E L
Sbjct: 88 AKRGHLEIVEVL 99
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 26/155 (16%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPAL 158
A + G D V +L+ N D +D G TPL +A + GH ++V VLL+N + AL
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN----GADVNAL 76
Query: 159 HIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLH 218
L++ G+ L+K + + G TPLH
Sbjct: 77 DFSGSTPLH------------------LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLH 118
Query: 219 IASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
+A+ G+ + +LL ADVN K G T ++
Sbjct: 119 LAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 121/255 (47%), Gaps = 36/255 (14%)
Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ 291
LL++ AD+N++ GLT LH A +++V +L++N AN + P G PLH AA
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALS 351
DI L+ GA V A EG T L IA++ E++ ++++ ++G + A
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEE-------EAMEELLQNEVNRQGVDIEAARK 171
Query: 352 IAQKLGYISVEESLKGVTETLIIAKGDGEKH-KNGLTPLHLCAQEDRVGVAELLLKNNAQ 410
+++ L+ + L + +H K+G T LH+ A + V +LL++
Sbjct: 172 EEERI-------MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ---- 220
Query: 411 VDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEG 470
+ D+ N + G+TPLH +A G + +L+E+ D+ K G
Sbjct: 221 ----ARYDV-----------NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265
Query: 471 HTALSIAQK--LGYI 483
TA +A + LGY+
Sbjct: 266 QTAFDVADEDILGYL 280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 92/224 (41%), Gaps = 41/224 (18%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
G T LH A N + L++ A++N G PLH A+ G ++I YL+ A+
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 273 DIPTVRGETPLHL----------------------AARANQTDIIRILLRNGAQV----- 305
G+TPL + AAR + RI+LR+ Q
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE---RIMLRDARQWLNSGH 189
Query: 306 --DAR-AREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVE 362
D R A+ G TAL +A GY V + L A R + + +G T L A G E
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGK---E 245
Query: 363 ESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLK 406
E+ + + E L + +K G T + A ED +G E L K
Sbjct: 246 EACRILVENLCDMEA---VNKVGQTAFDV-ADEDILGYLEELQK 285
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
LLE GA N +V G T LH + + + DM L+E+GA+++ EG L A GY
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 483 ISVEESL 489
+ + E L
Sbjct: 119 LDIAEYL 125
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 92/248 (37%), Gaps = 35/248 (14%)
Query: 48 GHLHVVTELLSRGANVDSATKKGNTALHIASLGE------FLVPVWLGDFKQGD--GFTP 99
G V LL RGA+++ A G TALH A + + FLV + Q D G+ P
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIP 109
Query: 100 LAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALH 159
L A G+ + L+ Q H V AV E DT +
Sbjct: 110 LHAAASCGYLDIAEYLIS----------------QGAH--VGAVNSEGDTPLDIAEEEAM 151
Query: 160 IXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT-SKSGFTPLH 218
E + + +L +G H DV +KSG T LH
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG-------HINDVRHAKSGGTALH 204
Query: 219 IASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR 278
+A+ G V +L+ R DVN G TPLH A+ G L++N + +
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV 264
Query: 279 GETPLHLA 286
G+T +A
Sbjct: 265 GQTAFDVA 272
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 96/269 (35%), Gaps = 63/269 (23%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
FL A +G ++++ L+ DI D ++ +V L+ GAN++
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 68 KKGNTALH-IASLGEFLVPVWLGDFKQG--------DGFTPLAVAM-------------Q 105
+G LH AS G + +L QG +G TPL +A +
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYL--ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161
Query: 106 QGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTR-GKVRLPALHIXXXX 164
QG D A E +D L GH ND R K ALH+
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWL----NSGH--------INDVRHAKSGGTALHV---- 205
Query: 165 XXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYG 224
++ G LI+ ++ ++ G+TPLH A+H+G
Sbjct: 206 ----------------------AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243
Query: 225 NEGVANILLDKRADVNFSAKSGLTPLHVA 253
E IL++ D+ K G T VA
Sbjct: 244 KEEACRILVENLCDMEAVNKVGQTAFDVA 272
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 41/234 (17%)
Query: 98 TPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKV 153
+PL A + GH + +L++ DT +D TPL A + H + V L +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL--------I 64
Query: 154 RLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTT-------GNAATGGYLIKN-EHN 205
+ AL VDP ST G+ YL+ N + +
Sbjct: 65 KAGAL---------------------VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD 103
Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
+ G+TP+ A+ Y + + +LL K +D+N LH A+F GC++I L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
L + + G++PLH+AAR N+ D + + L + V + +EG T L A
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 37/236 (15%)
Query: 248 TPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
+PLH A+ G ++I L+Q AN D + TPL AA N + ++ L++ GA VD
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 308 RAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKG 367
+ EG T L +A K G+ V + L + + + + G T + A + ++ + +
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK---- 128
Query: 368 VTETLIIAKG------DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIAT 421
L+++KG D E++ LH A V +AE+LL K D+
Sbjct: 129 ----LLLSKGSDINIRDNEEN----ICLHWAAFSGCVDIAEILL--------AAKCDL-- 170
Query: 422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+A ++ G +PLH++A E D + L +DV+ KEG T L A
Sbjct: 171 ---------HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 103/287 (35%), Gaps = 86/287 (29%)
Query: 11 AARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSATKKG 70
AA AGH+D ++ +I +++ HL V L+ GA VD +G
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77
Query: 71 NTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---DTRGKD--G 125
+T LH+A+ ++GH +VV LL N D +D G
Sbjct: 78 STCLHLAA--------------------------KKGHYEVVQYLLSNGQMDVNCQDDGG 111
Query: 126 FTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASV 185
+TP+ A + H +V +LL + +R
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKGSDINIR------------------------------- 140
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
NE N LH A+ G +A ILL + D++
Sbjct: 141 ---------------DNEEN---------ICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT 292
G +PLH+A+ + V+ L D++ + GETPL A+ +Q
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 81/209 (38%), Gaps = 58/209 (27%)
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
+PLH AA A DI +L++ GA +D + + T L + AAE + L
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPL--------------MEAAENNHL- 57
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
+ + Y+ + ++ D E G T LHL A++ V
Sbjct: 58 -------------EAVKYL--------IKAGALVDPKDAE----GSTCLHLAAKKGHYEV 92
Query: 401 AELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
+ LL N +MD+ N + G+TP+ + H D+ +LL G
Sbjct: 93 VQYLLSNG-------QMDV-----------NCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134
Query: 461 ADVSHAAKEGHTALSIAQKLGYISVEESL 489
+D++ E + L A G + + E L
Sbjct: 135 SDINIRDNEENICLHWAAFSGCVDIAEIL 163
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 2 GEGHTSFLRAARAGHLDKIIEHLKNN--VDIXXXXXXXXXXXXXXSKDGHLHVVTELLSR 59
EG T AA+ GH + ++++L +N +D+ ++ H+ +V LLS+
Sbjct: 75 AEGSTCLHLAAKKGHYE-VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 60 GANVDSATKKGNTALHIAS------LGEFLVPVWLGDFKQGD--GFTPLAVAMQQGHDKV 111
G++++ + N LH A+ + E L+ D + G +PL +A ++
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAARENRYDC 192
Query: 112 VAVLLENDT----RGKDGFTPLAVA 132
V + L D+ + K+G TPL A
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
+H+N +PLH A+ V + +L++ A +DT ++ TP
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-------------------DQRTP 47
Query: 441 LHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAK 500
L +A H + L++ GA V EG T L +A K G+ V + L + + +
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107
Query: 501 GDG 503
DG
Sbjct: 108 DDG 110
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%)
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
+ ++ GN LI+N + + + G TPLH A+ G++ V +L+ K ADVN
Sbjct: 9 IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
G TPLH A+ G +V L+ A+ + G TPLH AA +++++L+ GA
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 305 VDARAREGHTALSIAQKLGYISV 327
V+ +G T L +A++ G V
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEV 151
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ GN+ L++ ADVN S G TPLH A+ G +V L+ A+ + G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
TPLH AA +++++L+ GA V+A+ +G T L A + G+ V + L ++ + +
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL-ISKGADV 129
Query: 340 KKRGREGHTALSIAQKLGYISV 361
+G T L +A++ G V
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEV 151
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
+ AA G+ D++ + ++N D+ +++GH VV L+S+GA+V++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 68 KKGNTALHIASLG--EFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
G T LH A+ + +V + + + K DG TPL A + GH +VV +L+
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVL 144
+T DG TPL +A + G+++VV +L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 207 DVTSKS--GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
DV +K G TPLH A+ G++ V +L+ K ADVN G TPLH A+ G +V
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
L+ A+ + G TPL LA +++++L + G ++
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVD-------TPTK-------MDIATTLLEYGAK 429
+G TPLH A+ V +LL+ A V+ TP ++ L+ GA
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
NA+ G TPLH +A GH ++ +L+ GADV+ + +G T L +A++ G V
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEV 151
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+E GA NA G TPLH +A GH ++ +L+ GADV+ +G T L A
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA 77
Query: 478 QKLGYISVEESLKGVTETLIIAKG 501
+ G+ V + L+I+KG
Sbjct: 78 AENGHKEVVK--------LLISKG 93
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 40/149 (26%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE---- 146
DG TPL A + GH +VV +L+ + + DG TPL A + GH +VV +L+
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 147 ---NDTRGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNE 203
D+ G R P H ++ G+ LI
Sbjct: 96 VNAKDSDG--RTPLHH---------------------------AAENGHKEVVKLLISKG 126
Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANIL 232
+ + + G TPL +A +GNE V +L
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+G TPLH+A+ G+ V +LL+ ADVN K+G TPLH+A+ G + +V LL+ A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
+ G TPLHLAAR +++++LL GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%)
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
+G TPLH+A+ G + +V LL+ A+ + G TPLHLAAR +++++LL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 305 VDARAREGHTALSIAQKLGYISV 327
V+A+ + G T L +A + G++ V
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEV 83
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 19/102 (18%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
NG TPLHL A+ + V +LLL E GA NA+ G TPLHL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-------------------EAGADVNAKDKNGRTPLHL 41
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
+A GH ++ +LLE GADV+ K G T L +A + G++ V
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 83
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 27/117 (23%)
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
G T L +A + G++ V + L+ A D K KNG TPLHL A+ + V +L
Sbjct: 2 GRTPLHLAARNGHLEV-------VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL- 53
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA 461
LLE GA NA+ G TPLHL+A GH ++ +LLE GA
Sbjct: 54 ------------------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
+ K+G TPLH+A+ G+ V +LL+ ADVN K+G TPLH+A+ G + +V LL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 267 Q 267
+
Sbjct: 89 E 89
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 30/106 (28%)
Query: 45 SKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAM 104
+++GHL VV LL GA+V++ K G T LH+A+
Sbjct: 10 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-------------------------- 43
Query: 105 QQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
+ GH +VV +LLE + + K+G TPL +A + GH +VV +LLE
Sbjct: 44 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
+G TPL +A + GH +VV +LLE + + K+G TPL +A + GH +VV +LLE
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T AAR GHL+ + L+ D+ +++GHL VV LL GA+V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 64 DSATKKGNTALHIAS 78
++ K G T LH+A+
Sbjct: 62 NAKDKNGRTPLHLAA 76
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL ADVN + G TPLH+A+ +G + IV LL+N A+ + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
TPLHLAA A+ +I+ +LL++GA V+A+ + G TA I+ G + E L
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
G TPLHL A + + E+LLKN GA NA G TPLHL+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKN-------------------GADVNATGNTGRTPLHLA 87
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
A H ++ +LL+HGADV+ K G TA I+ G + E L+
Sbjct: 88 AWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L N + + G TPLH+A+ G+ + +LL ADVN + +G TPLH+A++
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ IV LL++ A+ + G+T ++ D+ IL
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVE 486
GA NA G TPLHL+A GH ++ +LL++GADV+ G T L +A ++ +
Sbjct: 37 GADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIV 96
Query: 487 ESL 489
E L
Sbjct: 97 EVL 99
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 64/172 (37%), Gaps = 61/172 (35%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL NGA V+A
Sbjct: 21 AARAGQDDEVRILTANGADVNAN----------------------------------DYW 46
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVGVAELL 404
GHT L +A LG++ + E L+ D N G TPLHL A D + + E+L
Sbjct: 47 GHTPLHLAAMLGHLE-------IVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVL 99
Query: 405 LKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
LK +GA NA+ G T +S G+ D++ +L
Sbjct: 100 LK-------------------HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ N D+ + GHL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 68 KKGNTALHIASLGEFL--VPVWL---GDFKQGDGF--TPLAVAMQQGHDKVVAVL 115
G T LH+A+ + L V V L D D F T +++ G++ + +L
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
G TPL +A GH ++V VLL+N + G G TPL +A H ++V VLL+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK 101
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
GHT AA GHL+ + LKN D+ + HL +V LL GA+V
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 64 DSATKKGNTALHIA 77
++ K G TA I+
Sbjct: 107 NAQDKFGKTAFDIS 120
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+A G D +L +GADV+ GHT L +A LG++ + E L
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVL 66
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN K GLTPLH+A+ + IV LL+N A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
ETPLHL A +I+ +LL++GA V+A+ + G TA I+
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 19/108 (17%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
K GLTPLHL A D + + E+LLKN GA NA G TPLH
Sbjct: 45 KVGLTPLHLAAMNDHLEIVEVLLKN-------------------GADVNAIDAIGETPLH 85
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
L A GH ++ +LL+HGADV+ K G TA I+ G + E L+
Sbjct: 86 LVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + K G TPLH+A+ + + +LL ADVN G TPLH+ + G
Sbjct: 33 LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ IV LL++ A+ + G+T ++ D+ IL
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + + HL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 68 KKGNTALHIASLGEFL--VPVWL---GDFKQGDGF--TPLAVAMQQGHDKVVAVL 115
G T LH+ ++ L V V L D D F T +++ G++ + +L
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
G TPL +A H ++V VLL+N D D G TPL + GH ++V VLL+
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLEN 147
A + G D V +L+ N D +D G TPL +A H ++V VLL+N
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
SK G TPLH A+ G+ LL K ADVN +K G TPLH+A+ G IV LL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
A+ + + G TP HLA + +I+++L GA V+AR+
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 241 FSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
+ +K G TPLH A+ G V LL A+ + + G TPLHLAA+ +I+++LL
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 301 NGAQVDARAREGHTALSIAQKLGYISVEESLGA 333
GA V+AR+++G+T +A+K G+ + + L A
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
K+G TPLH A+ G AE + K LL GA NA S G TPLH
Sbjct: 7 KDGNTPLHNAAKN---GHAEEVKK----------------LLSKGADVNARSKDGNTPLH 47
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
L+A GHA++ +LL GADV+ +K+G+T +A+K G+
Sbjct: 48 LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 30/104 (28%)
Query: 45 SKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAM 104
+K+GH V +LLS+GA+V++ +K GNT LH+ A
Sbjct: 17 AKNGHAEEVKKLLSKGADVNARSKDGNTPLHL--------------------------AA 50
Query: 105 QQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVL 144
+ GH ++V +LL + R KDG TP +A + GH ++V +L
Sbjct: 51 KNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
+ SK G TPLH+A+ G+ + +LL K ADVN +K G TP H+A G IV L
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 1 SGEGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRG 60
S +G+T AA+ GH +++ + L D+ +K+GH +V LL++G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 61 ANVDSATKKGNTALHIA 77
A+V++ +K GNT H+A
Sbjct: 66 ADVNARSKDGNTPEHLA 82
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLL 145
DG TPL A + GH + V LL + R KDG TPL +A + GH ++V +LL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 29/123 (23%)
Query: 344 REGHTALSIAQKLGYISVEESLKGVTETLIIAKGD--GEKHKNGLTPLHLCAQEDRVGVA 401
++G+T L A K G+ EE K +++KG + K+G TPLHL A+ +
Sbjct: 7 KDGNTPLHNAAKNGH--AEEVKK------LLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 402 ELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA 461
+LLL A V NA S G TP HL+ GH ++ +L GA
Sbjct: 59 KLLLAKGADV-------------------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Query: 462 DVS 464
DV+
Sbjct: 100 DVN 102
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 30/122 (24%)
Query: 123 KDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIXXXXXXXXXXXXXXEVSC 178
KDG TPL A + GH + V LL + R K LH
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLH------------------- 47
Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
L++ G+A L+ + + SK G TP H+A G+ + +L K AD
Sbjct: 48 -------LAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Query: 239 VN 240
VN
Sbjct: 101 VN 102
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN +G+TPLH+A+ G + IV LL++ A+ + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
TPLHLAA +I+ +LL GA V+A+ + G TA I+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 19/106 (17%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
G+TPLHL A+ + + E+LLK +GA NA + G TPLHL+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLK-------------------HGADVNASDIWGRTPLHLA 87
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
A+ GH ++ +LLE+GADV+ K G TA I+ G + E L+
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA AG TPLHL+A GH ++ +LL+HGADV+ + G T L +A
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLA 87
Query: 478 QKLGYISVEESL 489
+G++ + E L
Sbjct: 88 ATVGHLEIVEVL 99
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + +G TPLH+A+ G+ + +LL ADVN S G TPLH+A+ +G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ IV LL+ A+ + G+T ++ D+ IL
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 30/141 (21%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L A RAG D++ + N D+ +K GHL +V LL GA+V+++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS- 76
Query: 68 KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKDG 125
+W G TPL +A GH ++V VLLE D +D
Sbjct: 77 -----------------DIW--------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Query: 126 F--TPLAVAMQQGHDKVVAVL 144
F T +++ G++ + +L
Sbjct: 112 FGKTAFDISIDNGNEDLAEIL 132
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
G TPL +A ++GH ++V VLL++ D D G TPL +A GH ++V VLLE
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
A + G D V +L+ N D D G TPL +A ++GH ++V VLL+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN +G+TPLH+A+ G + IV LL++ A+ + + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
TPLHLAA +I+ +LL GA V+A+ + G TA I+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 19/106 (17%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
G+TPLHL A+ + + E+LLK +GA NA + G TPLHL+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLK-------------------HGADVNARDIWGRTPLHLA 87
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
A+ GH ++ +LLE+GADV+ K G TA I+ G + E L+
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA AG TPLHL+A GH ++ +LL+HGADV+ G T L +A
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLA 87
Query: 478 QKLGYISVEESL 489
+G++ + E L
Sbjct: 88 ATVGHLEIVEVL 99
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + +G TPLH+A+ G+ + +LL ADVN G TPLH+A+ +G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ IV LL+ A+ + G+T ++ D+ IL
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 30/141 (21%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L A RAG D++ + N D+ +K GHL +V LL GA+V++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR- 76
Query: 68 KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKDG 125
+W G TPL +A GH ++V VLLE D +D
Sbjct: 77 -----------------DIW--------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Query: 126 F--TPLAVAMQQGHDKVVAVL 144
F T +++ G++ + +L
Sbjct: 112 FGKTAFDISIDNGNEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
G TPL +A ++GH ++V VLL++ D +D G TPL +A GH ++V VLLE
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
A + G D V +L+ N D D G TPL +A ++GH ++V VLL+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI 263
+ PD + GFTPL AS +G LL+ AD + AK + L +AS G +IV
Sbjct: 30 NKPD---ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
LL+ D + +I G TPL A R N + LL GA + A G+T + +A LG
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Query: 324 YISVEE 329
Y V++
Sbjct: 147 YRKVQQ 152
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
VN + G TPL AS G + V +LL+ A+P I E+ L LA+ TDI+ +L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358
L ++ G T L A + ++ E+L A + L G+T + +A LGY
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL-LARGADLTTEADSGYTPMDLAVALGY 147
Query: 359 ISVEESLK 366
V++ ++
Sbjct: 148 RKVQQVIE 155
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
DI LLE N G TPL + H LL GAD++ A G+T + +A
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Query: 478 QKLGYISVEESLK 490
LGY V++ ++
Sbjct: 143 VALGYRKVQQVIE 155
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 29/158 (18%)
Query: 125 GFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPAS 184
GFTPL A G + V LLE + ++ + A
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHI----------------------LAKERESAL 73
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
L+ST G G L++ + + ++ +G TPL A + LL + AD+ A
Sbjct: 74 SLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD 133
Query: 245 SGLTPLHVASFMGCMNI-------VIYLLQNDANPDIP 275
SG TP+ +A +G + ++ L Q++ P P
Sbjct: 134 SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN +G+TPLH+A+ G + IV LL++ A+ + G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
TPLHLAA +I+ +LL GA V+A+ + G TA I+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
G+TPLHL A+ + + E+LLK +GA NA G TPLHL+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLK-------------------HGADVNASDSWGRTPLHLA 87
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
A+ GH ++ +LLE+GADV+ K G TA I+ G + E L+
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA AG TPLHL+A GH ++ +LL+HGADV+ + G T L +A
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLA 87
Query: 478 QKLGYISVEESL 489
+G++ + E L
Sbjct: 88 ATVGHLEIVEVL 99
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + +G TPLH+A+ G+ + +LL ADVN S G TPLH+A+ +G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ IV LL+ A+ + G+T ++ D+ IL
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 30/141 (21%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L A RAG D++ + N D+ +K GHL +V LL GA+V+++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 68 KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKDG 125
G T LH+A+ GH ++V VLLE D +D
Sbjct: 78 SWGRTPLHLAA--------------------------TVGHLEIVEVLLEYGADVNAQDK 111
Query: 126 F--TPLAVAMQQGHDKVVAVL 144
F T +++ G++ + +L
Sbjct: 112 FGKTAFDISIDNGNEDLAEIL 132
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
G TPL +A ++GH ++V VLL++ D D G TPL +A GH ++V VLLE
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 36/139 (25%)
Query: 103 AMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE-----NDTRGKV 153
A + G D V +L+ N D D G TPL +A ++GH ++V VLL+ N +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 154 RLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSG 213
R P LH L++T G+ L++ + + K G
Sbjct: 81 RTP-LH--------------------------LAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 214 FTPLHIASHYGNEGVANIL 232
T I+ GNE +A IL
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + GLTPLH+A+ +G + IV LL+ A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
TPLHLAA +I+ +LL++GA V+A+ + G TA I+
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 19/108 (17%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
++GLTPLHL AQ + + E+LLK YGA NAE G TPLH
Sbjct: 45 EDGLTPLHLAAQLGHLEIVEVLLK-------------------YGADVNAEDNFGITPLH 85
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
L+A GH ++ +LL+HGADV+ K G TA I+ G + E L+
Sbjct: 86 LAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + + G TPLH+A+ G+ + +LL ADVN G+TPLH+A+ G
Sbjct: 33 LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ IV LL++ A+ + G+T ++ D+ IL
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA G TPLHL+A GH ++ +LL++GADV+ G T L +A
Sbjct: 28 DEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLA 87
Query: 478 QKLGYISVEESL 489
G++ + E L
Sbjct: 88 AIRGHLEIVEVL 99
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN--DTRGKDGF--TPLAVAMQQGHDKVVAVLLE 146
DG TPL +A Q GH ++V VLL+ D +D F TPL +A +GH ++V VLL+
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 30/141 (21%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ ++ GHL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 68 KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKDG 125
G T LH+A++ +GH ++V VLL++ D +D
Sbjct: 78 NFGITPLHLAAI--------------------------RGHLEIVEVLLKHGADVNAQDK 111
Query: 126 F--TPLAVAMQQGHDKVVAVL 144
F T +++ G++ + +L
Sbjct: 112 FGKTAFDISIDNGNEDLAEIL 132
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 103 AMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPAL 158
A + G D V +L+ N + +DG TPL +A Q GH ++V VLL+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK------------ 68
Query: 159 HIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLH 218
E + + P L++ G+ L+K+ + + K G T
Sbjct: 69 ---------YGADVNAEDNFGITPLH-LAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFD 118
Query: 219 IASHYGNEGVANIL 232
I+ GNE +A IL
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+A G D +L+ +GADV+ ++G T L +A +LG++ + E L
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL 66
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+G++PLHIA+ G + + LL K A VN ++G TPLH A+ I + LL+ AN
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
PD T +H AA +I ILL A + + EG+T L +A
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 77/208 (37%), Gaps = 40/208 (19%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
T + T LH A G+ + LL VN +G +PLH+A+ G IV LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
A + G TPLH AA N+ +I +LL GA DA+ TA+ A G
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG----- 150
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTP 388
+LK + L + G TP
Sbjct: 151 -----------------------------------NLKMIHILLYYKASTNIQDTEGNTP 175
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTK 416
LHL E+RV A+LL+ A + K
Sbjct: 176 LHLACDEERVEEAKLLVSQGASIYIENK 203
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 83/212 (39%), Gaps = 54/212 (25%)
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
T LH A A T+I+ LL+ G V+ + G + L IA G + ++L
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL--------- 92
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
LG KG + ++NG TPLH A ++R +
Sbjct: 93 ---------------LG--------KGAQVNAV--------NQNGCTPLHYAASKNRHEI 121
Query: 401 AELLLKNNAQVDTP-----TKMDIATT---------LLEYGAKPNAESVAGFTPLHLSAS 446
A +LL+ A D T M A LL Y A N + G TPLHL+
Sbjct: 122 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 181
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
E + + +L+ GA + KE T L +A+
Sbjct: 182 EERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 28/197 (14%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKDGFTPLAVAMQQGHDKVVAVLLENDT 149
D T L A GH ++V LL+ ND + G++PL +A G D++V LL
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALL---- 93
Query: 150 RGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT 209
GK + CT P +S + L++ NPD
Sbjct: 94 -GK--------------GAQVNAVNQNGCT--PLHYAASKNRH-EIAVMLLEGGANPDAK 135
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
T +H A+ GN + +ILL +A N G TPLH+A + L+
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195
Query: 270 ANPDIPTVRGETPLHLA 286
A+ I +TPL +A
Sbjct: 196 ASIYIENKEEKTPLQVA 212
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
+ T+ A AGH + + L+ V + + G +V LL +GA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98
Query: 63 VDSATKKGNTALHIASLG---EFLVPVWLG----DFKQGDGFTPLAVAMQQGHDKVVAVL 115
V++ + G T LH A+ E V + G D K T + A +G+ K++ +L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158
Query: 116 L----ENDTRGKDGFTPLAVAMQQ 135
L + + +G TPL +A +
Sbjct: 159 LYYKASTNIQDTEGNTPLHLACDE 182
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+G++PLHIA+ G + + LL K A VN ++G TPLH A+ I + LL+ AN
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
PD T +H AA +I ILL A + + EG+T L +A
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 77/208 (37%), Gaps = 40/208 (19%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
T + T LH A G+ + LL VN +G +PLH+A+ G IV LL
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
A + G TPLH AA N+ +I +LL GA DA+ TA+ A G
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG----- 151
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTP 388
+LK + L + G TP
Sbjct: 152 -----------------------------------NLKMIHILLYYKASTNIQDTEGNTP 176
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTK 416
LHL E+RV A+LL+ A + K
Sbjct: 177 LHLACDEERVEEAKLLVSQGASIYIENK 204
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 83/212 (39%), Gaps = 54/212 (25%)
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
T LH A A T+I+ LL+ G V+ + G + L IA G + ++L
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL--------- 93
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
LG KG + ++NG TPLH A ++R +
Sbjct: 94 ---------------LG--------KGAQVNAV--------NQNGCTPLHYAASKNRHEI 122
Query: 401 AELLLKNNAQVDTP-----TKMDIATT---------LLEYGAKPNAESVAGFTPLHLSAS 446
A +LL+ A D T M A LL Y A N + G TPLHL+
Sbjct: 123 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 182
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
E + + +L+ GA + KE T L +A+
Sbjct: 183 EERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 28/197 (14%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKDGFTPLAVAMQQGHDKVVAVLLENDT 149
D T L A GH ++V LL+ ND + G++PL +A G D++V LL
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALL---- 94
Query: 150 RGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT 209
GK + CT P +S + L++ NPD
Sbjct: 95 -GK--------------GAQVNAVNQNGCT--PLHYAASKNRH-EIAVMLLEGGANPDAK 136
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
T +H A+ GN + +ILL +A N G TPLH+A + L+
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 196
Query: 270 ANPDIPTVRGETPLHLA 286
A+ I +TPL +A
Sbjct: 197 ASIYIENKEEKTPLQVA 213
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
+ T+ A AGH + + L+ V + + G +V LL +GA
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
Query: 63 VDSATKKGNTALHIASLG---EFLVPVWLG----DFKQGDGFTPLAVAMQQGHDKVVAVL 115
V++ + G T LH A+ E V + G D K T + A +G+ K++ +L
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 116 L----ENDTRGKDGFTPLAVAMQQ 135
L + + +G TPL +A +
Sbjct: 160 LYYKASTNIQDTEGNTPLHLACDE 183
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + GLTPL++A+ G + IV LL+N A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
TPLHLAA +I +LL++GA V+A+ + G TA I+
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 19/97 (19%)
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
K + GLTPL+L + + E+LLKN GA NA GFTP
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKN-------------------GADVNAVDAIGFTP 83
Query: 441 LHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
LHL+A GH +++ +LL+HGADV+ K G TA I+
Sbjct: 84 LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + + G TPL++A+ +G+ + +LL ADVN G TPLH+A+F+G
Sbjct: 33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ I LL++ A+ + G+T ++ D+ IL
Sbjct: 93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 59/171 (34%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A+ G T L +A G++ + E L K G +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV--------LLKNGAD 72
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
+ +I G TPLHL A + +AE+LL
Sbjct: 73 VNAVDAI--------------------------------GFTPLHLAAFIGHLEIAEVLL 100
Query: 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
K +GA NA+ G T +S G+ D++ +L
Sbjct: 101 K-------------------HGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 262 VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
V L+ N A+ + G TPL+LA +I+ +LL+NGA V+A G T L +A
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 322 LGYISVEESLGAAERSQLKKRGREGHTALSIA 353
+G++ + E L + + + + G TA I+
Sbjct: 90 IGHLEIAEVL-LKHGADVNAQDKFGKTAFDIS 120
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
G TPL +A GH ++V VLL+N D D GFTPL +A GH ++ VLL+
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + GHL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 68 KKGNTALHIASL 79
G T LH+A+
Sbjct: 78 AIGFTPLHLAAF 89
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANV 63
G T A GHL+ + LKN D+ + GHL + LL GA+V
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 64 DSATKKGNTALHIA 77
++ K G TA I+
Sbjct: 107 NAQDKFGKTAFDIS 120
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
+VTS+ G +PLH+A+ +G + +LL A+ PLH+A G +V LL
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL--SIAQKLGY 324
++A P+ + G TPL A +++ +LL++GA ++A +G+TAL ++ +K +
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199
Query: 325 ISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI--------SVEESLKGVTET 371
+ L A L KR R TA+ A++ I S SL V ET
Sbjct: 200 VVELLLLHGASVQVLNKRQR---TAVDCAEQNSKIMELLQVVPSCVASLDDVAET 251
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 14/106 (13%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKN-------NAQVDTPTKM-------DIATTLLEYGA 428
++G +PLH+ A R + LLLK+ NA P + + LL+ A
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
KPN + ++G TPL + S GH ++ A+LL+HGA ++ + +G+TAL
Sbjct: 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
G A L+K+ N + PLH+A G+ V LLD A N SG TPL
Sbjct: 97 GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPL 156
Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR 310
A G +V LLQ+ A+ + +G T LH A ++ +LL +GA V +
Sbjct: 157 IYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216
Query: 311 EGHTALSIAQK 321
TA+ A++
Sbjct: 217 RQRTAVDCAEQ 227
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 60 GANVDSATKKGNTALHIASL--GEFLVPVWL-----GDFKQGDGFTPLAVAMQQGHDKVV 112
G V+ ++ G++ LH+A+L L+P+ L + D PL +A QQGH +VV
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 113 AVLLENDTR--GKD--GFTPLAVAMQQGHDKVVAVLLEN 147
LL+++ + KD G TPL A GH ++VA+LL++
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 28/142 (19%)
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA-----------------T 421
G ++ + PLHL Q+ V + LL +NA+ P K D++
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAK---PNKKDLSGNTPLIYACSGGHHELVA 169
Query: 422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLG 481
LL++GA NA + G T LH + E H + +LL HGA V K TA+ A++
Sbjct: 170 LLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS 229
Query: 482 YI--------SVEESLKGVTET 495
I S SL V ET
Sbjct: 230 KIMELLQVVPSCVASLDDVAET 251
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
VN +++ G +PLHVA+ G +++ LL++ AN PLHLA + +++ L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 299 LRNGAQVDARAREGHTALSIAQKLGY 324
L + A+ + + G+T L A G+
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGH 164
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLENDT----RGKDGFTPLAVAMQQGHDKVVAVLLENDTR 150
DG +PL VA G ++ +LL++ R D PL +A QQGH +VV LL+++ +
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
N S G +PLH++A G AD+ +LL+HGA+ + L +A + G+ V + L
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 48 GHLHVVTELLSRGANVDSATKKGNTALHIASLGE--FLVPVWL 88
GH +V LL GA+++++ KGNTALH A + + F+V + L
Sbjct: 163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI 263
+ PD + GFTPL AS +G LL+ AD + AK + L +AS G +IV
Sbjct: 30 NKPD---ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
LL+ D + +I G TPL A N + LL GA + A G+T + +A LG
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Query: 324 YISVEE 329
Y V++
Sbjct: 147 YRKVQQ 152
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
VN + G TPL AS G + V +LL+ A+P I E+ L LA+ TDI+ +L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358
L ++ G T L A ++ E+L A + L G+T + +A LGY
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL-LARGADLTTEADSGYTPMDLAVALGY 147
Query: 359 ISVEESLK 366
V++ ++
Sbjct: 148 RKVQQVIE 155
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
DI LLE N G TPL + H LL GAD++ A G+T + +A
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142
Query: 478 QKLGYISVEESLK 490
LGY V++ ++
Sbjct: 143 VALGYRKVQQVIE 155
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 29/158 (18%)
Query: 125 GFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPAS 184
GFTPL A G + V LLE + ++ + A
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHI----------------------LAKERESAL 73
Query: 185 VLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
L+ST G G L++ + + ++ +G TPL A H + LL + AD+ A
Sbjct: 74 SLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD 133
Query: 245 SGLTPLHVASFMGCMNI-------VIYLLQNDANPDIP 275
SG TP+ +A +G + ++ L Q++ P P
Sbjct: 134 SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+G++PLHIA+ G + + LL K A VN ++G TPLH A+ I + LL+ AN
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
PD T +H AA ++ ILL A + + EG+T L +A
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 77/208 (37%), Gaps = 40/208 (19%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
T + T LH A G+ + LL VN +G +PLH+A+ G IV LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
A+ + G TPLH AA N+ +I +LL GA DA+ TA+ A G
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG----- 150
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTP 388
+LK V L + G TP
Sbjct: 151 -----------------------------------NLKMVHILLFYKASTNIQDTEGNTP 175
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTK 416
LHL E+RV A+ L+ A + K
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENK 203
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 54/212 (25%)
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
T LH A A T+I+ LL+ G V+ + G + L IA G + ++L
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL--------- 92
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
+KG + ++NG TPLH A ++R +
Sbjct: 93 -----------------------LVKGAHVNAV--------NQNGCTPLHYAASKNRHEI 121
Query: 401 AELLLKNNAQVDTPTKMD--------------IATTLLEYGAKPNAESVAGFTPLHLSAS 446
A +LL+ A D D + LL Y A N + G TPLHL+
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
E + + L+ GA + KE T L +A+
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 28/197 (14%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKDGFTPLAVAMQQGHDKVVAVLLENDT 149
D T L A GH ++V LL+ ND + G++PL +A G D++V LL
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALL---- 93
Query: 150 RGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT 209
+ H+ + CT P +S + L++ NPD
Sbjct: 94 -----VKGAHV----------NAVNQNGCT--PLHYAASKNRH-EIAVMLLEGGANPDAK 135
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
T +H A+ GN + +ILL +A N G TPLH+A + +L+
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 270 ANPDIPTVRGETPLHLA 286
A+ I +TPL +A
Sbjct: 196 ASIYIENKEEKTPLQVA 212
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 20/158 (12%)
Query: 334 AERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCA 393
A++S + ++ TAL A G+ + E L L + +K G +PLH+ A
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFL------LQLGVPVNDKDDAGWSPLHIAA 81
Query: 394 QEDRVGVAELLLKNNAQVD-------TP-------TKMDIATTLLEYGAKPNAESVAGFT 439
R + + LL A V+ TP + +IA LLE GA P+A+ T
Sbjct: 82 SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141
Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+H +A++G+ M +LL + A + EG+T L +A
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGAN 62
+ T+ A AGH + + L+ V + + G +V LL +GA+
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Query: 63 VDSATKKGNTALHIASLG---EFLVPVWLG----DFKQGDGFTPLAVAMQQGHDKVVAVL 115
V++ + G T LH A+ E V + G D K T + A +G+ K+V +L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 116 L----ENDTRGKDGFTPLAVAMQQ 135
L + + +G TPL +A +
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDE 182
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN + + G TPLH+A+ + IV LL++ A+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
TPLHLAA +I+ +LL++GA V+A+ + G TA I+ G + E L
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 19/108 (17%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
+ G TPLHL A D + + E+LLK +GA NA G TPLH
Sbjct: 45 RKGNTPLHLAADYDHLEIVEVLLK-------------------HGADVNAHDNDGSTPLH 85
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
L+A GH ++ +LL+HGADV+ K G TA I+ G + E L+
Sbjct: 86 LAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + + + G TPLH+A+ Y + + +LL ADVN G TPLH+A+ G
Sbjct: 33 LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
+ IV LL++ A+ + G+T ++ D+ IL +
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA G TPLHL+A H ++ +LL+HGADV+ +G T L +A
Sbjct: 28 DEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLA 87
Query: 478 QKLGYISVEESL 489
G++ + E L
Sbjct: 88 ALFGHLEIVEVL 99
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 56 LLSRGANVDSATKKGNTALHIASLGEFL--VPVWLG-----DFKQGDGFTPLAVAMQQGH 108
L++ GA+V++ +KGNT LH+A+ + L V V L + DG TPL +A GH
Sbjct: 33 LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 109 DKVVAVLLEN--DTRGKDGF--TPLAVAMQQGHDKVVAVL 144
++V VLL++ D +D F T +++ G++ + +L
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ + HL +V LL GA+V++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 68 KKGNTALHIASLGEFL--VPVWL---GDFKQGDGF--TPLAVAMQQGHDKVVAVL 115
G+T LH+A+L L V V L D D F T +++ G++ + +L
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+G++PLHIA+ G + + LL K A VN ++G TPLH A+ I + LL+ AN
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
PD T +H AA ++ ILL A + + EG+T L +A
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 77/208 (37%), Gaps = 40/208 (19%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
T + T LH A G+ + LL VN +G +PLH+A+ G IV LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
A+ + G TPLH AA N+ +I +LL GA DA+ TA+ A G
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG----- 150
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTP 388
+LK V L + G TP
Sbjct: 151 -----------------------------------NLKMVHILLFYKASTNIQDTEGNTP 175
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTK 416
LHL E+RV A+ L+ A + K
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENK 203
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 54/212 (25%)
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
T LH A A T+I+ LL+ G V+ + G + L IA G + ++L
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL--------- 92
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400
+KG + ++NG TPLH A ++R +
Sbjct: 93 -----------------------LVKGAHVNAV--------NQNGCTPLHYAASKNRHEI 121
Query: 401 AELLLKNNAQVDTPTKMD--------------IATTLLEYGAKPNAESVAGFTPLHLSAS 446
A +LL+ A D D + LL Y A N + G TPLHL+
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
E + + L+ GA + KE T L +A+
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 28/197 (14%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKDGFTPLAVAMQQGHDKVVAVLLENDT 149
D T L A GH ++V LL+ ND + G++PL +A G D++V LL
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALL---- 93
Query: 150 RGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT 209
+ H+ + CT P +S + L++ NPD
Sbjct: 94 -----VKGAHV----------NAVNQNGCT--PLHYAASKNRH-EIAVMLLEGGANPDAK 135
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
T +H A+ GN + +ILL +A N G TPLH+A + +L+
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 270 ANPDIPTVRGETPLHLA 286
A+ I +TPL +A
Sbjct: 196 ASIYIENKEEKTPLQVA 212
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPLH A+ Y V LL ADV+ K GL PLH A G + L+++ A ++
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
+ TPLH AA + +I ++LL++GA + R+G+T L + +
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 15/119 (12%)
Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAKPNA 432
TPLH A +RV V E LL++ A V K ++A L+++GA N
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 433 ESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG 491
+ FTPLH +A++G ++ +LL+HGAD + ++G+T L + K G +++ L+G
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRG 163
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
YL+++ + K G PLH A YG+ VA +L+ A VN + TPLH A+ G
Sbjct: 62 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
I LLQ+ A+P G TPL L + TD I+ LLR A
Sbjct: 122 KYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTD-IQDLLRGDA 165
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
R TPLH AA N+ ++ LL++GA V A+ + G L A G+ V E L
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 96
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 52 VVTELLSRGANVDSATKKGNTALHIAS------LGEFLVP----VWLGDFKQGDGFTPLA 101
VV LL GA+V + K G LH A + E LV V + D + FTPL
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK---FTPLH 115
Query: 102 VAMQQGHDKVVAVLLENDT----RGKDGFTPL 129
A +G ++ +LL++ + +DG TPL
Sbjct: 116 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 187 SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSG 246
+ + G+ L+K+ +V FTPLH A+ G + +LL AD + G
Sbjct: 84 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 143
Query: 247 LTPL 250
TPL
Sbjct: 144 NTPL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPLH A+ Y V LL ADV+ K GL PLH A G + L+++ A ++
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
+ TPLH AA + +I ++LL++GA + R+G+T L + +
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAKPNA 432
TPLH A +RV V E LL++ A V K ++A L+++GA N
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 433 ESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV 492
+ FTPLH +A++G ++ +LL+HGAD + ++G+T L + K G +++ L+G
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGD 166
Query: 493 TETLIIAK 500
L AK
Sbjct: 167 AALLDAAK 174
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
YL+++ + K G PLH A YG+ VA +L+ A VN + TPLH A+ G
Sbjct: 64 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
I LLQ+ A+P G TPL L + TDI +L + A +DA
Sbjct: 124 KYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAALLDA 172
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
R TPLH AA N+ ++ LL++GA V A+ + G L A G+ V E L
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 98
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 52 VVTELLSRGANVDSATKKGNTALHIAS------LGEFLVP----VWLGDFKQGDGFTPLA 101
VV LL GA+V + K G LH A + E LV V + D + FTPL
Sbjct: 61 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK---FTPLH 117
Query: 102 VAMQQGHDKVVAVLLENDT----RGKDGFTPL 129
A +G ++ +LL++ + +DG TPL
Sbjct: 118 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 187 SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSG 246
+ + G+ L+K+ +V FTPLH A+ G + +LL AD + G
Sbjct: 86 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 145
Query: 247 LTPL 250
TPL
Sbjct: 146 NTPL 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPLH A+ Y V LL ADV+ K GL PLH A G + L+++ A ++
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
+ TPLH AA + +I ++LL++GA + R+G+T L + +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 15/119 (12%)
Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAKPNA 432
TPLH A +RV V E LL++ A V K ++A L+++GA N
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 433 ESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG 491
+ FTPLH +A++G ++ +LL+HGAD + ++G+T L + K G +++ L+G
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRG 161
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
YL+++ + K G PLH A YG+ VA +L+ A VN + TPLH A+ G
Sbjct: 60 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
I LLQ+ A+P G TPL L + TD I+ LLR A
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTD-IQDLLRGDA 163
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
R TPLH AA N+ ++ LL++GA V A+ + G L A G+ V E L
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 52 VVTELLSRGANVDSATKKGNTALHIAS------LGEFLVP----VWLGDFKQGDGFTPLA 101
VV LL GA+V + K G LH A + E LV V + D + FTPL
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK---FTPLH 113
Query: 102 VAMQQGHDKVVAVLLENDT----RGKDGFTPL 129
A +G ++ +LL++ + +DG TPL
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 187 SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSG 246
+ + G+ L+K+ +V FTPLH A+ G + +LL AD + G
Sbjct: 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 141
Query: 247 LTPL 250
TPL
Sbjct: 142 NTPL 145
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL--TPLHVASFMGCMNIVI 263
P T G +PLH+A+ YG+ +LL RA V+ A++ + TPLH+A+ G NIV
Sbjct: 27 PFTTDWLGTSPLHLAAQYGHFSTTEVLL--RAGVSRDARTKVDRTPLHMAASEGHANIVE 84
Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
LL++ A+ + + T LH A N +++ +L++ GA V +++ TA I+
Sbjct: 85 VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMD--------------IATTLLEYGAKP 430
G +PLHL AQ E+LL+ D TK+D I LL++GA
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
NA+ + T LH + H ++ +L+++GADV +K TA I+ G + E L+
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLE----NDTRGKDGFTPLAVAMQQGHDKVVAVLLEN---- 147
G +PL +A Q GH VLL D R K TPL +A +GH +V VLL++
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 148 DTRGKVRLPALH 159
+ + +++ ALH
Sbjct: 94 NAKDMLKMTALH 105
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
L++ G+ +T L++ + D +K TPLH+A+ G+ + +LL ADVN
Sbjct: 40 LAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML 99
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+T LH A+ +V L++ A+ + +T ++ D+ IL
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA P G +PLHL+A GH + +LL G K T L +A
Sbjct: 16 DEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMA 74
Query: 478 QKLGYISVEESL 489
G+ ++ E L
Sbjct: 75 ASEGHANIVEVL 86
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 20/182 (10%)
Query: 191 GNA-ATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTP 249
GNA A +L E++ + GF+PLH A G V +L+ + A +N + TP
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 250 LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
LH+A+ G +IV LLQ A+ + G PLH A Q + L+ NGA V
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV---- 131
Query: 310 REGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL-KGV 368
SI K G + V+++ A R L++R A + Q L I +++ KG
Sbjct: 132 -------SICNKYGEMPVDKA-KAPLRELLRER------AEKMGQNLNRIPYKDTFWKGT 177
Query: 369 TE 370
T
Sbjct: 178 TR 179
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF 438
G+ H G +PLH +E R V E+L+ A+++ + D
Sbjct: 35 GDDH--GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD------------------- 73
Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL--KGVTETL 496
TPLHL+AS GH D+ LL++ AD++ + G+ L A G V E L G ++
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 497 IIAKGDGEKHKVVAP--EIMQE 516
G+ K AP E+++E
Sbjct: 134 CNKYGEMPVDKAKAPLRELLRE 155
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 84 VPVWL----GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEND------TRGKDGFTPLAV 131
V +WL D QGD GF+PL A ++G VV +L+ RG D TPL +
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHL 78
Query: 132 AMQQGHDKVVAVLLE 146
A GH +V LL+
Sbjct: 79 AASHGHRDIVQKLLQ 93
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVN---FSAKSGLTPLHVASFMGCMNIVIYLLQ 267
+ G PLH + + + + LL K +VN + SG TP H+A +G + +V L
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 268 NDANPDIPTV--RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
PD+ + +G T LHLA ++ + L+ NGA V + + L A +G +
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 326 SVEESLGAAERSQLKKRGREGHTAL 350
+ E L +S + + ++G T L
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDK--RADVNFSAKSGLTPLHVASFMGCMNIVIY 264
D SG+TP HIA GN V L D+ + D+N G+T LH+A + +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNG-AQVDARAREGHTAL 316
L++N A+ I + PLH AA +I +L G + V+ + ++G T L
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 84/218 (38%), Gaps = 36/218 (16%)
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV---DARAREGHTALSIAQK 321
LLQ D + G PLH + +I LL V D G T IA
Sbjct: 29 LLQKDQD-------GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81
Query: 322 LGYISVEESL-GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE 380
+G + V +SL + L K +G T L +A + V + L ++ I
Sbjct: 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------ 135
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
K K PLH A + + ELL + + + + K G+TP
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELL------------CGLGKSAVNWQDK------QGWTP 177
Query: 441 LHLSASEGHADMSAMLLE-HGADVSHAAKEGHTALSIA 477
L + +EGH D + +L+E +GA+ +G A +A
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 358 YISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKN--NAQVD--- 412
+ V+E L L+ +K ++G PLH + LL N +D
Sbjct: 15 FFKVQELLHSKPSLLL------QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 413 -----TPT-------KMDIATTLLEYGAKPNAESVA--GFTPLHLSASEGHADMSAMLLE 458
TP +++ +L + KP+ + G T LHL+ + ++S L+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 459 HGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
+GA V K L A +G + + E L G+ ++ +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 48 GHLHVVTELLSR--GANVDSATKKGNTALHIA------SLGEFLV----PVWLGD-FKQG 94
G+L VV L R +++ T +G T LH+A + +FL+ V + D F Q
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ- 141
Query: 95 DGFTPLAVAMQQGHDKVVAVLL-----ENDTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
PL A G K++ +L + + K G+TPL A+ +GH +L+E
Sbjct: 142 ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVN---FSAKSGLTPLHVASFMGCMNIVIYLLQ 267
+ G PLH + + + + LL K +VN + SG TP H+A +G + +V L
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 268 NDANPDIPTV--RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
PD+ + +G T LHLA ++ + L+ NGA V + + L A +G +
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 326 SVEESLGAAERSQLKKRGREGHTAL 350
+ E L +S + + ++G T L
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDK--RADVNFSAKSGLTPLHVASFMGCMNIVIY 264
D SG+TP HIA GN V L D+ + D+N G+T LH+A + +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNG-AQVDARAREGHTAL 316
L++N A+ I + PLH AA +I +L G + V+ + ++G T L
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 82/218 (37%), Gaps = 36/218 (16%)
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV---DARAREGHTALSIAQK 321
LLQ D + G PLH + +I LL V D G T IA
Sbjct: 29 LLQKDQD-------GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81
Query: 322 LGYISVEESL-GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE 380
+G + V +SL + L K +G T L +A + V + L ++ I
Sbjct: 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------ 135
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
K K PLH A + + ELL + N + G+TP
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGK------------------SAVNWQDKQGWTP 177
Query: 441 LHLSASEGHADMSAMLLE-HGADVSHAAKEGHTALSIA 477
L + +EGH D + +L+E +GA+ +G A +A
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 358 YISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKN--NAQVD--- 412
+ V+E L L+ +K ++G PLH + LL N +D
Sbjct: 15 FFKVQELLHSKPSLLL------QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 413 -----TPT-------KMDIATTLLEYGAKPNAESVA--GFTPLHLSASEGHADMSAMLLE 458
TP +++ +L + KP+ + G T LHL+ + ++S L+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 459 HGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
+GA V K L A +G + + E L G+ ++ +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 48 GHLHVVTELLSR--GANVDSATKKGNTALHIA------SLGEFLV----PVWLGD-FKQG 94
G+L VV L R +++ T +G T LH+A + +FL+ V + D F Q
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ- 141
Query: 95 DGFTPLAVAMQQGHDKVVAVLL-----ENDTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
PL A G K++ +L + + K G+TPL A+ +GH +L+E
Sbjct: 142 ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVN---FSAKSGLTPLHVASFMGCMNIVIYLLQ 267
+ G PLH + + + + LL K +VN + SG TP H+A +G + +V L
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 268 NDANPDIPTV--RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
PD+ + +G T LHLA ++ + L+ NGA V + + L A +G +
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 326 SVEESLGAAERSQLKKRGREGHTAL 350
+ E L +S + + ++G T L
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDK--RADVNFSAKSGLTPLHVASFMGCMNIVIY 264
D SG+TP HIA GN V L D+ + D+N G+T LH+A + +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNG-AQVDARAREGHTAL 316
L++N A+ I + PLH AA +I +L G + V+ + ++G T L
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 84/218 (38%), Gaps = 36/218 (16%)
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV---DARAREGHTALSIAQK 321
LLQ D + G PLH + +I LL V D G T IA
Sbjct: 29 LLQKDQD-------GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81
Query: 322 LGYISVEESL-GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE 380
+G + V +SL + L K +G T L +A + V + L ++ I
Sbjct: 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------ 135
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
K K PLH A + + ELL + + + + K G+TP
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELL------------CGLGKSAVNWQDK------QGWTP 177
Query: 441 LHLSASEGHADMSAMLLE-HGADVSHAAKEGHTALSIA 477
L + +EGH D + +L+E +GA+ +G A +A
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 358 YISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKN--NAQVD--- 412
+ V+E L L+ +K ++G PLH + LL N +D
Sbjct: 15 FFKVQELLHSKPSLLL------QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 413 -----TPT-------KMDIATTLLEYGAKPNAESVA--GFTPLHLSASEGHADMSAMLLE 458
TP +++ +L + KP+ + G T LHL+ + ++S L+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 459 HGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
+GA V K L A +G + + E L G+ ++ +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 48 GHLHVVTELLSR--GANVDSATKKGNTALHIA------SLGEFLV----PVWLGD-FKQG 94
G+L VV L R +++ T +G T LH+A + +FL+ V + D F Q
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ- 141
Query: 95 DGFTPLAVAMQQGHDKVVAVLL-----ENDTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
PL A G K++ +L + + K G+TPL A+ +GH +L+E
Sbjct: 142 ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 115/269 (42%), Gaps = 24/269 (8%)
Query: 232 LLDKRADVNFSAKSG-LTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
LL+ A+VNF + G TPLH A M +IV LL++ A+P + G TP LAA A
Sbjct: 24 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83
Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL-GAAERSQLKKRGREGHTA 349
++++ L GA V+ G TA A G + + L L+++ +E
Sbjct: 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 143
Query: 350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLK-NN 408
L + E KG E L I + N C R + LL ++
Sbjct: 144 LRKGGATALMDAAE--KGHVEVLKILLDEMGADVNA------CDNMGRNALIHALLSSDD 195
Query: 409 AQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG-ADVSHAA 467
+ V+ T + LL++GA N G TPL L+ + H + LLE +++
Sbjct: 196 SDVEAITHL-----LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETL 496
+G TAL +A VE LK + E L
Sbjct: 251 SDGKTALLLA-------VELKLKKIAELL 272
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 35/237 (14%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+++ +P + K+G TP +A+ G+ + + L K ADVN G T A+ G
Sbjct: 58 LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
Query: 259 MNIVIYLLQNDAN--------PDIPTVR--GETPLHLAARANQTDIIRILLRN-GAQVDA 307
+ + +L + AN D +R G T L AA ++++ILL GA V+A
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177
Query: 308 RAREGHTALSIAQKLGYISVEES-------LGAAERSQLKKRGREGHTALSIAQKLGYIS 360
G AL A +S ++S L + + RG G T L +A
Sbjct: 178 CDNMGRNALIHA----LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA------- 226
Query: 361 VEESLKGVTETLI----IAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDT 413
VE+ G+ + L+ I D + +G T L L + +AELL K A D
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTD--SDGKTALLLAVELKLKKIAELLCKRGASTDC 281
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 417 MDIATTLLEYGAKPN-AESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALS 475
+D+ LLE GA N E G+TPLH + D+ +LL HGAD K G T
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL 77
Query: 476 IAQKLGYISV 485
+A G + +
Sbjct: 78 LAAIAGSVKL 87
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 83/202 (41%), Gaps = 33/202 (16%)
Query: 284 HLAARANQ---TDIIRILLRNGAQVDARAREG-----HTALSIAQKLGYISVEESLGAAE 335
HL +A Q D+++ LL GA V+ + EG H A+ ++++ VE L
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE---DIVELLLRHGA 63
Query: 336 RSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD--GEKHKNGLTPLHLCA 393
L+K+ G T +A G + + LK L ++KG E G T A
Sbjct: 64 DPVLRKKN--GATPFLLAAIAGSVKL---LK-----LFLSKGADVNECDFYGFTAFMEAA 113
Query: 394 QEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
+V + L K A V+ K L G G T L +A +GH ++
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG---------GATALMDAAEKGHVEVL 164
Query: 454 AMLL-EHGADVSHAAKEGHTAL 474
+LL E GADV+ G AL
Sbjct: 165 KILLDEMGADVNACDNMGRNAL 186
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 191 GNA-ATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTP 249
GNA A +L E++ + GF+PLH A G V +L+ + A +N + TP
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 250 LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
LH+A+ G +IV LLQ A+ + G PLH A Q + L+ NGA V
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV---- 126
Query: 310 REGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
SI K G + V+++ A R L++R +
Sbjct: 127 -------SICNKYGEMPVDKA-KAPLRELLRERAEK 154
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF 438
G+ H G +PLH +E R V E+L+ A+++ + D
Sbjct: 30 GDDH--GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD------------------- 68
Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL--KGVTETL 496
TPLHL+AS GH D+ LL++ AD++ + G+ L A G V E L G ++
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 497 IIAKGDGEKHKVVAP--EIMQE 516
G+ K AP E+++E
Sbjct: 129 CNKYGEMPVDKAKAPLRELLRE 150
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 84 VPVWL----GDFKQGD--GFTPLAVAMQQGHDKVVAVLLEND------TRGKDGFTPLAV 131
V +WL D QGD GF+PL A ++G VV +L+ RG D TPL +
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHL 73
Query: 132 AMQQGHDKVVAVLLE 146
A GH +V LL+
Sbjct: 74 AASHGHRDIVQKLLQ 88
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
I+ E+ + T + GFTPL A+ +G V LL AD K + L +A G
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
+IV LL + + G TPL A N +++LL +GA G+ ++ +A
Sbjct: 83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Query: 320 QKLGYISVEE 329
LGY SV++
Sbjct: 143 VALGYRSVQQ 152
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGA 428
+ G TPL A ++ V E LL+N A K DI LL+ G
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488
N G TPL + H MLLE GAD + G+ ++ +A LGY SV++
Sbjct: 94 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153
Query: 489 LK 490
++
Sbjct: 154 IE 155
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
G A +L++N +P + K + L +A G + +LLD DVN +G TPL
Sbjct: 47 GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106
Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
A + V LL++ A+P I T G + LA
Sbjct: 107 LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGA--QVDARAREGHTALSIAQKLGYISVEESL 331
G TPL AA Q ++ LL+NGA Q+ + RE +ALS+A GY + + L
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKML 88
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
+GFTPL A G VV LL+N GK + L++A +G+ +V +LL+
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 90
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
I+ E+ + T + GFTPL A+ +G V LL AD K + L +A G
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
+IV LL + + G TPL A N +++LL +GA G+ ++ +A
Sbjct: 81 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Query: 320 QKLGYISVEE 329
LGY SV++
Sbjct: 141 VALGYRSVQQ 150
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGA 428
+ G TPL A ++ V E LL+N A K DI LL+ G
Sbjct: 32 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 91
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488
N G TPL + H MLLE GAD + G+ ++ +A LGY SV++
Sbjct: 92 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 151
Query: 489 LK 490
++
Sbjct: 152 IE 153
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
G A +L++N +P + K + L +A G + +LLD DVN +G TPL
Sbjct: 45 GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 104
Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
A + V LL++ A+P I T G + LA
Sbjct: 105 LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 64/182 (35%), Gaps = 59/182 (32%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
G TPL AA Q ++ LL+NGA
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGAD--------------------------------P 60
Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR 397
QL +GRE +ALS+A GY + + L L E NG TPL +
Sbjct: 61 QLLGKGRE--SALSLACSKGYTDIVKML------LDCGVDVNEYDWNGGTPLLYAVHGNH 112
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
V ++ LLE GA P E+ +G+ + L+ + G+ + ++
Sbjct: 113 VKCVKM-------------------LLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Query: 458 EH 459
H
Sbjct: 154 SH 155
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
+GFTPL A G VV LL+N GK + L++A +G+ +V +LL+
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 88
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
I+ E+ + T + GFTPL A+ +G V LL AD K + L +A G
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
+IV LL + + G TPL A N +++LL +GA G+ ++ +A
Sbjct: 99 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Query: 320 QKLGYISVEE 329
LGY SV++
Sbjct: 159 VALGYRSVQQ 168
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGA 428
+ G TPL A ++ V E LL+N A K DI LL+ G
Sbjct: 50 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 109
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488
N G TPL + H MLLE GAD + G+ ++ +A LGY SV++
Sbjct: 110 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 169
Query: 489 LK 490
++
Sbjct: 170 IE 171
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
G A +L++N +P + K + L +A G + +LLD DVN +G TPL
Sbjct: 63 GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 122
Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
A + V LL++ A+P I T G + LA
Sbjct: 123 LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGA--QVDARAREGHTALSIAQKLGYISVEESL 331
G TPL AA Q ++ LL+NGA Q+ + RE +ALS+A GY + + L
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKML 104
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
+GFTPL A G VV LL+N GK + L++A +G+ +V +LL+
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 106
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
G T L A G+A LL K ++VN SG TPL + G + +LL++ AN
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
+ + GETPL +A++ +++I++ LL GA + AR G TA + A+ G
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFG 178
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
++ IA LL G+ N + +G TPL S G+++MS LLEHGA+V+ EG T L
Sbjct: 79 NRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138
Query: 475 SIAQKLG 481
+A K G
Sbjct: 139 IVASKYG 145
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDT-------PTKMDI-------ATTLLE 425
+K G T L + +R+G+AE LL + V+T P I + LLE
Sbjct: 63 DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
+GA N ++ G TPL +++ G +++ LLE GAD+S G TA + A+ G
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR--- 179
Query: 486 EESLKGVTET 495
+E +K TE
Sbjct: 180 QEVIKIFTEV 189
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
N+ TPL VA +G N + L++N + + G T L A + N+ I LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 300 RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLG 357
G+ V+ + G T L + GY + L + + R EG T L +A K G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL-LEHGANVNDRNLEGETPLIVASKYG 145
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPL +A G E + L++ + G T L A + I LL +N +
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
G+TPL + +++ LL +GA V+ R EG T L +A K G
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 30/105 (28%)
Query: 46 KDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQ 105
K+ L + +LLS+G+NV++ K G TPL ++
Sbjct: 77 KNNRLGIAEKLLSKGSNVNT--------------------------KDFSGKTPLMWSII 110
Query: 106 QGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
G+ ++ LLE+ + R +G TPL VA + G ++V LLE
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+ N + SG TPL + +G ++ LL+ A+VN G TPL VAS G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
IV LL+ A+ + G T A + ++I+I
Sbjct: 147 SEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 44/189 (23%)
Query: 87 WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKD----GFTPLAVAMQQGHDKVVA 142
+L +++ TPL VA G + + L+EN + +D G T L A++ +
Sbjct: 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAE 85
Query: 143 VLLEN-------DTRGKVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAAT 195
LL D GK L + S G +
Sbjct: 86 KLLSKGSNVNTKDFSGKTPL-----------------------------MWSIIFGYSEM 116
Query: 196 GGYLIKNEHNPDVTSKS--GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
+L+ EH +V ++ G TPL +AS YG + LL+ AD++ +GLT A
Sbjct: 117 SYFLL--EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174
Query: 254 SFMGCMNIV 262
G ++
Sbjct: 175 RIFGRQEVI 183
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 116 LENDTRGKDGFTPLAVAMQQG----------HDKVVAVL---------LENDTRGKVRLP 156
++ + RG DGFTPL +A G + AV+ L N T +
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGAT 59
Query: 157 ALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGG-------YLIKNEH-NPDV 208
ALH+ E S + + T +AA LI+N + D
Sbjct: 60 ALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
G TPL +A+ EG+ L++ ADVN G + LH A+ + ++ + LL+N
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
AN D+ R ETPL LAAR + ++LL + A D IAQ+
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 98/243 (40%), Gaps = 47/243 (19%)
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV-----------------RGE 280
DVN G TPL +AS C + ++ D P V G
Sbjct: 2 DVNVRGPDGFTPLMIAS---CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGA 58
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
T LHLAA +++D + LL A + + G T L A V + L + L
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVG 399
R +G T L +A +L +++G+ E LI + D + G + LH A + V
Sbjct: 119 ARMHDGTTPLILAARL-------AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
A +LLKN A D + N E TPL L+A EG + + +LL+H
Sbjct: 172 AAVVLLKNGANKDM---------------QNNREE----TPLFLAAREGSYETAKVLLDH 212
Query: 460 GAD 462
A+
Sbjct: 213 FAN 215
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
N G T LHL+A+ +D + LLE AD + G T L + +V +
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPL-------HAAVSADAQ 103
Query: 491 GVTETLIIAKG---DGEKHKVVAPEIM 514
GV + LI + D H P I+
Sbjct: 104 GVFQILIRNRATDLDARMHDGTTPLIL 130
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 53/100 (53%)
Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ 267
T+ G T LHIAS G+ LL +D N +G TPLH A G + +V LLQ
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 268 NDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
+ A + + ++PLH AA+ DI+++LL GA +A
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
++S G+ + YL++N +P+V +G+TPLH A ++G+ V +LL +A VN +
Sbjct: 16 IASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ 75
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL 283
+PLH A+ G ++IV LL A+ + + G P+
Sbjct: 76 NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 241 FSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
F+ G T LH+AS G + V YLLQN ++P++ G TPLH A ++ +LL+
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 301 NGAQVDARAREGHTALSIAQKLGYISV 327
+ A V+ + + L A K G++ +
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDI 91
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 416 KMDIATT--LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTA 473
K DI + LL+ G+ PN + AG+TPLH + + GH + +LL+H A V+ + +
Sbjct: 20 KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79
Query: 474 LSIAQKLGYISV 485
L A K G++ +
Sbjct: 80 LHDAAKNGHVDI 91
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 69 KGNTALHIASL-GEFLVPVWL------GDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
+G T LHIAS+ G+ +L + K G+TPL A GH KVV +LL++
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLL 145
+T G +PL A + GH +V +LL
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 345 EGHTALSIAQKLGYI-SVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL 403
G T L IA G I SVE L+ ++ + K G TPLH + V EL
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNV-------KDHAGWTPLHEACNHGHLKVVEL 61
Query: 404 LLKNNA-------QVDTPTK-------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
LL++ A Q D+P +DI LL YGA NA ++ G P+ + E
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES- 120
Query: 450 ADMSAMLL 457
M ++LL
Sbjct: 121 --MKSLLL 126
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 91 FKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKD--GFTPLAVAMQQGHDKVVAVLLE 146
F G T L +A +G V LL+N D KD G+TPL A GH KVV +LL+
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 116 LENDTRGKDGFTPLAVAMQQG----------HDKVVAVL---------LENDTRGKVRLP 156
++ + RG DGFTPL +A G + AV+ L N T +
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGET 59
Query: 157 ALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGG-------YLIKNEH-NPDV 208
ALH+ E S + + T +AA LI+N + D
Sbjct: 60 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
G TPL +A+ EG+ L++ ADVN G + LH A+ + ++ + LL+N
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
AN D+ R ETPL LAAR + ++LL + A D IAQ+
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 100/243 (41%), Gaps = 47/243 (19%)
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV-----------------RGE 280
DVN G TPL +AS C + ++ D P V GE
Sbjct: 2 DVNVRGPDGFTPLMIAS---CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE 58
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
T LHLAAR +++D + LL A + + G T L A V + L + L
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVG 399
R +G T L +A +L +++G+ E LI + D + G + LH A + V
Sbjct: 119 ARMHDGTTPLILAARL-------AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
A +LLKN A D + N E TPL L+A EG + + +LL+H
Sbjct: 172 AAVVLLKNGANKDM---------------QNNREE----TPLFLAAREGSYETAKVLLDH 212
Query: 460 GAD 462
A+
Sbjct: 213 FAN 215
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 116 LENDTRGKDGFTPLAVAMQQG----------HDKVVAVL---------LENDTRGKVRLP 156
++ + RG DGFTPL +A G + AV+ L N T +
Sbjct: 2 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGET 60
Query: 157 ALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGG-------YLIKNEH-NPDV 208
ALH+ E S + + T +AA LI+N + D
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
G TPL +A+ EG+ L++ ADVN G + LH A+ + ++ + LL+N
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 180
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
AN D+ R ETPL LAAR + ++LL + A D IAQ+
Sbjct: 181 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 233
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 100/243 (41%), Gaps = 47/243 (19%)
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV-----------------RGE 280
DVN G TPL +AS C + ++ D P V GE
Sbjct: 3 DVNVRGPDGFTPLMIAS---CSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE 59
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLK 340
T LHLAAR +++D + LL A + + G T L A V + L + L
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVG 399
R +G T L +A +L +++G+ E LI + D + G + LH A + V
Sbjct: 120 ARMHDGTTPLILAARL-------AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 172
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
A +LLKN A D + N E TPL L+A EG + + +LL+H
Sbjct: 173 AAVVLLKNGANKDM---------------QNNREE----TPLFLAAREGSYETAKVLLDH 213
Query: 460 GAD 462
A+
Sbjct: 214 FAN 216
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 82/210 (39%), Gaps = 38/210 (18%)
Query: 302 GAQVDARAREGHTALSIAQKLGY-----ISVEESLGAAERSQLKKRG--------REGHT 348
G V+ R +G T L IA G S EE A S +G R G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 349 ALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVGVAELLLKN 407
AL +A + S + L+ A D N G TPLH D GV ++L++N
Sbjct: 61 ALHLAARY-------SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 113
Query: 408 NAQVDTPTKMDIATT----------------LLEYGAKPNAESVAGFTPLHLSASEGHAD 451
A D +M TT L+ A NA G + LH +A+ + D
Sbjct: 114 RA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 172
Query: 452 MSAMLLEHGADVSHAAKEGHTALSIAQKLG 481
+ +LL++GA+ T L +A + G
Sbjct: 173 AAVVLLKNGANKDMQNNREETPLFLAAREG 202
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
+G TPLH A GV ILL RA ++N G TPL +A+ + +V L+ D
Sbjct: 82 NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 141
Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
A+ + G+T LH AA N T+ + ILL + A DA+ + T L +A + G +
Sbjct: 142 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK 201
Query: 330 SL 331
+L
Sbjct: 202 AL 203
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
G TPL +A+ EG+ L+ AD+N + SG T LH A+ + V LL + AN
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR 177
Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
D + ETPL LAAR + + LL N A
Sbjct: 178 DAQDDKDETPLFLAAREGSYEASKALLDNFAN 209
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270
K+G T LH+A+ + A LLD AD N +G TPLH A M + LL+N A
Sbjct: 49 KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA 108
Query: 271 -NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
N + G TPL LAAR ++ L+ A ++A G TAL A
Sbjct: 109 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWA 158
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 95/234 (40%), Gaps = 43/234 (18%)
Query: 246 GLTPLHVASFMG---------------CMNIVIYLLQNDANPDIPTVR-GETPLHLAARA 289
GLTPL +A+ G ++ LL A + + GET LHLAAR
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 290 NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTA 349
+ D + LL GA +++ G T L A + V + L + L R +G T
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP 121
Query: 350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVGVAELLLKNN 408
L +A +L +++G+ E LI A D N G T LH A + +LL ++
Sbjct: 122 LILAARL-------AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH 174
Query: 409 AQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGAD 462
A D D TPL L+A EG + S LL++ A+
Sbjct: 175 ANRDAQDDKD-------------------ETPLFLAAREGSYEASKALLDNFAN 209
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
LI + + + SG T LH A+ N NILL A+ + TPL +A+ G
Sbjct: 137 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 196
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
LL N AN +I P +A+ DI+R+L
Sbjct: 197 YEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 372 LIIAKGDGEKHKN-GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKP 430
L+ A D N G TPLH D +GV ++LL+N A T L
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA-----------TNL------- 111
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
NA G TPL L+A M L+ AD++ A G TAL A
Sbjct: 112 NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWA 158
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 108/263 (41%), Gaps = 53/263 (20%)
Query: 232 LLDKRADVNFSAKSG-LTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
LL+ A+VNF + G TPLH A M +IV LL++ A+P + G TP LAA A
Sbjct: 44 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103
Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350
++++ L GA V+ G TA A G + + L KRG
Sbjct: 104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL--------YKRG------- 148
Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQ 410
+++ K E L K G T L A++ V V ++LL
Sbjct: 149 ------ANVNLRRKTKEDQERL---------RKGGATALMDAAEKGHVEVLKILLD---- 189
Query: 411 VDTPTKMDIATTLLEYGAKPNAESVAGFTPL-HLSASEGHADMSA---MLLEHGADVSHA 466
E GA NA G L H S +D+ A +LL+HGADV+
Sbjct: 190 --------------EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 235
Query: 467 AKEGHTALSIAQKLGYISVEESL 489
+ G T L +A + ++ + + L
Sbjct: 236 GERGKTPLILAVEKKHLGLVQRL 258
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 54/287 (18%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
G+TPLH A E + +LL AD K+G TP +A+ G + ++ L A+
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332
+ G T AA + ++ L + GA V+ R +
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK---------------------- 156
Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLC 392
E + ++G G TAL A + G++ V + L+ G ++ C
Sbjct: 157 TKEDQERLRKG--GATALMDAAEKGHVE-------VLKILLDEMG---------ADVNAC 198
Query: 393 AQEDRVGVAELLL-KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
R + LL +++ V+ T + LL++GA N G TPL L+ + H
Sbjct: 199 DNMGRNALIHALLSSDDSDVEAITHL-----LLDHGADVNVRGERGKTPLILAVEKKHLG 253
Query: 452 MSAMLLEHG-ADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
+ LLE +++ +G TAL +A VE LK + E L
Sbjct: 254 LVQRLLEQEHIEINDTDSDGKTALLLA-------VELKLKKIAELLC 293
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 35/237 (14%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+++ +P + K+G TP +A+ G+ + + L K ADVN G T A+ G
Sbjct: 78 LLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137
Query: 259 MNIVIYLLQNDAN--------PDIPTVR--GETPLHLAARANQTDIIRILLRN-GAQVDA 307
+ + +L + AN D +R G T L AA ++++ILL GA V+A
Sbjct: 138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197
Query: 308 RAREGHTALSIAQKLGYISVEES-------LGAAERSQLKKRGREGHTALSIAQKLGYIS 360
G AL A +S ++S L + + RG G T L +A
Sbjct: 198 CDNMGRNALIHA----LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA------- 246
Query: 361 VEESLKGVTETLI----IAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDT 413
VE+ G+ + L+ I D + +G T L L + +AELL K A D
Sbjct: 247 VEKKHLGLVQRLLEQEHIEINDTD--SDGKTALLLAVELKLKKIAELLCKRGASTDC 301
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 417 MDIATTLLEYGAKPN-AESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALS 475
+D+ LLE GA N E G+TPLH + D+ +LL HGAD K G T
Sbjct: 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFI 97
Query: 476 IAQKLGYISV 485
+A G + +
Sbjct: 98 LAAIAGSVKL 107
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG- 257
L+K +P + G + +H+A+ +G+ + L+ K DV+ ++G+TPL A++
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 258 CMNIVIYLLQNDANPDI-PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
++ LL + + ++ T LH A A T +I +LL GA VDA+ +G +AL
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Query: 317 SIAQK 321
+A++
Sbjct: 215 DLAKQ 219
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 45/216 (20%)
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARARE-GHTALSIAQKLGYISVEESLGA 333
P T LH AA N+ D+++ + GA VD + T L A + G++S+
Sbjct: 38 PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV----- 92
Query: 334 AERSQLKKRGR-------EGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG--EKHKN 384
QL K G EG + + +A + G+ S+ L IAKG +N
Sbjct: 93 ---VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL--------IAKGQDVDMMDQN 141
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPN-AESVAGFTPLHL 443
G+TPL A VD PT++ LL + N + T LH
Sbjct: 142 GMTPLMWAAYRTH------------SVD-PTRL-----LLTFNVSVNLGDKYHKNTALHW 183
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
+ G+ + ++LLE GA+V +G +AL +A++
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 248 TPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
TPLH A+ G +++V+ L++ A+P + G + +HLAA+ T I+ L+ G VD
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 308 RAREGHTALSIA 319
+ G T L A
Sbjct: 138 MDQNGMTPLMWA 149
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV--ANILLDKRADVNFSA 243
L++ G+ + YLI + D+ ++G TPL A+ Y V +LL VN
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA-YRTHSVDPTRLLLTFNVSVNLGD 173
Query: 244 KSGL-TPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII 295
K T LH A G ++ LL+ AN D ++GE+ L LA + +I
Sbjct: 174 KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI 226
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 45 SKDGHLHVVTELLSRGANVDSATKKGNTALHIAS-LGEFLVPVWL------GDFKQGDGF 97
++ GHL +V +L+ GA+ +G + +H+A+ G + +L D +G
Sbjct: 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM 143
Query: 98 TPLAVAMQQGH--DKVVAVLLEN------DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
TPL A + H D +L N D K+ T L A+ G+ V+++LLE
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN--TALHWAVLAGNTTVISLLLE 198
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
+ G T L V F G + + LL+ A+P++ G +P+H AAR D +++L+ +GA
Sbjct: 42 RFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGA 100
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
V+A G + +A + G+ SV L A S L R G T L +A++ G ++ +
Sbjct: 101 DVNALDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMD 158
Query: 364 SLKG 367
L+G
Sbjct: 159 ILQG 162
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
+A LL+ GA PN + +G +P+H +A G D +L+EHGADV+ G + +A
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 479 KLGYISV 485
+ G+ SV
Sbjct: 118 REGHSSV 124
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
+PD ++ G T L + +G+ VA LL + A N SG +P+H A+ G ++ +
Sbjct: 36 HPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKV 94
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
L+++ A+ + G P+HLA R + ++ L + + R G T L +A++ G
Sbjct: 95 LVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRG 152
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
G+ A L+K +P+V SG +P+H A+ G +L++ ADVN +G P+
Sbjct: 54 GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI 113
Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
H+A G ++V + L +++ G TPL LA + +++ IL
Sbjct: 114 HLAIREGHSSVVSF-LAPESDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSI 476
+D L+E+GA NA G P+HL+ EGH+ + + L +D+ H G T L +
Sbjct: 89 LDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLEL 147
Query: 477 AQKLGYISVEESLKG 491
A++ G ++ + L+G
Sbjct: 148 ARQRGAQNLMDILQG 162
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 52 VVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWL-----GDFKQGD--GFTPLAVAM 104
V ELL +GA+ + G + +H A+ FL + + D D G P+ +A+
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 105 QQGHDKVVAVLL-ENDTRGKD--GFTPLAVAMQQGHDKVVAVL 144
++GH VV+ L E+D +D G TPL +A Q+G ++ +L
Sbjct: 118 REGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 45 SKDGHLHVVTELLSRGANVDSATKKGNTALHIA------SLGEFLVPVWLGDFKQGDGFT 98
++ G L + L+ GA+V++ G+ +H+A S+ FL P + G T
Sbjct: 84 ARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGLT 143
Query: 99 PLAVAMQQGHDKVVAVL 115
PL +A Q+G ++ +L
Sbjct: 144 PLELARQRGAQNLMDIL 160
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
GN L+ NPD+ ++GF +H A+ G LL+ +ADVN G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 251 HVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
H+A+ G + +V +L+++ A N +G+T LA + +++ ++ NGA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
G T L V +G I LL ANPD+ G +H AARA Q D ++ LL A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
+ EG+ L +A K G++ V E L S + R +G TA +A+ G V
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 416 KMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTAL 474
++D TLLE+ A N E G PLHL+A EGH + L++H A +V H +G TA
Sbjct: 82 QLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 475 SIAQKLGYISV 485
+A+ G V
Sbjct: 142 DLARLYGRNEV 152
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+IA LL GA P+ + GF +H +A G D LLE ADV+ EG+ L +A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 478 QKLGYISVEESL 489
K G++ V E L
Sbjct: 111 AKEGHLRVVEFL 122
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 11 AARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGA-NVDSATKK 69
AARAG LD + L+ D+ +K+GHL VV L+ A NV K
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 70 GNTALHIASL 79
G+TA +A L
Sbjct: 137 GDTACDLARL 146
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 48 GHLHVVTELLSRGANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQGDGFTPLA 101
G L +T LL NV++ G TAL + LG L+ D K GF +
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIH 75
Query: 102 VAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
A + G + LLE + +G PL +A ++GH +VV L++
Sbjct: 76 DAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
+ G T L V F G + + LL+ A+P++ G +P+H AAR D +++L+ +GA
Sbjct: 40 RFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGA 98
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
V+A G + +A + G+ SV L A S L R G T L +A++ G ++ +
Sbjct: 99 DVNALDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMD 156
Query: 364 SLKG 367
L+G
Sbjct: 157 ILQG 160
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
+A LL+ GA PN + +G +P+H +A G D +L+EHGADV+ G + +A
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 479 KLGYISV 485
+ G+ SV
Sbjct: 116 REGHSSV 122
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
+PD ++ G T L + +G+ VA LL + A N SG +P+H A+ G ++ +
Sbjct: 34 HPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKV 92
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
L+++ A+ + G P+HLA R + ++ L + + R G T L +A++ G
Sbjct: 93 LVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRG 150
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
G+ A L+K +P+V SG +P+H A+ G +L++ ADVN +G P+
Sbjct: 52 GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI 111
Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
H+A G ++V + L +++ G TPL LA + +++ IL
Sbjct: 112 HLAIREGHSSVVSF-LAPESDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSI 476
+D L+E+GA NA G P+HL+ EGH+ + + L +D+ H G T L +
Sbjct: 87 LDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLEL 145
Query: 477 AQKLGYISVEESLKG 491
A++ G ++ + L+G
Sbjct: 146 ARQRGAQNLMDILQG 160
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 52 VVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWL-----GDFKQGD--GFTPLAVAM 104
V ELL +GA+ + G + +H A+ FL + + D D G P+ +A+
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 105 QQGHDKVVAVLL-ENDTRGKD--GFTPLAVAMQQGHDKVVAVL 144
++GH VV+ L E+D +D G TPL +A Q+G ++ +L
Sbjct: 116 REGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 45 SKDGHLHVVTELLSRGANVDSATKKGNTALHIA------SLGEFLVPVWLGDFKQGDGFT 98
++ G L + L+ GA+V++ G+ +H+A S+ FL P + G T
Sbjct: 82 ARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGLT 141
Query: 99 PLAVAMQQGHDKVVAVL 115
PL +A Q+G ++ +L
Sbjct: 142 PLELARQRGAQNLMDIL 158
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
GN L+ NPD+ ++GF +H A+ G LL+ +ADVN G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 251 HVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
H+A+ G + +V +L+++ A N +G+T LA + +++ ++ NGA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
G T L V +G I LL ANPD+ G +H AARA D ++ LL N A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
+ EG+ L +A K G++ V E L S + R +G TA +A+ G V
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+IA LL GA P+ + GF +H +A G D LLE+ ADV+ EG+ L +A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLA 110
Query: 478 QKLGYISVEESL 489
K G++ V E L
Sbjct: 111 AKEGHLRVVEFL 122
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTALS 475
+D TLLE A N E G PLHL+A EGH + L++H A +V H +G TA
Sbjct: 83 LDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 476 IAQKLGYISV 485
+A+ G V
Sbjct: 143 LARLYGRNEV 152
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 11 AARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGA-NVDSATKK 69
AARAG LD + L+N D+ +K+GHL VV L+ A NV K
Sbjct: 77 AARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 70 GNTALHIASL 79
G+TA +A L
Sbjct: 137 GDTACDLARL 146
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 48 GHLHVVTELLSRGANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQGDGFTPLA 101
G L +T LL NV++ G TAL + LG L+ D K GF +
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIH 75
Query: 102 VAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
A + G + LLEN + +G PL +A ++GH +VV L++
Sbjct: 76 DAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
G T L + N R+LLR GA D + R G + A + G++ ++L ++
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTL-LENQAD 95
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRV 398
+ EG+ L +A K G++ V E L T + + G ++ G T L R
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV-----GHRNHKGDTACDLARLYGRN 150
Query: 399 GVAELLLKNNA 409
V L+ N A
Sbjct: 151 EVVSLMQANGA 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
GN L+ NPD+ ++GF +H A+ G LL+ +ADVN G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 251 HVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
H+A+ G + +V +L+++ A N +G+T LA + +++ ++ NGA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
G T L V +G I LL ANPD+ G +H AARA D ++ LL A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
+ EG+ L +A K G++ V E L S + R +G TA +A+ G V
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTALS 475
+D TLLE+ A N E G PLHL+A EGH + L++H A +V H +G TA
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 476 IAQKLGYISV 485
+A+ G V
Sbjct: 143 LARLYGRNEV 152
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+IA LL GA P+ + GF +H +A G D LLE ADV+ EG+ L +A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 478 QKLGYISVEESL 489
K G++ V E L
Sbjct: 111 AKEGHLRVVEFL 122
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 11 AARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGA-NVDSATKK 69
AARAG LD + L+ D+ +K+GHL VV L+ A NV K
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 70 GNTALHIASL 79
G+TA +A L
Sbjct: 137 GDTACDLARL 146
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
G T L + N R+LLR GA D + R G + A + G++ ++L ++
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTL-LEFQAD 95
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRV 398
+ EG+ L +A K G++ V E L T + + G ++ G T L R
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV-----GHRNHKGDTACDLARLYGRN 150
Query: 399 GVAELLLKNNA 409
V L+ N A
Sbjct: 151 EVVSLMQANGA 161
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 48 GHLHVVTELLSRGANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQGDGFTPLA 101
G L +T LL NV++ G TAL + LG L+ D K GF +
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIH 75
Query: 102 VAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
A + G + LLE + +G PL +A ++GH +VV L++
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 30/247 (12%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
S ++P+H A+ +G++ L+ + VN ++PLH A G ++ V LL++ A
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ T TPL A + D + +LL++GA V + + + A + G++ SL
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 176
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL 391
+ G H + L Y++ E + + L+ + D + K +PLH
Sbjct: 177 -------IAYGGNIDHKISHLGTPL-YLACENQQRACVKKLLESGADVNQGKGQDSPLH- 227
Query: 392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
A V T ++ ++A L+++GA A++ G P+ L E +
Sbjct: 228 -----------------AVVRTASE-ELACLLMDFGADTQAKNAEGKRPVELVPPE--SP 267
Query: 452 MSAMLLE 458
++ + LE
Sbjct: 268 LAQLFLE 274
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 386 LTPLHLCAQEDRVGVAELLLKNNAQVD-------TPT-------KMDIATTLLEYGAKPN 431
++PLH + ++LLK+ AQV+ TP D LL++GA
Sbjct: 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
Query: 432 AESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG 491
ES +P+H +A GH + L+ +G ++ H T L Y++ E +
Sbjct: 153 PESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL-------YLACENQQRA 204
Query: 492 VTETLIIAKGD 502
+ L+ + D
Sbjct: 205 CVKKLLESGAD 215
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
L+ G N + +PLH + GH +LL+HGA V+ + HT L
Sbjct: 77 NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL 129
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
GN L+ NPD+ ++GF +H A+ G LL+ +ADVN G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 251 HVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
H+A+ G + +V +L+++ A N +G+T LA + +++ ++ NGA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
G T L V +G I LL ANPD+ G +H AARA D ++ LL A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
+ EG+ L +A K G++ V E L S + R +G TA +A+ G V
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTALS 475
+D TLLE+ A N E G PLHL+A EGH + L++H A +V H +G TA
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 476 IAQKLGYISV 485
+A+ G V
Sbjct: 143 LARLYGRNEV 152
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+IA LL GA P+ + GF +H +A G D LLE ADV+ EG+ L +A
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 478 QKLGYISVEESL 489
K G++ V E L
Sbjct: 111 AKEGHLRVVEFL 122
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 11 AARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGA-NVDSATKK 69
AARAG LD + L+ D+ +K+GHL VV L+ A NV K
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 70 GNTALHIASL 79
G+TA +A L
Sbjct: 137 GDTACDLARL 146
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
G T L + N R+LLR GA D + R G + A + G++ ++L ++
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTL-LEFQAD 95
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRV 398
+ EG+ L +A K G++ V E L T + + G ++ G T L R
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV-----GHRNHKGDTACDLARLYGRN 150
Query: 399 GVAELLLKNNA 409
V L+ N A
Sbjct: 151 EVVSLMQANGA 161
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 48 GHLHVVTELLSRGANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQGDGFTPLA 101
G L +T LL NV++ G TAL + LG L+ D K GF +
Sbjct: 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIH 75
Query: 102 VAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
A + G + LLE + +G PL +A ++GH +VV L++
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
D G TPL+IA H + +A L+D+ AD+N +P A G I+ Y+L
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 267 QNDANPDIP--TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY 324
++ A PD+ G L AA D +++LL +G RE + GY
Sbjct: 93 KH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG-------RED---IDFQNDFGY 141
Query: 325 ISVEESLGAAERSQLKK---------------RGREGHTALSIAQKLGYISVEESL 365
++ E++G E +QL + + G TA+ A + GY + + L
Sbjct: 142 TALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 449 HADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+ D+ +L+E+GAD S G TA+ A + GY + + L
Sbjct: 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 199 LIKNEH-NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
LI+N + D G TPL +A+ EG+ L++ ADVN G + LH A+ +
Sbjct: 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 136
Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
++ + LL+N AN D+ R ETPL LAAR + ++LL + A D
Sbjct: 137 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
T ++G T LH+A+ Y A LL+ AD N G TPLH A + L++N
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 269 DA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
A + D G TPL LAAR ++ L+ + A V+A G +AL
Sbjct: 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 18/185 (9%)
Query: 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
N + ++G T LH+A+ + LL+ A+ +I G TPLH A A+ + +IL+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 300 RNGA-QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358
RN A +DAR +G T L +A +L + E L H ++ LG
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLI------------NSHADVNAVDDLGK 126
Query: 359 ISVE---ESLKGVTETLIIAKGDGEKHKNGL--TPLHLCAQEDRVGVAELLLKNNAQVDT 413
++ +++ G + +N TPL L A+E A++LL + A D
Sbjct: 127 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 186
Query: 414 PTKMD 418
MD
Sbjct: 187 TDHMD 191
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
GET LHLAAR +++D + LL A + + G T L A V + L +
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDR 397
L R +G T L +A +L +++G+ E LI + D + G + LH A +
Sbjct: 85 LDARMHDGTTPLILAARL-------AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
V A +LLKN A D + N E TPL L+A EG + + +LL
Sbjct: 138 VDAAVVLLKNGANKDM---------------QNNREE----TPLFLAAREGSYETAKVLL 178
Query: 458 EHGAD 462
+H A+
Sbjct: 179 DHFAN 183
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAK 244
L++ + L++ + ++ G TPLH A +GV IL+ RA D++
Sbjct: 31 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 90
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
G TPL +A+ + ++ L+ + A+ + G++ LH AA N D +LL+NGA
Sbjct: 91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Query: 305 VDARAREGHTALSIAQKLG 323
D + T L +A + G
Sbjct: 151 KDMQNNREETPLFLAAREG 169
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 49/234 (20%)
Query: 52 VVTELLSRGANVDSATKK-GNTALHIAS-------LGEFLVPVWLGDFKQGDGFTPLAVA 103
V+++ + +GA++ + T + G TALH+A+ L + + G TPL A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 104 MQQGHDKVVAVLLEN-----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRG 151
+ V +L+ N D R DG TPL +A + + ++ L+ + D G
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 125
Query: 152 KVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
K ALH ++ N L+KN N D+ +
Sbjct: 126 K---SALH--------------------------WAAAVNNVDAAVVLLKNGANKDMQNN 156
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
TPL +A+ G+ A +LLD A+ + + P +A +IV L
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 25/155 (16%)
Query: 344 REGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVGVAE 402
R G TAL +A + S + L+ A D N G TPLH D GV +
Sbjct: 23 RTGETALHLAARY-------SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 75
Query: 403 LLLKNNAQVDTPTKMDIATT----------------LLEYGAKPNAESVAGFTPLHLSAS 446
+L++N A D +M TT L+ A NA G + LH +A+
Sbjct: 76 ILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 134
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLG 481
+ D + +LL++GA+ T L +A + G
Sbjct: 135 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 216 PLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIP 275
PLH A+ GN LD R VN K+G T L+ A G +IV L P+I
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF---TQPNIE 132
Query: 276 TVR----GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ G+T LH AA DI+++LL GA+ D R +I +KL + + +
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR--------NIEKKLAF---DXAT 181
Query: 332 GAAERSQLKKR-GREGHTALSIAQKLGYISVEES 364
AA S LKK+ G + LS A+ Y+ E+S
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAED--YLDDEDS 213
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
+ PLH AA+ +R L N V+ + G TAL A G+ + E L +L
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 340 KKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG 377
++ + G TAL A GY + + L++AKG
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQ--------LLLAKG 163
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 37/252 (14%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLL----QNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
+ G TPLH+A G + V L+ Q DI +TPLHLA ++R+L+
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 300 RNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKL 356
GA A R G TA +A + + +L A L+ R +G TAL +A
Sbjct: 67 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN- 125
Query: 357 GYISVEESLKGVTETLIIAKG---DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDT 413
+E+++ L++ +G D K+G +PL + + + + +LLL
Sbjct: 126 --TECQETVQ-----LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-------- 170
Query: 414 PTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTA 473
++GA NA+ +G + LH ++ G + L+ GAD S T
Sbjct: 171 -----------QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219
Query: 474 LSIAQKLGYISV 485
L +A+ I +
Sbjct: 220 LMVARSRRVIDI 231
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 91/222 (40%), Gaps = 39/222 (17%)
Query: 123 KDGFTPLAVAMQQGHDKVVAVLL--------ENDTRGKVRLPALHIXXXXXXXXXXXXXX 174
+DG TPL +A+ QG+ V L+ E D +R LH+
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI----------- 55
Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
T P+ V T A+ P + G T H+A + + LLD
Sbjct: 56 ----TTLPSVVRLLVTAGAS-----------PMALDRHGQTAAHLACEHRSPTCLRALLD 100
Query: 235 KRA----DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR-GETPLHLAARA 289
A D+ GLT LHVA C V LL+ A+ D ++ G +PL A
Sbjct: 101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160
Query: 290 NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
N ++++LL++GA V+A+ G +AL A G + + +L
Sbjct: 161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVN-FSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
G T LH+A + + +LL++ AD++ KSG +PL A +++V LLQ+ AN
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISV 327
+ G + LH A+ ++R L+R+GA + T L +A+ I +
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 231
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ 267
V KSG +PL A + + +LL A+VN SG + LH AS G + +V L++
Sbjct: 145 VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204
Query: 268 NDANPDIPTVRGETPLHLAARANQTDIIR 296
+ A+ + +TPL +A DI+R
Sbjct: 205 SGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 46 KDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWL--------GDFKQGDGF 97
++ L +V LL GANV++ G++ALH AS G L+P+ K
Sbjct: 159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS-GRGLLPLVRTLVRSGADSSLKNCHND 217
Query: 98 TPLAVAMQQGHDKVVAVLLENDTR 121
TPL VA + +V+ +L TR
Sbjct: 218 TPLMVARSR---RVIDILRGKATR 238
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
+ G T L V F G I + LL+ A+P++ G +P+H AAR D +++L+ +GA
Sbjct: 34 RFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA 92
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
V+ G + +A + G+ +V L A S L +R G T L +A + G + +
Sbjct: 93 DVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVD 150
Query: 364 SLKG 367
L+G
Sbjct: 151 ILQG 154
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
G+ A L+K +P+V SG +P+H A+ G +L++ ADVN +G P+
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105
Query: 251 HVASFMGCMNIVIYLLQNDANPDI--PTVRGETPLHLAARANQTDIIRIL 298
H+A G +V +L A D+ RG TPL LA + D++ IL
Sbjct: 106 HLAVQEGHTAVVSFLA---AESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
+PD ++ G T L + +G+ +A LL + A N SG +P+H A+ G ++ +
Sbjct: 28 HPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 86
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARARE--GHTALSIAQKL 322
L+++ A+ ++P G P+HLA + T ++ L A+ D R+ G T L +A +
Sbjct: 87 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELALQR 143
Query: 323 G 323
G
Sbjct: 144 G 144
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS-----------HAA 467
IA LL+ GA PN + +G +P+H +A G D +L+EHGADV+ A
Sbjct: 50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Query: 468 KEGHTALSIAQKLGYISVEESL 489
+EGHTA+ + +++ E L
Sbjct: 110 QEGHTAV-----VSFLAAESDL 126
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 52 VVTELLSRGANVDSATKKGNTALHIASLGEFL----VPVWLG---DFKQGDGFTPLAVAM 104
+ ELL +GA+ + G + +H A+ FL V V G + G G P+ +A+
Sbjct: 50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Query: 105 QQGHDKVVAVL-LENDTRGKD--GFTPLAVAMQQGHDKVVAVL 144
Q+GH VV+ L E+D +D G TPL +A+Q+G +V +L
Sbjct: 110 QEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSI 476
+D L+E+GA N G P+HL+ EGH + + L +D+ G T L +
Sbjct: 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL 139
Query: 477 AQKLGYISVEESLKG 491
A + G + + L+G
Sbjct: 140 ALQRGAQDLVDILQG 154
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 30/247 (12%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
S ++P+H A+ +G++ L+ + VN ++PLH A G ++ V LL++ A
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ T TPL A + D + +LL++GA V + + + A + G++ SL
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSL 120
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL 391
+ G H + L Y++ E + + L+ + D + K +PLH
Sbjct: 121 -------IAYGGNIDHKISHLGTPL-YLACENQQRACVKKLLESGADVNQGKGQDSPLHA 172
Query: 392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
A R EL A L+++GA A++ G P+ L E +
Sbjct: 173 VA---RTASEEL----------------ACLLMDFGADTQAKNAEGKRPVELVPPE--SP 211
Query: 452 MSAMLLE 458
++ + LE
Sbjct: 212 LAQLFLE 218
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 386 LTPLHLCAQEDRVGVAELLLKNNAQVD-------TPT-------KMDIATTLLEYGAKPN 431
++PLH + ++LLK+ AQV+ TP D LL++GA
Sbjct: 37 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
Query: 432 AESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG 491
ES +P+H +A GH + L+ +G ++ H T L Y++ E +
Sbjct: 97 PESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL-------YLACENQQRA 148
Query: 492 VTETLIIAKGD 502
+ L+ + D
Sbjct: 149 CVKKLLESGAD 159
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
L+ G N + +PLH + GH +LL+HGA V+ + HT L
Sbjct: 21 NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL 73
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
+ G T L V F G I + LL+ A+P++ G +P+H AAR D +++L+ +GA
Sbjct: 40 RFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA 98
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
V+ G + +A + G+ +V L A S L +R G T L +A + G + +
Sbjct: 99 DVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVD 156
Query: 364 SLKG 367
L+G
Sbjct: 157 ILQG 160
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
G+ A L+K +P+V SG +P+H A+ G +L++ ADVN +G P+
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 111
Query: 251 HVASFMGCMNIVIYLLQNDANPDI--PTVRGETPLHLAARANQTDIIRIL 298
H+A G +V +L A D+ RG TPL LA + D++ IL
Sbjct: 112 HLAVQEGHTAVVSFLA---AESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
+PD ++ G T L + +G+ +A LL + A N SG +P+H A+ G ++ +
Sbjct: 34 HPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 92
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARARE--GHTALSIAQKL 322
L+++ A+ ++P G P+HLA + T ++ L A+ D R+ G T L +A +
Sbjct: 93 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELALQR 149
Query: 323 G 323
G
Sbjct: 150 G 150
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS-----------HAA 467
IA LL+ GA PN + +G +P+H +A G D +L+EHGADV+ A
Sbjct: 56 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
Query: 468 KEGHTAL 474
+EGHTA+
Sbjct: 116 QEGHTAV 122
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 52 VVTELLSRGANVDSATKKGNTALHIASLGEFL----VPVWLG---DFKQGDGFTPLAVAM 104
+ ELL +GA+ + G + +H A+ FL V V G + G G P+ +A+
Sbjct: 56 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
Query: 105 QQGHDKVVAVL-LENDTRGKD--GFTPLAVAMQQGHDKVVAVL 144
Q+GH VV+ L E+D +D G TPL +A+Q+G +V +L
Sbjct: 116 QEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSI 476
+D L+E+GA N G P+HL+ EGH + + L +D+ G T L +
Sbjct: 87 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL 145
Query: 477 AQKLGYISVEESLKG 491
A + G + + L+G
Sbjct: 146 ALQRGAQDLVDILQG 160
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA NA+ G+TPLHL+A EGH ++ +LL+ GADV+ K G TA I+
Sbjct: 16 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Query: 478 QKLGYISVEESLK 490
G + E L+
Sbjct: 76 IDNGNEDLAEILQ 88
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V+A+ ++G+T L +A + G++ + E L A + + + +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKF 67
Query: 346 GHTALSIAQKLGYISVEESLK 366
G TA I+ G + E L+
Sbjct: 68 GKTAFDISIDNGNEDLAEILQ 88
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 253 ASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREG 312
A+ G + V L+ N A+ + G TPLHLAAR +I+ +LL+ GA V+A+ + G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 313 HTALSIA 319
TA I+
Sbjct: 69 KTAFDIS 75
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADVN K G TPLH+A+ G + IV LL+ A+ + G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 280 ETPLHLAARANQTDIIRILLR 300
+T ++ D+ IL +
Sbjct: 69 KTAFDISIDNGNEDLAEILQK 89
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 7 SFLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSA 66
L AARAG D++ + N D+ +++GHL +V LL GA+V++
Sbjct: 5 KLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 67 TKKGNTALHIA 77
K G TA I+
Sbjct: 65 DKFGKTAFDIS 75
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
L+ N + + K G+TPLH+A+ G+ + +LL ADVN K G T ++
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
K K+G TPLHL A+E + + E+LLK GA NA+ G T
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLK-------------------AGADVNAQDKFGKTA 71
Query: 441 LHLSASEGHADMSAML 456
+S G+ D++ +L
Sbjct: 72 FDISIDNGNEDLAEIL 87
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 103 AMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
A + G D V +L+ N + + KDG+TPL +A ++GH ++V VLL+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 92 KQGDGFTPLAVAMQQGHDKVVAVLLE--NDTRGKDGF--TPLAVAMQQGHDKVVAVL 144
K DG+TPL +A ++GH ++V VLL+ D +D F T +++ G++ + +L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+A G D +L+ +GADV+ K+G+T L +A + G++ + E L
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPLH+A +A LL D G TPLH+A GC+ V L Q+ P +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 275 PTV------RGETPLHLAARANQTDIIRILLRNGAQVDAR-AREGHTALSIA---QKLGY 324
++ G T LHLA+ I+ +L+ GA V+A+ G TAL +A Q
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 325 ISVEESLGAAERSQLKKRGRE------GHTALSIAQKLGYISVE 362
+S+ G A+ +++ +G G + I Q+LG +++E
Sbjct: 167 VSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDK------RADVNFSAKSGLTPLHVASFMGC 258
+P++ G TPLH+A G +L + + + +G T LH+AS G
Sbjct: 70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129
Query: 259 MNIVIYL--LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
+ IV L L D N P G T LHLA D++ +LL+ GA V+ +G++
Sbjct: 130 LGIVELLVSLGADVNAQEP-CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 188
Query: 317 S---------IAQKLGYISVE 328
I Q+LG +++E
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLE 209
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 63/217 (29%)
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
+TPLHLA NQ +I LL G + R G+T L +A + G ++ S+G +S
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA---SVGVLTQSCT 102
Query: 340 KKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG 399
SI + Y NG T LHL + +G
Sbjct: 103 TPHLH------SILKATNY-------------------------NGHTCLHLASIHGYLG 131
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNA-ESVAGFTPLHLSASEGHADMSAMLLE 458
+ ELL+ GA NA E G T LHL+ + D+ ++LL+
Sbjct: 132 IVELLVS-------------------LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Query: 459 HGADVSHAAKEGHTALS---------IAQKLGYISVE 486
GADV+ +G++ I Q+LG +++E
Sbjct: 173 CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
A +NF TPLH+A I LL +P++ RG TPLHLA +
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 95
Query: 297 ILLRNGAQ------VDARAREGHTALSIAQKLGYISVEE---SLGAAERSQLKKRGREGH 347
+L ++ + A GHT L +A GY+ + E SLGA +Q GR
Sbjct: 96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR--- 152
Query: 348 TALSIAQKL 356
TAL +A L
Sbjct: 153 TALHLAVDL 161
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 400 VAELLLKNNAQVDTPTKM-------DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM 452
+A L +NN Q TP + +IA LL G P G TPLHL+ +G
Sbjct: 35 LAFLNFQNNLQ-QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG-CLA 92
Query: 453 SAMLLEHGADVSH-------AAKEGHTALSIAQKLGYISVEESL 489
S +L H GHT L +A GY+ + E L
Sbjct: 93 SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPLH+A +A LL D G TPLH+A GC+ V L Q+ P +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 275 PTV------RGETPLHLAARANQTDIIRILLRNGAQVDAR-AREGHTALSIA---QKLGY 324
++ G T LHLA+ I+ +L+ GA V+A+ G TAL +A Q
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 163
Query: 325 ISVEESLGAAERSQLKKRGRE------GHTALSIAQKLGYISVE 362
+S+ G A+ +++ +G G + I Q+LG +++E
Sbjct: 164 VSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 206
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDK------RADVNFSAKSGLTPLHVASFMGC 258
+P++ G TPLH+A G +L + + + +G T LH+AS G
Sbjct: 67 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 126
Query: 259 MNIVIYL--LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
+ IV L L D N P G T LHLA D++ +LL+ GA V+ +G++
Sbjct: 127 LGIVELLVSLGADVNAQEP-CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY 185
Query: 317 S---------IAQKLGYISVE 328
I Q+LG +++E
Sbjct: 186 QLTWGRPSTRIQQQLGQLTLE 206
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 61/216 (28%)
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
+TPLHLA NQ +I LL G + R G+T L +A + G ++ S+G +S
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA---SVGVLTQSCT 99
Query: 340 KKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG 399
SI + Y NG T LHL + +G
Sbjct: 100 TPHLH------SILKATNY-------------------------NGHTCLHLASIHGYLG 128
Query: 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
+ ELL+ A V+ E G T LHL+ + D+ ++LL+
Sbjct: 129 IVELLVSLGADVNA------------------QEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 460 GADVSHAAKEGHTALS---------IAQKLGYISVE 486
GADV+ +G++ I Q+LG +++E
Sbjct: 171 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 206
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
A +NF TPLH+A I LL +P++ RG TPLHLA +
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 92
Query: 297 ILLRNGAQ------VDARAREGHTALSIAQKLGYISVEE---SLGAAERSQLKKRGREGH 347
+L ++ + A GHT L +A GY+ + E SLGA +Q GR
Sbjct: 93 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR--- 149
Query: 348 TALSIAQKL 356
TAL +A L
Sbjct: 150 TALHLAVDL 158
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 400 VAELLLKNNAQVDTPTKM-------DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM 452
+A L +NN Q TP + +IA LL G P G TPLHL+ +G
Sbjct: 32 LAFLNFQNNLQ-QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG-CLA 89
Query: 453 SAMLLEHGADVSH-------AAKEGHTALSIAQKLGYISVEESL 489
S +L H GHT L +A GY+ + E L
Sbjct: 90 SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 133
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
N + ++G T LH+A+ + LL+ A+ I G TPLH A A+ + +ILL
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 300 RNGA-QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358
RN A +DAR +G T L +A +L + E L H ++ LG
Sbjct: 76 RNRATDLDARMHDGTTPLILAARLALEGMLEDLI------------NSHADVNAVDDLGK 123
Query: 359 ISVE---ESLKGVTETLIIAKGDGEKHKNGL--TPLHLCAQEDRVGVAELLLKNNAQVDT 413
++ +++ G + +N TPL L A+E A++LL + A D
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDI 183
Query: 414 PTKMD 418
MD
Sbjct: 184 TDHMD 188
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
D G TPL +A+ EG+ L++ ADVN G + LH A+ + ++ + LL
Sbjct: 83 DARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 142
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
+N AN D+ + ETPL LAAR + ++LL + A D
Sbjct: 143 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRD 182
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
T ++G T LH+A+ Y A LL+ AD G TPLH A + LL+N
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
Query: 269 DA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
A + D G TPL LAAR ++ L+ + A V+A G +AL
Sbjct: 78 RATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSAL 126
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 27/185 (14%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
GET LHLAAR +++D + LL A + G T L A V + L +
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDR 397
L R +G T L +A +L +L+G+ E LI + D + G + LH A +
Sbjct: 82 LDARMHDGTTPLILAARL-------ALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 134
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
V A +LLKN A D + N E TPL L+A EG + + +LL
Sbjct: 135 VDAAVVLLKNGANKDM---------------QNNKEE----TPLFLAAREGSYETAKVLL 175
Query: 458 EHGAD 462
+H A+
Sbjct: 176 DHFAN 180
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
+ G TPLH A +GV ILL RA D++ G TPL +A+ + ++ L+
Sbjct: 50 IQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLI 109
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
+ A+ + G++ LH AA N D +LL+NGA D + + T L +A + G
Sbjct: 110 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREG 166
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 49/234 (20%)
Query: 52 VVTELLSRGANVDSATKK-GNTALHIAS-------LGEFLVPVWLGDFKQGDGFTPLAVA 103
V+++ + +GA++ + T + G TALH+A+ L + G TPL A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 104 MQQGHDKVVAVLLEN-----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRG 151
+ V +LL N D R DG TPL +A + + ++ L+ + D G
Sbjct: 63 VSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLG 122
Query: 152 KVRLPALHIXXXXXXXXXXXXXXEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
K ALH ++ N L+KN N D+ +
Sbjct: 123 K---SALH--------------------------WAAAVNNVDAAVVLLKNGANKDMQNN 153
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
TPL +A+ G+ A +LLD A+ + + P +A +IV L
Sbjct: 154 KEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 25/155 (16%)
Query: 344 REGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKN-GLTPLHLCAQEDRVGVAE 402
R G TAL +A + S + L+ A D N G TPLH D GV +
Sbjct: 20 RTGETALHLAARY-------SRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQ 72
Query: 403 LLLKNNAQVDTPTKMDIATT----------------LLEYGAKPNAESVAGFTPLHLSAS 446
+LL+N A D +M TT L+ A NA G + LH +A+
Sbjct: 73 ILLRNRA-TDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAA 131
Query: 447 EGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLG 481
+ D + +LL++GA+ + T L +A + G
Sbjct: 132 VNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREG 166
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 16/124 (12%)
Query: 211 KSGFTPLHIASHYGNEG-----VANILLDKRADVNFSAKS--------GLTPLHVASFMG 257
++G T L I +H NEG A +L++K A V++ + G T LH A+ +
Sbjct: 233 RNGXTALXIVAH--NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290
Query: 258 CMNIVIYLL-QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
IV YL+ + +N D G+TP+ LAA+ + +++ L++ GA V+A HTA
Sbjct: 291 NXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTAR 350
Query: 317 SIAQ 320
+AQ
Sbjct: 351 QLAQ 354
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 94/246 (38%), Gaps = 52/246 (21%)
Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
ADVN TPL +A +V YL + A+P I + LH AA AN+
Sbjct: 157 ADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAA-ANRDFGXX 215
Query: 297 ILLRNGAQ----VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSI 352
+ N + ++ R G TAL I EG ++
Sbjct: 216 VYXLNSTKLKGDIEELDRNGXTALXIVAH----------------------NEGRDQVAS 253
Query: 353 AQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD 412
A+ L VE+ K + A+ D EK+K G T LH AQ + + L+
Sbjct: 254 AKLL----VEKGAK--VDYDGAARKDSEKYK-GRTALHYAAQVSNXPIVKYLVG------ 300
Query: 413 TPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHT 472
E G+ + + G TP+ L+A EG ++ L++ GA V HT
Sbjct: 301 ------------EKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHT 348
Query: 473 ALSIAQ 478
A +AQ
Sbjct: 349 ARQLAQ 354
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILL-DKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
D G T LH A+ N + L+ +K ++ + + G TP+ +A+ G + +V YL
Sbjct: 273 DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
+Q A+ + T LA N +I+ I R
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 56 LLSRGANVD--------SATKKGNTALHIASL--GEFLVPVWLG------DFKQGDGFTP 99
L+ +GA VD S KG TALH A+ +V +G D + DG TP
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 100 LAVAMQQGHDKVVAVLLE 117
+ +A Q+G +VV L++
Sbjct: 317 IXLAAQEGRIEVVXYLIQ 334
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 90 DFKQGDGFTPLAVAMQQGHDKVVAVLL-----ENDTRGKDGFTPLAVAMQQGHDKVVAVL 144
D ++ G T L A Q + +V L+ D + +DG TP+ +A Q+G +VV L
Sbjct: 273 DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 145 LE 146
++
Sbjct: 333 IQ 334
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
D G TPL +A+ EG+ L++ ADVN G + LH A+ + ++ + LL
Sbjct: 9 DARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 68
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
+N AN D+ + ETPL LAAR + ++LL + A D IAQ+
Sbjct: 69 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 123
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKM--------------DIATTLLEYGAK 429
+G TPL L A+ G+ E L+ ++A V+ + D A LL+ GA
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGAD 462
+ ++ TPL L+A EG + + +LL+H A+
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
L+KN N D+ + TPL +A+ G+ A +LLD A+ + + P +A
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 126
Query: 259 MNIVIYL 265
+IV L
Sbjct: 127 HDIVRLL 133
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
++IV +L+QN N D T +G T LH + + +++LLR A ++ G T L I
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244
Query: 319 AQKLGYISVEESLGAA 334
A++L + EE L A
Sbjct: 245 AKRLKHEHCEELLTQA 260
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
+L++N N D + G T LH N +LL +A + + +SG TPL +A
Sbjct: 190 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 50 LHVVTELLSRGANVDSATKKGNTALHIASL---GEFLVPVWLG----DFKQGDGFTPLAV 102
LH+V L+ N+D T KG+TALH L E L + G + G TPL +
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244
Query: 103 AMQQGHDKVVAVL 115
A + H+ +L
Sbjct: 245 AKRLKHEHCEELL 257
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
T + I L++ + ++ G T LH +A+ +LL A + A + G T L
Sbjct: 183 TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 242
Query: 475 SIAQKLGYISVEESL 489
IA++L + EE L
Sbjct: 243 DIAKRLKHEHCEELL 257
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEG---VANILLDKRADVNFSAKSGLTPLHVASFM 256
+ N H PD T+ LH+A + + + L+ +++ G T LH
Sbjct: 162 LANGHEPDETA------LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215
Query: 257 GCMNIVIYLLQNDANPDIPTVRGETPLHLAAR 288
+ LL+ A+ +I GETPL +A R
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKR 247
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
G T L V +G I LL ANPD+ G +H AARA D ++ LL A V
Sbjct: 38 GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
+ EG+ L +A K G++ V E L S + R +G TA +A+ G V
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
GN L+ NPD+ ++G +H A+ G LL+ +ADVN G PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 251 HVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
H+A+ G + +V +L+++ A N +G+T LA + +++ ++ NGA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTALS 475
+D TLLE+ A N E G PLHL+A EGH + L++H A +V H +G TA
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142
Query: 476 IAQKLGYISV 485
+A+ G V
Sbjct: 143 LARLYGRNEV 152
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 46 KDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVW-LGDFK------QGDGFT 98
K G+ + LL RGAN D + GN +H A+ FL + L +F+ +G
Sbjct: 46 KLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 99 PLAVAMQQGHDKVVAVLLENDT-----RGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKV 153
PL +A ++GH +VV L+++ R G T +A G ++VV+++ N G
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 154 RL 155
L
Sbjct: 166 NL 167
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+IA LL GA P+ + G +H +A G D LLE ADV+ EG+ L +A
Sbjct: 51 EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
Query: 478 QKLGYISVEESL 489
K G++ V E L
Sbjct: 111 AKEGHLRVVEFL 122
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
G T L + N R+LLR GA D + R G+ + A + G++ ++L ++
Sbjct: 38 GRTALQVMKLGNPEIARRLLLR-GANPDLKDRTGNAVIHDAARAGFLDTLQTL-LEFQAD 95
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRV 398
+ EG+ L +A K G++ V E L T + + G ++ G T L R
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV-----GHRNHKGDTACDLARLYGRN 150
Query: 399 GVAELLLKNNA 409
V L+ N A
Sbjct: 151 EVVSLMQANGA 161
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ +V +++QN + D G T LH AA NQ D +++LL+ A V G TAL I
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 319 AQKLGYISVEESLGAAE 335
A+K + EE L A+
Sbjct: 266 ARKKHHKECEELLEQAQ 282
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 402 ELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA 461
EL+L +V + + +++ G +A++ G T LH +A D +LL+ A
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250
Query: 462 DVSHAAKEGHTALSIAQKLGYISVEESLK 490
V + G TAL IA+K + EE L+
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLE 279
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
++I+N + D + G T LH A+ Y +LL RA V ++G T L +A
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKS-----GLTPLHVASFMGCMNIVIYLLQ 267
G T LHIA+ Y N A +L++ ++ F + G T LH+A +N+V LL
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 268 NDAN-------------PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHT 314
A+ P GE PL AA +I+R+L+ +GA + A+ G+T
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Query: 315 ALSI 318
L I
Sbjct: 157 VLHI 160
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQ 394
E ++ +RG G TAL IA + L L+ E ++ G T LH+
Sbjct: 26 EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE-GQTALHIAVI 84
Query: 395 EDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSA 454
V + LL A V + + +P+ G PL +A G ++
Sbjct: 85 NQNVNLVRALLARGASVSARATGSV------FHYRPHNLIYYGEHPLSFAACVGSEEIVR 138
Query: 455 MLLEHGADVSHAAKEGHTALSI 476
+L+EHGAD+ G+T L I
Sbjct: 139 LLIEHGADIRAQDSLGNTVLHI 160
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ +V +++QN + D G T LH AA NQ D +++LL+ A V G TAL I
Sbjct: 187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246
Query: 319 AQKLGYISVEESLGAAE 335
A+K + EE L A+
Sbjct: 247 ARKKHHKECEELLEQAQ 263
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 402 ELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA 461
EL+L +V + + +++ G +A++ G T LH +A D +LL+ A
Sbjct: 172 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 231
Query: 462 DVSHAAKEGHTALSIAQKLGYISVEESLK 490
V + G TAL IA+K + EE L+
Sbjct: 232 LVGTVNEAGETALDIARKKHHKECEELLE 260
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
++I+N + D + G T LH A+ Y +LL RA V ++G T L +A
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 185 VLSSTTGNAATGGYLI--KNEHNP----------DVTSKSGFTPLHIASHYGNEGVANIL 232
++ S T YLI K+ H+P DV S+ TP A+ +E + L
Sbjct: 6 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE-TPWWTAARKADEQALSQL 64
Query: 233 LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE-TPLHLAARANQ 291
L+ R DV+ ++G T L + +G V L + A+ D +RG T LH+AA +
Sbjct: 65 LEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123
Query: 292 TDIIRILLRNGAQVDARAREGHTALSIAQKL 322
+++ L+ GA ++ G TAL +A+++
Sbjct: 124 PEVVEALVELGADIEVEDERGLTALELAREI 154
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 437 GFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKL 480
G T LH++A ++ L+E GAD+ + G TAL +A+++
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA A+ G TPLHL+A GH ++ +LLE GADV+ K G TA I+
Sbjct: 20 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Query: 478 QKLGYISVEESLK 490
G + E L+
Sbjct: 80 IDNGNEDLAEILQ 92
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 262 VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
V L+ N A+ G TPLHLAAR +++++LL GA V+A+ + G TA I+
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V A+ + G T L +A + G++ V + L A + + + +
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDKF 71
Query: 346 GHTALSIAQKLGYISVEESLK 366
G TA I+ G + E L+
Sbjct: 72 GKTAFDISIDNGNEDLAEILQ 92
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ +++GHL VV LL GA+V++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 68 KKGNTALHIA 77
K G TA I+
Sbjct: 70 KFGKTAFDIS 79
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADV K+G TPLH+A+ G + +V LL+ A+ + G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 280 ETPLHLAARANQTDIIRIL 298
+T ++ D+ IL
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
K KNG TPLHL A+ + V +L LLE GA NA+ G T
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKL-------------------LLEAGADVNAQDKFGKTA 75
Query: 441 LHLSASEGHADMSAML 456
+S G+ D++ +L
Sbjct: 76 FDISIDNGNEDLAEIL 91
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
L+ N + K+G TPLH+A+ G+ V +LL+ ADVN K G T ++
Sbjct: 25 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDIS 79
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 103 AMQQGHDKVVAVLLENDT----RGKDGFTPLAVAMQQGHDKVVAVLLE 146
A + G D V +L+ N + K+G TPL +A + GH +VV +LLE
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 92 KQGDGFTPLAVAMQQGHDKVVAVLLE--NDTRGKDGF--TPLAVAMQQGHDKVVAVL 144
K +G TPL +A + GH +VV +LLE D +D F T +++ G++ + +L
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
D L+ GA A+ G TPLHL+A GH ++ +LLE GADV K G TA I+
Sbjct: 38 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Query: 478 QKLGYISVEESLK 490
G + E L+
Sbjct: 98 IDNGNEDLAEILQ 110
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 262 VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
V L+ N A+ G TPLHLAAR +++++LL GA V A+ + G TA I+
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE 345
AARA Q D +RIL+ NGA V A+ + G T L +A + G++ V + L A + + + +
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKF 89
Query: 346 GHTALSIAQKLGYISVEESLK 366
G TA I+ G + E L+
Sbjct: 90 GKTAFDISIDNGNEDLAEILQ 110
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIXXXXXXXXXXXXXXSKDGHLHVVTELLSRGANVDSAT 67
L AARAG D++ + N D+ +++GHL VV LL GA+V +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 68 KKGNTALHIA 77
K G TA I+
Sbjct: 88 KFGKTAFDIS 97
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
A+ G + IL+ ADV K+G TPLH+A+ G + +V LL+ A+ G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 280 ETPLHLAARANQTDIIRIL 298
+T ++ D+ IL
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
L+ N + K+G TPLH+A+ G+ V +LL+ ADV K G T ++
Sbjct: 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 19/76 (25%)
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
K KNG TPLHL A+ + V +L LLE GA A+ G T
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKL-------------------LLEAGADVXAQDKFGKTA 93
Query: 441 LHLSASEGHADMSAML 456
+S G+ D++ +L
Sbjct: 94 FDISIDNGNEDLAEIL 109
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 103 AMQQGHDKVVAVLLENDT----RGKDGFTPLAVAMQQGHDKVVAVLLE 146
A + G D V +L+ N + K+G TPL +A + GH +VV +LLE
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 92 KQGDGFTPLAVAMQQGHDKVVAVLLE--NDTRGKDGF--TPLAVAMQQGHDKVVAVL 144
K +G TPL +A + GH +VV +LLE D +D F T +++ G++ + +L
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 185 VLSSTTGNAATGGYLI--KNEHNPDVTSKSGF---------TPLHIASHYGNEGVANILL 233
++ S T YLI K+ H+P S TP A+ +E + LL
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL 64
Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE-TPLHLAARANQT 292
+ R DV+ ++G T L + +G V L + A+ D +RG T LH+AA +
Sbjct: 65 EDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123
Query: 293 DIIRILLRNGAQVDARAREGHTALSIAQKL 322
+++ L+ GA ++ G TAL +A+++
Sbjct: 124 EVVEALVELGADIEVEDERGLTALELAREI 153
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 437 GFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKL 480
G T LH++A ++ L+E GAD+ + G TAL +A+++
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 214 FTPLHIA-----SHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
F PL +A S G + ++ + D + G+T LH A G IV +L+Q
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR-EGHTALSIAQKL--GYI 325
N + G TPLH AA N + + L+ +GA V A + TA +++ GY
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152
Query: 326 SVEESL-GAAERSQLKKRG 343
+ L G E+ + +G
Sbjct: 153 QCSQFLYGVQEKMGIMNKG 171
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV-SHAAKEGHTALSI 476
+I L+++G NA G+TPLH +AS + + L+E GA V + + TA
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143
Query: 477 AQKL--GYISVEESLKGVTETL-IIAKG 501
+++ GY + L GV E + I+ KG
Sbjct: 144 CEEMEEGYTQCSQFLYGVQEKMGIMNKG 171
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 187 SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSG 246
SS G +I +P + + G T LH A G+ + L+ +VN + G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 247 LTPLHVASFMGCMNIVIYLLQNDA 270
TPLH A+ + + +L+++ A
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGA 127
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 416 KMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALS 475
+ D+ ++ P+ + G T LH + GH ++ L++ G +V+ A +G T L
Sbjct: 49 EFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 476 IAQKLGYISVEESL 489
A + V + L
Sbjct: 109 CAASCNNVQVCKFL 122
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA-ERSQLKK 341
+H+AAR QTD +R L+ G + R G TAL +A K G + + L + E L
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83
Query: 342 RGREGHTALSIAQKLGYISVEESLK---GVTETLIIAKGDGE--------KHKNGLTPLH 390
+ H A+ + +++ E K E+L+ + E KH G T LH
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTALH 143
Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPL 441
C VG+ P ++ L++ GA P A+ A TPL
Sbjct: 144 WC-----VGLG------------PEYLEXIKILVQLGASPTAKDKADETPL 177
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 441 LHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAK 500
+H++A +G D L+E G + + G TAL +A K G + + L V E +
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83
Query: 501 GDGEKHKVV 509
G H V
Sbjct: 84 GQKPIHLAV 92
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 214 FTPLHI---ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270
F PL + +S G + ++ + D + G+T LH A G IV +L+Q
Sbjct: 35 FNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 271 NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR-EGHTALSIAQKL--GYISV 327
N + G TPLH AA N + + L+ +GA V A + TA +++ GY
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154
Query: 328 EESL-GAAERSQLKKRG 343
+ L G E+ + +G
Sbjct: 155 SQFLYGVQEKMGIMNKG 171
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV-SHAAKEGHTALSI 476
+I L+++G NA G+TPLH +AS + + L+E GA V + + TA
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143
Query: 477 AQKL--GYISVEESLKGVTETL-IIAKG 501
+++ GY + L GV E + I+ KG
Sbjct: 144 CEEMEEGYTQCSQFLYGVQEKMGIMNKG 171
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 180 VDPASVL--SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
+P ++L SS G +I +P + + G T LH A G+ + L+
Sbjct: 35 FNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270
+VN + G TPLH A+ + + +L+++ A
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 101/270 (37%), Gaps = 44/270 (16%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYLL 266
++ G T LH+A + +E + LL A ++ G T LH+A+ +G + V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILL-------RNGAQV------DARAREGH 313
A + G T LHLA R +LL R+ + D H
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 314 TALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLI 373
++ + + EE R QL+ +GHT L +++V + L
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL-------HVAVIHKDAEMVRLLR 178
Query: 374 IAKGDGEKHKN--GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPN 431
A D K + G TPLHL + V ELLLK GA P
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-------------------GADPT 219
Query: 432 AESVAGFTPLHLSASEGHADMSAMLLEHGA 461
A G TPL + + ++ +L HGA
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 194 ATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL-LDKRADVNFSAKSGLTPLHV 252
A+ YL +++ D T + P + S E D R + G TPLHV
Sbjct: 108 ASDTYLTQSQ---DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164
Query: 253 ASFMGCMNIVIYLLQNDANPDI----PTVRGETPLHLAARANQTDIIRILLRNGAQVDAR 308
A +V L DA D+ PT G TPLHLA A ++ +LL+ GA AR
Sbjct: 165 AVIHKDAEMVRLL--RDAGADLNKPEPTC-GRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 309 AREGHTALSIA 319
G T L A
Sbjct: 222 MYGGRTPLGSA 232
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 95/235 (40%), Gaps = 31/235 (13%)
Query: 276 TVRGETPLHLAARANQTDIIRILLRNGA---QVDARAREGHTALSIAQKLGYISVEESLG 332
T G+T LHLA + LL A +D + G TAL +A LG S E L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNG----LTP 388
AA L R GHTAL +A ++ + T ++ + ++ LT
Sbjct: 66 AAGAGVLVAE-RGGHTALHLACRV---------RAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
C + A + + N + + + + LE AE+ G TPLH++
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE------AENYDGHTPLHVAVIHK 169
Query: 449 HADMSAMLLEHGADVSHAAKE-GHTALSIAQKLGYISVEESLKGVTETLIIAKGD 502
A+M +L + GAD++ G T L +++VE V E L+ A D
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPL-------HLAVEAQAASVLELLLKAGAD 217
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 90/252 (35%), Gaps = 38/252 (15%)
Query: 241 FSAKSGLTPLHVASFMGCMNIVIYLLQNDANP---DIPTVRGETPLHLAARANQTDIIRI 297
+ + G T LH+A + +LL A D+ G+T LHLAA + +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63
Query: 298 LLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE------------ 345
L GA V R GHTAL +A ++ + L S +
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
H ++ + + EE + A+ + +G TPLH+ + LL
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-----NYDGHTPLHVAVIHKDAEMVRLLR 178
Query: 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
A ++ P E G TPLHL+ A + +LL+ GAD +
Sbjct: 179 DAGADLNKP------------------EPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Query: 466 AAKEGHTALSIA 477
G T L A
Sbjct: 221 RMYGGRTPLGSA 232
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 101/270 (37%), Gaps = 44/270 (16%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYLL 266
++ G T LH+A + +E + LL A ++ G T LH+A+ +G + V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILL-------RNGAQV------DARAREGH 313
A + G T LHLA R +LL R+ + D H
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 314 TALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLI 373
++ + + EE R QL+ +GHT L +++V + L
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL-------HVAVIHKDAEMVRLLR 178
Query: 374 IAKGDGEKHKN--GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPN 431
A D K + G TPLHL + V ELLLK GA P
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-------------------GADPT 219
Query: 432 AESVAGFTPLHLSASEGHADMSAMLLEHGA 461
A G TPL + + ++ +L HGA
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 194 ATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL-LDKRADVNFSAKSGLTPLHV 252
A+ YL +++ D T + P + S E D R + G TPLHV
Sbjct: 108 ASDTYLTQSQ---DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164
Query: 253 ASFMGCMNIVIYLLQNDANPDI----PTVRGETPLHLAARANQTDIIRILLRNGAQVDAR 308
A +V L DA D+ PT G TPLHLA A ++ +LL+ GA AR
Sbjct: 165 AVIHKDAEMVRLL--RDAGADLNKPEPTC-GRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 309 AREGHTALSIA 319
G T L A
Sbjct: 222 MYGGRTPLGSA 232
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 95/235 (40%), Gaps = 31/235 (13%)
Query: 276 TVRGETPLHLAARANQTDIIRILLRNGA---QVDARAREGHTALSIAQKLGYISVEESLG 332
T G+T LHLA + LL A +D + G TAL +A LG S E L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNG----LTP 388
AA L R GHTAL +A ++ + T ++ + ++ LT
Sbjct: 66 AAGAGVLVAE-RGGHTALHLACRV---------RAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
C + A + + N + + + + LE AE+ G TPLH++
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE------AENYDGHTPLHVAVIHK 169
Query: 449 HADMSAMLLEHGADVSHAAKE-GHTALSIAQKLGYISVEESLKGVTETLIIAKGD 502
A+M +L + GAD++ G T L +++VE V E L+ A D
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPL-------HLAVEAQAASVLELLLKAGAD 217
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 90/252 (35%), Gaps = 38/252 (15%)
Query: 241 FSAKSGLTPLHVASFMGCMNIVIYLLQNDANP---DIPTVRGETPLHLAARANQTDIIRI 297
+ + G T LH+A + +LL A D+ G+T LHLAA + +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63
Query: 298 LLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGRE------------ 345
L GA V R GHTAL +A ++ + L S +
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
H ++ + + EE + A+ + +G TPLH+ + LL
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-----NYDGHTPLHVAVIHKDAEMVRLLR 178
Query: 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
A ++ P E G TPLHL+ A + +LL+ GAD +
Sbjct: 179 DAGADLNKP------------------EPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Query: 466 AAKEGHTALSIA 477
G T L A
Sbjct: 221 RMYGGRTPLGSA 232
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
K DVN + + G PLH A+ G + I+ +LL A+ + P TPL A
Sbjct: 24 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 83
Query: 295 IRILLRNGAQVDARAREGHTAL 316
+++LL GA + +G TAL
Sbjct: 84 VKLLLSKGADKTVKGPDGLTAL 105
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
Y+ K E + + T + G PLH A+ G + LL K AD+N K +TPL A + G
Sbjct: 21 YVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 79
Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
++ V LL A+ TV+G L A A I+ LL+
Sbjct: 80 HVSCVKLLLSKGAD---KTVKGPDGL-TALEATDNQAIKALLQ 118
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 19/90 (21%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
G PLH A ++ + E LL A ++ P K I TPL +
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI-------------------TPLLSA 75
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
EGH +LL GAD + +G TAL
Sbjct: 76 VYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 46 KDGHLHVVTELLSRGANVDSATKKGNTALHIAS-LGEFLVPVWL----GDFKQGDG--FT 98
K+G L V + +++G +V+ + G LH A+ G+ + +L D D T
Sbjct: 11 KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT 70
Query: 99 PLAVAMQQGHDKVVAVLL----ENDTRGKDGFTPLAVAMQQ 135
PL A+ +GH V +LL + +G DG T L Q
Sbjct: 71 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQ 111
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
+ G+T LH A +IV +L+ AN + P G TPLH AA N T I L+++GA
Sbjct: 52 EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Query: 304 QVDARA-REGHTALSIAQ--KLGYISVEESLGAAERS 337
+ A +G TA + GY L E+S
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
+K ++P ++ G T LH A N + + L+ A+VN G TPLH A+
Sbjct: 41 VKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT 100
Query: 260 NIVIYLLQNDA 270
I + L+Q+ A
Sbjct: 101 VICMALVQHGA 111
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 419 IATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV-SHAAKEGHTALSIA 477
I L+ GA N+ G+TPLH +AS + L++HGA + + +G TA
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC 128
Query: 478 Q--KLGYISVEESLKGVTETL 496
+ GY L V +++
Sbjct: 129 DPYREGYADCATYLADVEQSM 149
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 237 ADVNF--SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
ADVN+ + TPL A+ + +LLQN AN + G PLH A T +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 295 IRILLRNGAQVDARAREGHTALSIAQK 321
+ L+ GA + AR EG L+IA +
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
LL+ GA N AG PLH + GH ++ + L+ GAD+ EG L+IA +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPL A+ + LL A+VN + +G PLH A+ +G + L+ A+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH----TALSIAQKLGYISVEES 330
G PL +A DI+ LLR +A A +G T L I + ++ ++
Sbjct: 297 RDSEGRDPLTIAMETANADIV-TLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDP 355
Query: 331 LGAAERSQLKKRGREGHT 348
+L +R + HT
Sbjct: 356 ------EKLSRRSHDLHT 367
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
+L++N N + +G PLH A+ G+ G+A + L + AD+ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 258 CMNIVIYL 265
+IV L
Sbjct: 313 NADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 237 ADVNF--SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
ADVN+ + TPL A+ + +LLQN AN + G PLH A T +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 295 IRILLRNGAQVDARAREGHTALSIAQK 321
+ L+ GA + AR EG L+IA +
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
LL+ GA N AG PLH + GH ++ + L+ GAD+ EG L+IA +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPL A+ + LL A+VN + +G PLH A+ +G + L+ A+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH----TALSIAQKLGYISVEES 330
G PL +A DI+ LLR +A A +G T L I + ++ ++
Sbjct: 297 RDSEGRDPLTIAMETANADIV-TLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDP 355
Query: 331 LGAAERSQLKKRGREGHT 348
+L +R + HT
Sbjct: 356 ------EKLSRRSHDLHT 367
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
+L++N N + +G PLH A+ G+ G+A + L + AD+ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 258 CMNIVIYL 265
+IV L
Sbjct: 313 NADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 237 ADVNF--SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
ADVN+ + TPL A+ + +LLQN AN + G PLH A T +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283
Query: 295 IRILLRNGAQVDARAREGHTALSIAQK 321
+ L+ GA + AR EG L+IA +
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
LL+ GA N AG PLH + GH ++ + L+ GAD+ EG L+IA +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPL A+ + LL A+VN + +G PLH A+ +G + L+ A+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH----TALSIAQKLGYISVEES 330
G PL +A DI+ LLR +A A +G T L I + ++ ++
Sbjct: 297 RDSEGRDPLTIAMETANADIV-TLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDP 355
Query: 331 LGAAERSQLKKRGREGHT 348
+L +R + HT
Sbjct: 356 ------EKLSRRSHDLHT 367
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
+L++N N + +G PLH A+ G+ G+A + L + AD+ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 258 CMNIVIYL 265
+IV L
Sbjct: 313 NADIVTLL 320
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
K DVN + + G PLH A+ G + I+ +LL A+ + P TPL A
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 88
Query: 295 IRILLRNGAQVDARAREGHTAL 316
+++LL GA + +G TA
Sbjct: 89 VKLLLSKGADKTVKGPDGLTAF 110
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
Y+ K E + + T + G PLH A+ G + LL K AD+N K +TPL A + G
Sbjct: 26 YVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84
Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLR 300
++ V LL A+ TV+G L A A I+ LL+
Sbjct: 85 HVSCVKLLLSKGAD---KTVKGPDGL-TAFEATDNQAIKALLQ 123
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 19/90 (21%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
G PLH A ++ + E LL A ++ P K I TPL +
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI-------------------TPLLSA 80
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
EGH +LL GAD + +G TA
Sbjct: 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 46 KDGHLHVVTELLSRGANVDSATKKGNTALHIAS-LGEFLVPVWL----GDFKQGDG--FT 98
K+G L V + +++G +V+ + G LH A+ G+ + +L D D T
Sbjct: 16 KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT 75
Query: 99 PLAVAMQQGHDKVVAVLL----ENDTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
PL A+ +GH V +LL + +G DG T A + ++ + LL+
Sbjct: 76 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT----AFEATDNQAIKALLQ 123
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET-PLHLAARAN 290
LL+ A+ N G P+ V MG + LL + A P+ T P+H AAR
Sbjct: 31 LLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG 89
Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
D + +L R GA++D R G + +A++LG+ V L AA
Sbjct: 90 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 419 IATTLLEYGAKPNAESVAGFT-PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+A LL +GA+PN A T P+H +A EG D +L GA + G + +A
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
Query: 478 QKLGYISVEESLK 490
++LG+ V L+
Sbjct: 119 EELGHRDVARYLR 131
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 416 KMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA 466
+++ LLE GA PNA + G P+ + G A ++ +LL HGA+ + A
Sbjct: 24 RVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCA 73
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 18/163 (11%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
++ +G T LH + + N V LLD V+ ++G +P+ + + +
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA------LATLK 158
Query: 266 LQNDANPDIPTVR-----------GETPLHLAARANQTDIIRILLRNGAQVDARAREGHT 314
Q+D + R G+T L LA + D+++ LL A V+ + +G T
Sbjct: 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST 218
Query: 315 ALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLG 357
AL A + G+ + L A + R+G TAL +A G
Sbjct: 219 ALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAG 261
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 394 QEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
+++R G + ++L A + T ++ L G S AG T L L+ S G D+
Sbjct: 140 KQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVV 199
Query: 454 AMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI-IAKGDGEKHKVVAPE 512
LL ADV+ +G TAL A + G+ + L V I + DG +VA +
Sbjct: 200 KALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD 259
Query: 513 IMQETFMS 520
Q S
Sbjct: 260 AGQSEIAS 267
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 57 LSRGANVDS-ATKKGNTALHIA-SLGEF-LVPVWLG-----DFKQGDGFTPLAVAMQQGH 108
L R N+++ A++ G TAL +A S G +V L + + DG T L A + GH
Sbjct: 169 LFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGH 228
Query: 109 DKVVAVLL-----ENDTRGKDGFTPLAVAMQQGHDKVVAVL 144
++ +LL + +DG T L VA+ G ++ ++L
Sbjct: 229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 52 VVTELLSRG-ANVDSATKKGNTALHIASLGEFL----VPVWLGDFKQGD--------GFT 98
VV +LL G VD + G + + + +L + L F+ G+ G T
Sbjct: 126 VVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT 185
Query: 99 PLAVAMQQGHDKVVAVLL----ENDTRGKDGFTPLAVAMQQGHDKVVAVLL 145
L +A+ G VV LL + + + DG T L A + GH ++ +LL
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET-PLHLAARAN 290
LL+ A N G P+ V MG + LL + A P+ T P+H AAR
Sbjct: 31 LLEAGALPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG 89
Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
D + +L R GA++D R G + +A++LG+ V L AA
Sbjct: 90 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 419 IATTLLEYGAKPNAESVAGFT-PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+A LL +GA+PN A T P+H +A EG D +L GA + G + +A
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
Query: 478 QKLGYISVEESLK 490
++LG+ V L+
Sbjct: 119 EELGHRDVARYLR 131
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET-PLHLAARAN 290
LL+ AD N + G P+ V MG + LL + A P+ T P+H AAR
Sbjct: 31 LLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG 89
Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
D + +L R GA++D G + +A++ G+ + L AA
Sbjct: 90 FLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
>pdb|3RPI|L Chain L, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
pdb|3RPI|B Chain B, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
Length = 206
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 33/193 (17%)
Query: 343 GREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAE 402
R G T Q GY++ + +G L+I DG K + G+ P + R G
Sbjct: 13 ARVGDTVTITCQANGYLNWYQQRRGKAPKLLIY--DGSKLERGV-PARFSGR--RWGQEY 67
Query: 403 LLLKNNAQVDTPTKMDIAT------------TLLEYGAKPNAESVAGFTPLHLSASEGHA 450
L NN Q + D+AT T L+ A SV F P G A
Sbjct: 68 NLTINNLQPE-----DVATYFCQVYEFIVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTA 122
Query: 451 DMSAMLLEH-------GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG 503
+ +L V +A + G++ S+ ++ ++S ++ TL ++K D
Sbjct: 123 SVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADY 178
Query: 504 EKHKVVAPEIMQE 516
EKHKV A E+ +
Sbjct: 179 EKHKVYACEVTHQ 191
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 37/167 (22%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
G T LHIA N + +L++ ADV +A + + P
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGD-----------------FFKKTKGRP 143
Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQ---VDARAREGHTALSIAQKLGYISVEE 329
GE PL LAA NQ I++ LL+N Q + AR G+T L ++ +V+
Sbjct: 144 GF--YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDN 201
Query: 330 S------------LGAAERSQLKKR---GREGHTALSIAQKLGYISV 361
+ LGA LK R+G T L++A G I V
Sbjct: 202 TKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 28/156 (17%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAR--------------EGHTALSIAQKLG 323
+G+T LH+A ++ +L+ NGA V A A G LS+A
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 324 YISVEESL--GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT----ETLIIA-- 375
+++ + L + + + + R G+T L ++ +V+ + K VT E LI+
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNT-KFVTSXYNEILILGAK 218
Query: 376 -----KGDGEKHKNGLTPLHLCAQEDRVGVAELLLK 406
K + ++ GLTPL L A ++GV +L+
Sbjct: 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254
>pdb|3NTC|L Chain L, Crystal Structure Of Kd-247 Fab, An Anti-V3 Antibody That
Inhibits Hiv-1 Entry
Length = 219
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ Q+ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 156 VDNALQSGNSQESVTQQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 205
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
+ E PLH AA T I++ILL +G +G+TAL A
Sbjct: 60 LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA 102
>pdb|3KR3|L Chain L, Crystal Structure Of Igf-Ii Antibody Complex
Length = 215
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ Q+ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTQE----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|3S34|L Chain L, Structure Of The 1121b Fab Fragment
pdb|3S36|L Chain L, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|L Chain L, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 214
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML-------LEHGADVSHAA 467
TK+DI T+ A SV F P G A + +L + V +A
Sbjct: 102 TKVDIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 154
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3QPX|L Chain L, Crystal Structure Of Fab C2507
Length = 213
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH-------GADVSHAA 467
TK+D+ T+ A SV F P G A + +L V +A
Sbjct: 101 TKLDLKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 153
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|1DFB|L Chain L, Structure Of A Human Monoclonal Antibody Fab Fragment
Against Gp41 Of Human Immunodeficiency Virus Type I
Length = 212
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML-------LEHGADVSHAA 467
TK+DI T+ A SV F P G A + +L + V +A
Sbjct: 100 TKVDIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 152
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 153 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 197
>pdb|4HFU|L Chain L, Crystal Structure Of Fab 8m2 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 215
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML-------LEHGADVSHAA 467
TK+DI T+ A SV F P G A + +L + V +A
Sbjct: 103 TKVDIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 155
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 156 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250
+G T L+IA+ GN + + LLD AD + KSGL P+
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
>pdb|4G5Z|L Chain L, Crystal Structure Of The Therapeutical Antibody Fragment
Of Canakinumab In Its Unbound State
pdb|4G6J|L Chain L, Crystal Structure Of Human Il-1beta In Complex With The
Therapeutic Antibody Binding Fragment Of Canakinumab
Length = 212
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-------DVSHAA 467
TK+DI T+ A SV F P G A + +L V +A
Sbjct: 102 TKVDIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 154
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2XRA|L Chain L, Crystal Structure Of The Hk20 Fab In Complex With A Gp41
Mimetic 5-Helix
Length = 215
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|2HH0|L Chain L, Structure Of An Anti-Prp Fab, P-Clone, In Complex With Its
Cognate Bovine Peptide Epitope
Length = 210
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|4HG4|K Chain K, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|M Chain M, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|O Chain O, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Q Chain Q, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|S Chain S, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|U Chain U, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|W Chain W, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Y Chain Y, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|ZZ Chain z, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 214
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1B2W|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
pdb|1T04|A Chain A, Three Dimensional Structure Of A Humanized Anti-Ifn-Gamma
Fab In C2 Space Group
pdb|1T04|C Chain C, Three Dimensional Structure Of A Humanized Anti-Ifn-Gamma
Fab In C2 Space Group
pdb|1T3F|A Chain A, Three Dimensional Structure Of A Humanized Anti-Ifn-Gamma
Fab (Huzaf) In P21 21 21 Space Group
Length = 214
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3GKW|L Chain L, Crystal Structure Of The Fab Fragment Of Nimotuzumab. An
Anti- Epidermal Growth Factor Receptor Antibody
Length = 219
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3U0W|L Chain L, Ad Related Murine Antibody Fragment
Length = 214
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1AXS|L Chain L, Mature Oxy-Cope Catalytic Antibody With Hapten
pdb|1AXS|A Chain A, Mature Oxy-Cope Catalytic Antibody With Hapten
Length = 211
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1D5B|A Chain A, Unliganded Mature Oxy-Cope Catalytic Antibody
pdb|1D5B|L Chain L, Unliganded Mature Oxy-Cope Catalytic Antibody
Length = 211
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1BBJ|L Chain L, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
pdb|1BBJ|A Chain A, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
Length = 211
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3HR5|L Chain L, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|A Chain A, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|P Chain P, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|Q Chain Q, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
Length = 219
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|2FGW|L Chain L, X-Ray Structures Of Fragments From Binding And Nonbinding
Versions Of A Humanized Anti-Cd18 Antibody: Structural
Indications Of The Key Role Of Vh Residues 59 To 65
Length = 214
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4G6A|D Chain D, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
pdb|4G6A|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
Length = 218
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|3QRG|L Chain L, Crystal Structure Of Antirsvf Fab B21m
Length = 218
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 377 GDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVA 436
G G LT L A++ V + ++++ TK++I T+ A SV
Sbjct: 68 GSGSGTDFTLTISSLQAEDVAVYYCQQIIEDPWTFGQGTKVEIKRTVA-------APSVF 120
Query: 437 GFTPLHLSASEGHADMSAML-------LEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
F P G A + +L + V +A + G++ S+ ++ ++S
Sbjct: 121 IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQ----DSKDST 176
Query: 490 KGVTETLIIAKGDGEKHKVVAPEIMQE 516
++ TL ++K D EKHKV A E+ +
Sbjct: 177 YSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|1AD9|L Chain L, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
pdb|1AD9|A Chain A, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
Length = 219
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3PNW|A Chain A, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|D Chain D, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|G Chain G, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|J Chain J, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|M Chain M, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|P Chain P, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|S Chain S, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|V Chain V, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
Length = 228
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 153 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 202
>pdb|1YY8|A Chain A, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY8|C Chain C, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY9|C Chain C, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 213
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3O2D|L Chain L, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 219
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|1CE1|L Chain L, 1.9a Structure Of The Therapeutic Antibody Campath-1h Fab
In Complex With A Synthetic Peptide Antigen
Length = 211
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1ZA6|A Chain A, The Structure Of An Antitumor Ch2-Domain-Deleted Humanized
Antibody
pdb|1ZA6|C Chain C, The Structure Of An Antitumor Ch2-Domain-Deleted Humanized
Antibody
pdb|1ZA6|E Chain E, The Structure Of An Antitumor Ch2-Domain-Deleted Humanized
Antibody
pdb|1ZA6|G Chain G, The Structure Of An Antitumor Ch2-Domain-Deleted Humanized
Antibody
Length = 220
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 156 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 205
>pdb|1IT9|L Chain L, Crystal Structure Of An Antigen-Binding Fragment From A
Humanized Version Of The Anti-Human Fas Antibody Hfe7a
Length = 214
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|3NZH|L Chain L, Crystal Structure Of Anti-Emmprin Antibody 5f6 Fab
Length = 214
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML-------LEHGADVSHAA 467
TK++I T+ A SV F P G A + +L + V +A
Sbjct: 102 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 154
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3MNV|A Chain A, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment
pdb|3MNV|C Chain C, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment
pdb|3MNW|A Chain A, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment With A Gp41 Mper-Derived Peptide In A
Helical Conformation
pdb|3MNZ|A Chain A, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment With A Gp41 Mper-Derived Peptide
Bearing Ala Substitutions In A Helical Conformation
pdb|3MO1|A Chain A, Crystal Structure Of The Non-Neutralizing Hiv Antibody
13h11 Fab Fragment
Length = 224
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 158 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 207
>pdb|1D5I|L Chain L, Unliganded Germline Precursor Of An Oxy-Cope Catalytic
Antibody
pdb|1D6V|L Chain L, Conformation Effects In Biological Catalysis Introduced By
Oxy-Cope Antibody Maturation
Length = 211
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4I77|L Chain L, Lebrikizumab Fab Bound To Il-13
Length = 218
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|2XA8|L Chain L, Crystal Structure Of The Fab Domain Of Omalizumab At 2.41a
Length = 218
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|1S3K|L Chain L, Crystal Structure Of A Humanized Fab (Hu3s193) In Complex
With The Lewis Y Tetrasaccharide
pdb|3EYV|L Chain L, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
pdb|3EYV|A Chain A, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
Length = 219
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|2QSC|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3-Fab F425-B4e8
In Complex With A V3-Peptide
Length = 215
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|1BEY|L Chain L, Antibody To Campath-1h Humanized Fab
Length = 214
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3IDX|L Chain L, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C222
pdb|3IDY|L Chain L, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
pdb|3IDY|C Chain C, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
Length = 215
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|1NGX|A Chain A, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
pdb|1NGX|L Chain L, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
Length = 213
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3QOS|L Chain L, Crystal Structure Of Human Germline Antibody 3-23B3
pdb|3QOS|A Chain A, Crystal Structure Of Human Germline Antibody 3-23B3
Length = 220
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 156 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 205
>pdb|2XTJ|C Chain C, The Crystal Structure Of Pcsk9 In Complex With 1d05 Fab
Length = 106
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETFMS 520
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ + S
Sbjct: 42 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 95
>pdb|1CLY|L Chain L, Igg Fab (Human Igg1, Kappa) Chimeric Fragment (Cbr96)
Complexed With Lewis Y Nonoate Methyl Ester
pdb|1UCB|L Chain L, Structure Of Uncomplexed Fab Compared To Complex (1cly,
1clz)
Length = 219
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-------DVSHAA 467
TK++I T+ A SV F P G A + +L V +A
Sbjct: 107 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 159
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 160 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|1BZ7|A Chain A, Fab Fragment From Murine Ascites
Length = 206
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3SE8|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
Length = 209
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 145 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 194
>pdb|4G6K|L Chain L, Crystal Structure Of The Therapeutic Antibody Binding
Fragment Of Gevokizumab In Its Unbound State
Length = 212
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3QOT|L Chain L, Crystal Structure Of Human Germline Antibody 1-69B3
Length = 221
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 157 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 206
>pdb|1B4J|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
Length = 214
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3FCT|A Chain A, Mature Metal Chelatase Catalytic Antibody With Hapten
pdb|3FCT|C Chain C, Mature Metal Chelatase Catalytic Antibody With Hapten
pdb|1NGW|L Chain L, Chimeric Affinity Matured Fab 7g12 Complexed With
Mesoporphyrin
pdb|1NGW|A Chain A, Chimeric Affinity Matured Fab 7g12 Complexed With
Mesoporphyrin
Length = 213
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4DGV|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, P2(1) Form
pdb|4DGY|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, C2 Form
Length = 213
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSNTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3MXV|L Chain L, Crystal Structure Of Fab Fragment Of Anti-shh 5e1 Chimera
pdb|3MXW|L Chain L, Crystal Structure Sonic Hedgehog Bound To The 5e1 Fab
Fragment
Length = 214
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3FO2|L Chain L, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)gln Mutant)
pdb|3FO2|A Chain A, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)gln Mutant)
Length = 219
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-------DVSHAA 467
TK++I T+ A SV F P G A + +L V +A
Sbjct: 107 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 159
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 160 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|1C5B|L Chain L, Decarboxylase Catalytic Antibody 21d8 Unliganded Form
pdb|1C5C|L Chain L, Decarboxylase Catalytic Antibody 21d8-Hapten Complex
Length = 214
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3D85|A Chain A, Crystal Structure Of Il-23 In Complex With Neutralizing
Fab
Length = 214
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1CZ8|L Chain L, Vascular Endothelial Growth Factor In Complex With An
Affinity Matured Antibody
pdb|1CZ8|X Chain X, Vascular Endothelial Growth Factor In Complex With An
Affinity Matured Antibody
Length = 213
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1TZI|A Chain A, Crystal Structure Of The Fab Yads2 Complexed With H-Vegf
Length = 214
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1BJ1|L Chain L, Vascular Endothelial Growth Factor In Complex With A
Neutralizing Antibody
pdb|1BJ1|J Chain J, Vascular Endothelial Growth Factor In Complex With A
Neutralizing Antibody
Length = 214
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2RCS|L Chain L, Immunoglobulin 48g7 Germline Fab-Affinity Maturation Of An
Esterolytic Antibody
Length = 214
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4FNL|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
pdb|4FNL|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
pdb|4FP8|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|N Chain N, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|O Chain O, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FQR|BB Chain b, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|DD Chain d, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|FF Chain f, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|HH Chain h, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|JJ Chain j, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|LL Chain l, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|NN Chain n, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|PP Chain p, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|RR Chain r, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|TT Chain t, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|VV Chain v, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|XX Chain x, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 214
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4D9R|L Chain L, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|D Chain D, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 214
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2XZA|L Chain L, Crystal Structure Of Recombinant A.17 Antibody Fab
Fragment
pdb|2XZC|L Chain L, Crystal Structure Of Phosphonate-Modified Recombinant A.17
Antibody Fab Fragment
Length = 216
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETFMS 520
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ + S
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205
>pdb|3QPQ|L Chain L, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|E Chain E, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|C Chain C, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|I Chain I, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3ULU|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 215
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|3NGB|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|C Chain C, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|F Chain F, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|K Chain K, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
Length = 210
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETFMS 520
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ + S
Sbjct: 146 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRS 199
>pdb|3GIZ|L Chain L, Crystal Structure Of The Fab Fragment Of Anti-Cd20
Antibody Ofatumumab
Length = 211
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1N7M|H Chain H, Germline 7g12 With N-Methylmesoporphyrin
pdb|1NGZ|A Chain A, Chimeric Germline Fab 7g12-Apo
Length = 213
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4G6M|L Chain L, Crystal Strucure Of Human Il-1beta In Complex With
Therapeutic Antibody Binding Fragment Of Gevokizumab
Length = 213
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1HKL|L Chain L, Free And Liganded Form Of An Esterolytic Catalytic
Antibody
Length = 214
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4DKE|L Chain L, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
pdb|4DKE|M Chain M, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
Length = 214
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4D9Q|D Chain D, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|L Chain L, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 213
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARA 309
RG + LH+A +++L+ NGA V ARA
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARA 125
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 279 GETPLHLAARANQTDIIRILLRN---GAQVDARAREGHTAL 316
GE PL LAA Q D++ LL N A + A +G+T L
Sbjct: 141 GELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVL 181
>pdb|1N8Z|A Chain A, Crystal Structure Of Extracellular Domain Of Human Her2
Complexed With Herceptin Fab
Length = 214
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3UTZ|A Chain A, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|D Chain D, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|E Chain E, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
Length = 219
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-------DVSHAA 467
TK++I T+ A SV F P G A + +L V +A
Sbjct: 107 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 159
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 160 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3SKJ|L Chain L, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
pdb|3SKJ|M Chain M, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
Length = 214
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3ZTJ|H Chain H, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|J Chain J, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|L Chain L, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTN|L Chain L, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H1 Influenza Haemagglutinin
Length = 218
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|3LEV|L Chain L, Hiv-1 Antibody 2f5 In Complex With Epitope Scaffold Es2
pdb|3MOA|L Chain L, Crystal Structure Of The Neutralizing Hiv Antibody 2f5 Fab
Fragment (Recombinantly Produced Fab) With 17 Aa Gp41
Mper-Derived Peptide
pdb|3MOB|L Chain L, Crystal Structure Of The Neutralizing Hiv Antibody 2f5 Fab
Fragment (Recombinantly Produced Fab) With 11 Aa Gp41
Mper-Derived Peptide
pdb|3MOD|L Chain L, Crystal Structure Of The Neutralizing Hiv Antibody 2f5 Fab
Fragment (Recombinantly Produced Igg) With 11 Aa Gp41
Mper-Derived Peptide
Length = 214
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3FO1|L Chain L, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)ala Mutant)
pdb|3FO1|A Chain A, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)ala Mutant)
Length = 219
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-------DVSHAA 467
TK++I T+ A SV F P G A + +L V +A
Sbjct: 107 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 159
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 160 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3INU|L Chain L, Crystal Structure Of An Unbound Kz52 Neutralizing
Anti-Ebolavirus Antibody.
pdb|3INU|N Chain N, Crystal Structure Of An Unbound Kz52 Neutralizing
Anti-Ebolavirus Antibody
Length = 217
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 156 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 205
>pdb|1TJG|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv-1
Antibody 2f5 In Complex With A Gp41 7mer Epitope
pdb|1TJH|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv-1
Antibody 2f5 In Complex With A Gp41 11mer Epitope
pdb|1TJI|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv-1
Antibody 2f5 In Complex With A Gp41 17mer Epitope
Length = 214
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3CSY|B Chain B, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|D Chain D, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|F Chain F, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|H Chain H, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
Length = 217
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 156 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 205
>pdb|1NGY|A Chain A, Chimeric Mature Fab 7g12-Apo
Length = 213
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1G9M|L Chain L, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1G9N|L Chain L, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 214
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQKS----KDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|3FO0|L Chain L, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Wild-Type)
Length = 219
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-------DVSHAA 467
TK++I T+ A SV F P G A + +L V +A
Sbjct: 107 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 159
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 160 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3C08|L Chain L, Crystal Structure The Fab Fragment Of MatuzumabEMD72000
(FAB72000)
pdb|3C09|L Chain L, Crystal Structure The Fab Fragment Of Matuzumab (Fab72000)
In Complex With Domain Iii Of The Extracellular Region
Of Egfr
pdb|3C09|B Chain B, Crystal Structure The Fab Fragment Of Matuzumab (Fab72000)
In Complex With Domain Iii Of The Extracellular Region
Of Egfr
Length = 212
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3U0T|C Chain C, Fab-Antibody Complex
pdb|3U0T|A Chain A, Fab-Antibody Complex
Length = 219
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3I9G|L Chain L, Crystal Structure Of The Lt1009 (Sonepcizumab) Antibody
Fab Fragment In Complex With Sphingosine-1-Phosphate
Length = 213
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-------DVSHAA 467
TK++I T+ A SV F P G A + +L V +A
Sbjct: 102 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 154
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3DVG|A Chain A, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
Length = 217
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 153 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 202
>pdb|1AJ7|L Chain L, Immunoglobulin 48g7 Germline Fab Antibody Complexed With
Hapten 5-(Para-Nitrophenyl Phosphonate)-Pentanoic Acid.
Affinity Maturation Of An Esterolytic Antibody
Length = 214
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1B6D|A Chain A, Bence Jones Protein Del: An Entire Immunoglobulin Kappa
Light-Chain Dimer
pdb|1B6D|B Chain B, Bence Jones Protein Del: An Entire Immunoglobulin Kappa
Light-Chain Dimer
Length = 212
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1UM4|L Chain L, Catalytic Antibody 21h3 With Hapten
pdb|1UM5|L Chain L, Catalytic Antibody 21h3 With Alcohol Substrate
pdb|1UM6|L Chain L, Catalytic Antibody 21h3
Length = 219
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|1RZ8|A Chain A, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 17b
pdb|1RZ8|C Chain C, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 17b
pdb|1RZJ|L Chain L, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|L Chain L, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1YYL|L Chain L, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYL|Q Chain Q, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYM|L Chain L, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|1YYM|Q Chain Q, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|L Chain L, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|Q Chain Q, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|L Chain L, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|Q Chain Q, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2NXY|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein(S334a) Complexed With
Cd4 And Antibody 17b
pdb|2NXZ|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (t257s, S334a, S375w)
Complexed With Cd4 And Antibody 17b
pdb|2NY0|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (M95w, W96c, T257s,
V275c, S334a, S375w, A433m) Complexed With Cd4 And
Antibody 17b
pdb|2NY1|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (I109c, T257s, S334a,
S375w, Q428c) Complexed With Cd4 And Antibody 17b
pdb|2NY2|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (T123c, T257s, S334a,
S375w, G431c) Complexed With Cd4 And Antibody 17b
pdb|2NY3|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E267c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY4|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E268c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY5|L Chain L, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T257s, V275c, S334a, S375w, Q428c, A433m) Complexed With
Cd4 And Antibody 17b
pdb|2NY6|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
Length = 214
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|3DVN|A Chain A, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|L Chain L, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 217
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 153 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 202
>pdb|1U6A|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv Fab
F105
pdb|3HI1|L Chain L, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
pdb|3HI1|A Chain A, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
Length = 215
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|1RZI|A Chain A, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|C Chain C, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|E Chain E, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|G Chain G, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|I Chain I, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|K Chain K, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|M Chain M, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|O Chain O, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
Length = 212
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3IU4|L Chain L, Anti Neugcgm3 Ganglioside Chimeric Antibody Chp3
Length = 213
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2V7N|A Chain A, Unusual Twinning In Crystals Of The Cits Binding Antibody
Fab Fragment F3p4
pdb|2V7N|C Chain C, Unusual Twinning In Crystals Of The Cits Binding Antibody
Fab Fragment F3p4
pdb|2V7N|E Chain E, Unusual Twinning In Crystals Of The Cits Binding Antibody
Fab Fragment F3p4
pdb|2V7N|G Chain G, Unusual Twinning In Crystals Of The Cits Binding Antibody
Fab Fragment F3p4
Length = 215
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|1ZA3|A Chain A, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
pdb|1ZA3|L Chain L, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
Length = 213
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|1HEZ|A Chain A, Antibody-Antigen Complex
pdb|1HEZ|C Chain C, Antibody-Antigen Complex
Length = 214
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3KYK|L Chain L, Crystal Structure Of Li33 Igg1 Fab
pdb|3KYM|A Chain A, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|C Chain C, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|E Chain E, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|G Chain G, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|I Chain I, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|K Chain K, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|M Chain M, Crystal Structure Of Li33 Igg2 Di-Fab
pdb|3KYM|O Chain O, Crystal Structure Of Li33 Igg2 Di-Fab
Length = 214
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3L95|A Chain A, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
pdb|3L95|L Chain L, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
Length = 214
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1GAF|L Chain L, 48g7 Hybridoma Line Fab Complexed With Hapten 5-(Para-
Nitrophenyl Phosphonate)-Pentanoic Acid
Length = 214
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1MHP|L Chain L, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
pdb|1MHP|Y Chain Y, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
Length = 212
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 148 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 197
>pdb|1DEE|A Chain A, Crystal Structure At 2.7a Resolution Of A Complex Between
A Staphylococcus Aureus Domain And A Fab Fragment Of A
Human Igm Antibody
pdb|1DEE|C Chain C, Crystal Structure At 2.7a Resolution Of A Complex Between
A Staphylococcus Aureus Domain And A Fab Fragment Of A
Human Igm Antibody
pdb|1DEE|E Chain E, Crystal Structure At 2.7a Resolution Of A Complex Between
A Staphylococcus Aureus Domain And A Fab Fragment Of A
Human Igm Antibody
Length = 214
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3SQO|L Chain L, Pcsk9 J16 Fab Complex
Length = 214
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3U7W|L Chain L, Crystal Structure Of Nih45-46 Fab
pdb|3U7Y|L Chain L, Structure Of Nih45-46 Fab In Complex With Gp120 Of 93th057
Hiv
Length = 210
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 146 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 195
>pdb|3HC0|L Chain L, Bha10 Igg1 Wild-Type Fab - Antibody Directed At Human Ltbr
pdb|3HC0|B Chain B, Bha10 Igg1 Wild-Type Fab - Antibody Directed At Human Ltbr
Length = 213
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2O5X|L Chain L, Crystal Structure Of 1e9 Leuh47trpARGH100TRP, AN
ENGINEERED DIELS- Alderase Fab With Nm Steroid-Binding
Affinity
pdb|2O5Y|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
PROGESTERONE Complex
pdb|2O5Z|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
5-Beta- Androstane-3,17-Dione Complex
Length = 219
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3HI5|L Chain L, Crystal Structure Of Fab Fragment Of Al-57
pdb|3HI6|L Chain L, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
pdb|3HI6|Y Chain Y, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
Length = 212
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2CMR|L Chain L, Crystal Structure Of The Hiv-1 Neutralizing Antibody D5
Fab Bound To The Gp41 Inner-Core Mimetic 5-Helix
Length = 208
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2AJ3|A Chain A, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
pdb|2AJ3|C Chain C, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
pdb|2AJ3|E Chain E, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
Length = 213
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML-------LEHGADVSHAA 467
TK++I+ T+ A SV F P G A + +L + V +A
Sbjct: 101 TKLEISRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 153
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 QSGNSQESVTEQDN----KDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3TCL|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Antibody Ch04
pdb|3TCL|B Chain B, Crystal Structure Of Hiv-1 Neutralizing Antibody Ch04
Length = 215
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|3O2V|L Chain L, Crystal Structure Of 1e9 Phel89serLEUH47TRPMETH100BPHE, AN
Engineered Diels-Alderase Fab With Modified Specificity
And Catalytic Activity
pdb|3O2W|L Chain L, Crystal Structure Of The 1e9 Phel89serLEUH47TRPMETH100BPHE
FAB IN Complex With A 39a11 Transition State Analog
Length = 219
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3FZU|L Chain L, Igg1 Fab Characterized By HD EXCHANGE
pdb|3FZU|D Chain D, Igg1 Fab Characterized By HD EXCHANGE
Length = 214
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1GC1|L Chain L, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
Length = 213
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|1JPS|L Chain L, Crystal Structure Of Tissue Factor In Complex With
Humanized Fab D3h44
pdb|1JPT|L Chain L, Crystal Structure Of Fab D3h44
Length = 214
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1IQD|A Chain A, Human Factor Viii C2 Domain Complexed To Human Monoclonal
Bo2c11 Fab
Length = 211
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3SOB|L Chain L, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 237
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 173 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 222
>pdb|3NFP|B Chain B, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Daclizumab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3NFP|L Chain L, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Daclizumab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3NFS|L Chain L, Crystal Structure The Fab Fragment Of Therapeutic Antibody
Daclizumab
Length = 212
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3HC3|L Chain L, Bha10 Igg1 Fab Double Mutant Variant - Antibody Directed
At Human Ltbr
pdb|3HC4|L Chain L, Bha10 Igg1 Fab Quadruple Mutant Variant - Antibody
Directed At Human Ltbr
Length = 213
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2VXQ|L Chain L, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 214
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3R1G|L Chain L, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 214
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3HMW|L Chain L, Crystal Structure Of Ustekinumab Fab
pdb|3HMX|L Chain L, Crystal Structure Of Ustekinumab FabIL-12 Complex
Length = 214
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3IVK|L Chain L, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
pdb|3IVK|B Chain B, Crystal Structure Of The Catalytic Core Of An Rna
Polymerase Ribozyme Complexed With An Antigen Binding
Antibody Fragment
Length = 213
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|2WUB|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|Q Chain Q, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 214
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2HWZ|L Chain L, Fab Fragment Of Humanized Anti-viral Antibody Medi-493
(synagis Tm)
Length = 213
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|2VXV|L Chain L, Crystal Structure Of Human Igg Abt-325 Fab Fragment
Length = 214
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|3EYQ|C Chain C, Crystal Structure Of Mj5 Fab, A Germline Antibody Variant
Of Anti-Human Cytomegalovirus Antibody 8f9
Length = 216
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|3EO0|A Chain A, Structure Of The Transforming Growth Factor-Beta
Neutralizing Antibody Gc-1008
pdb|3EO0|C Chain C, Structure Of The Transforming Growth Factor-Beta
Neutralizing Antibody Gc-1008
pdb|3EO1|A Chain A, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|D Chain D, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|G Chain G, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|J Chain J, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
Length = 215
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|1VGE|L Chain L, Tr1.9 Fab Fragment Of A Human Igg1 Kappa Autoantibody
pdb|1IGA|C Chain C, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|1IGA|D Chain D, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|1R70|A Chain A, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1R70|C Chain C, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|2ESG|L Chain L, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2ESG|M Chain M, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2QTJ|L Chain L, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|M Chain M, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|N Chain N, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|O Chain O, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|3CHN|L Chain L, Solution Structure Of Human Secretory Iga1
pdb|3CHN|M Chain M, Solution Structure Of Human Secretory Iga1
pdb|3CHN|N Chain N, Solution Structure Of Human Secretory Iga1
pdb|3CHN|O Chain O, Solution Structure Of Human Secretory Iga1
pdb|3CM9|L Chain L, Solution Structure Of Human Siga2
pdb|3CM9|M Chain M, Solution Structure Of Human Siga2
pdb|3CM9|N Chain N, Solution Structure Of Human Siga2
pdb|3CM9|O Chain O, Solution Structure Of Human Siga2
Length = 214
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1I7Z|A Chain A, Antibody Gnc92h2 Bound To Ligand
pdb|1I7Z|C Chain C, Antibody Gnc92h2 Bound To Ligand
Length = 219
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3NPS|C Chain C, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
Length = 211
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3MCL|L Chain L, Anti-Beta-Amyloid Antibody C706 Fab In Space Group P21
Length = 212
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 148 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 197
>pdb|3L5W|L Chain L, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5W|A Chain A, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L7E|L Chain L, Crystal Structure Of Anti-Il-13 Antibody C836
pdb|3L7E|A Chain A, Crystal Structure Of Anti-Il-13 Antibody C836
Length = 214
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2QQK|L Chain L, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|L Chain L, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 214
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1FL6|L Chain L, The Hapten Complexed Germline Precursor To Sulfide Oxidase
Catalytic Antibody 28b4
pdb|1FL6|A Chain A, The Hapten Complexed Germline Precursor To Sulfide Oxidase
Catalytic Antibody 28b4
pdb|1FL5|L Chain L, The Unliganded Germline Precursor To The Sulfide Oxidase
Catalytic Antibody 28b4.
pdb|1FL5|A Chain A, The Unliganded Germline Precursor To The Sulfide Oxidase
Catalytic Antibody 28b4
Length = 217
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-------DVSHAA 467
TK++I T+ A SV F P G A + +L V +A
Sbjct: 107 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 159
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 160 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|1L7I|L Chain L, Crystal Structure Of The Anti-Erbb2 Fab2c4
pdb|1S78|C Chain C, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
pdb|1S78|E Chain E, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
Length = 214
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3P0V|L Chain L, Anti-EgfrHER3 FAB DL11 ALONE
pdb|3P0V|M Chain M, Anti-EgfrHER3 FAB DL11 ALONE
pdb|3P0Y|L Chain L, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAIN III OF EGFR
Extracellular Region
pdb|3P11|L Chain L, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAINS I-Iii Of
The Her3 Extracellular Region
Length = 214
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3M8O|L Chain L, Human Iga1 Fab Fragment
pdb|3QNX|A Chain A, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|A Chain A, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|C Chain C, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNZ|A Chain A, Orthorhombic Form Of Igg1 Fab Fragment (in Complex With
Antigenic Tubulin Peptide) Sharing Same Fv As Iga
pdb|3QO0|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (In Complex With
Antigenic Peptide) Sharing Same Fv As Iga
pdb|3QO1|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (apo Form) Sharing
Same Fv As Iga
Length = 219
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3BDY|L Chain L, Dual Specific Bh1 Fab In Complex With Vegf
pdb|3BE1|L Chain L, Dual Specific Bh1 Fab In Complex With The Extracellular
Domain Of Her2ERBB-2
Length = 218
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|2QQN|L Chain L, Neuropilin-1 B1 Domain In Complex With A Vegf-Blocking Fab
Length = 214
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1FVD|A Chain A, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVD|C Chain C, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVE|A Chain A, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVE|C Chain C, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
Length = 214
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3IXT|L Chain L, Crystal Structure Of Motavizumab Fab Bound To Peptide
Epitope
pdb|3IXT|B Chain B, Crystal Structure Of Motavizumab Fab Bound To Peptide
Epitope
pdb|3QWO|L Chain L, Crystal Structure Of A Motavizumab Epitope-Scaffold Bound
To Motavizumab Fab
pdb|3QWO|B Chain B, Crystal Structure Of A Motavizumab Epitope-Scaffold Bound
To Motavizumab Fab
Length = 213
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|1QLR|A Chain A, Crystal Structure Of The Fab Fragment Of A Human
Monoclonal Igm Cold Agglutinin
pdb|1QLR|C Chain C, Crystal Structure Of The Fab Fragment Of A Human
Monoclonal Igm Cold Agglutinin
pdb|1DN0|A Chain A, Structure Of The Fab Fragment From A Human Igm Cold
Agglutinin
pdb|1DN0|C Chain C, Structure Of The Fab Fragment From A Human Igm Cold
Agglutinin
Length = 215
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|3NA9|L Chain L, Crystal Structure Of Fab15
pdb|3NAA|L Chain L, Crystal Structure Of Fab15 Mut5
pdb|3NAB|L Chain L, Crystal Structure Of Fab15 Mut6
pdb|3NAC|L Chain L, Crystal Structure Of Fab15 Mut7
pdb|3ULU|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 214
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3F12|A Chain A, Germline V-Genes Sculpt The Binding Site Of A Family Of
Antibodies Neutralizing Human Cytomegalovirus
pdb|3F12|C Chain C, Germline V-Genes Sculpt The Binding Site Of A Family Of
Antibodies Neutralizing Human Cytomegalovirus
Length = 216
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|3BN9|C Chain C, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|E Chain E, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
Length = 214
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1A4K|L Chain L, Diels Alder Catalytic Antibody With Transition State
Analogue
pdb|1A4K|A Chain A, Diels Alder Catalytic Antibody With Transition State
Analogue
Length = 217
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|1PG7|L Chain L, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
pdb|1PG7|M Chain M, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
Length = 213
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1A4J|L Chain L, Diels Alder Catalytic Antibody Germline Precursor
pdb|1A4J|A Chain A, Diels Alder Catalytic Antibody Germline Precursor
Length = 217
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3SO3|B Chain B, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 217
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 153 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 202
>pdb|3NCJ|L Chain L, Crystal Structure Of Fab15 Mut8
Length = 214
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2JIX|A Chain A, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|G Chain G, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|L Chain L, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
Length = 214
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3O11|L Chain L, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
pdb|3O11|A Chain A, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
Length = 212
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 148 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 197
>pdb|3EO9|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab
pdb|3EOA|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOA|A Chain A, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOB|L Chain L, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
pdb|3EOB|A Chain A, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
Length = 214
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2FJH|L Chain L, Structure Of The B20-4 Fab, A Phage Derived Fab Fragment,
In Complex With Vegf
pdb|2FJH|A Chain A, Structure Of The B20-4 Fab, A Phage Derived Fab Fragment,
In Complex With Vegf
Length = 214
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1UJ3|A Chain A, Crystal Structure Of A Humanized Fab Fragment Of Anti-
Tissue-Factor Antibody In Complex With Tissue Factor
Length = 215
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3N85|L Chain L, Crystallographic Trimer Of Her2 Extracellular Regions In
Complex With Tryptophan-Rich Antibody Fragment
Length = 217
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3KDM|L Chain L, Crystal Structure Of Human Anti-Steroid Fab 5f2 In Complex
With Testosterone
pdb|3KDM|A Chain A, Crystal Structure Of Human Anti-Steroid Fab 5f2 In Complex
With Testosterone
Length = 218
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|3FN0|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab Z13e1 In
Complex With A 12-Residue Peptide Containing The Z13e1
Epitope On Gp41
pdb|3Q1S|L Chain L, Hiv-1 Neutralizing Antibody Z13e1 In Complex With Epitope
Display Protein
Length = 212
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 148 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 197
>pdb|3G6J|E Chain E, C3b In Complex With A C3b Specific Fab
pdb|3G6J|G Chain G, C3b In Complex With A C3b Specific Fab
Length = 214
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4DN3|L Chain L, Crystal Structure Of Anti-Mcp-1 Antibody Cnto888
pdb|4DN4|L Chain L, Crystal Structure Of The Complex Between Cnto888 Fab And
Mcp-1 Mutant P8a
Length = 216
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|4ERS|L Chain L, A Molecular Basis For Negative Regulation Of The Glucagon
Receptor
Length = 214
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3U30|B Chain B, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|E Chain E, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 214
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4DKF|L Chain L, Crystal Structure Of Human Interleukin-34 Bound To Fab2
pdb|4DKF|M Chain M, Crystal Structure Of Human Interleukin-34 Bound To Fab2
Length = 214
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2R8S|L Chain L, High Resolution Structure Of A Specific Synthetic Fab
Bound To P4-P6 Rna Ribozyme Domain
Length = 214
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2HFF|A Chain A, Crystal Structure Of Cb2 Fab
pdb|2HFF|L Chain L, Crystal Structure Of Cb2 Fab
Length = 214
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2FJF|L Chain L, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|A Chain A, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|C Chain C, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|E Chain E, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|G Chain G, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|J Chain J, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|M Chain M, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|O Chain O, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|Q Chain Q, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|S Chain S, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|U Chain U, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|W Chain W, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJG|L Chain L, Structure Of The G6 Fab, A Phage Derived Fab Fragment, In
Complex With Vegf
pdb|2FJG|A Chain A, Structure Of The G6 Fab, A Phage Derived Fab Fragment, In
Complex With Vegf
pdb|2H9G|A Chain A, Crystal Structure Of Phage Derived Fab Bdf1 With Human
Death Receptor 5 (dr5)
pdb|2H9G|L Chain L, Crystal Structure Of Phage Derived Fab Bdf1 With Human
Death Receptor 5 (dr5)
pdb|2R0K|L Chain L, Protease Domain Of Hgfa With Inhibitor Fab58
pdb|2R0L|L Chain L, Short Form Hgfa With Inhibitory Fab75
pdb|3GRW|L Chain L, Fgfr3 In Complex With A Fab
Length = 214
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|4HCR|L Chain L, Crystal Structure Of Human Madcam-1 D1d2 Complexed With
Fab Pf-547659
pdb|4HCR|N Chain N, Crystal Structure Of Human Madcam-1 D1d2 Complexed With
Fab Pf-547659
Length = 219
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|1PKQ|A Chain A, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|F Chain F, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 241
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 177 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 226
>pdb|1HZH|L Chain L, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1HZH|M Chain M, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1N0X|L Chain L, Crystal Structure Of A Broadly Neutralizing Anti-Hiv-1
Antibody In Complex With A Peptide Mimotope
pdb|1N0X|M Chain M, Crystal Structure Of A Broadly Neutralizing Anti-Hiv-1
Antibody In Complex With A Peptide Mimotope
pdb|2NY7|L Chain L, Hiv-1 Gp120 Envelope Glycoprotein Complexed With The
Broadly Neutralizing Cd4-Binding-Site Antibody B12
pdb|3RU8|L Chain L, Structure Of An Hiv Epitope Scaffold In Complex With
Neutralizing Antibody B12 Fab
Length = 215
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETFMS 520
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ + S
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRS 204
>pdb|1TZG|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A 13-residue Peptide Containing The 4e10
Epitope On Gp41
pdb|1TZG|M Chain M, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A 13-residue Peptide Containing The 4e10
Epitope On Gp41
pdb|2FX7|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A 16-Residue Peptide Encompassing The 4e10
Epitope On Gp41
pdb|2FX8|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX8|M Chain M, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX8|N Chain N, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX8|O Chain O, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With An Aib-Induced Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX9|L Chain L, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A Thioether-Linked Peptide Encompassing The
4e10 Epitope On Gp41
pdb|2FX9|M Chain M, Crystal Structure Of Hiv-1 Neutralizing Human Fab 4e10 In
Complex With A Thioether-Linked Peptide Encompassing The
4e10 Epitope On Gp41
Length = 214
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|1TZH|A Chain A, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
pdb|1TZH|L Chain L, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
Length = 213
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3B2U|L Chain L, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|D Chain D, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|G Chain G, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|K Chain K, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|O Chain O, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|R Chain R, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|U Chain U, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2U|X Chain X, Crystal Structure Of Isolated Domain Iii Of The
Extracellular Region Of The Epidermal Growth Factor
Receptor In Complex With The Fab Fragment Of Imc-11f8
pdb|3B2V|L Chain L, Crystal Structure Of The Extracellular Region Of The
Epidermal Growth Factor Receptor In Complex With The Fab
Fragment Of Imc-11f8
Length = 213
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3U46|L Chain L, Ch04hCH02L P212121
pdb|3U46|B Chain B, Ch04hCH02L P212121
pdb|3U4B|L Chain L, Ch04hCH02L FAB P4
Length = 215
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|3PGF|L Chain L, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 215
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|3L5Y|L Chain L, Crystal Structure Of The Complex Between Il-13 And M1295
Fab
Length = 213
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|2R56|L Chain L, Crystal Structure Of A Recombinant Ige Fab Fragment In
Complex With Bovine Beta-Lactoglobulin Allergen
pdb|2R56|M Chain M, Crystal Structure Of A Recombinant Ige Fab Fragment In
Complex With Bovine Beta-Lactoglobulin Allergen
Length = 211
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|3PP3|L Chain L, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type I
TYPE II Distinction Of Anti- Cd20 Antibodies
pdb|3PP3|K Chain K, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type I
TYPE II Distinction Of Anti- Cd20 Antibodies
pdb|3PP4|L Chain L, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type I
TYPE II Distinction Of Anti- Cd20 Antibodies
Length = 219
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3AAZ|B Chain B, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
pdb|3AAZ|L Chain L, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
Length = 229
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-------DVSHAA 467
TK++I T+ A SV F P G A + +L V +A
Sbjct: 107 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 159
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 160 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|2HFG|L Chain L, Crystal Structure Of Hbr3 Bound To Cb3s-fab
Length = 214
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1AD0|A Chain A, Fab Fragment Of Engineered Human Monoclonal Antibody A5b7
pdb|1AD0|C Chain C, Fab Fragment Of Engineered Human Monoclonal Antibody A5b7
Length = 213
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3QQ9|L Chain L, Crystal Structure Of Fab Fragment Of Anti-Human Rsv
(Respiratory Syncytial Virus) F Protein Mab 101f
pdb|3QQ9|C Chain C, Crystal Structure Of Fab Fragment Of Anti-Human Rsv
(Respiratory Syncytial Virus) F Protein Mab 101f
Length = 218
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|3QCT|L Chain L, Crystal Structure Of The Humanized Apo Lt3015
Anti-Lysophosphatidic Acid Antibody Fab Fragment
pdb|3QCU|L Chain L, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (14:0)
pdb|3QCU|M Chain M, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (14:0)
pdb|3QCV|L Chain L, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (18:2)
pdb|3QCV|M Chain M, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (18:2)
Length = 218
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3L5X|L Chain L, Crystal Structure Of The Complex Between Il-13 And H2l6
Fab
pdb|3L7F|L Chain L, Structure Of Il-13 Antibody H2l6, A Humanized Variant Of
C836
pdb|3L7F|A Chain A, Structure Of Il-13 Antibody H2l6, A Humanized Variant Of
C836
pdb|3L7F|D Chain D, Structure Of Il-13 Antibody H2l6, A Humanized Variant Of
C836
Length = 214
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2QR0|A Chain A, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|E Chain E, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|G Chain G, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|K Chain K, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|M Chain M, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|Q Chain Q, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|S Chain S, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|W Chain W, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
Length = 213
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|3EFD|L Chain L, The Crystal Structure Of The Cytoplasmic Domain Of Kcsa
Length = 211
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 486 EESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
++S ++ TL ++K D EKHKV A E+ +
Sbjct: 169 KDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|2GCY|A Chain A, Humanized Antibody C25 Fab Fragment
Length = 216
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|3SE9|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|4I3R|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P3221
pdb|4I3S|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P21
Length = 208
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 144 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 193
>pdb|1ZLS|L Chain L, Fab 2g12 + Man4
pdb|1ZLU|L Chain L, Fab 2g12 + Man5
pdb|1ZLU|K Chain K, Fab 2g12 + Man5
pdb|1ZLV|L Chain L, Fab 2g12 + Man7
pdb|1ZLV|K Chain K, Fab 2g12 + Man7
pdb|1ZLW|L Chain L, Fab 2g12 + Man8
pdb|1ZLW|K Chain K, Fab 2g12 + Man8
pdb|2OQJ|A Chain A, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
pdb|2OQJ|D Chain D, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
pdb|2OQJ|G Chain G, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
pdb|2OQJ|J Chain J, Crystal Structure Analysis Of Fab 2g12 In Complex With
Peptide 2g12.1
Length = 211
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|4HWE|L Chain L, Crystal Structure Of Ectodomain 3 Of The Il-13 Receptor
Alpha1 In Complex With A Human Neutralizing Monoclonal
Antibody Fragment
Length = 211
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 147 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 196
>pdb|4HWB|L Chain L, Crystal Structure Of Ectodomain 3 Of The Il-13 Receptor
Alpha 1 In Complex With A Human Neutralizing Monoclonal
Antibody Fragment
Length = 212
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 147 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 196
>pdb|3SDY|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
Length = 216
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|2EH7|L Chain L, Crystal Structure Of Humanized Kr127 Fab
Length = 219
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|2EH8|L Chain L, Crystal Structure Of The Complex Of Humanized Kr127 Fab
And Pres1 Peptide Epitope
Length = 218
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|4FQL|L Chain L, Influenza B Ha Antibody (Fab) Cr8033
Length = 215
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|3QEG|L Chain L, Crystal Structure Of Human N12-I2 Fab, An Adcc And
Neutralizing Anti- Hiv-1 Env Antibody
Length = 215
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|2NYY|C Chain C, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|C Chain C, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|E Chain E, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 218
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|2AGJ|L Chain L, Crystal Structure Of A Glycosylated Fab From An Igm
Cryoglobulin With Properties Of A Natural Proteolytic
Antibody
Length = 215
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 151 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|3EYF|A Chain A, Crystal Structure Of Anti-Human Cytomegalovirus Antibody
8f9 Plus Gb Peptide
pdb|3EYF|C Chain C, Crystal Structure Of Anti-Human Cytomegalovirus Antibody
8f9 Plus Gb Peptide
pdb|3EYO|A Chain A, Crystal Structure Of Anti-Human Cytomegalovirus Antibody
8f9
pdb|3EYO|C Chain C, Crystal Structure Of Anti-Human Cytomegalovirus Antibody
8f9
Length = 216
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|4F33|A Chain A, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|C Chain C, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|E Chain E, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|G Chain G, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F3F|A Chain A, Crystal Structure Of Msln7-64 Morab-009 Fab Complex
Length = 213
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|4DTG|L Chain L, Hemostatic Effect Of A Monoclonal Antibody Mab 2021
Blocking The Interaction Between Fxa And Tfpi In A
Rabbit Hemophilia Model
Length = 219
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 204
>pdb|3U1S|L Chain L, Crystal Structure Of Human Fab Pgt145, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
Length = 239
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 175 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 224
>pdb|1Y0L|L Chain L, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|A Chain A, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|C Chain C, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|E Chain E, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y18|L Chain L, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|A Chain A, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|C Chain C, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|E Chain E, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|3CFJ|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFK|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|G Chain G, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|J Chain J, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|M Chain M, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|O Chain O, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
Length = 216
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|1OM3|L Chain L, Fab 2g12 Unliganded
pdb|1OM3|M Chain M, Fab 2g12 Unliganded
pdb|1OP3|L Chain L, Crystal Structure Of Fab 2g12 Bound To Man1->2man
pdb|1OP3|K Chain K, Crystal Structure Of Fab 2g12 Bound To Man1->2man
pdb|1OP5|L Chain L, Crystal Structure Of Fab 2g12 Bound To Man9glcnac2
pdb|1OP5|K Chain K, Crystal Structure Of Fab 2g12 Bound To Man9glcnac2
pdb|3OAU|L Chain L, Antibody 2g12 Recognizes Di-Mannose Equivalently In
Domain- And Non- Domain-Exchanged Forms, But Only Binds
The Hiv-1 Glycan Shield If Domain-Exchanged
Length = 212
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|1UWG|L Chain L, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
pdb|1UWG|X Chain X, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
Length = 213
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH-------GADVSHAA 467
TK++I T+ A SV F P G A + +L V +A
Sbjct: 102 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAAVAWKVDNAL 154
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ +S ++ TL ++K D EKHKV A E+ +
Sbjct: 155 QSGNSQESVTEQ----DSADSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1I9R|L Chain L, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|M Chain M, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|Y Chain Y, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
Length = 218
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|3PJS|A Chain A, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|C Chain C, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 215
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|2OSL|L Chain L, Crystal Structure Of Rituximab Fab In Complex With An
Epitope Peptide
pdb|2OSL|B Chain B, Crystal Structure Of Rituximab Fab In Complex With An
Epitope Peptide
Length = 213
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML-------LEHGADVSHAA 467
TK++I T+ A SV F P G A + +L + V +A
Sbjct: 101 TKLEIKRTVA-------APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 153
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 QSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3QEH|B Chain B, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|D Chain D, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|F Chain F, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|H Chain H, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
Length = 218
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 154 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 203
>pdb|3OAY|K Chain K, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OAY|L Chain L, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OAZ|K Chain K, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OAZ|L Chain L, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OB0|L Chain L, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
pdb|3OB0|K Chain K, A Non-Self Sugar Mimic Of The Hiv Glycan Shield Shows
Enhanced Antigenicity
Length = 213
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 199
>pdb|1MIM|L Chain L, Igg Fab Fragment (Cd25-Binding)
pdb|3IU3|B Chain B, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3IU3|D Chain D, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3IU3|L Chain L, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
Length = 210
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 147 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 196
>pdb|3BKY|L Chain L, Crystal Structure Of Chimeric Antibody C2h7 Fab In Complex
With A Cd20 Peptide
Length = 213
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 198
>pdb|3ZSS|A Chain A, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|B Chain B, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|C Chain C, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|D Chain D, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZST|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZST|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZT5|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT6|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT7|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
Length = 695
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 94 GDGFTPLAVAMQQGHDKVVAVLLENDTRGKDG-FTPLAVAMQQGHDKVVAVLLENDT 149
G+ F A ++GHD V A ++ D RG+ G +TP+ + G D+ A + +T
Sbjct: 62 GESFEVSATVFREGHDAVGANVVLRDPRGRPGPWTPMR-ELAPGTDRWGATVTAGET 117
>pdb|3EFF|A Chain A, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|C Chain C, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 215
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 152 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 201
>pdb|2X7L|L Chain L, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|B Chain B, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|D Chain D, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|K Chain K, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|F Chain F, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|I Chain I, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
Length = 217
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHKV A E+ +
Sbjct: 153 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ 202
>pdb|3UAJ|L Chain L, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UAJ|D Chain D, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UC0|L Chain L, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
pdb|3UC0|M Chain M, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
Length = 215
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML-------LEHGADVSHAA 467
TK++I T+ A SV F P G A ++ +L + V +A
Sbjct: 103 TKVEIKRTVA-------APSVFIFPPSDEQLKSGTASVACLLNNFYPREAKVQWKVDNAL 155
Query: 468 KEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
+ G++ S+ ++ +++ ++ TL ++K D EKHKV A E+ +
Sbjct: 156 QSGNSQESVTEQ----DSKDNTYSLSSTLTLSKADYEKHKVYACEVTHQ 200
>pdb|1RZG|B Chain B, Crystal Structure Of Human Anti-hiv-1 Gp120 Reactive
Antibody 412d
pdb|1RZG|D Chain D, Crystal Structure Of Human Anti-hiv-1 Gp120 Reactive
Antibody 412d
pdb|2QAD|C Chain C, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|G Chain G, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 214
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHK+ A E+ +
Sbjct: 150 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQ 199
>pdb|3JWO|L Chain L, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 209
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 463 VSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQE 516
V +A + G++ S+ ++ ++S ++ TL ++K D EKHK+ A E+ +
Sbjct: 149 VDNALQSGNSQESVTEQ----DSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQ 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,841,300
Number of Sequences: 62578
Number of extensions: 595290
Number of successful extensions: 3485
Number of sequences better than 100.0: 339
Number of HSP's better than 100.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 1429
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)