Query psy2356
Match_columns 529
No_of_seqs 262 out of 3019
Neff 11.4
Searched_HMMs 29240
Date Fri Aug 16 22:54:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 9E-65 3.1E-69 495.4 46.4 409 2-518 12-424 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.7E-59 5.9E-64 458.0 41.4 378 26-510 3-384 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2.8E-46 9.4E-51 351.4 36.1 296 3-466 24-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 2.5E-43 8.5E-48 331.3 32.8 289 155-498 26-329 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 5.5E-43 1.9E-47 331.8 32.5 316 3-481 23-350 (351)
6 1wdy_A 2-5A-dependent ribonucl 100.0 1.7E-42 5.7E-47 318.3 32.6 255 2-307 3-281 (285)
7 1wdy_A 2-5A-dependent ribonucl 100.0 8.4E-42 2.9E-46 313.7 30.3 262 155-500 6-283 (285)
8 2fo1_E LIN-12 protein; beta-ba 100.0 2.6E-43 8.7E-48 334.7 19.9 318 98-495 39-371 (373)
9 3utm_A Tankyrase-1; tankyrase, 100.0 1.7E-41 5.9E-46 321.5 27.7 293 155-510 25-320 (351)
10 2fo1_E LIN-12 protein; beta-ba 100.0 5.8E-42 2E-46 325.4 20.9 283 103-463 73-372 (373)
11 3d9h_A CDNA FLJ77766, highly s 100.0 2.3E-40 7.9E-45 302.3 25.4 229 206-497 52-281 (285)
12 3d9h_A CDNA FLJ77766, highly s 100.0 3.1E-40 1.1E-44 301.4 25.1 255 2-341 13-282 (285)
13 2xai_A ASB-9, ankyrin repeat a 100.0 1.7E-40 5.9E-45 299.5 22.8 217 3-303 2-221 (261)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 6.2E-40 2.1E-44 294.5 22.7 234 205-497 2-250 (253)
15 3ljn_A Hypothetical protein; a 100.0 2.5E-40 8.4E-45 314.4 19.5 245 2-304 18-269 (364)
16 1oy3_D Transcription factor in 100.0 2.2E-39 7.6E-44 296.9 22.4 260 1-323 6-269 (282)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 6.5E-39 2.2E-43 287.9 23.8 231 28-337 1-248 (253)
18 2xai_A ASB-9, ankyrin repeat a 100.0 9.1E-39 3.1E-43 288.2 23.1 250 212-491 2-259 (261)
19 3b7b_A Euchromatic histone-lys 100.0 4E-38 1.4E-42 280.4 25.9 228 205-491 3-231 (237)
20 1k1a_A B-cell lymphoma 3-encod 100.0 1.1E-38 3.7E-43 285.0 20.7 229 207-494 3-240 (241)
21 1oy3_D Transcription factor in 100.0 2.4E-38 8.1E-43 290.1 23.2 248 207-479 3-267 (282)
22 3ljn_A Hypothetical protein; a 100.0 2.4E-39 8.2E-44 307.6 17.0 271 204-497 11-316 (364)
23 1k1a_A B-cell lymphoma 3-encod 100.0 2.7E-38 9.2E-43 282.5 22.8 227 2-334 7-238 (241)
24 3b7b_A Euchromatic histone-lys 100.0 1.3E-37 4.4E-42 277.2 27.0 126 207-332 105-230 (237)
25 3aji_A 26S proteasome non-ATPa 100.0 8.4E-38 2.9E-42 277.2 23.0 226 212-496 5-231 (231)
26 1s70_B 130 kDa myosin-binding 100.0 8E-39 2.7E-43 295.6 14.8 237 211-480 38-275 (299)
27 3aji_A 26S proteasome non-ATPa 100.0 6.5E-37 2.2E-41 271.5 24.0 221 3-333 5-226 (231)
28 4b93_B Ankyrin repeat domain-c 100.0 2.1E-38 7.1E-43 285.4 13.5 228 209-497 7-243 (269)
29 3kea_A K1L; tropism, ANK repea 100.0 2.4E-37 8.1E-42 282.2 19.7 225 205-499 23-250 (285)
30 3eu9_A Huntingtin-interacting 100.0 3.8E-36 1.3E-40 268.4 25.0 232 207-497 3-237 (240)
31 3eu9_A Huntingtin-interacting 100.0 1.5E-35 5.2E-40 264.6 26.8 223 2-304 7-235 (240)
32 2f8y_A Notch homolog 1, transl 100.0 7.7E-36 2.6E-40 263.0 24.4 212 192-495 3-216 (223)
33 2dzn_A Probable 26S proteasome 100.0 6.6E-36 2.2E-40 264.5 23.6 221 4-332 2-225 (228)
34 4b93_B Ankyrin repeat domain-c 100.0 5.6E-37 1.9E-41 276.1 16.7 208 3-291 10-230 (269)
35 1sw6_A Regulatory protein SWI6 100.0 1.4E-37 4.6E-42 289.5 11.9 259 191-481 30-327 (327)
36 2dzn_A Probable 26S proteasome 100.0 9.5E-36 3.3E-40 263.4 22.0 219 213-492 2-227 (228)
37 1s70_B 130 kDa myosin-binding 100.0 1.6E-35 5.6E-40 273.4 21.0 231 3-287 39-273 (299)
38 2f8y_A Notch homolog 1, transl 100.0 4.3E-35 1.5E-39 258.2 22.6 210 15-305 2-217 (223)
39 3kea_A K1L; tropism, ANK repea 100.0 1.7E-35 5.9E-40 269.8 18.9 233 11-335 6-244 (285)
40 2rfa_A Transient receptor pote 100.0 5E-34 1.7E-38 253.0 23.2 210 212-500 2-227 (232)
41 1sw6_A Regulatory protein SWI6 100.0 1.2E-36 4E-41 283.3 5.0 198 218-448 102-327 (327)
42 2rfa_A Transient receptor pote 100.0 6.7E-33 2.3E-37 245.7 22.3 213 3-307 2-225 (232)
43 1ikn_D Protein (I-kappa-B-alph 100.0 3.2E-34 1.1E-38 254.8 12.7 203 209-497 4-211 (236)
44 1ikn_D Protein (I-kappa-B-alph 100.0 2.3E-34 7.7E-39 255.7 11.4 215 1-319 5-226 (236)
45 3hra_A Ankyrin repeat family p 100.0 1.9E-32 6.7E-37 237.0 23.1 192 245-493 4-201 (201)
46 4gpm_A Engineered protein OR26 100.0 2.6E-32 8.9E-37 226.2 20.2 158 216-465 7-164 (169)
47 4gpm_A Engineered protein OR26 100.0 4E-32 1.4E-36 225.1 19.8 157 249-497 7-163 (169)
48 3hra_A Ankyrin repeat family p 100.0 1.7E-31 5.9E-36 231.0 24.2 192 211-460 3-201 (201)
49 2etb_A Transient receptor pote 100.0 3.4E-33 1.2E-37 251.4 13.8 213 213-501 2-252 (256)
50 2pnn_A Transient receptor pote 100.0 2E-32 6.8E-37 248.8 15.7 227 2-315 11-270 (273)
51 2etb_A Transient receptor pote 100.0 5.8E-32 2E-36 243.4 18.2 62 4-65 2-74 (256)
52 2pnn_A Transient receptor pote 100.0 2.3E-32 8E-37 248.4 14.3 219 204-473 4-270 (273)
53 3jxi_A Vanilloid receptor-rela 100.0 2.9E-31 1E-35 239.4 14.0 214 211-499 3-254 (260)
54 2aja_A Ankyrin repeat family p 100.0 1.8E-32 6.1E-37 256.5 2.8 249 214-492 93-371 (376)
55 3jxi_A Vanilloid receptor-rela 100.0 3.6E-30 1.2E-34 232.3 16.1 218 2-306 3-252 (260)
56 4hbd_A KN motif and ankyrin re 100.0 5.4E-30 1.9E-34 232.1 13.0 186 249-493 79-273 (276)
57 2rfm_A Putative ankyrin repeat 100.0 3.5E-29 1.2E-33 214.5 16.4 162 240-493 29-190 (192)
58 3v30_A DNA-binding protein rfx 100.0 9.2E-29 3.2E-33 207.8 16.5 168 214-473 3-171 (172)
59 3v31_A Ankyrin repeat family A 100.0 1.8E-28 6.2E-33 204.9 18.2 160 246-497 3-162 (167)
60 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.5E-28 1.2E-32 203.4 19.7 67 427-493 103-169 (169)
61 4hbd_A KN motif and ankyrin re 100.0 4.9E-29 1.7E-33 225.9 14.7 194 4-302 76-273 (276)
62 2aja_A Ankyrin repeat family p 100.0 2.9E-32 9.9E-37 255.1 -7.1 202 214-459 164-371 (376)
63 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.8E-28 9.7E-33 202.7 16.9 112 213-325 5-116 (162)
64 3v30_A DNA-binding protein rfx 100.0 3.1E-28 1.1E-32 204.6 16.6 165 247-503 3-168 (172)
65 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.7E-28 1.3E-32 202.1 15.8 156 246-494 5-161 (162)
66 1awc_B Protein (GA binding pro 100.0 2.3E-27 7.7E-32 194.9 18.1 88 384-490 66-153 (153)
67 2rfm_A Putative ankyrin repeat 100.0 2.7E-27 9.2E-32 202.7 18.0 161 206-367 28-188 (192)
68 3f6q_A Integrin-linked protein 100.0 2.7E-27 9.3E-32 200.1 17.6 167 212-470 4-171 (179)
69 3v31_A Ankyrin repeat family A 99.9 8.3E-27 2.8E-31 194.8 19.0 156 154-335 3-158 (167)
70 2y1l_E Darpin-8.4; hydrolase-i 99.9 9.8E-27 3.4E-31 194.6 19.5 153 155-333 15-167 (169)
71 2vge_A RELA-associated inhibit 99.9 2.8E-30 9.6E-35 226.6 -3.0 191 213-497 21-216 (229)
72 3f6q_A Integrin-linked protein 99.9 2.8E-27 9.6E-32 200.0 14.9 164 245-500 4-168 (179)
73 3twr_A Tankyrase-2; ankyrin re 99.9 1.9E-27 6.5E-32 198.3 13.2 157 244-493 6-163 (165)
74 1awc_B Protein (GA binding pro 99.9 2E-26 7E-31 189.2 18.1 149 156-331 4-152 (153)
75 1bd8_A P19INK4D CDK4/6 inhibit 99.9 9.6E-26 3.3E-30 186.0 17.8 127 205-333 28-154 (156)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 6.7E-26 2.3E-30 187.0 16.1 149 214-365 3-152 (156)
77 3twr_A Tankyrase-2; ankyrin re 99.9 3.6E-26 1.2E-30 190.5 13.9 155 154-334 8-162 (165)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.8E-27 6.2E-32 211.0 6.0 187 212-493 4-202 (239)
79 2vge_A RELA-associated inhibit 99.9 1.9E-28 6.6E-33 214.9 -1.8 182 155-365 22-207 (229)
80 3t8k_A Uncharacterized protein 99.9 1.7E-26 5.9E-31 194.7 9.5 165 247-499 7-183 (186)
81 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.2E-26 1.1E-30 203.0 11.2 100 382-500 67-169 (239)
82 1d9s_A Cyclin-dependent kinase 99.9 6.8E-25 2.3E-29 176.0 12.8 129 204-333 3-132 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 4.4E-25 1.5E-29 181.7 10.9 142 243-477 9-151 (156)
84 1d9s_A Cyclin-dependent kinase 99.9 1.5E-24 5.1E-29 174.0 13.2 131 236-368 2-133 (136)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 4.4E-24 1.5E-28 175.7 11.6 144 208-353 7-151 (156)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 2.3E-23 8E-28 167.0 15.0 121 2-148 12-136 (136)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 3.2E-23 1.1E-27 166.2 14.0 123 211-333 12-134 (136)
88 3t8k_A Uncharacterized protein 99.9 5.7E-24 1.9E-28 179.3 10.0 156 213-370 6-178 (186)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.5E-23 2.2E-27 162.4 15.2 121 3-149 1-125 (126)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.5E-22 5.1E-27 160.3 15.7 124 212-335 1-124 (126)
91 3c5r_A BARD-1, BRCA1-associate 99.9 1.6E-23 5.4E-28 168.4 9.4 129 204-333 2-130 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.7E-23 5.7E-28 168.2 8.8 68 427-494 66-133 (137)
93 3deo_A Signal recognition part 99.9 3.1E-23 1.1E-27 175.5 9.2 137 210-365 41-178 (183)
94 2b0o_E UPLC1; arfgap, structur 99.9 1.1E-21 3.6E-26 179.1 16.1 140 213-359 151-299 (301)
95 3aaa_C Myotrophin, protein V-1 99.9 3.2E-22 1.1E-26 157.3 10.2 116 211-326 5-120 (123)
96 3ui2_A Signal recognition part 99.9 7.3E-22 2.5E-26 175.2 13.2 136 211-365 43-179 (244)
97 3deo_A Signal recognition part 99.9 8E-22 2.7E-26 166.8 12.3 133 3-175 43-180 (183)
98 3aaa_C Myotrophin, protein V-1 99.9 9.4E-22 3.2E-26 154.6 11.2 114 2-141 5-122 (123)
99 3ui2_A Signal recognition part 99.9 1.3E-21 4.6E-26 173.5 12.1 138 2-179 43-185 (244)
100 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.9E-21 1.7E-25 142.0 11.9 93 3-121 1-93 (93)
101 1dcq_A PYK2-associated protein 99.8 1.8E-20 6.1E-25 169.0 14.1 130 348-496 132-264 (278)
102 2b0o_E UPLC1; arfgap, structur 99.8 7.2E-21 2.5E-25 173.6 11.2 145 155-325 152-299 (301)
103 1dcq_A PYK2-associated protein 99.8 2.8E-20 9.6E-25 167.7 14.1 123 214-336 131-262 (278)
104 3ehr_A Osteoclast-stimulating 99.8 5E-21 1.7E-25 167.7 9.0 126 210-335 70-196 (222)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 8.5E-20 2.9E-24 135.2 12.8 92 213-304 2-93 (93)
106 3jue_A Arfgap with coiled-coil 99.8 1.1E-19 3.6E-24 169.4 13.8 144 211-354 197-345 (368)
107 3ehr_A Osteoclast-stimulating 99.8 3.7E-20 1.3E-24 162.2 9.7 133 154-312 73-206 (222)
108 2l6b_A NR1C; ankyrin, consensu 99.8 6.5E-20 2.2E-24 142.1 9.1 109 208-316 4-112 (115)
109 3lvq_E ARF-GAP with SH3 domain 99.8 1.4E-18 4.9E-23 170.6 18.1 122 214-335 133-263 (497)
110 2l6b_A NR1C; ankyrin, consensu 99.8 3.5E-19 1.2E-23 138.0 9.0 107 380-505 4-110 (115)
111 3jue_A Arfgap with coiled-coil 99.8 1.9E-18 6.5E-23 160.9 15.0 139 156-320 201-345 (368)
112 3lvq_E ARF-GAP with SH3 domain 99.8 1.2E-18 4E-23 171.2 14.2 134 155-308 133-269 (497)
113 2zgd_A 3 repeat synthetic anky 99.7 7.9E-18 2.7E-22 128.8 11.2 88 2-115 22-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 6.5E-18 2.2E-22 129.2 10.3 93 379-490 18-110 (110)
115 1gp8_A Protein (scaffolding pr 62.6 5.2 0.00018 22.1 2.0 18 7-24 16-33 (40)
116 3mkq_B Coatomer subunit alpha; 53.3 26 0.00088 28.0 5.5 134 1-175 5-139 (177)
117 3mkq_B Coatomer subunit alpha; 46.1 9.5 0.00033 30.5 2.0 16 160-175 43-58 (177)
118 4g26_A Pentatricopeptide repea 42.2 72 0.0025 30.6 8.0 100 227-332 91-198 (501)
119 3zrh_A Ubiquitin thioesterase 36.2 90 0.0031 28.5 6.7 49 10-58 28-90 (454)
120 4g26_A Pentatricopeptide repea 33.8 35 0.0012 32.9 4.2 139 6-175 31-199 (501)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9e-65 Score=495.36 Aligned_cols=409 Identities=34% Similarity=0.546 Sum_probs=294.2
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
..|.||||.||..|++++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~---------- 81 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ---------- 81 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC----------
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC----------
Confidence 5789999999999999999999999999999999999999999999999999999999999987766554
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 157 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 157 (529)
|||++|+..|+.+++++|++++++ +..|.|||++|+..|+.+++++|++.+..
T Consensus 82 ----------------t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------- 138 (437)
T 1n11_A 82 ----------------TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS------- 138 (437)
T ss_dssp ----------------CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-------
T ss_pred ----------------CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-------
Confidence 455567889999999999998765 66788888888888888888888876543
Q ss_pred HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy2356 158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237 (529)
Q Consensus 158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~ 237 (529)
.+..+..|.||||+|+..|+.+++++|+++|+
T Consensus 139 ------------------------------------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 170 (437)
T 1n11_A 139 ------------------------------------------------QACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170 (437)
T ss_dssp ------------------------------------------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ------------------------------------------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 12233345556666666666666666666666
Q ss_pred CCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHH
Q psy2356 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALS 317 (529)
Q Consensus 238 ~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~ 317 (529)
+++..+..|.|||+.|+..++.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 171 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 250 (437)
T 1n11_A 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250 (437)
T ss_dssp CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 55555555666666666666666666666665555555555566666666666666666666666655555555666666
Q ss_pred HHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCC
Q psy2356 318 IAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR 397 (529)
Q Consensus 318 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 397 (529)
+|+..|+.+++++|++. ..+.+..+..|.||||+|+..++.+++++|.+ .....+..+..|.||||+|+..|+
T Consensus 251 ~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~~g~ 323 (437)
T 1n11_A 251 LAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIK------HGVMVDATTRMGYTPLHVASHYGN 323 (437)
T ss_dssp HHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH------HTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred HHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh------CCccCCCCCCCCCCHHHHHHHcCc
Confidence 66666666666655543 33445555556666666666666666665522 122335667789999999999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHH
Q psy2356 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477 (529)
Q Consensus 398 ~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 477 (529)
.+++++|+++ |+++|.++..|+||||+|+++|+.++|++|+++|++++.+|..|.||+++|
T Consensus 324 ~~~v~~Ll~~-------------------gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A 384 (437)
T 1n11_A 324 IKLVKFLLQH-------------------QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384 (437)
T ss_dssp SHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred HHHHHHHHhc-------------------CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence 9988888876 556788888999999999999999999999999999999999999999999
Q ss_pred HHhCCchHHHHhhcccchhhhccCCCCccccchhhhhhhcc
Q psy2356 478 QKLGYISVEESLKGVTETLIIAKGDGEKHKVVAPEIMQETF 518 (529)
Q Consensus 478 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (529)
.+.|+.+++++|........... .....+...|+.+.+.+
T Consensus 385 ~~~g~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 424 (437)
T 1n11_A 385 KRLGYISVTDVLKVVTDETSFVL-VSDKHRMSFPETVDEIL 424 (437)
T ss_dssp HHTTCHHHHHHHHHHCCCCSSCC-----CCCCCCCCCCC--
T ss_pred HHcCcHHHHHHHHhccccccccc-cchhcccCCccccchhh
Confidence 99999999999987765433221 12223334455555443
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-59 Score=458.03 Aligned_cols=378 Identities=35% Similarity=0.509 Sum_probs=329.9
Q ss_pred cCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccccCCCCCHHHHHHH
Q psy2356 26 NNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQ 105 (529)
Q Consensus 26 ~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~ 105 (529)
.|++++..+..|+||||+||..|+.++|++|+++|++++..+..+. |||++|+.
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~--------------------------t~L~~A~~ 56 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE--------------------------TPLHMAAR 56 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC--------------------------CHHHHHHH
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC--------------------------CHHHHHHH
Confidence 5788899999999999999999999999999999999987665544 55667788
Q ss_pred cCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHHHhccCCCC
Q psy2356 106 QGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVD 181 (529)
Q Consensus 106 ~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~ 181 (529)
.|+.+++++|++.+++ +..+.|||++|+..|+.+++++|++++
T Consensus 57 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--------------------------------- 103 (437)
T 1n11_A 57 AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN--------------------------------- 103 (437)
T ss_dssp HTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT---------------------------------
T ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC---------------------------------
Confidence 9999999999998765 566778888888888777777776533
Q ss_pred CCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHH
Q psy2356 182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNI 261 (529)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~ 261 (529)
.+++..+..|.||||+|+..|+.+++++|++.+++.+..+..|.|||++|+..|+.++
T Consensus 104 ----------------------a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 104 ----------------------ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 161 (437)
T ss_dssp ----------------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred ----------------------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 3445667789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhccccccc
Q psy2356 262 VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKK 341 (529)
Q Consensus 262 v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~ 341 (529)
+++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.. .+++.
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~ 240 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANA 240 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998654 56788
Q ss_pred CCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHH
Q psy2356 342 RGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIAT 421 (529)
Q Consensus 342 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 421 (529)
.+..|.||||+|+..++.+++++|.+. ..+.+..+..|.||||+|+..|+.+++++|+++
T Consensus 241 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------------- 300 (437)
T 1n11_A 241 ESVQGVTPLHLAAQEGHAEMVALLLSK------QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-------------- 300 (437)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH--------------
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--------------
Confidence 889999999999999999999999432 233467788999999999999999998888876
Q ss_pred HHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhccC
Q psy2356 422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKG 501 (529)
Q Consensus 422 ~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~ 501 (529)
|++++.++..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|++++.++...+.
T Consensus 301 -----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~ 375 (437)
T 1n11_A 301 -----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375 (437)
T ss_dssp -----TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred -----CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCC
Confidence 556788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccch
Q psy2356 502 DGEKHKVVA 510 (529)
Q Consensus 502 ~~~~~~~~~ 510 (529)
.|++...+.
T Consensus 376 ~g~t~l~~A 384 (437)
T 1n11_A 376 DGTTPLAIA 384 (437)
T ss_dssp SSCCHHHHH
T ss_pred CCCCHHHHH
Confidence 998877765
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.8e-46 Score=351.44 Aligned_cols=296 Identities=26% Similarity=0.333 Sum_probs=202.8
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANA-NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
+|+|+|+.||+.|++++|++|+++|+++|..+. .|+||||+||..|+.++|++|+++|++++..+..+.+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~--------- 94 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT--------- 94 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC---------
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc---------
Confidence 589999999999999999999999999998765 5999999999999999999999999999887766555
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 157 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 157 (529)
+++.++..+...++..++..+.+ +..|.||+++|+..|+.+++++|++.+.+.....
T Consensus 95 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~-- 155 (337)
T 4g8k_A 95 -----------------PFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR-- 155 (337)
T ss_dssp -----------------HHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC--
T ss_pred -----------------hhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh--
Confidence 45566778888999999888655 6677888888888888888887777655432110
Q ss_pred HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh-CC
Q psy2356 158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD-KR 236 (529)
Q Consensus 158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g 236 (529)
.........+..|.||||+|+..|+.+++++|++ .|
T Consensus 156 -------------------------------------------~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~g 192 (337)
T 4g8k_A 156 -------------------------------------------KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192 (337)
T ss_dssp -------------------------------------------CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSC
T ss_pred -------------------------------------------ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccC
Confidence 1111222344456666666666666666666664 46
Q ss_pred CCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccccccc
Q psy2356 237 ADVNFSAKSGLTPLHVASFMGC----MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN-GAQVDARARE 311 (529)
Q Consensus 237 ~~~~~~~~~~~~~l~~a~~~~~----~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~ 311 (529)
++++..+..|.++++.++..+. .+++++|+++|++++.++..|.||||+|+..|+.+++++|++. |++++.+
T Consensus 193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~--- 269 (337)
T 4g8k_A 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT--- 269 (337)
T ss_dssp CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCB---
T ss_pred CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCc---
Confidence 6666666666666665544332 2344555555555555555555555555555555555555542 3444333
Q ss_pred CCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHH
Q psy2356 312 GHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHL 391 (529)
Q Consensus 312 g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~ 391 (529)
+..|.||||+
T Consensus 270 ----------------------------------------------------------------------d~~G~TpL~~ 279 (337)
T 4g8k_A 270 ----------------------------------------------------------------------DSDGKTALLL 279 (337)
T ss_dssp ----------------------------------------------------------------------CTTSCBHHHH
T ss_pred ----------------------------------------------------------------------CCCCCCHHHH
Confidence 3345566666
Q ss_pred HHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcch
Q psy2356 392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA 466 (529)
Q Consensus 392 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 466 (529)
|+..|+.+++++|+++|+++ | +.+|||+|+++|+.++|++|+++||+++..
T Consensus 280 A~~~g~~~iv~~Ll~~GAd~-------------------n-----~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 280 AVELKLKKIAELLCKRGAST-------------------D-----CGDLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHTTCHHHHHHHHTTSCSS-------------------T-----TCCHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred HHHcCCHHHHHHHHHCCCCC-------------------C-----CCCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 67777777777777765543 3 346899999999999999999999988753
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.5e-43 Score=331.28 Aligned_cols=289 Identities=24% Similarity=0.268 Sum_probs=255.9
Q ss_pred cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHH
Q psy2356 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK-SGFTPLHIASHYGNEGVANILL 233 (529)
Q Consensus 155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll 233 (529)
.|+|+.|++.|+.++|++|++.|+ +++.++. .|.||||+|+..|+.+++++|+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Ga--------------------------dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll 79 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGA--------------------------NVNFQEEEGGWTPLHNAVQMSREDIVELLL 79 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTC--------------------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCC--------------------------CCCccCCCCCcCHHHHHHHcCCHHHHHHHH
Confidence 468899999999999999996554 4555554 5899999999999999999999
Q ss_pred hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc-----
Q psy2356 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDAR----- 308 (529)
Q Consensus 234 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----- 308 (529)
++|++++..+..+.++++.++..+....+..+++.+.+++..+..|.||+|+|+..|+.+++++|+++|++++..
T Consensus 80 ~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~ 159 (337)
T 4g8k_A 80 RHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 159 (337)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-
T ss_pred HcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred -----cccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchh----HHHHhhhhhhHHHHhhcCC
Q psy2356 309 -----AREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYIS----VEESLKGVTETLIIAKGDG 379 (529)
Q Consensus 309 -----~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~----~~~~l~~~~~~~~~~~~~~ 379 (529)
+..|.||||+|+..|+.+++++|+...+.+++..+..|.++++.++..+... ++++| +....+.+
T Consensus 160 ~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL------l~~gad~n 233 (337)
T 4g8k_A 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL------LDHGADVN 233 (337)
T ss_dssp ----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH------HHTTCCTT
T ss_pred ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHH------HHCCCCCC
Confidence 4468999999999999999999998888999999999999999988766543 44554 11223447
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2356 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459 (529)
Q Consensus 380 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 459 (529)
..+..|.||||+|+..|+.+++++|++. .|++++.+|..|+||||+|++.|+.++|++|+++
T Consensus 234 ~~d~~g~t~L~~a~~~~~~~~v~~Ll~~------------------~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 295 (337)
T 4g8k_A 234 VRGERGKTPLILAVEKKHLGLVQRLLEQ------------------EHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295 (337)
T ss_dssp CCCGGGCCHHHHHHHTTCHHHHHHHHTS------------------TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred CcCCCCCCHHHHHHHhhhhHHHHHHHHh------------------cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 7888999999999999999999998874 3678899999999999999999999999999999
Q ss_pred CCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhh
Q psy2356 460 GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLII 498 (529)
Q Consensus 460 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~ 498 (529)
|++++. .+||++|++.|+.++|++|+++++++.+
T Consensus 296 GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 296 GASTDC-----GDLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp SCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred CCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 999875 4699999999999999999999998764
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.5e-43 Score=331.80 Aligned_cols=316 Identities=26% Similarity=0.306 Sum_probs=198.2
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKN-NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
.|.|+||.||+.|+.+.|+.++.. +.+++..|..|.||||+|+..|+.++|++|+++|++++.++..|.|
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t--------- 93 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV--------- 93 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC---------
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc---------
Confidence 578999999999999999999975 8899999999999999999999999999999999999887766554
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCC----CC
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRG----KV 153 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~----~~ 153 (529)
|||+|+..|+.+++++|++++.+ +..|.|||++|+..|+.+++++|++++.+. ..
T Consensus 94 -----------------~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 156 (351)
T 3utm_A 94 -----------------PLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156 (351)
T ss_dssp -----------------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred -----------------HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence 55567889999999999999765 566788888888888888888888765432 23
Q ss_pred CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356 154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233 (529)
Q Consensus 154 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll 233 (529)
+.++++.++..+..+.+.+... ..++..++..++.+.++.++
T Consensus 157 g~~~l~~a~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~l 198 (351)
T 3utm_A 157 GKSAVDMAPTPELRERLTYEFK--------------------------------------GHSLLQAAREADLAKVKKTL 198 (351)
T ss_dssp SCCHHHHCSSHHHHHHHHHHHH--------------------------------------HHHHHHHHHTTCHHHHHHHT
T ss_pred CCcchHHHhhhhhHHHHHhhhc--------------------------------------ccHHHHHHHhccHHHHHHHH
Confidence 3455555555444444444332 13444455555555555555
Q ss_pred hCCCCCcccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccc
Q psy2356 234 DKRADVNFSAKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR 310 (529)
Q Consensus 234 ~~g~~~~~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~ 310 (529)
..+......+..+.||||+|+.. +..+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 199 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~ 278 (351)
T 3utm_A 199 ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS 278 (351)
T ss_dssp TTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 44443333444455555555555 334455555555555555555555555555555555555555555554444333
Q ss_pred cCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHH
Q psy2356 311 EGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLH 390 (529)
Q Consensus 311 ~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~ 390 (529)
.|.||||
T Consensus 279 -------------------------------------------------------------------------~g~t~L~ 285 (351)
T 3utm_A 279 -------------------------------------------------------------------------LGQTALH 285 (351)
T ss_dssp -------------------------------------------------------------------------TSCCHHH
T ss_pred -------------------------------------------------------------------------CCCCHHH
Confidence 3445555
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcC
Q psy2356 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEG 470 (529)
Q Consensus 391 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 470 (529)
+|+..|+.+++++|+++ |++++.++..|+||+++| ..+++++|.+.+.. ....+
T Consensus 286 ~A~~~~~~~~v~~Ll~~-------------------gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~ 339 (351)
T 3utm_A 286 RAALAGHLQTCRLLLSY-------------------GSDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDV 339 (351)
T ss_dssp HHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHS----CHHHHHHHHHC-----------
T ss_pred HHHHcCcHHHHHHHHHc-------------------CCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcc
Confidence 55555655555555554 445566777777777776 45677777776432 23456
Q ss_pred CCHHHHHHHhC
Q psy2356 471 HTALSIAQKLG 481 (529)
Q Consensus 471 ~t~l~~A~~~~ 481 (529)
.+++..|++.|
T Consensus 340 ~~~l~~A~~~g 350 (351)
T 3utm_A 340 DYRLLEASKAG 350 (351)
T ss_dssp -----------
T ss_pred eeehhhhhccC
Confidence 66777777665
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-42 Score=318.34 Aligned_cols=255 Identities=26% Similarity=0.339 Sum_probs=170.5
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhc
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTA-NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG 80 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~ 80 (529)
.+|+|+|+.||+.|++++|++|++.|.+++.. +..|+||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~--------- 73 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA--------- 73 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC---------
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC---------
Confidence 36899999999999999999999999999977 88899999999999999999999999999987665544
Q ss_pred CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCC---
Q psy2356 81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKV--- 153 (529)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~--- 153 (529)
|||++|+..|+.+++++|++++.+ +..|.|||++|+..|+.+++++|++.+.+...
T Consensus 74 -----------------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 136 (285)
T 1wdy_A 74 -----------------TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136 (285)
T ss_dssp -----------------CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred -----------------CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccc
Confidence 556677889999999999999766 66788999999999999999999988765332
Q ss_pred -----------CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHH
Q psy2356 154 -----------RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH 222 (529)
Q Consensus 154 -----------~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~ 222 (529)
+.++|+.|+..++.+++++|++ ..+.+++..+..|.||||+|+.
T Consensus 137 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------------------------~~~~~~~~~~~~g~t~l~~a~~ 191 (285)
T 1wdy_A 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLD-------------------------EMGADVNACDNMGRNALIHALL 191 (285)
T ss_dssp CCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH-------------------------TSCCCTTCCCTTSCCHHHHHHH
T ss_pred cHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH-------------------------hcCCCCCccCCCCCCHHHHHHH
Confidence 3344444444444444444443 1123333344444444444444
Q ss_pred cCC----HHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy2356 223 YGN----EGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ-NDANPDIPTVRGETPLHLAARANQTDIIRI 297 (529)
Q Consensus 223 ~~~----~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 297 (529)
.++ .+++++|+++|++++..+..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|++.|+.+++++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~ 271 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHH
Confidence 444 444444444444444444444444444444444444444444 344444444444444444444444444444
Q ss_pred HHHCCCCccc
Q psy2356 298 LLRNGAQVDA 307 (529)
Q Consensus 298 Ll~~g~~~~~ 307 (529)
|+++|++++.
T Consensus 272 Ll~~Ga~~~~ 281 (285)
T 1wdy_A 272 LCKRGASTDC 281 (285)
T ss_dssp HHHHSSCSCC
T ss_pred HHHcCCCCCc
Confidence 4444444443
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.4e-42 Score=313.67 Aligned_cols=262 Identities=26% Similarity=0.327 Sum_probs=184.2
Q ss_pred cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT-SKSGFTPLHIASHYGNEGVANILL 233 (529)
Q Consensus 155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~t~l~~A~~~~~~~~v~~Ll 233 (529)
.++|+.|+..|+.+++++|++.|.+ ++.. +..|.||||+|+..|+.+++++|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~--------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 59 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGAN--------------------------VNFQEEEGGWTPLHNAVQMSREDIVELLL 59 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCC--------------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCC--------------------------cccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 3566666666666666666654432 3333 445667777777777777777777
Q ss_pred hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc-----
Q psy2356 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDAR----- 308 (529)
Q Consensus 234 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----- 308 (529)
++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 60 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 139 (285)
T 1wdy_A 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139 (285)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH
Confidence 777777766677777777777777777777777777777776777777777777777777777777777666655
Q ss_pred -----cccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCC
Q psy2356 309 -----AREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHK 383 (529)
Q Consensus 309 -----~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 383 (529)
+..|.||||+|+..|+.+++++|++..+.++ +..+.
T Consensus 140 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------------------------------------~~~~~ 180 (285)
T 1wdy_A 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV---------------------------------------NACDN 180 (285)
T ss_dssp HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT---------------------------------------TCCCT
T ss_pred HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC---------------------------------------CccCC
Confidence 3444455555555555555555544333333 44455
Q ss_pred CCchHHHHHHHcCC----HHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHh-
Q psy2356 384 NGLTPLHLCAQEDR----VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE- 458 (529)
Q Consensus 384 ~g~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~- 458 (529)
.|.||||+|+..++ .+++++|++ +|++++.++..|.||||+|+..|+.+++++|++
T Consensus 181 ~g~t~l~~a~~~~~~~~~~~i~~~Ll~-------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 241 (285)
T 1wdy_A 181 MGRNALIHALLSSDDSDVEAITHLLLD-------------------HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241 (285)
T ss_dssp TSCCHHHHHHHCSCTTTHHHHHHHHHH-------------------TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred CCCCHHHHHHHccccchHHHHHHHHHH-------------------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 66677777777766 555555554 466778888889999999999999999999998
Q ss_pred CCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhcc
Q psy2356 459 HGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAK 500 (529)
Q Consensus 459 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~ 500 (529)
+|++++.+|..|.|||++|++.|+.+++++|+++++++...+
T Consensus 242 ~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 799999999999999999999999999999999998877543
No 8
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-43 Score=334.75 Aligned_cols=318 Identities=20% Similarity=0.223 Sum_probs=189.4
Q ss_pred CHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHHHHHHhcc
Q psy2356 98 TPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVS 177 (529)
Q Consensus 98 ~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~ 177 (529)
.+|..|+..|+.+.+..++++...-....+++.-+...|+.+++++++... .+..+.|+||.|+..+. +++++|+.
T Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~t~L~~Aa~~~~-~~~~~L~~-- 114 (373)
T 2fo1_E 39 HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEPESPIKLHTEAAGSY-AITEPITR-- 114 (373)
T ss_dssp --------------------------------------------------------CCCHHHHHHHSSS-CCCSCCST--
T ss_pred cccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccC-CCCCCccHHHHHhcCCc-hHHHHhcc--
Confidence 456666677777777777776554333344555666667777777766543 34455677777777443 44444332
Q ss_pred CCCCCCcccccccCCchhhHHHHhCCCCCCcCC-CCCCCHHHHHHHcCCHHHHHHHH--------hCCCCCcccCCCCCc
Q psy2356 178 CTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS-KSGFTPLHIASHYGNEGVANILL--------DKRADVNFSAKSGLT 248 (529)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~Ll--------~~g~~~~~~~~~~~~ 248 (529)
.+++..+ ..|.||||+|+..|+.+++++|+ +.|++++..+..|.|
T Consensus 115 --------------------------~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~T 168 (373)
T 2fo1_E 115 --------------------------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168 (373)
T ss_dssp --------------------------TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC
T ss_pred --------------------------ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 2334444 46777777777777766665554 566666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCcccccccCCcHHHHHHHcC--
Q psy2356 249 PLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNG---AQVDARAREGHTALSIAQKLG-- 323 (529)
Q Consensus 249 ~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~a~~~~-- 323 (529)
|||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++ ++++..+..|.||||+|+..+
T Consensus 169 pL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~ 248 (373)
T 2fo1_E 169 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR 248 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred HHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCc
Confidence 666666666666666666666666666666666666666666666666666665 566666666666666666665
Q ss_pred -ChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHH
Q psy2356 324 -YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAE 402 (529)
Q Consensus 324 -~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 402 (529)
+.+++++|++.. .+++..+ .......+..|.||||+|+..|+.++++
T Consensus 249 ~~~~~v~~Ll~~g-~~~~~~~-------------------------------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~ 296 (373)
T 2fo1_E 249 DQVASAKLLVEKG-AKVDYDG-------------------------------AARKDSEKYKGRTALHYAAQVSNMPIVK 296 (373)
T ss_dssp THHHHHHHHHHHT-CCSSCCS-------------------------------GGGTSSSSCCCCCTHHHHHSSCCHHHHH
T ss_pred chHHHHHHHHHCC-CCccccc-------------------------------ccccCcccccCCCHHHHHHHhCCHHHHH
Confidence 566666665432 1111110 0011345678999999999999999999
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCC
Q psy2356 403 LLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482 (529)
Q Consensus 403 ~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 482 (529)
+|++++ |++++.++..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+
T Consensus 297 ~Ll~~~------------------~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~ 358 (373)
T 2fo1_E 297 YLVGEK------------------GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358 (373)
T ss_dssp HHHHHS------------------CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred HHHHhc------------------CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence 998753 46788999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhcccch
Q psy2356 483 ISVEESLKGVTET 495 (529)
Q Consensus 483 ~~~~~~L~~~~~~ 495 (529)
.+++++|++++++
T Consensus 359 ~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 359 HNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHHTTC--
T ss_pred HHHHHHHHhcCcc
Confidence 9999999998764
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.7e-41 Score=321.51 Aligned_cols=293 Identities=26% Similarity=0.279 Sum_probs=195.0
Q ss_pred cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy2356 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234 (529)
Q Consensus 155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~ 234 (529)
.++|+.|+..|+.+.++.++. ..+.+++..+..|.||||+|+..|+.+++++|++
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~-------------------------~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 79 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLT-------------------------PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ 79 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCC-------------------------TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHH-------------------------hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 356777777777777777664 4566778888999999999999999999999999
Q ss_pred CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCc
Q psy2356 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHT 314 (529)
Q Consensus 235 ~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 314 (529)
+|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.+
T Consensus 80 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~ 159 (351)
T 3utm_A 80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS 159 (351)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHH
Q psy2356 315 ALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQ 394 (529)
Q Consensus 315 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 394 (529)
|+++|+..+..+.+.+.... .++..++..+..+.+..+.... ......+..|.||||+|+.
T Consensus 160 ~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~t~L~~A~~ 220 (351)
T 3utm_A 160 AVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALE------IINFKQPQSHETALHCAVA 220 (351)
T ss_dssp HHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTC------CTTCCCTTTCCCHHHHHHH
T ss_pred chHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhh------cccccCCCCCCCHHHHHHH
Confidence 99887666555555554321 2333444444444433331110 0112233344455555544
Q ss_pred cC---CHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCC
Q psy2356 395 ED---RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471 (529)
Q Consensus 395 ~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 471 (529)
.+ +.+++++|++ .|++++.++..|+||||+|+.+|+.++|++|+++|++++.+|..|.
T Consensus 221 ~~~~~~~~~~~~Ll~-------------------~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~ 281 (351)
T 3utm_A 221 SLHPKRKQVAELLLR-------------------KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ 281 (351)
T ss_dssp CCSTTHHHHHHHHHH-------------------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred HhCccHHHHHHHHHH-------------------cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 42 2233333332 2333344444444444444444444444444444444444444444
Q ss_pred CHHHHHHHhCCchHHHHhhcccchhhhccCCCCccccch
Q psy2356 472 TALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKVVA 510 (529)
Q Consensus 472 t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 510 (529)
||||+|+..|+.+++++|+++++++.+.+..+++.....
T Consensus 282 t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 282 TALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence 444444444444444444444444444444444444333
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.8e-42 Score=325.39 Aligned_cols=283 Identities=19% Similarity=0.245 Sum_probs=205.1
Q ss_pred HHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCC---CCCCcCHHHHHhhCCChHHHHHHHhccCC
Q psy2356 103 AMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTR---GKVRLPALHIAAKKDDTKAAKLLLEVSCT 179 (529)
Q Consensus 103 A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~l~~a~~~~~~~~~~~ll~~~~~ 179 (529)
+...|+.+++++++... .+..|.||||.|+..+. +++++|+..... ...+.|+||+|+..|+.+++++|+..
T Consensus 73 ~~~~g~~~~~~~~~~~~-~~~~g~t~L~~Aa~~~~-~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~--- 147 (373)
T 2fo1_E 73 NDFLGDFNHTNLQIPTE-PEPESPIKLHTEAAGSY-AITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH--- 147 (373)
T ss_dssp ----------------------CCCHHHHHHHSSS-CCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHH---
T ss_pred CCccccccccccccccC-CCCCCccHHHHHhcCCc-hHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHH---
Confidence 34445555555554432 23445566666655332 455555443211 23455666666666666666666531
Q ss_pred CCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCH
Q psy2356 180 VDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259 (529)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~ 259 (529)
..+.+++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 148 ---------------~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~ 212 (373)
T 2fo1_E 148 ---------------EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 212 (373)
T ss_dssp ---------------HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCH
T ss_pred ---------------HHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCH
Confidence 23455678888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCC---CCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCccc--------ccccCCcHHHHHHHcCCh
Q psy2356 260 NIVIYLLQND---ANPDIPTVRGETPLHLAARAN---QTDIIRILLRNGAQVDA--------RAREGHTALSIAQKLGYI 325 (529)
Q Consensus 260 ~~v~~Ll~~g---~~~~~~~~~~~t~l~~a~~~~---~~~~~~~Ll~~g~~~~~--------~~~~g~t~l~~a~~~~~~ 325 (529)
+++++|++.+ .+++..+..|.||||+|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.
T Consensus 213 ~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 292 (373)
T 2fo1_E 213 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292 (373)
T ss_dssp HHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH
T ss_pred HHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCH
Confidence 9999999998 799999999999999999998 89999999999999876 344566666666666666
Q ss_pred hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2356 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405 (529)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 405 (529)
+++++|++..+.++ +..+..|.||||+|+..|+.+++++|+
T Consensus 293 ~~v~~Ll~~~~~~~---------------------------------------n~~d~~g~TpL~~A~~~g~~~iv~~Ll 333 (373)
T 2fo1_E 293 PIVKYLVGEKGSNK---------------------------------------DKQDEDGKTPIMLAAQEGRIEVVMYLI 333 (373)
T ss_dssp HHHHHHHHHSCCCT---------------------------------------TCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCc---------------------------------------cCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 66666654433333 445667888888888888888888888
Q ss_pred hcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q psy2356 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV 463 (529)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 463 (529)
++ |++++.+|..|+|||++|+.+|+.++|++|+++|++.
T Consensus 334 ~~-------------------gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 334 QQ-------------------GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp HT-------------------TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred Hc-------------------CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 76 5667888999999999999999999999999998763
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=302.29 Aligned_cols=229 Identities=23% Similarity=0.279 Sum_probs=200.5
Q ss_pred CCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy2356 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHL 285 (529)
Q Consensus 206 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~ 285 (529)
.+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL 365 (529)
Q Consensus 286 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 365 (529)
|+..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|++..
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g------------------------------ 180 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG------------------------------ 180 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTT------------------------------
T ss_pred HHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCC------------------------------
Confidence 999999999999999999987544 4888999998888888888886532
Q ss_pred hhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHH
Q psy2356 366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSA 445 (529)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~ 445 (529)
.+.+..+..|.||||+|+..|+.+++++|+++|++ ++ .+..|.||||+|+
T Consensus 181 ----------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------------------~~-~~~~g~t~L~~A~ 230 (285)
T 3d9h_A 181 ----------GNIDHKISHLGTPLYLACENQQRACVKKLLESGAD-------------------VN-QGKGQDSPLHAVV 230 (285)
T ss_dssp ----------CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-------------------TT-CCBTTBCHHHHHH
T ss_pred ----------CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-------------------CC-CCCCCCCHHHHHH
Confidence 12244566788999999999999999988887554 45 3667999999999
Q ss_pred HcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcc-cchhh
Q psy2356 446 SEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV-TETLI 497 (529)
Q Consensus 446 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-~~~~~ 497 (529)
..|+.+++++|+++|++++.+|..|.|||++|+ ++.+++++|+++ +.+++
T Consensus 231 ~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 231 RTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 999999999999999999999999999999999 567999999998 55555
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=301.43 Aligned_cols=255 Identities=22% Similarity=0.245 Sum_probs=191.7
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHcC-----------CCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCC
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLKNN-----------VDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKG 70 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~~~-----------~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~ 70 (529)
+.|.|+||+||..|+.+.+..++..+ ..++..+..|+||||+|+..|+.++|++|++.|++++.++..|
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g 92 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH 92 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 57899999999999988888866532 2246678899999999999999999999999999998766655
Q ss_pred CchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHh
Q psy2356 71 NTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLE 146 (529)
Q Consensus 71 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~ 146 (529)
. |||++|+..|+.+++++|++.+.+ +..|.|||++|+..|+.+++++|++
T Consensus 93 ~--------------------------t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 146 (285)
T 3d9h_A 93 V--------------------------SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146 (285)
T ss_dssp C--------------------------CHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred C--------------------------CHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHH
Confidence 4 555567889999999999998765 6677888888888888888877776
Q ss_pred cCCCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCH
Q psy2356 147 NDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNE 226 (529)
Q Consensus 147 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~ 226 (529)
.+.+. +. +..|.||||+|+..|+.
T Consensus 147 ~g~~~-------------------------------------------------------~~-~~~g~t~L~~A~~~g~~ 170 (285)
T 3d9h_A 147 HGASV-------------------------------------------------------QP-ESDLASPIHEAARRGHV 170 (285)
T ss_dssp TTCCS-------------------------------------------------------SC-SCTTSCHHHHHHHHTCH
T ss_pred CCCCC-------------------------------------------------------CC-CCCCCCHHHHHHHcCCH
Confidence 54321 11 22478999999999999
Q ss_pred HHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc
Q psy2356 227 GVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306 (529)
Q Consensus 227 ~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 306 (529)
+++++|++.|++++..+..|.|||++|+..|+.+++++|++.|++++. +..|.||||+|+..++.+++++|+++|++++
T Consensus 171 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 171 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQ 249 (285)
T ss_dssp HHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 999999999999999999999999999999999999999999999985 7889999999999999999999999999999
Q ss_pred cccccCCcHHHHHHHcCChhHHHHhhhhccccccc
Q psy2356 307 ARAREGHTALSIAQKLGYISVEESLGAAERSQLKK 341 (529)
Q Consensus 307 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~ 341 (529)
.+|..|.||+++|+ ++.+++++|++.....+..
T Consensus 250 ~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 250 AKNAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp CCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred CcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 99999999999998 5578999998876655543
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=299.50 Aligned_cols=217 Identities=26% Similarity=0.336 Sum_probs=143.7
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF 82 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~ 82 (529)
+|.||||.||..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t---------- 71 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT---------- 71 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC----------
Confidence 6899999999999999999999999999999999999999999999999999999999999877655444
Q ss_pred cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC---CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHH
Q psy2356 83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR---GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALH 159 (529)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~ 159 (529)
||++|+..|+.+++++|++.+++ +..+.|||++|+..|+.+++++|++
T Consensus 72 ----------------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------------- 122 (261)
T 2xai_A 72 ----------------PLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA------------- 122 (261)
T ss_dssp ----------------HHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHH-------------
T ss_pred ----------------HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH-------------
Confidence 44456777888888888877654 2223333333333333333333332
Q ss_pred HHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Q psy2356 160 IAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV 239 (529)
Q Consensus 160 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~ 239 (529)
.|.+++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 123 ------------------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 123 ------------------------------------------YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp ------------------------------------------TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred ------------------------------------------cCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 12223344445556666666666666666666666655
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy2356 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303 (529)
Q Consensus 240 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~ 303 (529)
+. +..|.||||+|+..++.+++++|++.|++++.+|..|.||+|+|+..+ +++++|++++.
T Consensus 161 ~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~ 221 (261)
T 2xai_A 161 NQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREG 221 (261)
T ss_dssp TC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-C
T ss_pred CC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccC
Confidence 53 455556666666666666666666666666666666666666665433 35555555543
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.2e-40 Score=294.55 Aligned_cols=234 Identities=30% Similarity=0.370 Sum_probs=143.2
Q ss_pred CCCcCCCCCCCHHHHHHHcC-------------CHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy2356 205 NPDVTSKSGFTPLHIASHYG-------------NEGVANILLDKRADVNF-SAKSGLTPLHVASFMGCMNIVIYLLQNDA 270 (529)
Q Consensus 205 ~~~~~~~~~~t~l~~A~~~~-------------~~~~v~~Ll~~g~~~~~-~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~ 270 (529)
+++.++..|.||||+|+..| +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 46677778888888888876 55666666666665533 35556666666666666666666666666
Q ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcH
Q psy2356 271 NPDIPTVRGETPLHLAARANQTDIIRILLRNGA-QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTA 349 (529)
Q Consensus 271 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 349 (529)
+++..+..|.||||+|+..|+.+++++|+++|. +++..+..|.||||+|+..|+.+++++|++.
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------- 146 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--------------- 146 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT---------------
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc---------------
Confidence 666666666666666666666666666666554 5555555555555555555555555555432
Q ss_pred HHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCC
Q psy2356 350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAK 429 (529)
Q Consensus 350 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~ 429 (529)
..+.+..+..|.||||+|+..|+.+++++|+++ |++
T Consensus 147 -------------------------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------ga~ 182 (253)
T 1yyh_A 147 -------------------------HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-------------------GAN 182 (253)
T ss_dssp -------------------------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-------------------TCC
T ss_pred -------------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCC
Confidence 122345667789999999999999888888876 556
Q ss_pred CCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497 (529)
Q Consensus 430 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 497 (529)
++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.|+.+|+++|........
T Consensus 183 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~~ 250 (253)
T 1yyh_A 183 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC------
T ss_pred CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhcc
Confidence 68888899999999999999999999999999999999999999999999999999999998876554
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.5e-40 Score=314.39 Aligned_cols=245 Identities=21% Similarity=0.290 Sum_probs=146.1
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
.+|.||||.||..|+.++|++|++.|++++..|..|.||||+|+..|+.++|++|+++|++.+..
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--------------- 82 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW--------------- 82 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB---------------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc---------------
Confidence 46899999999999999999999999999999999999999999999999999999999966532
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHH
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIA 161 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a 161 (529)
.|.|||++|+..|+.+++++|++.+.... ..+-..........+.. +.....+..+.|+|++|
T Consensus 83 -------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~g~t~L~~A 145 (364)
T 3ljn_A 83 -------------HGQKPIHLAVMANKTDLVVALVEGAKERG--QMPESLLNECDEREVNE--IGSHVKHCKGQTALHWC 145 (364)
T ss_dssp -------------TTBCHHHHHHHTTCHHHHHHHHHHHHHHT--CCHHHHHTCCCCCCEEE--ETTEEEEESCCCHHHHH
T ss_pred -------------CCCCHHHHHHHcCCHHHHHHHHHhccccC--CCHHHHHhhcchHhhhh--hccccCCCCCCCHHHHH
Confidence 25677778899999999999998732100 01100000000000000 00000111233344444
Q ss_pred hhCC--ChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-
Q psy2356 162 AKKD--DTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD- 238 (529)
Q Consensus 162 ~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~- 238 (529)
+..| +.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 146 ~~~g~~~~~~v~~Ll~~--------------------------ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 199 (364)
T 3ljn_A 146 VGLGPEYLEMIKILVQL--------------------------GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK 199 (364)
T ss_dssp HHSCGGGHHHHHHHHHH--------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS
T ss_pred HHcCCchHHHHHHHHHc--------------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Confidence 4443 33444444422 223334444455555555555555555555555554
Q ss_pred ----CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy2356 239 ----VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304 (529)
Q Consensus 239 ----~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 304 (529)
++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 200 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence 555555555555555555555555555555555555555555555555555555555555555443
No 16
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.2e-39 Score=296.91 Aligned_cols=260 Identities=22% Similarity=0.239 Sum_probs=190.2
Q ss_pred CCCchhHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHH
Q psy2356 1 SGEGHTSFLRAARAGHLDKIIEHLKNNVD---INTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIA 77 (529)
Q Consensus 1 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a 77 (529)
+++|.||||.||..|+.++|++|++.|.+ ++..+..|+||||+|+..|+.++|++|+++|++++.++..|.|
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t----- 80 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT----- 80 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC-----
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-----
Confidence 46899999999999999999999999888 7889999999999999999999999999999999887766555
Q ss_pred hhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356 78 SLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 157 (529)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 157 (529)
||++|+..|+.+++++|+++++.............. .........++
T Consensus 81 ---------------------pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 127 (282)
T 1oy3_D 81 ---------------------ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS------------QDCTPDTSHAP 127 (282)
T ss_dssp ---------------------HHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------
T ss_pred ---------------------HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcc------------cccCcchhcch
Confidence 555667899999999999998774332221111100 00111122233
Q ss_pred HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy2356 158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237 (529)
Q Consensus 158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~ 237 (529)
+..++..+....... .+...+.+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus 128 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 182 (282)
T 1oy3_D 128 AAVDSQPNPENEEEP-------------------------RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182 (282)
T ss_dssp -----------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred hhhccccccchhhhh-------------------------hhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence 333333322221111 1123445667788899999999999999999999999999
Q ss_pred CCcccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHH
Q psy2356 238 DVNFSAKS-GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316 (529)
Q Consensus 238 ~~~~~~~~-~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 316 (529)
+++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||+
T Consensus 183 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl 262 (282)
T 1oy3_D 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262 (282)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------
T ss_pred CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccc
Confidence 99998854 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC
Q psy2356 317 SIAQKLG 323 (529)
Q Consensus 317 ~~a~~~~ 323 (529)
++|....
T Consensus 263 ~~a~~~~ 269 (282)
T 1oy3_D 263 SSSGSDS 269 (282)
T ss_dssp -------
T ss_pred cccCCcc
Confidence 9987654
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.5e-39 Score=287.91 Aligned_cols=231 Identities=28% Similarity=0.389 Sum_probs=165.8
Q ss_pred CCCCCCCCCCChHHHHHHHcC-------------ChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccccccC
Q psy2356 28 VDINTANANGLNALHLASKDG-------------HLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQG 94 (529)
Q Consensus 28 ~~~~~~~~~g~t~L~~A~~~g-------------~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~ 94 (529)
+|+|.+|..|+||||+|+..| +.+++++|++.|++++.. .+.
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~-------------------------~d~ 55 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-------------------------TDR 55 (253)
T ss_dssp ---------------------------------------------------C-------------------------CCT
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccc-------------------------cCC
Confidence 367888889999999999877 899999999999887532 233
Q ss_pred CCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChHHH
Q psy2356 95 DGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170 (529)
Q Consensus 95 ~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~~~ 170 (529)
.|.||||+|+..|+.+++++|++.+++ +..|.|||++|+..|+.+++++|++.+.
T Consensus 56 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--------------------- 114 (253)
T 1yyh_A 56 TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA--------------------- 114 (253)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT---------------------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---------------------
Confidence 455667777889999999999988765 5667788888888777777777776432
Q ss_pred HHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHH
Q psy2356 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPL 250 (529)
Q Consensus 171 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l 250 (529)
.+++..+..|.||||+|+..++.+++++|++.|++++..+..|.|||
T Consensus 115 ---------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 115 ---------------------------------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161 (253)
T ss_dssp ---------------------------------SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred ---------------------------------CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 13455677889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHH
Q psy2356 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEES 330 (529)
Q Consensus 251 ~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 330 (529)
|+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..|+.+++++
T Consensus 162 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccc
Q psy2356 331 LGAAERS 337 (529)
Q Consensus 331 l~~~~~~ 337 (529)
|....+.
T Consensus 242 l~~~~~~ 248 (253)
T 1yyh_A 242 LDLEHHH 248 (253)
T ss_dssp HHC----
T ss_pred HHHHhhh
Confidence 9765543
No 18
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=9.1e-39 Score=288.24 Aligned_cols=250 Identities=23% Similarity=0.237 Sum_probs=202.6
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2356 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ 291 (529)
Q Consensus 212 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~ 291 (529)
+|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhH
Q psy2356 292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTET 371 (529)
Q Consensus 292 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~ 371 (529)
.+++++|+++|++++. +..|.||+|+|+..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|.+.
T Consensus 82 ~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--- 156 (261)
T 2xai_A 82 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLES--- 156 (261)
T ss_dssp HHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc---
Confidence 9999999999999885 44689999999999999999999875 456777777888888888888888888777332
Q ss_pred HHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHH
Q psy2356 372 LIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451 (529)
Q Consensus 372 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~ 451 (529)
..+.+ .+..|.||||+|+..|+.+++++|+++ |+|++.+|..|+|||++|+.++ +
T Consensus 157 ---g~~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-------------------gad~~~~d~~g~tpl~~A~~~~--~ 211 (261)
T 2xai_A 157 ---GADVN-QGKGQDSPLHAVARTASEELACLLMDF-------------------GADTQAKNAEGKRPVELVPPES--P 211 (261)
T ss_dssp ---TCCTT-CCBTTBCHHHHHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTSCCGGGGSCTTC--T
T ss_pred ---CCCCC-CCCCCCChHHHHHHcCCHHHHHHHHHc-------------------CCCCCCcCCCCCChhhhccccc--c
Confidence 11122 366777888888888877777777765 4455777777888888887654 4
Q ss_pred HHHHHHhCCCC--------CcchhhcCCCHHHHHHHhCCchHHHHhhc
Q psy2356 452 MSAMLLEHGAD--------VSHAAKEGHTALSIAQKLGYISVEESLKG 491 (529)
Q Consensus 452 ~v~~Ll~~g~~--------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 491 (529)
++++|++++.. +.++|..|.|++|+|.+....+.++.++.
T Consensus 212 ~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 212 LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp HHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 77888877654 34567778888888777766665555543
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4e-38 Score=280.44 Aligned_cols=228 Identities=26% Similarity=0.345 Sum_probs=190.3
Q ss_pred CCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLH 284 (529)
Q Consensus 205 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~ 284 (529)
+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++.|++++..+..|.||||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHCC-CCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHH
Q psy2356 285 LAARANQTDIIRILLRNG-AQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363 (529)
Q Consensus 285 ~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 363 (529)
+|+..|+.+++++|+++| .+++..+..|.||+|+|+..++.+++++|++.. .
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~-------------------------- 135 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-S-------------------------- 135 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C--------------------------
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-C--------------------------
Confidence 888888888888888887 777777788888888888888888888876532 1
Q ss_pred HhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHH
Q psy2356 364 SLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443 (529)
Q Consensus 364 ~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~ 443 (529)
+.+..+..|.||||+|+..|+.+++++|+++ |++++.++..|.||||+
T Consensus 136 -------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------------------g~~~~~~~~~g~t~L~~ 183 (237)
T 3b7b_A 136 -------------DINIRDNEENICLHWAAFSGCVDIAEILLAA-------------------KCDLHAVNIHGDSPLHI 183 (237)
T ss_dssp -------------CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT-------------------TCCTTCCCTTCCCHHHH
T ss_pred -------------CCCccCCCCCCHHHHHHHCCCHHHHHHHHHc-------------------CCCCCCcCCCCCCHHHH
Confidence 1234566788999999999999888888876 45668888889999999
Q ss_pred HHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhc
Q psy2356 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKG 491 (529)
Q Consensus 444 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 491 (529)
|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+.+..+++
T Consensus 184 A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred HHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999866555544
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.1e-38 Score=285.05 Aligned_cols=229 Identities=26% Similarity=0.335 Sum_probs=187.0
Q ss_pred CcCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy2356 207 DVTSKSGFTPLHIASHYGNEGVANILLD----KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP 282 (529)
Q Consensus 207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 282 (529)
+.++..|.||||+|+..|+.+++++|++ .|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 3466788889999999898888888886 788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHCCC----CcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCc
Q psy2356 283 LHLAARANQTDIIRILLRNGA----QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGY 358 (529)
Q Consensus 283 l~~a~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~ 358 (529)
||+|+..|+.+++++|++++. +++..+..|.||||+|+..|+.+++++|++...
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------------------- 140 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA---------------------- 140 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC----------------------
Confidence 888888888888888888876 677777777788888887777777777755321
Q ss_pred hhHHHHhhhhhhHHHHhhcCCCCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCC
Q psy2356 359 ISVEESLKGVTETLIIAKGDGEKH-KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAG 437 (529)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g 437 (529)
+.+..+ ..|.||||+|+..|+.+++++|+++ |++++.++..|
T Consensus 141 ------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------g~~~~~~~~~g 183 (241)
T 1k1a_A 141 ------------------DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-------------------GANVNAQMYSG 183 (241)
T ss_dssp ------------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCBCTTS
T ss_pred ------------------CcccccccCCCcHHHHHHHcCCHHHHHHHHHc-------------------CCCCCCcCCCC
Confidence 112233 5688999999999999988888876 55668888899
Q ss_pred CCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356 438 FTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE 494 (529)
Q Consensus 438 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 494 (529)
.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.++++.|.+.+.
T Consensus 184 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 999999999999999999999999999999999999999999999999999987654
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.4e-38 Score=290.08 Aligned_cols=248 Identities=26% Similarity=0.310 Sum_probs=146.3
Q ss_pred CcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL 283 (529)
Q Consensus 207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l 283 (529)
+..+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 56788999999999999999999999999988 788889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCccccc-------------ccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHH
Q psy2356 284 HLAARANQTDIIRILLRNGAQVDARA-------------REGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350 (529)
Q Consensus 284 ~~a~~~~~~~~~~~Ll~~g~~~~~~~-------------~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 350 (529)
|+|+..|+.+++++|+++|++..... ..+.++++.+...+.......++......++..+..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 99999999999999999987753322 12333444444433333333333333444444555555555
Q ss_pred HHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCC
Q psy2356 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAK 429 (529)
Q Consensus 351 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~ 429 (529)
|+|+..|+.+++++|.+. ..+.+..+. .|.||||+|+..|+.+++++|+++ |++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-------------------gad 217 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDA------GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-------------------GAD 217 (282)
T ss_dssp HHHHHTTCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-------------------TCC
T ss_pred HHHHHcCCHHHHHHHHHc------CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-------------------CCC
Confidence 555555555555544211 111122222 255555555555555444444443 233
Q ss_pred CCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHH
Q psy2356 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479 (529)
Q Consensus 430 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 479 (529)
++.++..|+||||+|+.+|+.+++++|+++|++++.+|..|.||+++|..
T Consensus 218 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------------
T ss_pred CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence 34444445555555555555555555555555555555555555555443
No 22
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.4e-39 Score=307.57 Aligned_cols=271 Identities=20% Similarity=0.216 Sum_probs=230.1
Q ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL 283 (529)
Q Consensus 204 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l 283 (529)
.+.+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. ..|.|||
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L 88 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPI 88 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHH
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHH
Confidence 34456677889999999999999999999999999999999999999999999999999999999995554 5789999
Q ss_pred HHHHHcCCHHHHHHHHHC----CCCccc-----------------ccccCCcHHHHHHHcC--ChhHHHHhhhhcccccc
Q psy2356 284 HLAARANQTDIIRILLRN----GAQVDA-----------------RAREGHTALSIAQKLG--YISVEESLGAAERSQLK 340 (529)
Q Consensus 284 ~~a~~~~~~~~~~~Ll~~----g~~~~~-----------------~~~~g~t~l~~a~~~~--~~~~~~~l~~~~~~~~~ 340 (529)
|+|+..|+.+++++|+++ |++++. .+..|.||||+|+..| +.+++++|++. +.+++
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~ 167 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPT 167 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTT
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCc
Confidence 999999999999999998 888777 8889999999999999 99999999887 67888
Q ss_pred cCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHH
Q psy2356 341 KRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA 420 (529)
Q Consensus 341 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 420 (529)
..+..|.||||+|+..|+.+++++|.+..... .....+..+..|.||||+|+..|+.+++++|+++
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------------- 233 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM------------- 233 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-------------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-------------
Confidence 99999999999999999999999993321100 0001456788899999999999999999888876
Q ss_pred HHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcc------------hhhcCCCHHHHHHHhCCchHHHH
Q psy2356 421 TTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH------------AAKEGHTALSIAQKLGYISVEES 488 (529)
Q Consensus 421 ~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------~~~~g~t~l~~A~~~~~~~~~~~ 488 (529)
|+|++.++..|.||||+|+..|+.++|++|+++|++++. .+..++|+++.|+..++.+.+..
T Consensus 234 ------gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ 307 (364)
T 3ljn_A 234 ------GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307 (364)
T ss_dssp ------TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred ------CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence 556688888999999999999999999999999877533 56678999999999887777776
Q ss_pred hhcccchhh
Q psy2356 489 LKGVTETLI 497 (529)
Q Consensus 489 L~~~~~~~~ 497 (529)
|+....+..
T Consensus 308 ll~~~~~~~ 316 (364)
T 3ljn_A 308 LLQEKLDEV 316 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.7e-38 Score=282.47 Aligned_cols=227 Identities=24% Similarity=0.335 Sum_probs=182.1
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHH
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLK----NNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIA 77 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a 77 (529)
++|.||||.||..|+.++|++|++ .|.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t----- 81 (241)
T 1k1a_A 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT----- 81 (241)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-----
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-----
Confidence 678999999999999999999987 68888988999999999999999999999999999888766544333
Q ss_pred hhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356 78 SLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 157 (529)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 157 (529)
||++|+..|+.+++++|++.+...
T Consensus 82 ---------------------~l~~A~~~~~~~~~~~Ll~~~~~~----------------------------------- 105 (241)
T 1k1a_A 82 ---------------------AAHLACEHRSPTCLRALLDSAAPG----------------------------------- 105 (241)
T ss_dssp ---------------------HHHHHHHTTCHHHHHHHHHHSCTT-----------------------------------
T ss_pred ---------------------HHHHHHHcCCHHHHHHHHHcCCCc-----------------------------------
Confidence 344445566666666666554311
Q ss_pred HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q psy2356 158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237 (529)
Q Consensus 158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~ 237 (529)
+.+++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 106 ---------------------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 140 (241)
T 1k1a_A 106 ---------------------------------------------TLDLEARNYDGLTALHVAVNTECQETVQLLLERGA 140 (241)
T ss_dssp ---------------------------------------------SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---------------------------------------------cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 11234455677888888888888888888888888
Q ss_pred CCcccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHH
Q psy2356 238 DVNFSA-KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316 (529)
Q Consensus 238 ~~~~~~-~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 316 (529)
+++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+
T Consensus 141 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl 220 (241)
T 1k1a_A 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220 (241)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred CcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHH
Confidence 888877 7788899999888899999999988888888888888999999988999999999999988888888888898
Q ss_pred HHHHHcCChhHHHHhhhh
Q psy2356 317 SIAQKLGYISVEESLGAA 334 (529)
Q Consensus 317 ~~a~~~~~~~~~~~l~~~ 334 (529)
++|+..|+.++++.|.++
T Consensus 221 ~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 221 MVARSRRVIDILRGKATR 238 (241)
T ss_dssp TTCSSHHHHHHHTC----
T ss_pred HHHHhcCcHHHHhhhccC
Confidence 888888888888888654
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.3e-37 Score=277.17 Aligned_cols=126 Identities=28% Similarity=0.490 Sum_probs=110.1
Q ss_pred CcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy2356 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286 (529)
Q Consensus 207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 286 (529)
+..+..|.||||+|+..++.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|
T Consensus 105 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 184 (237)
T 3b7b_A 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA 184 (237)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 44556778899999999999999999999999888888899999999999999999999999999998888899999999
Q ss_pred HHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhh
Q psy2356 287 ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332 (529)
Q Consensus 287 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~ 332 (529)
++.++.+++++|+++|++++.++..|.||+++|+..++...+..+.
T Consensus 185 ~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988999999999998888886666553
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.4e-38 Score=277.19 Aligned_cols=226 Identities=24% Similarity=0.272 Sum_probs=203.2
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356 212 SGFTPLHIASHYGNEGVANILLDKRAD-VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290 (529)
Q Consensus 212 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 290 (529)
.+.++|+.|+..|+.+.+++|++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 467999999999999999999987654 5777889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhh
Q psy2356 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTE 370 (529)
Q Consensus 291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~ 370 (529)
+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.. .
T Consensus 85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~--------------------------------- 130 (231)
T 3aji_A 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-A--------------------------------- 130 (231)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C---------------------------------
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-C---------------------------------
Confidence 999999999999999999999999999999999999999996532 1
Q ss_pred HHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcH
Q psy2356 371 TLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA 450 (529)
Q Consensus 371 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~ 450 (529)
+.+..+..|.||||+|+..|+.+++++|+++ |++++.++..|+||||+|+..|+.
T Consensus 131 ------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~ 185 (231)
T 3aji_A 131 ------NPDAKDHYDATAMHRAAAKGNLKMVHILLFY-------------------KASTNIQDTEGNTPLHLACDEERV 185 (231)
T ss_dssp ------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-------------------TCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred ------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-------------------CCCccccCCCCCCHHHHHHHCCCH
Confidence 1234456788999999999999888888876 556688888999999999999999
Q ss_pred HHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchh
Q psy2356 451 DMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETL 496 (529)
Q Consensus 451 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 496 (529)
+++++|+++|++++.+|..|.||+++|...++.+++++|+++++++
T Consensus 186 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 186 EEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 9999999999999999999999999999999999999999987754
No 26
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=8e-39 Score=295.64 Aligned_cols=237 Identities=28% Similarity=0.360 Sum_probs=204.1
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356 211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290 (529)
Q Consensus 211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 290 (529)
..+.|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g 117 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhh
Q psy2356 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTE 370 (529)
Q Consensus 291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~ 370 (529)
+.+++++|+++|++++..+..|.||+++|+..++.+++++++...+.+++.....+.+++...+ ..++
T Consensus 118 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-------~~~l----- 185 (299)
T 1s70_B 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA-------RQWL----- 185 (299)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH-------HHHH-----
T ss_pred CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHH-------HHHH-----
Confidence 9999999999999999999999999999999999999999987766554433222222222111 1111
Q ss_pred HHHHh-hcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCc
Q psy2356 371 TLIIA-KGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449 (529)
Q Consensus 371 ~~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~ 449 (529)
... ......+..|.||||+|+..|+.+++++|+++ |++++.++..|.||||+|+..|+
T Consensus 186 --~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------g~d~~~~d~~g~tpL~~A~~~~~ 244 (299)
T 1s70_B 186 --NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-------------------RYDVNIKDYDGWTPLHAAAHWGK 244 (299)
T ss_dssp --HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-------------------TCCTTCCCTTCCCHHHHHHHTTC
T ss_pred --hccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-------------------CCCCCCcCCCCCcHHHHHHhcCC
Confidence 111 11234567899999999999999999988886 55668888899999999999999
Q ss_pred HHHHHHHHhCCCCCcchhhcCCCHHHHHHHh
Q psy2356 450 ADMSAMLLEHGADVSHAAKEGHTALSIAQKL 480 (529)
Q Consensus 450 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 480 (529)
.++|++|+++|++++.+|..|.||+++|.+.
T Consensus 245 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 245 EEACRILVENLCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999764
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6.5e-37 Score=271.46 Aligned_cols=221 Identities=26% Similarity=0.384 Sum_probs=146.0
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKNNV-DINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
.+.|+||.||..|+++.++++++.+. .++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t--------- 75 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS--------- 75 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC---------
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCC---------
Confidence 57899999999999999999998754 46788999999999999999999999999999998876654443
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHH
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIA 161 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a 161 (529)
||++|+..|+.+++++|++++.+
T Consensus 76 -----------------~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------------- 98 (231)
T 3aji_A 76 -----------------PLHIAASAGXDEIVKALLVKGAH---------------------------------------- 98 (231)
T ss_dssp -----------------HHHHHHHHTCHHHHHHHHHTTCC----------------------------------------
T ss_pred -----------------HHHHHHHcCHHHHHHHHHHcCCC----------------------------------------
Confidence 44455667777777777766543
Q ss_pred hhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcc
Q psy2356 162 AKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNF 241 (529)
Q Consensus 162 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~ 241 (529)
++..+..|.||||+|+..++.+++++|++.|++++.
T Consensus 99 --------------------------------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 134 (231)
T 3aji_A 99 --------------------------------------------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134 (231)
T ss_dssp --------------------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred --------------------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 112233445555555555555555555555555555
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHH
Q psy2356 242 SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321 (529)
Q Consensus 242 ~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~ 321 (529)
.+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+.
T Consensus 135 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 214 (231)
T 3aji_A 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCChhHHHHhhh
Q psy2356 322 LGYISVEESLGA 333 (529)
Q Consensus 322 ~~~~~~~~~l~~ 333 (529)
.++.+++++|.+
T Consensus 215 ~~~~~i~~lL~~ 226 (231)
T 3aji_A 215 GLGLILKRLAEG 226 (231)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHcc
Confidence 555555555543
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=285.43 Aligned_cols=228 Identities=25% Similarity=0.307 Sum_probs=165.9
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--------CcccCCCCCcHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCC
Q psy2356 209 TSKSGFTPLHIASHYGNEGVANILLDKRAD--------VNFSAKSGLTPLHVASFMGCM-NIVIYLLQNDANPDIPTVRG 279 (529)
Q Consensus 209 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~--------~~~~~~~~~~~l~~a~~~~~~-~~v~~Ll~~g~~~~~~~~~~ 279 (529)
++..+.++|+.|+..|+.++|++|++.|.+ ++..+..+.|||+.|+..+.. .++++|++.|++++..+..|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 444567899999999999999999998875 345667788999999887765 47899999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCch
Q psy2356 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI 359 (529)
Q Consensus 280 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 359 (529)
.||||+|+..|+.+++++|+++|++++..+..|.||++.|+..++.+++++|++.. .+
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~--------------------- 144 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN-AK--------------------- 144 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CC---------------------
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCC-CC---------------------
Confidence 99999999999999999999999999999999999999999999999999886532 22
Q ss_pred hHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCC
Q psy2356 360 SVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439 (529)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t 439 (529)
.+..+..|.||||+|+..|+.+++++|+++ |+|+|.++..|+|
T Consensus 145 ------------------~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-------------------gadvn~~~~~g~t 187 (269)
T 4b93_B 145 ------------------PNKKDLSGNTPLIYACSGGHHELVALLLQH-------------------GASINASNNKGNT 187 (269)
T ss_dssp ------------------SCCCCTTCCCHHHHHHHTTCGGGHHHHHHT-------------------TCCTTCBCTTSCB
T ss_pred ------------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-------------------CCCCCccccCCCc
Confidence 244566788888888888888888888776 5567888889999
Q ss_pred HHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497 (529)
Q Consensus 440 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 497 (529)
|||+|+..|+.++|++|+++|+|++.+|..|+|||++|++.+ +++++|........
T Consensus 188 ~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~--~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 188 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS--KIMELLQVVPSCVA 243 (269)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC--HHHHHTTC------
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC--cHHHHHHHHHHhch
Confidence 999999999999999999999999999999999999998765 46666655444433
No 29
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.4e-37 Score=282.15 Aligned_cols=225 Identities=17% Similarity=0.148 Sum_probs=191.9
Q ss_pred CCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLH 284 (529)
Q Consensus 205 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~ 284 (529)
+++.++..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~ 100 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY 100 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence 467788889999999999999999999999999888774 889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCcccccccC-CcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHH
Q psy2356 285 LAARANQTDIIRILLRNGAQVDARAREG-HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363 (529)
Q Consensus 285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g-~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 363 (529)
+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|++....
T Consensus 101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------- 154 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-------------------------- 154 (285)
T ss_dssp HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT--------------------------
T ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc--------------------------
Confidence 9999999999999999999999988888 7999999999999999988654321
Q ss_pred HhhhhhhHHHHhhcCCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCH-H
Q psy2356 364 SLKGVTETLIIAKGDGEKHK-NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP-L 441 (529)
Q Consensus 364 ~l~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~-L 441 (529)
..+. .|.||||+|+..|+.+++++|+++ |++++.++..|+|| |
T Consensus 155 ----------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------gad~n~~~~~g~t~~L 199 (285)
T 3kea_A 155 ----------------TFDLAILLSCIHITIKNGHVDMMILLLDY-------------------MTSTNTNNSLLFIPDI 199 (285)
T ss_dssp ----------------TCCCSTHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHTCTTCCCBCCTTH
T ss_pred ----------------cccccCCccHHHHHHHcChHHHHHHHHHc-------------------CCCCCcccCCCCChHH
Confidence 1122 677889999999988888888775 45667888889897 9
Q ss_pred HHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhc
Q psy2356 442 HLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIA 499 (529)
Q Consensus 442 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~ 499 (529)
|+|+..|+.+++++|+++|++++..|. .|+..|+.+++++|++++.++...
T Consensus 200 ~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 200 KLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp HHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999988773 557788999999999998877643
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=268.42 Aligned_cols=232 Identities=25% Similarity=0.297 Sum_probs=197.1
Q ss_pred CcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHH
Q psy2356 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV-RGETPLHL 285 (529)
Q Consensus 207 ~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~~~t~l~~ 285 (529)
+..+..+.++|+.|+..|+.+++++|++.|++++..+..|.|||+.|+..|+.+++++|++.|.+++.... .|.||||+
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 34566788999999999999999999999999999999999999999999999999999999998876554 48999999
Q ss_pred HHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL 365 (529)
Q Consensus 286 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 365 (529)
|+..|+.+++++|+++|++++..+..|.||+++|+..|+.+++++|++.. .++
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~-------------------------- 135 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDV-------------------------- 135 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCT--------------------------
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCc--------------------------
Confidence 99999999999999999999999999999999999999999999997542 222
Q ss_pred hhhhhHHHHhhcCCCCCCCCchHHHHHHHcCC-HHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCccc-CCCCHHHH
Q psy2356 366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR-VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV-AGFTPLHL 443 (529)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~-~g~t~L~~ 443 (529)
+..+..|.||||+|+..++ .+++++|+++ |++++..+. .|.||||+
T Consensus 136 -------------~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~-------------------~~~~~~~~~~~g~t~L~~ 183 (240)
T 3eu9_A 136 -------------DMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-------------------NVSVNLGDKYHKNTALHW 183 (240)
T ss_dssp -------------TCCCTTSCCHHHHHHHHCCSSTTHHHHHHT-------------------TCCTTCCCTTTCCCHHHH
T ss_pred -------------cccCCCCCcHHHHHHHhCChHHHHHHHHhc-------------------CCCcchhhccCCCcHHHH
Confidence 3345566777777775554 5666666655 556677665 79999999
Q ss_pred HHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497 (529)
Q Consensus 444 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 497 (529)
|+..|+.+++++|+++|++++..|..|.|||++|++.|+.+++++|++.+....
T Consensus 184 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999999999876543
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=264.55 Aligned_cols=223 Identities=26% Similarity=0.369 Sum_probs=139.8
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
+.|.|+|+.||+.|+++++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++...
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------- 72 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG-------------- 72 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB--------------
T ss_pred cccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc--------------
Confidence 568889999999999999999999998888888889999999999999999999999888776432
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 157 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 157 (529)
+..+.|||++|+..|+.+++++|++.+.+ +..+.|||+.|+..|+.+++++|++.
T Consensus 73 -----------~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~---------- 131 (240)
T 3eu9_A 73 -----------GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK---------- 131 (240)
T ss_dssp -----------TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----------
T ss_pred -----------CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc----------
Confidence 22244555566666777777777666543 23333444444444443333333321
Q ss_pred HHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCC-HHHHHHHHhCC
Q psy2356 158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGN-EGVANILLDKR 236 (529)
Q Consensus 158 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~-~~~v~~Ll~~g 236 (529)
+.+++..+..|.||||+|+..++ .+++++|++.|
T Consensus 132 ---------------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~ 166 (240)
T 3eu9_A 132 ---------------------------------------------GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166 (240)
T ss_dssp ---------------------------------------------TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred ---------------------------------------------CCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence 22233344455566666554443 55555566666
Q ss_pred CCCcccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q psy2356 237 ADVNFSAK-SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304 (529)
Q Consensus 237 ~~~~~~~~-~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 304 (529)
++++..+. .|.||||.|+..|+.+++++|++.|++++..+..|.||+++|++.|+.+++++|++++.+
T Consensus 167 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 55555554 555566666666666666666655555555555556666666666666666666555543
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.7e-36 Score=262.98 Aligned_cols=212 Identities=30% Similarity=0.360 Sum_probs=147.3
Q ss_pred CchhhHHHHhCCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q psy2356 192 NAATGGYLIKNEHNPDVT-SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270 (529)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~-~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~ 270 (529)
+.++++++++.+.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+.
T Consensus 3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 82 (223)
T 2f8y_A 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82 (223)
T ss_dssp --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 445556666666666554 6677788888888888888888888888777777777888888888888888888887765
Q ss_pred -CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcH
Q psy2356 271 -NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTA 349 (529)
Q Consensus 271 -~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 349 (529)
+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||
T Consensus 83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~---------------------------------- 128 (223)
T 2f8y_A 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA---------------------------------- 128 (223)
T ss_dssp SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH----------------------------------
T ss_pred CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcH----------------------------------
Confidence 677777777788888888888888888887777766655555444
Q ss_pred HHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCC
Q psy2356 350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAK 429 (529)
Q Consensus 350 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~ 429 (529)
||+|+..|+.+++++|+++ |++
T Consensus 129 ---------------------------------------L~~A~~~~~~~~v~~Ll~~-------------------g~~ 150 (223)
T 2f8y_A 129 ---------------------------------------LHWAAAVNNVDAAVVLLKN-------------------GAN 150 (223)
T ss_dssp ---------------------------------------HHHHHHTTCHHHHHHHHHT-------------------TCC
T ss_pred ---------------------------------------HHHHHHcCCHHHHHHHHHc-------------------CCC
Confidence 4444455555555544443 344
Q ss_pred CCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccch
Q psy2356 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTET 495 (529)
Q Consensus 430 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 495 (529)
++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.++.+++++|++++..
T Consensus 151 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 151 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 556666677777777777777777777777777777777777777777777777777777766554
No 33
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=6.6e-36 Score=264.47 Aligned_cols=221 Identities=23% Similarity=0.291 Sum_probs=177.5
Q ss_pred chhHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356 4 GHTSFLRAARAGHLDKIIEHLKNNVDIN-TANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF 82 (529)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~ 82 (529)
|+||||.||+.|+.++|++|++.+.++. ..+..|+||||+|+..|+.+++++|+++|++++...
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------- 66 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD--------------- 66 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG---------------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc---------------
Confidence 7899999999999999999999887754 488999999999999999999999999996654321
Q ss_pred cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHh
Q psy2356 83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAA 162 (529)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~ 162 (529)
.. +..|.|||++|+..|+.+++++|++.+..
T Consensus 67 --------~~-----------------------------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------ 97 (228)
T 2dzn_A 67 --------YP-----------------------------DDSGWTPFHIACSVGNLEVVKSLYDRPLK------------ 97 (228)
T ss_dssp --------CC-----------------------------CTTSCCHHHHHHHHCCHHHHHHHHSSSSC------------
T ss_pred --------cC-----------------------------CCCCCCHHHHHHHcCCHHHHHHHHhCCCC------------
Confidence 01 22334444444444444444444432210
Q ss_pred hCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccc
Q psy2356 163 KKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS 242 (529)
Q Consensus 163 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~ 242 (529)
.+++..+..|.||||+|+..++.+++++|+++|++++..
T Consensus 98 -----------------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 136 (228)
T 2dzn_A 98 -----------------------------------------PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136 (228)
T ss_dssp -----------------------------------------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred -----------------------------------------cccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcccc
Confidence 123445667889999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCcccccccCCcHHHHHH
Q psy2356 243 AKSGLTPLHVASFMGCMNIVIYLLQND-ANPDIPTVRGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQ 320 (529)
Q Consensus 243 ~~~~~~~l~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~ 320 (529)
+..|.||||+|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|+ ++|++++..+..|.||+++|.
T Consensus 137 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence 999999999999999999999999998 999999999999999999999999999999 889999999999999999986
Q ss_pred HcCChhHHHHhh
Q psy2356 321 KLGYISVEESLG 332 (529)
Q Consensus 321 ~~~~~~~~~~l~ 332 (529)
.. +++++|.
T Consensus 217 ~~---~~~~~l~ 225 (228)
T 2dzn_A 217 NE---QVKKFFL 225 (228)
T ss_dssp ST---THHHHHH
T ss_pred HH---HHHHHHH
Confidence 54 4555553
No 34
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-37 Score=276.11 Aligned_cols=208 Identities=26% Similarity=0.364 Sum_probs=107.9
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHcCCC--------CCCCCCCCChHHHHHHHcCCh-hHHHHHHHCCCCCCCCCCCCCch
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKNNVD--------INTANANGLNALHLASKDGHL-HVVTELLSRGANVDSATKKGNTA 73 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~--------~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~ga~~~~~~~~~~~~ 73 (529)
++.|+|+.||..|++++|++|++.|.+ ++..+..|.|||++|+..++. .++++|++.|++++.++..|.||
T Consensus 10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~Tp 89 (269)
T 4b93_B 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSP 89 (269)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCH
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 467999999999999999999998765 455677899999999988775 58899999999998876655444
Q ss_pred HHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCC
Q psy2356 74 LHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDT 149 (529)
Q Consensus 74 l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~ 149 (529)
||+|+..|+.++|++|++.+++ +..|.||++.|+..++.+++++|++
T Consensus 90 --------------------------Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~--- 140 (269)
T 4b93_B 90 --------------------------LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD--- 140 (269)
T ss_dssp --------------------------HHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH---
T ss_pred --------------------------HHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH---
Confidence 4455677777777777776544 3334444444444444444443332
Q ss_pred CCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHH
Q psy2356 150 RGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA 229 (529)
Q Consensus 150 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v 229 (529)
.|.+++.++..|.||||+|+..|+.+++
T Consensus 141 ----------------------------------------------------~g~~~n~~d~~g~TpL~~A~~~g~~~~v 168 (269)
T 4b93_B 141 ----------------------------------------------------SNAKPNKKDLSGNTPLIYACSGGHHELV 168 (269)
T ss_dssp ----------------------------------------------------TTCCSCCCCTTCCCHHHHHHHTTCGGGH
T ss_pred ----------------------------------------------------CCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 1223334444555555555555555555
Q ss_pred HHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2356 230 NILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ 291 (529)
Q Consensus 230 ~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~ 291 (529)
++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++++
T Consensus 169 ~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 169 ALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 55555555555555555555555555555555555555555555555555555555555443
No 35
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-37 Score=289.54 Aligned_cols=259 Identities=17% Similarity=0.099 Sum_probs=208.8
Q ss_pred CCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccc-----------------CCCCCcHHHHH
Q psy2356 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS-----------------AKSGLTPLHVA 253 (529)
Q Consensus 191 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~-----------------~~~~~~~l~~a 253 (529)
...++++++++.|.+++..+..|.++++ |+.+++++|+++|++++.. .....+..+.+
T Consensus 30 ~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a 104 (327)
T 1sw6_A 30 FTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS 104 (327)
T ss_dssp CCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------C
T ss_pred hcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHH
Confidence 4556677888999999999999999977 9999999999999876541 11112334677
Q ss_pred HHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCC---hhHHH
Q psy2356 254 SFMGCMNIVIYLLQNDANPDI-PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY---ISVEE 329 (529)
Q Consensus 254 ~~~~~~~~v~~Ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~---~~~~~ 329 (529)
+..+..+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+ .++++
T Consensus 105 ~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~ 184 (327)
T 1sw6_A 105 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 184 (327)
T ss_dssp HHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred HHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHH
Confidence 777888999999999999999 89999999999999999999999999999999999999999999999999 78888
Q ss_pred HhhhhcccccccCCCCCCcHHHHHHH----hCchhHHHHhhhhhhHHHH--------------hhcCCCCCCCCchHHHH
Q psy2356 330 SLGAAERSQLKKRGREGHTALSIAQK----LGYISVEESLKGVTETLII--------------AKGDGEKHKNGLTPLHL 391 (529)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~g~t~L~~ 391 (529)
.|++....+++..+..|.||||+|+. .++.++++++.+....+.. ..+.+..+..|.||||.
T Consensus 185 ~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~ 264 (327)
T 1sw6_A 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 264 (327)
T ss_dssp HHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHH
T ss_pred HHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHH
Confidence 88887777889999999999999999 8999999999777554433 33446778889999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCC
Q psy2356 392 CAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471 (529)
Q Consensus 392 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 471 (529)
|+. +++|+++ +++.++..|+||||+|+..|+.++|++|+++|++++.+|..|.
T Consensus 265 a~~------~~~Ll~~---------------------~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~ 317 (327)
T 1sw6_A 265 NLD------LKWIIAN---------------------MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 317 (327)
T ss_dssp HCS------HHHHHHH---------------------TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred HHH------HHHHHHh---------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 985 6666654 4688899999999999999999999999999999999999999
Q ss_pred CHHHHHHHhC
Q psy2356 472 TALSIAQKLG 481 (529)
Q Consensus 472 t~l~~A~~~~ 481 (529)
||||+|++.|
T Consensus 318 TpL~~A~~~g 327 (327)
T 1sw6_A 318 RPVDFGAGLE 327 (327)
T ss_dssp CGGGGTCC--
T ss_pred CHHHHHHhcC
Confidence 9999998654
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=9.5e-36 Score=263.44 Aligned_cols=219 Identities=24% Similarity=0.311 Sum_probs=183.5
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCCC-CCCCCCcHHHHHHH
Q psy2356 213 GFTPLHIASHYGNEGVANILLDKRADVNF-SAKSGLTPLHVASFMGCMNIVIYLLQND--ANPDI-PTVRGETPLHLAAR 288 (529)
Q Consensus 213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~l~~a~~~~~~~~v~~Ll~~g--~~~~~-~~~~~~t~l~~a~~ 288 (529)
|.||||.|+..|+.+++++|++.+.++.. .+..|.||||+|+..|+.+++++|++.| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 57899999999999999999988877644 7888899999999999999999999998 44444 67788999999999
Q ss_pred cCCHHHHHHHHHCC--CCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhh
Q psy2356 289 ANQTDIIRILLRNG--AQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLK 366 (529)
Q Consensus 289 ~~~~~~~~~Ll~~g--~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~ 366 (529)
.|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|++.. .+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~---------------------------- 132 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-AS---------------------------- 132 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CC----------------------------
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CC----------------------------
Confidence 99999999999988 788888888888888888888888888886532 22
Q ss_pred hhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHH
Q psy2356 367 GVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSAS 446 (529)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~ 446 (529)
.+..+..|.||||+|+..|+.+++++|+++|. ++++.++..|+||||+|+.
T Consensus 133 -----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------------~~~~~~d~~g~t~L~~A~~ 183 (228)
T 2dzn_A 133 -----------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK------------------SAVNWQDKQGWTPLFHALA 183 (228)
T ss_dssp -----------SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC------------------CCSCCCCTTSCCHHHHHHH
T ss_pred -----------ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCc------------------ccccCcCCCCCCHHHHHHH
Confidence 24456678888999999999988888887641 5678888999999999999
Q ss_pred cCcHHHHHHHH-hCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356 447 EGHADMSAMLL-EHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV 492 (529)
Q Consensus 447 ~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 492 (529)
.|+.+++++|+ ++|++++.+|..|.||+++|.+ .+++++|+++
T Consensus 184 ~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~---~~~~~~l~~~ 227 (228)
T 2dzn_A 184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNN 227 (228)
T ss_dssp TTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS---TTHHHHHHTT
T ss_pred cCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH---HHHHHHHHhc
Confidence 99999999999 8899999999999999999964 4777877764
No 37
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-35 Score=273.45 Aligned_cols=231 Identities=27% Similarity=0.391 Sum_probs=152.1
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF 82 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~ 82 (529)
+|.|+|+.||..|++++|++|++.|++++..+..|.||||+|+..|+.++|++|+++|++++..+..|.|
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t---------- 108 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI---------- 108 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC----------
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc----------
Confidence 5789999999999999999999999999999999999999999999999999999999999877765554
Q ss_pred cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHH
Q psy2356 83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPAL 158 (529)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l 158 (529)
|||+|+..|+.+++++|++++++ +..|.|||++|+..++.+++++++....... ...
T Consensus 109 ----------------pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~---~~~ 169 (299)
T 1s70_B 109 ----------------PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI---EAA 169 (299)
T ss_dssp ----------------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH---HHH
T ss_pred ----------------HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCc---hhh
Confidence 55567889999999999999766 6778999999999999999998886432110 000
Q ss_pred HHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q psy2356 159 HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238 (529)
Q Consensus 159 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 238 (529)
...........+..++. .........+..|.||||+|+..|+.+++++|+++|++
T Consensus 170 ~~~~~~~~~~~~~~~l~-------------------------~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d 224 (299)
T 1s70_B 170 RKEEERIMLRDARQWLN-------------------------SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224 (299)
T ss_dssp HHHHHHHHHHHHHHHHH-------------------------HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred hhhhhhHHHHHHHHHHh-------------------------ccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence 00000000011111111 11111222333444555555555555555555555555
Q ss_pred CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA 287 (529)
Q Consensus 239 ~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 287 (529)
++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||+++|+
T Consensus 225 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273 (299)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 5555445555555555555555555555555555555555555555443
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.3e-35 Score=258.19 Aligned_cols=210 Identities=24% Similarity=0.332 Sum_probs=160.2
Q ss_pred CCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCcccccccccccc
Q psy2356 15 GHLDKIIEHLKNNVDINTA-NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQ 93 (529)
Q Consensus 15 g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~ 93 (529)
|+.+++++|++.|.+++.. |..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~---------------------- 59 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR---------------------- 59 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC----------------------
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC----------------------
Confidence 6888999999999998765 89999999999999999999999999999987665544
Q ss_pred CCCCCHHHHHHHcCcHHHHHHHhhcCCC-----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCChH
Q psy2356 94 GDGFTPLAVAMQQGHDKVVAVLLENDTR-----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTK 168 (529)
Q Consensus 94 ~~~~~~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~~~ 168 (529)
|||++|+..|+.+++++|++.+.. +..+.|||++|+..|+.+++++|++.
T Consensus 60 ----t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--------------------- 114 (223)
T 2f8y_A 60 ----TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--------------------- 114 (223)
T ss_dssp ----CHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---------------------
T ss_pred ----CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc---------------------
Confidence 455566788888899988887652 44556666666666666555555542
Q ss_pred HHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCc
Q psy2356 169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLT 248 (529)
Q Consensus 169 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~ 248 (529)
+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus 115 ----------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 160 (223)
T 2f8y_A 115 ----------------------------------HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET 160 (223)
T ss_dssp ----------------------------------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred ----------------------------------CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence 2234455566778888888888888888888888888777777888
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc
Q psy2356 249 PLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305 (529)
Q Consensus 249 ~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~ 305 (529)
||++|+..|+.+++++|+++|++++..+..|.||+++|++.++.+++++|+++|+..
T Consensus 161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 888888888888888888888888777777888888888888888888888877754
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.7e-35 Score=269.84 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=175.7
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCccccccccc
Q psy2356 11 AARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGD 90 (529)
Q Consensus 11 A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ 90 (529)
+++..+.+.+..++..+ +++..|..|+||||+|+..|+.++|++|+++|++++..+
T Consensus 6 ~i~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------------- 61 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE----------------------- 61 (285)
T ss_dssp TGGGCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT-----------------------
T ss_pred HHHhcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-----------------------
Confidence 34566777777777665 788999999999999999999999999999999987653
Q ss_pred cccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHHhhCCC
Q psy2356 91 FKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDD 166 (529)
Q Consensus 91 ~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a~~~~~ 166 (529)
|.||||+|+..|+.+++++|++++++ +..|.|||++|+..|+.+++++|++.++
T Consensus 62 -----g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga----------------- 119 (285)
T 3kea_A 62 -----NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW----------------- 119 (285)
T ss_dssp -----TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCG-----------------
T ss_pred -----CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC-----------------
Confidence 45667777889999999999998766 5667788888888888888777776543
Q ss_pred hHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCcccCCC
Q psy2356 167 TKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSG-FTPLHIASHYGNEGVANILLDKRADVNFSAKS 245 (529)
Q Consensus 167 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 245 (529)
+++..+..| .||||+|+..|+.+++++|+++|++.... ..
T Consensus 120 --------------------------------------~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~ 160 (285)
T 3kea_A 120 --------------------------------------RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AI 160 (285)
T ss_dssp --------------------------------------GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-ST
T ss_pred --------------------------------------CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cC
Confidence 333455556 57777777777777777777777665222 25
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCC
Q psy2356 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP-LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGY 324 (529)
Q Consensus 246 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~ 324 (529)
|.||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..|+.+++++|+++|++++..+. .|+..|+
T Consensus 161 g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~ 233 (285)
T 3kea_A 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDD 233 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTC
T ss_pred CccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCC
Confidence 6777777777777777777777777777777777776 7777777777777777777777776653 3455777
Q ss_pred hhHHHHhhhhc
Q psy2356 325 ISVEESLGAAE 335 (529)
Q Consensus 325 ~~~~~~l~~~~ 335 (529)
.+++++|++..
T Consensus 234 ~~iv~~Ll~~g 244 (285)
T 3kea_A 234 AEIAKMIIEKH 244 (285)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 77777776554
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5e-34 Score=252.97 Aligned_cols=210 Identities=23% Similarity=0.281 Sum_probs=178.2
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCCcHHHH
Q psy2356 212 SGFTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP-----DIPTVRGETPLHL 285 (529)
Q Consensus 212 ~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~-----~~~~~~~~t~l~~ 285 (529)
.|.||||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 468999999999999999999987 9999999999999999999999999999999998876 6667789999999
Q ss_pred HHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL 365 (529)
Q Consensus 286 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 365 (529)
|+..|+.+++++|+++|++++..+.... +
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--~------------------------------------------------- 110 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSV--F------------------------------------------------- 110 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGG--G-------------------------------------------------
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcc--e-------------------------------------------------
Confidence 9999999999999999998876554321 0
Q ss_pred hhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHH
Q psy2356 366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSA 445 (529)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~ 445 (529)
....+..+..|.||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+
T Consensus 111 ---------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------ga~~~~~d~~g~t~L~~A~ 162 (232)
T 2rfa_A 111 ---------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-------------------GADIRAQDSLGNTVLHILI 162 (232)
T ss_dssp ---------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHH
T ss_pred ---------eecccccccCCCCHHHHHHHcCCHHHHHHHHHC-------------------CCCCCCCCCCCCCHHHHHH
Confidence 001234566799999999999999998888876 5567888999999999999
Q ss_pred HcCcHHHH----HHHHhCCCCC------cchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhcc
Q psy2356 446 SEGHADMS----AMLLEHGADV------SHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAK 500 (529)
Q Consensus 446 ~~~~~~~v----~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~ 500 (529)
..|+.+++ ++|+++|+++ +.+|..|.|||++|++.|+.+++++|++++.......
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhh
Confidence 99999988 9999999988 5889999999999999999999999999998776443
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-36 Score=283.26 Aligned_cols=198 Identities=19% Similarity=0.199 Sum_probs=109.6
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---HH
Q psy2356 218 HIASHYGNEGVANILLDKRADVNF-SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ---TD 293 (529)
Q Consensus 218 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~---~~ 293 (529)
|.|+..+..+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+ .+
T Consensus 102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~ 181 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 181 (327)
T ss_dssp --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTT
T ss_pred HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHH
Confidence 334444444444444444444444 44444455555555555555555555454444444444555555554444 34
Q ss_pred HHHHHHHCC-CCcccccccCCcHHHHHHH----cCChhHHHHhhhhc-------------------ccccccCCCCCCcH
Q psy2356 294 IIRILLRNG-AQVDARAREGHTALSIAQK----LGYISVEESLGAAE-------------------RSQLKKRGREGHTA 349 (529)
Q Consensus 294 ~~~~Ll~~g-~~~~~~~~~g~t~l~~a~~----~~~~~~~~~l~~~~-------------------~~~~~~~~~~~~~~ 349 (529)
+++.|++.+ ++++..+..|.||||+|+. .|+.+++++|++.. +.+++..+..|.||
T Consensus 182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~ 261 (327)
T 1sw6_A 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261 (327)
T ss_dssp CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred HHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence 444444433 3444444445555555544 44445555444332 55666777778888
Q ss_pred HHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCC
Q psy2356 350 LSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAK 429 (529)
Q Consensus 350 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~ 429 (529)
||.|+. +++| ...+.+..+..|.||||+|+..|+.+++++|+++ |+|
T Consensus 262 L~~a~~------~~~L--------l~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-------------------Gad 308 (327)
T 1sw6_A 262 ILENLD------LKWI--------IANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-------------------GAD 308 (327)
T ss_dssp HHHHCS------HHHH--------HHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-------------------TCC
T ss_pred hHHHHH------HHHH--------HHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCC
Confidence 887774 4555 3335688889999999999999999999988886 566
Q ss_pred CCCcccCCCCHHHHHHHcC
Q psy2356 430 PNAESVAGFTPLHLSASEG 448 (529)
Q Consensus 430 ~~~~~~~g~t~L~~A~~~~ 448 (529)
++.+|..|+||||+|+++|
T Consensus 309 ~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 309 PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TTCCCTTSCCGGGGTCC--
T ss_pred CcccCCCCCCHHHHHHhcC
Confidence 7889999999999998765
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6.7e-33 Score=245.71 Aligned_cols=213 Identities=22% Similarity=0.266 Sum_probs=165.7
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKN-NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
.|.||||.||..|+.++|++|++. |++++..|..|+||||+|+..|+.+++++|++.|+++.....
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~------------- 68 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM------------- 68 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCC-------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccc-------------
Confidence 489999999999999999999997 999999999999999999999999999999999988632110
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHHH
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIA 161 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~a 161 (529)
...+..|.||||+|+..|+.+++++|++++.+....... +.
T Consensus 69 --------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~---------------------------~~---- 109 (232)
T 2rfa_A 69 --------TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG---------------------------SV---- 109 (232)
T ss_dssp --------CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCS---------------------------GG----
T ss_pred --------cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCC---------------------------cc----
Confidence 112333445555556666666666666665441110000 00
Q ss_pred hhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcc
Q psy2356 162 AKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNF 241 (529)
Q Consensus 162 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~ 241 (529)
.....+..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 110 ----------------------------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 149 (232)
T 2rfa_A 110 ----------------------------------------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA 149 (232)
T ss_dssp ----------------------------------------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred ----------------------------------------eeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 0011234556789999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc
Q psy2356 242 SAKSGLTPLHVASFMGCMNIV----IYLLQNDANP------DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307 (529)
Q Consensus 242 ~~~~~~~~l~~a~~~~~~~~v----~~Ll~~g~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~ 307 (529)
.|..|.||||+|+..++.+++ ++|++.|+++ +..+..|.||||+|++.|+.+++++|+++|.....
T Consensus 150 ~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchh
Confidence 999999999999999999887 8999999887 47888899999999999999999999998766543
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.2e-34 Score=254.76 Aligned_cols=203 Identities=27% Similarity=0.368 Sum_probs=148.2
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356 209 TSKSGFTPLHIASHYGNEGVANILLDKRA----DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLH 284 (529)
Q Consensus 209 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~ 284 (529)
.+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 83 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH 83 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 45567777777777777777777776654 56667777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHH
Q psy2356 285 LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364 (529)
Q Consensus 285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 364 (529)
+|+..|+.+++++|+++|++.+... .+
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~----------------------------~~------------------------- 110 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPHLHS----------------------------IL------------------------- 110 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSSSC----------------------------GG-------------------------
T ss_pred HHHHcCCHHHHHHHHhcccchhHHH----------------------------Hh-------------------------
Confidence 7777777777777777765532100 00
Q ss_pred hhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCccc-CCCCHHHH
Q psy2356 365 LKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV-AGFTPLHL 443 (529)
Q Consensus 365 l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~-~g~t~L~~ 443 (529)
+..+..|.||||+|+..|+.+++++|+++ |++++.++. .|.||||+
T Consensus 111 --------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------g~~~~~~~~~~g~tpL~~ 157 (236)
T 1ikn_D 111 --------------KATNYNGHTCLHLASIHGYLGIVELLVSL-------------------GADVNAQEPCNGRTALHL 157 (236)
T ss_dssp --------------GCCCTTCCCHHHHHHHTTCHHHHHHHHHH-------------------TCCTTCCCTTTCCCHHHH
T ss_pred --------------hccCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCCCCCCCCCCCCCHHHH
Confidence 22345577788888888887777777765 445566665 78888888
Q ss_pred HHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhh
Q psy2356 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497 (529)
Q Consensus 444 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 497 (529)
|+..|+.++|++|+++|++++..|..|.|||++|+..|+.+++++|++++++..
T Consensus 158 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp HHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred HHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 888888888888888888888888888888888888888888888888888766
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.3e-34 Score=255.72 Aligned_cols=215 Identities=26% Similarity=0.256 Sum_probs=173.4
Q ss_pred CCCchhHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHH
Q psy2356 1 SGEGHTSFLRAARAGHLDKIIEHLKNNV----DINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHI 76 (529)
Q Consensus 1 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~----~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~ 76 (529)
+++|.||||.||..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t---- 80 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNT---- 80 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCC----
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC----
Confidence 3689999999999999999999987654 68888999999999999999999999999999998876655444
Q ss_pred HhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcC
Q psy2356 77 ASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLP 156 (529)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 156 (529)
|||+|+..|+.+++++|++.+.....
T Consensus 81 ----------------------~L~~A~~~~~~~~v~~Ll~~~~~~~~-------------------------------- 106 (236)
T 1ikn_D 81 ----------------------PLHLACEQGCLASVGVLTQSCTTPHL-------------------------------- 106 (236)
T ss_dssp ----------------------HHHHHHHHTCHHHHHHHHHSTTTTSS--------------------------------
T ss_pred ----------------------HHHHHHHcCCHHHHHHHHhcccchhH--------------------------------
Confidence 44455666677777777666543110
Q ss_pred HHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Q psy2356 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236 (529)
Q Consensus 157 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 236 (529)
...++..+..|.||||+|+..|+.+++++|+++|
T Consensus 107 ----------------------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 140 (236)
T 1ikn_D 107 ----------------------------------------------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140 (236)
T ss_dssp ----------------------------------------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred ----------------------------------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 0011345567889999999999999999999999
Q ss_pred CCCcccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc--cccccCC
Q psy2356 237 ADVNFSAK-SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD--ARAREGH 313 (529)
Q Consensus 237 ~~~~~~~~-~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~--~~~~~g~ 313 (529)
++++..+. .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++.. ..+..+.
T Consensus 141 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~ 220 (236)
T 1ikn_D 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 220 (236)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchH
Confidence 99999887 89999999999999999999999999999999999999999999999999999999999765 5666677
Q ss_pred cHHHHH
Q psy2356 314 TALSIA 319 (529)
Q Consensus 314 t~l~~a 319 (529)
|+...+
T Consensus 221 ~~~~~~ 226 (236)
T 1ikn_D 221 ESYDTE 226 (236)
T ss_dssp TCCCCC
T ss_pred HHHhhh
Confidence 665433
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.9e-32 Score=236.96 Aligned_cols=192 Identities=22% Similarity=0.304 Sum_probs=132.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcC
Q psy2356 245 SGLTPLHVASFMGCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323 (529)
Q Consensus 245 ~~~~~l~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~ 323 (529)
.+.|||+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+|+|+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 34556666666666666665555543 55555666666666666666666666666666666666666666666666666
Q ss_pred ChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy2356 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL 403 (529)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 403 (529)
+.+++++|++....+++. .+..|.||||+|+..|+.+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~---------------------------------------~~~~g~t~L~~A~~~~~~~~v~~ 124 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNK---------------------------------------HNRYGGNALIPAAEKGHIDNVKL 124 (201)
T ss_dssp CHHHHHHHHHHSCCCTTC---------------------------------------CCTTSCCSHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHhccCccccc---------------------------------------ccCCCCcHHHHHHHcCCHHHHHH
Confidence 666666665433333222 33445666667777777777777
Q ss_pred HHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCc-----HHHHHHHHhCCCCCcchhhcCCCHHHHHH
Q psy2356 404 LLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH-----ADMSAMLLEHGADVSHAAKEGHTALSIAQ 478 (529)
Q Consensus 404 Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 478 (529)
|+++| +++++.++..|.||||+|+..++ .+++++|+++|++++.+|..|.|||++|+
T Consensus 125 Ll~~g------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 186 (201)
T 3hra_A 125 LLEDG------------------REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186 (201)
T ss_dssp HHHHC------------------CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHcC------------------CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Confidence 76653 15667888889999999998887 89999999999999999999999999999
Q ss_pred HhCCchHHHHhhccc
Q psy2356 479 KLGYISVEESLKGVT 493 (529)
Q Consensus 479 ~~~~~~~~~~L~~~~ 493 (529)
+.|+.+++++|++++
T Consensus 187 ~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 187 QKGYTEISKILAQYN 201 (201)
T ss_dssp HHTCHHHHHHHHTCC
T ss_pred HcCCHhHHHHHHhcC
Confidence 999999999998864
No 46
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.6e-32 Score=226.23 Aligned_cols=158 Identities=34% Similarity=0.531 Sum_probs=109.4
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy2356 216 PLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII 295 (529)
Q Consensus 216 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~ 295 (529)
+|+.|++.|+.++|++|++.|++++.++..|.|||++|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v 86 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 86 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence 56777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHh
Q psy2356 296 RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIA 375 (529)
Q Consensus 296 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~ 375 (529)
++|+++|++++.++..|
T Consensus 87 ~~Ll~~gadvn~~d~~G--------------------------------------------------------------- 103 (169)
T 4gpm_A 87 KLLISKGADVNAKDSDG--------------------------------------------------------------- 103 (169)
T ss_dssp HHHHHTTCCTTCCCTTS---------------------------------------------------------------
T ss_pred HHHHHCcCCCCCCCCCC---------------------------------------------------------------
Confidence 77777777766554444
Q ss_pred hcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHH
Q psy2356 376 KGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455 (529)
Q Consensus 376 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 455 (529)
.||||+|+..|+.+++++|+++ |+|++.++..|+|||++|+++|+.+++++
T Consensus 104 ----------~TpLh~A~~~g~~~~v~~Ll~~-------------------gad~~~~d~~G~TpL~~A~~~g~~~iv~~ 154 (169)
T 4gpm_A 104 ----------RTPLHHAAENGHKEVVKLLISK-------------------GADVNTSDSDGRTPLDLAREHGNEEVVKL 154 (169)
T ss_dssp ----------CCHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ----------CCHHHHHHHcCCHHHHHHHHHc-------------------CCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 3445555555555555555554 55667777788888888888888888888
Q ss_pred HHhCCCCCcc
Q psy2356 456 LLEHGADVSH 465 (529)
Q Consensus 456 Ll~~g~~~~~ 465 (529)
|+++|++++.
T Consensus 155 Ll~~GA~ie~ 164 (169)
T 4gpm_A 155 LEKQGGWLEH 164 (169)
T ss_dssp HHTC------
T ss_pred HHHCCCCcCC
Confidence 8888888753
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4e-32 Score=225.10 Aligned_cols=157 Identities=34% Similarity=0.516 Sum_probs=123.6
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHH
Q psy2356 249 PLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328 (529)
Q Consensus 249 ~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~ 328 (529)
+|+.|+..|+.++|++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~----------------- 69 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD----------------- 69 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccC-----------------
Confidence 566777777777777777777777777777777777777777777777777777766554444
Q ss_pred HHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q psy2356 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNN 408 (529)
Q Consensus 329 ~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 408 (529)
|.||||+|+..|+.+++++|+++
T Consensus 70 --------------------------------------------------------g~TpLh~A~~~g~~~~v~~Ll~~- 92 (169)
T 4gpm_A 70 --------------------------------------------------------GRTPLHHAAENGHKEVVKLLISK- 92 (169)
T ss_dssp --------------------------------------------------------SCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred --------------------------------------------------------CCCHHHHHHHcCCHHHHHHHHHC-
Confidence 45666666666777666666665
Q ss_pred CCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHH
Q psy2356 409 AQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEES 488 (529)
Q Consensus 409 ~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 488 (529)
|+|+|.++..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|++.|+.+++++
T Consensus 93 ------------------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~ 154 (169)
T 4gpm_A 93 ------------------GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL 154 (169)
T ss_dssp ------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ------------------cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhh
Q psy2356 489 LKGVTETLI 497 (529)
Q Consensus 489 L~~~~~~~~ 497 (529)
|++.++++.
T Consensus 155 Ll~~GA~ie 163 (169)
T 4gpm_A 155 LEKQGGWLE 163 (169)
T ss_dssp HHTC-----
T ss_pred HHHCCCCcC
Confidence 999999876
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.7e-31 Score=231.00 Aligned_cols=192 Identities=20% Similarity=0.262 Sum_probs=168.5
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCC-CCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q psy2356 211 KSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA 289 (529)
Q Consensus 211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~ 289 (529)
..+.|||+.|+..|+.+.++.|+..+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 356899999999999999999999877 8999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhh
Q psy2356 290 NQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGV 368 (529)
Q Consensus 290 ~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~ 368 (529)
|+.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|++....+++..+..
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~----------------------- 139 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF----------------------- 139 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT-----------------------
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC-----------------------
Confidence 9999999999 5678999999999999999999999999999987765655555544
Q ss_pred hhHHHHhhcCCCCCCCCchHHHHHHHcCC-----HHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHH
Q psy2356 369 TETLIIAKGDGEKHKNGLTPLHLCAQEDR-----VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443 (529)
Q Consensus 369 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~ 443 (529)
|.||||+|+..++ .+++++|++ +|++++.++..|+|||++
T Consensus 140 ----------------g~t~L~~A~~~~~~~~~~~~~v~~Ll~-------------------~ga~~~~~~~~g~t~l~~ 184 (201)
T 3hra_A 140 ----------------GYTALIEAVGLREGNQLYQDIVKLLME-------------------NGADQSIKDNSGRTAMDY 184 (201)
T ss_dssp ----------------SCCHHHHHHHSSCCSHHHHHHHHHHHH-------------------TTCCTTCCCTTSCCHHHH
T ss_pred ----------------CCCHHHHHHHhccchhhHHHHHHHHHH-------------------CCCCCCccCCCCCCHHHH
Confidence 5555555555554 555555555 567778899999999999
Q ss_pred HHHcCcHHHHHHHHhCC
Q psy2356 444 SASEGHADMSAMLLEHG 460 (529)
Q Consensus 444 A~~~~~~~~v~~Ll~~g 460 (529)
|+..|+.+++++|+++|
T Consensus 185 A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 185 ANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTCHHHHHHHHTCC
T ss_pred HHHcCCHhHHHHHHhcC
Confidence 99999999999999987
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.4e-33 Score=251.42 Aligned_cols=213 Identities=25% Similarity=0.252 Sum_probs=178.6
Q ss_pred CCCHHHHHHHcCCHH----HHHHHHhCCCCCcc----cCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCC------
Q psy2356 213 GFTPLHIASHYGNEG----VANILLDKRADVNF----SAKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIP------ 275 (529)
Q Consensus 213 ~~t~l~~A~~~~~~~----~v~~Ll~~g~~~~~----~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~------ 275 (529)
|.||||.|+..|+.+ ++++|++.|++++. .+..|.||||+|+.. |+.+++++|++.|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 678999999999987 66777788999988 788999999999999 9999999999988776633
Q ss_pred -----CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHH
Q psy2356 276 -----TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTAL 350 (529)
Q Consensus 276 -----~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 350 (529)
+..|.||||+|+..|+.+++++|+++|++++..+..+..+
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~----------------------------------- 126 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ----------------------------------- 126 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS-----------------------------------
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc-----------------------------------
Confidence 3678999999999999999999999999988877654310
Q ss_pred HHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCC
Q psy2356 351 SIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKP 430 (529)
Q Consensus 351 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~ 430 (529)
......+..|.||||+|+..|+.+++++|++++ ..|+++
T Consensus 127 -------------------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~----------------~~ga~~ 165 (256)
T 2etb_A 127 -------------------------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENP----------------HQPASL 165 (256)
T ss_dssp -------------------------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS----------------SCCCCT
T ss_pred -------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhcc----------------ccCCCc
Confidence 011233456889999999999999988888821 025677
Q ss_pred CCcccCCCCHHHHHHH--cCcHH-------HHHHHHhCCCCC-------cchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356 431 NAESVAGFTPLHLSAS--EGHAD-------MSAMLLEHGADV-------SHAAKEGHTALSIAQKLGYISVEESLKGVTE 494 (529)
Q Consensus 431 ~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 494 (529)
+.++..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|.||||+|++.|+.+++++|++++.
T Consensus 166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 8889999999999999 78888 999999999999 8999999999999999999999999999998
Q ss_pred hhhhccC
Q psy2356 495 TLIIAKG 501 (529)
Q Consensus 495 ~~~~~~~ 501 (529)
.......
T Consensus 246 ~~~~~~~ 252 (256)
T 2etb_A 246 SGAAAHH 252 (256)
T ss_dssp HHHHHHC
T ss_pred CCCCccc
Confidence 8775443
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2e-32 Score=248.83 Aligned_cols=227 Identities=19% Similarity=0.224 Sum_probs=161.4
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHH----cCCCCC----CCCCCCChHHHHHHHc---CChhHHHHHHHCCCCCCCCCCCC
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLK----NNVDIN----TANANGLNALHLASKD---GHLHVVTELLSRGANVDSATKKG 70 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~----~~~~~~----~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~~~~~~ 70 (529)
.+|.|+||.||+.|++++|+.|++ .+.+++ ..+..|+||||+|+.. |+.++|++|++.|++...
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~----- 85 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS----- 85 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC-----
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc-----
Confidence 578999999999999998888886 455555 3578899999999986 999999999998876542
Q ss_pred CchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCC--CCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356 71 NTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDT--RGKDGFTPLAVAMQQGHDKVVAVLLEND 148 (529)
Q Consensus 71 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~l~~A~~~~~~~~v~~Ll~~~ 148 (529)
++.+++... .+..|.|||++|+..|+.+++++|++.+
T Consensus 86 -----------------------------------------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 86 -----------------------------------------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp -----------------------------------------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred -----------------------------------------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 112222221 1334555666666555555555555544
Q ss_pred CCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHH
Q psy2356 149 TRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV 228 (529)
Q Consensus 149 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 228 (529)
.+.......- . .........+..|.||||+|+..|+.++
T Consensus 125 a~~~~~~~~~--------------~---------------------------~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 125 ADVQAAANGD--------------F---------------------------FKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp CCTTCCBCSG--------------G---------------------------GSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred CCcCcccccc--------------c---------------------------cccccccccccCCCCHHHHHHHcCCHHH
Confidence 3322111000 0 0001123345578999999999999999
Q ss_pred HHHHHh---CCCCCcccCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCCC-------CCCCCCCcHHHHHHHc
Q psy2356 229 ANILLD---KRADVNFSAKSGLTPLHVASFMGC---------MNIVIYLLQNDANPD-------IPTVRGETPLHLAARA 289 (529)
Q Consensus 229 v~~Ll~---~g~~~~~~~~~~~~~l~~a~~~~~---------~~~v~~Ll~~g~~~~-------~~~~~~~t~l~~a~~~ 289 (529)
+++|++ .|++++..+..|.||||+|+..++ .+++++|++.|++++ ..+..|.||||+|++.
T Consensus 164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence 999999 899999999999999999999888 789999999998886 4888999999999999
Q ss_pred CCHHHHHHHHHCCC-CcccccccCCcH
Q psy2356 290 NQTDIIRILLRNGA-QVDARAREGHTA 315 (529)
Q Consensus 290 ~~~~~~~~Ll~~g~-~~~~~~~~g~t~ 315 (529)
|+.+++++|+++|+ ++......+.+|
T Consensus 244 g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 244 GKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp TCHHHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 99999999999998 666655555544
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=5.8e-32 Score=243.38 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=54.9
Q ss_pred chhHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCChHHHHHHHc---CChhHHHHHHHCCCCCCC
Q psy2356 4 GHTSFLRAARAGHLD----KIIEHLKNNVDINT----ANANGLNALHLASKD---GHLHVVTELLSRGANVDS 65 (529)
Q Consensus 4 g~t~L~~A~~~g~~~----~v~~ll~~~~~~~~----~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~ 65 (529)
|.||||.||..|+.+ ++++|++.|++++. .|..|+||||+|+.. |+.+++++|++.|++++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~ 74 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN 74 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccc
Confidence 889999999999997 66777778999998 899999999999999 999999999998887764
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=2.3e-32 Score=248.38 Aligned_cols=219 Identities=21% Similarity=0.252 Sum_probs=152.8
Q ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCc----ccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCC
Q psy2356 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLD----KRADVN----FSAKSGLTPLHVASFM---GCMNIVIYLLQNDANP 272 (529)
Q Consensus 204 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~----~g~~~~----~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~ 272 (529)
...+..+..|.|+||.|+..|+.++++.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|++.|+++
T Consensus 4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 3445677789999999999999998888876 566665 3578899999999987 9999999999987642
Q ss_pred -------C----CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccc--------------cCCcHHHHHHHcCChhH
Q psy2356 273 -------D----IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAR--------------EGHTALSIAQKLGYISV 327 (529)
Q Consensus 273 -------~----~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------~g~t~l~~a~~~~~~~~ 327 (529)
+ ..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.++
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 2 2566899999999999999999999999999999887 57777777777777777
Q ss_pred HHHhhhh--cccccccCCCCCCcHHHHHHHhCchh--HHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy2356 328 EESLGAA--ERSQLKKRGREGHTALSIAQKLGYIS--VEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL 403 (529)
Q Consensus 328 ~~~l~~~--~~~~~~~~~~~~~~~l~~a~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 403 (529)
+++|++. .+.+++..+..|.||||+|+..++.. ..+++ .+++++
T Consensus 164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~--------------------------------~~~v~~ 211 (273)
T 2pnn_A 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV--------------------------------TSMYNE 211 (273)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH--------------------------------HHHHHH
T ss_pred HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH--------------------------------HHHHHH
Confidence 7777654 44555555555444444444433311 00000 344555
Q ss_pred HHhcCCCCCCCchhHHHHHHHHcCCCCC-------CcccCCCCHHHHHHHcCcHHHHHHHHhCCC-CCcchhhcCCCH
Q psy2356 404 LLKNNAQVDTPTKMDIATTLLEYGAKPN-------AESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTA 473 (529)
Q Consensus 404 Ll~~~~~~~~~~~~~~~~~L~~~g~~~~-------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~ 473 (529)
|++ +|++++ .++..|+||||+|+..|+.++|++|+++|+ |+......+.+|
T Consensus 212 Ll~-------------------~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 212 ILI-------------------LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp HHH-------------------HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred HHH-------------------hhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 554 455555 488899999999999999999999999999 787776666554
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2.9e-31 Score=239.43 Aligned_cols=214 Identities=23% Similarity=0.214 Sum_probs=171.4
Q ss_pred CCCCCHHHHHHHcCCHHH----HHHHHhCCCCCcccC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCC--------
Q psy2356 211 KSGFTPLHIASHYGNEGV----ANILLDKRADVNFSA----KSGLTPLHVAS---FMGCMNIVIYLLQNDAN-------- 271 (529)
Q Consensus 211 ~~~~t~l~~A~~~~~~~~----v~~Ll~~g~~~~~~~----~~~~~~l~~a~---~~~~~~~v~~Ll~~g~~-------- 271 (529)
..+.++||.|+..|+.+. +++|++.|++++..+ ..|.||||+|+ ..|+.+++++|++.|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 356789999999999885 455555888888665 66999999998 67999999999987643
Q ss_pred ---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCc
Q psy2356 272 ---PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHT 348 (529)
Q Consensus 272 ---~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 348 (529)
.+..+..|.||||+|+..|+.+++++|+++|++++..+..+..
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~---------------------------------- 128 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF---------------------------------- 128 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC----------------------------------
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc----------------------------------
Confidence 3444457889999999999999999999999888876653100
Q ss_pred HHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCC
Q psy2356 349 ALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGA 428 (529)
Q Consensus 349 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~ 428 (529)
...+....+..|.||||+|+..|+.+++++|++.|. .|+
T Consensus 129 -------------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----------------~ga 167 (260)
T 3jxi_A 129 -------------------------QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH----------------KQA 167 (260)
T ss_dssp -------------------------SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS----------------CCC
T ss_pred -------------------------CcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc----------------cCC
Confidence 001113344678899999999999999888888210 256
Q ss_pred CCCCcccCCCCHHHHHHHcCc---------HHHHHHHHhCCCCC-------cchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356 429 KPNAESVAGFTPLHLSASEGH---------ADMSAMLLEHGADV-------SHAAKEGHTALSIAQKLGYISVEESLKGV 492 (529)
Q Consensus 429 ~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 492 (529)
+++.++..|+||||+|+..++ .+++++|+++|+++ +..|..|.||||+|++.|+.+++++|+++
T Consensus 168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 778899999999999998887 79999999999998 67999999999999999999999999999
Q ss_pred cchhhhc
Q psy2356 493 TETLIIA 499 (529)
Q Consensus 493 ~~~~~~~ 499 (529)
+......
T Consensus 248 g~~~~~~ 254 (260)
T 3jxi_A 248 EIADAAA 254 (260)
T ss_dssp HHHHHC-
T ss_pred CCCcccc
Confidence 9988744
No 54
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=1.8e-32 Score=256.51 Aligned_cols=249 Identities=15% Similarity=0.065 Sum_probs=160.0
Q ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCC---cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHH
Q psy2356 214 FTPLHIASHYGNEGVANILLDKRADV---NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP---DIPTVRGETPLHLAA 287 (529)
Q Consensus 214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~---~~~~~~~~t~l~~a~ 287 (529)
.||||+|+..|+.+++++|++.|+.. +..+..+.||||+|+..|+.+++++|+++|+++ +..+.. .||||+|+
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa 171 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA 171 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence 48888888888888888888887622 123345667888888888888888888888642 222222 78888888
Q ss_pred HcCCHHHHHHHHHCCCCccc--ccccCCcHHHHHH-HcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHH
Q psy2356 288 RANQTDIIRILLRNGAQVDA--RAREGHTALSIAQ-KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364 (529)
Q Consensus 288 ~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 364 (529)
..|+.+++++|+++|++++. .+..|.||||+|+ ..|+.+++++|++... .|.||++.|+..|+.+++++
T Consensus 172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~l 243 (376)
T 2aja_A 172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPF 243 (376)
T ss_dssp HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHH
T ss_pred HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHH
Confidence 88888888888888888776 7777888888888 8888888888876331 26788888888888888888
Q ss_pred hhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHH------------HHHHHHhcCCCCCCCchhHHHHHHHHc------
Q psy2356 365 LKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG------------VAELLLKNNAQVDTPTKMDIATTLLEY------ 426 (529)
Q Consensus 365 l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~------------~~~~Ll~~~~~~~~~~~~~~~~~L~~~------ 426 (529)
|.+......... ++++.|+..|+.+ +++.|+..+. ....+.+++|++.
T Consensus 244 L~~~ga~~~~~~----------~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~----~~~~~~~~~Ll~~~~vk~l 309 (376)
T 2aja_A 244 IARHVNRLKEMH----------DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND----EVLLDDIRFLLSIPGIKAL 309 (376)
T ss_dssp HHHHHHHHHHHH----------TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC----GGGHHHHHHHHTSTTTGGG
T ss_pred HHhcCccccccc----------HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch----hhHHHHHHHHHhChhhhhh
Confidence 866544432221 2455555555554 3455666542 2345666666653
Q ss_pred ---CCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcc
Q psy2356 427 ---GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGV 492 (529)
Q Consensus 427 ---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 492 (529)
|++++ .+.|||++|+..|+.++|++|++.| ..++..++|++.+|...|+.++++.-+.+
T Consensus 310 ~~~g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 310 APTATIPG----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp SSCCSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC----------------------
T ss_pred hccCCCCC----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHHH
Confidence 44443 4568999999999999999999875 66788899999999999999988765543
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3.6e-30 Score=232.30 Aligned_cols=218 Identities=17% Similarity=0.186 Sum_probs=153.5
Q ss_pred CCchhHHHHHHHcCCHHHHHHHH----HcCCCCCCCC----CCCChHHHHHH---HcCChhHHHHHHHCCCCCCCCCCCC
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHL----KNNVDINTAN----ANGLNALHLAS---KDGHLHVVTELLSRGANVDSATKKG 70 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll----~~~~~~~~~~----~~g~t~L~~A~---~~g~~~iv~~Ll~~ga~~~~~~~~~ 70 (529)
.-|.|+||.||+.|+.+.|+.|+ +.|.+++..+ ..|+||||+|+ ..|+.+++++|++.|++.....
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~--- 79 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR--- 79 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence 45789999999999999544444 4888888665 66999999998 6799999999999877654211
Q ss_pred CchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcC--CCCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356 71 NTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEND--TRGKDGFTPLAVAMQQGHDKVVAVLLEND 148 (529)
Q Consensus 71 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~ 148 (529)
.+++.. ..+..|.||||+|+..|+.+++++|++.+
T Consensus 80 -------------------------------------------~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 80 -------------------------------------------EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp -------------------------------------------HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred -------------------------------------------hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 011111 11224455555555555555555555443
Q ss_pred CCCCCCcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHH
Q psy2356 149 TRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV 228 (529)
Q Consensus 149 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 228 (529)
++...... +.. ....+....+..|.||||+|+..|+.++
T Consensus 117 a~~~~~~~--------------------~~~---------------------~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 155 (260)
T 3jxi_A 117 ADVHAQAR--------------------GRF---------------------FQPKDEGGYFYFGELPLSLAACTNQPHI 155 (260)
T ss_dssp CCTTCCCE--------------------ECC---------------------CSSSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred CCcCcccc--------------------ccc---------------------cCcccccccccCCCCHHHHHHHcCCHHH
Confidence 32221100 000 0011222334578899999999999999
Q ss_pred HHHHHh---CCCCCcccCCCCCcHHHHHHHcCC---------HHHHHHHHHCCCCC-------CCCCCCCCcHHHHHHHc
Q psy2356 229 ANILLD---KRADVNFSAKSGLTPLHVASFMGC---------MNIVIYLLQNDANP-------DIPTVRGETPLHLAARA 289 (529)
Q Consensus 229 v~~Ll~---~g~~~~~~~~~~~~~l~~a~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~~~t~l~~a~~~ 289 (529)
+++|++ .|++++..+..|+||||+|+..++ .+++++|++.|+++ +..+..|.||||+|++.
T Consensus 156 v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence 999999 899999999999999999998777 68899999988887 56888899999999999
Q ss_pred CCHHHHHHHHHCCCCcc
Q psy2356 290 NQTDIIRILLRNGAQVD 306 (529)
Q Consensus 290 ~~~~~~~~Ll~~g~~~~ 306 (529)
|+.+++++|+++|.+..
T Consensus 236 g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 236 GKIGIFQHIIRREIADA 252 (260)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCcc
Confidence 99999999998876543
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=5.4e-30 Score=232.14 Aligned_cols=186 Identities=23% Similarity=0.293 Sum_probs=133.3
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CcccccccCCcHHHHHH-----
Q psy2356 249 PLHVASFMGCMNIVIYLLQNDAN--PDIPTVRGETPLHLAARANQTDIIRILLRNGA-QVDARAREGHTALSIAQ----- 320 (529)
Q Consensus 249 ~l~~a~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~~a~----- 320 (529)
+++.|+..++.+.++.+++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+ +++..+..|.||+++|+
T Consensus 79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~ 158 (276)
T 4hbd_A 79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLK 158 (276)
T ss_dssp TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhh
Confidence 44555555555555555544333 45556666666666666666666666666665 66666666666666666
Q ss_pred HcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHH
Q psy2356 321 KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGV 400 (529)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 400 (529)
..++.+++++|++... .....+..|.||||+|+..|+.++
T Consensus 159 ~~~~~~~v~~Ll~~g~----------------------------------------~~~~~~~~g~tpLh~A~~~g~~~~ 198 (276)
T 4hbd_A 159 TQDDIETVLQLFRLGN----------------------------------------INAKASQAGQTALMLAVSHGRVDV 198 (276)
T ss_dssp SHHHHHHHHHHHHHSC----------------------------------------TTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHcCC----------------------------------------CccccCCCCCCHHHHHHHcCCHHH
Confidence 4455566666643221 112234457788888888888888
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHh-CCCCCcchhhcCCCHHHHHHH
Q psy2356 401 AELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE-HGADVSHAAKEGHTALSIAQK 479 (529)
Q Consensus 401 ~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~ 479 (529)
+++|+++ |+|+|.+|..|+||||+|+..|+.++|++|++ +|++++.+|..|.|||++|+.
T Consensus 199 v~~Ll~~-------------------gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~ 259 (276)
T 4hbd_A 199 VKALLAC-------------------EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD 259 (276)
T ss_dssp HHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHhC-------------------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH
Confidence 8877775 55678888899999999999999999999999 899999999999999999999
Q ss_pred hCCchHHHHhhccc
Q psy2356 480 LGYISVEESLKGVT 493 (529)
Q Consensus 480 ~~~~~~~~~L~~~~ 493 (529)
.|+.+++++|++..
T Consensus 260 ~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 260 AGQSEIASMLYSRM 273 (276)
T ss_dssp HTCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHhcc
Confidence 99999999999875
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=3.5e-29 Score=214.48 Aligned_cols=162 Identities=30% Similarity=0.384 Sum_probs=110.1
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHH
Q psy2356 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319 (529)
Q Consensus 240 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a 319 (529)
+..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------- 99 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF--------- 99 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT---------
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------
Confidence 34455566666666666666666666666666666666666666666666666666666666555544333
Q ss_pred HHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHH
Q psy2356 320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG 399 (529)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 399 (529)
.|.||||+|+..|+.+
T Consensus 100 ----------------------------------------------------------------~g~t~L~~A~~~~~~~ 115 (192)
T 2rfm_A 100 ----------------------------------------------------------------SGKTPLMWSIIFGYSE 115 (192)
T ss_dssp ----------------------------------------------------------------TSCCHHHHHHHHTCHH
T ss_pred ----------------------------------------------------------------CCCcHHHHHHHcCCHH
Confidence 3445555555556665
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHH
Q psy2356 400 VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479 (529)
Q Consensus 400 ~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 479 (529)
++++|+++ |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+.
T Consensus 116 ~v~~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 176 (192)
T 2rfm_A 116 MSYFLLEH-------------------GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI 176 (192)
T ss_dssp HHHHHHHT-------------------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred HHHHHHHC-------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 55555554 45567777778888888888888888888888888888888888888888888
Q ss_pred hCCchHHHHhhccc
Q psy2356 480 LGYISVEESLKGVT 493 (529)
Q Consensus 480 ~~~~~~~~~L~~~~ 493 (529)
.|+.+++++|++++
T Consensus 177 ~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 177 FGRQEVIKIFTEVR 190 (192)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hCcHHHHHHHHhcc
Confidence 88888888887764
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=9.2e-29 Score=207.82 Aligned_cols=168 Identities=27% Similarity=0.365 Sum_probs=109.2
Q ss_pred CCHHHHHHHcCCHHHHHHHHhCCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356 214 FTPLHIASHYGNEGVANILLDKRAD-VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT 292 (529)
Q Consensus 214 ~t~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~ 292 (529)
.+|||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 4677777777777777777777665 566666677777777777777777777777777777776777777777777777
Q ss_pred HHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHH
Q psy2356 293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372 (529)
Q Consensus 293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~ 372 (529)
+++++|+++|++++..+..
T Consensus 83 ~~v~~Ll~~g~~~~~~~~~------------------------------------------------------------- 101 (172)
T 3v30_A 83 DIVGLLLERDVDINIYDWN------------------------------------------------------------- 101 (172)
T ss_dssp HHHHHHHTTTCCTTCCCTT-------------------------------------------------------------
T ss_pred HHHHHHHHcCCCCCCCCCC-------------------------------------------------------------
Confidence 7777777666665544433
Q ss_pred HHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHH
Q psy2356 373 IIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM 452 (529)
Q Consensus 373 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 452 (529)
|.||||+|+..|+.+++++|+++ |++++.++..|.|||++|+..|+.++
T Consensus 102 ------------g~t~L~~A~~~~~~~~v~~Ll~~-------------------ga~~~~~~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 102 ------------GGTPLLYAVRGNHVKCVEALLAR-------------------GADLTTEADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp ------------SCCHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred ------------CCCHHHHHHHcCCHHHHHHHHHc-------------------CCCccccCCCCCCHHHHHHHhCcHHH
Confidence 34445555555555555555554 44556677778888888888888888
Q ss_pred HHHHHhCCCCCcchhhcCCCH
Q psy2356 453 SAMLLEHGADVSHAAKEGHTA 473 (529)
Q Consensus 453 v~~Ll~~g~~~~~~~~~g~t~ 473 (529)
+++|+++|+++...+..|.||
T Consensus 151 ~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 151 QQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHhcccCCCCCC
Confidence 888888877777766666665
No 59
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.8e-28 Score=204.94 Aligned_cols=160 Identities=26% Similarity=0.348 Sum_probs=110.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCCh
Q psy2356 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325 (529)
Q Consensus 246 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 325 (529)
|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------- 67 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK--------------- 67 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC---------------
Confidence 44555555555555555555555555555555555555555555555555555555555443333
Q ss_pred hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2356 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405 (529)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 405 (529)
.|.||||+|+..|+.+++++|+
T Consensus 68 ----------------------------------------------------------~g~t~L~~A~~~~~~~~v~~Ll 89 (167)
T 3v31_A 68 ----------------------------------------------------------GRESALSLACSKGYTDIVKMLL 89 (167)
T ss_dssp ----------------------------------------------------------TCCCHHHHHHHHTCHHHHHHHH
T ss_pred ----------------------------------------------------------CCCcHHHHHHHcCCHHHHHHHH
Confidence 3445555566666666666555
Q ss_pred hcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchH
Q psy2356 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485 (529)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 485 (529)
++ |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.++
T Consensus 90 ~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 150 (167)
T 3v31_A 90 DC-------------------GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSV 150 (167)
T ss_dssp HH-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HC-------------------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 54 45567777788899999998888999999999999888888889999999999999999
Q ss_pred HHHhhcccchhh
Q psy2356 486 EESLKGVTETLI 497 (529)
Q Consensus 486 ~~~L~~~~~~~~ 497 (529)
+++|+++...+.
T Consensus 151 ~~~L~~~~~~~~ 162 (167)
T 3v31_A 151 QQVIESHLLKLL 162 (167)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999888877665
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=3.5e-28 Score=203.39 Aligned_cols=67 Identities=40% Similarity=0.587 Sum_probs=46.5
Q ss_pred CCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhccc
Q psy2356 427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVT 493 (529)
Q Consensus 427 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 493 (529)
|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|++.|+.+++++|++++
T Consensus 103 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 3444555666777777777777777777777777777777777777777777777777777776653
No 61
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=4.9e-29 Score=225.88 Aligned_cols=194 Identities=26% Similarity=0.315 Sum_probs=148.8
Q ss_pred chhHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHHcCChhHHHHHHHCCC-CCCCCCCCCCchHHHHhhc
Q psy2356 4 GHTSFLRAARAGHLDKIIEHLKNNVD--INTANANGLNALHLASKDGHLHVVTELLSRGA-NVDSATKKGNTALHIASLG 80 (529)
Q Consensus 4 g~t~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~~~~~l~~a~~~ 80 (529)
+.+++|.|+..|+++.++.+++.+.+ +|..|..|+||||+|+..|+.++|++|++.|+ +++..+..|.||+|+|+..
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 35677888899999999998887655 78888999999999999999999999999988 8887777766666655311
Q ss_pred CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCHHHH
Q psy2356 81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHI 160 (529)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~ 160 (529)
.. ...++.+++++|++.+
T Consensus 156 ~~---------------------~~~~~~~~v~~Ll~~g----------------------------------------- 173 (276)
T 4hbd_A 156 TL---------------------KTQDDIETVLQLFRLG----------------------------------------- 173 (276)
T ss_dssp CC---------------------CSHHHHHHHHHHHHHS-----------------------------------------
T ss_pred Hh---------------------hhhhhHHHHHHHHHcC-----------------------------------------
Confidence 00 0122233333333222
Q ss_pred HhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Q psy2356 161 AAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN 240 (529)
Q Consensus 161 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~ 240 (529)
...+..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 174 -------------------------------------------~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n 210 (276)
T 4hbd_A 174 -------------------------------------------NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN 210 (276)
T ss_dssp -------------------------------------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred -------------------------------------------CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 2223445567888888888888888888888888888
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy2356 241 FSAKSGLTPLHVASFMGCMNIVIYLLQ-NDANPDIPTVRGETPLHLAARANQTDIIRILLRNG 302 (529)
Q Consensus 241 ~~~~~~~~~l~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 302 (529)
..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++++
T Consensus 211 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 211 VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 888888888888888888888888888 78888888888888888888888888888888763
No 62
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=2.9e-32 Score=255.07 Aligned_cols=202 Identities=13% Similarity=0.096 Sum_probs=129.4
Q ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCcc--cCCCCCcHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356 214 FTPLHIASHYGNEGVANILLDKRADVNF--SAKSGLTPLHVAS-FMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290 (529)
Q Consensus 214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~~~~l~~a~-~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 290 (529)
.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+ ..|+.+++++|++.|. .|.|||+.|+..|
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g 236 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYG 236 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCC
Confidence 6899999999999999999999999877 7888999999999 9999999999999774 2789999999999
Q ss_pred CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHH---HhCchhHHHHhhh
Q psy2356 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ---KLGYISVEESLKG 367 (529)
Q Consensus 291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~---~~~~~~~~~~l~~ 367 (529)
+.+++++|+++|++++..+ ++++.|+..|+.+++........ ...+.... ..+..+.++++..
T Consensus 237 ~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~----------~~~~~~li~~~~~~~~~~~~~Ll~ 302 (376)
T 2aja_A 237 EKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQG----------FYMLRNLIRRNDEVLLDDIRFLLS 302 (376)
T ss_dssp TTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHH----------HHHHHHHHHHCCGGGHHHHHHHHT
T ss_pred CHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhh----------HHHHHHHHHcchhhHHHHHHHHHh
Confidence 9999999999998876554 36778888888875532100000 00001111 1123445555533
Q ss_pred hhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHc
Q psy2356 368 VTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE 447 (529)
Q Consensus 368 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~ 447 (529)
..... ...........+.|||++|+..|+.+++++|+++| ..++..++|++.+|-++
T Consensus 303 ~~~vk-~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----------------------~v~~~~~~~~~~~~~~~ 359 (376)
T 2aja_A 303 IPGIK-ALAPTATIPGDANELLRLALRLGNQGACALLLSIP----------------------SVLALTKANNYYINETG 359 (376)
T ss_dssp STTTG-GGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----------------------HHHHSCC----------
T ss_pred Chhhh-hhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----------------------HHHHHHHHhcccccccc
Confidence 22110 01111334456779999999999999999999863 34556699999999999
Q ss_pred CcHHHHHHHHhC
Q psy2356 448 GHADMSAMLLEH 459 (529)
Q Consensus 448 ~~~~~v~~Ll~~ 459 (529)
|..++++.-+++
T Consensus 360 ~~~~~~~~~~~~ 371 (376)
T 2aja_A 360 GRLDLRAVALEH 371 (376)
T ss_dssp ------------
T ss_pred ccccHHHHHHHH
Confidence 999999887654
No 63
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=2.8e-28 Score=202.74 Aligned_cols=112 Identities=32% Similarity=0.345 Sum_probs=78.2
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT 292 (529)
Q Consensus 213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~ 292 (529)
..|+|+.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3567777777777777777777777777777777777777777 777777777777777777777777777777777777
Q ss_pred HHHHHHHHCCCCcccccccCCcHHHHHHHcCCh
Q psy2356 293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325 (529)
Q Consensus 293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 325 (529)
+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 116 (162)
T 1ihb_A 84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116 (162)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 777777777777665555444444444333333
No 64
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=3.1e-28 Score=204.59 Aligned_cols=165 Identities=26% Similarity=0.323 Sum_probs=120.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCCh
Q psy2356 247 LTPLHVASFMGCMNIVIYLLQNDAN-PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325 (529)
Q Consensus 247 ~~~l~~a~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 325 (529)
.+||+.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------------- 66 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA---------------- 66 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC----------------
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhc----------------
Confidence 3455666666666666666555544 45555555566666665555556655555555544333
Q ss_pred hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2356 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405 (529)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 405 (529)
..|.||||+|+..|+.+++++|+
T Consensus 67 ---------------------------------------------------------~~g~t~L~~A~~~~~~~~v~~Ll 89 (172)
T 3v30_A 67 ---------------------------------------------------------KERESALSLASTGGYTDIVGLLL 89 (172)
T ss_dssp ---------------------------------------------------------TTCCCHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------------------------------------------ccCCCHHHHHHHCCCHHHHHHHH
Confidence 34556666777777777777776
Q ss_pred hcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchH
Q psy2356 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485 (529)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 485 (529)
++ |++++.++..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.++
T Consensus 90 ~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 90 ER-------------------DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp TT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred Hc-------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHH
Confidence 65 55678888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhhhccCCC
Q psy2356 486 EESLKGVTETLIIAKGDG 503 (529)
Q Consensus 486 ~~~L~~~~~~~~~~~~~~ 503 (529)
+++|++++.++...+..+
T Consensus 151 ~~~L~~~~~~~~~~~~~~ 168 (172)
T 3v30_A 151 QQVIENHILKLFQSNLVP 168 (172)
T ss_dssp HHHHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHhcccCCC
Confidence 999999999887555443
No 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.7e-28 Score=202.07 Aligned_cols=156 Identities=30% Similarity=0.363 Sum_probs=102.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCCh
Q psy2356 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325 (529)
Q Consensus 246 ~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 325 (529)
..+||+.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A------ 77 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDA------ 77 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHH------
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH------
Confidence 4567777777777777777777777777777777777777777 777777777777777766555555444444
Q ss_pred hHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2356 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405 (529)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 405 (529)
+..|+.+++++|+
T Consensus 78 -------------------------------------------------------------------~~~~~~~~v~~Ll 90 (162)
T 1ihb_A 78 -------------------------------------------------------------------ARAGFLDTLQTLL 90 (162)
T ss_dssp -------------------------------------------------------------------HHHTCHHHHHHHH
T ss_pred -------------------------------------------------------------------HHcCCHHHHHHHH
Confidence 4444444444444
Q ss_pred hcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCC-CcchhhcCCCHHHHHHHhCCch
Q psy2356 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGAD-VSHAAKEGHTALSIAQKLGYIS 484 (529)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~ 484 (529)
++ |++++.++..|+||||+|+..|+.+++++|+++|++ ++..|..|.|||++|+..|+.+
T Consensus 91 ~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~ 151 (162)
T 1ihb_A 91 EF-------------------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151 (162)
T ss_dssp HT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred Hc-------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 43 334455555666666666666666666666666665 4666666666666666666666
Q ss_pred HHHHhhcccc
Q psy2356 485 VEESLKGVTE 494 (529)
Q Consensus 485 ~~~~L~~~~~ 494 (529)
++++|+++++
T Consensus 152 ~~~~Ll~~GA 161 (162)
T 1ihb_A 152 VVSLMQANGA 161 (162)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHhCC
Confidence 6666666654
No 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=2.3e-27 Score=194.95 Aligned_cols=88 Identities=34% Similarity=0.501 Sum_probs=71.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCC
Q psy2356 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV 463 (529)
Q Consensus 384 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 463 (529)
.|.||||+|+..|+.+++++|+++ |++++.++..|+||||+|+..|+.+++++|+++|+++
T Consensus 66 ~g~t~L~~A~~~~~~~~v~~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 126 (153)
T 1awc_B 66 VDRTPLHMAASEGHANIVEVLLKH-------------------GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126 (153)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCCHHHHHHHcChHHHHHHHHHc-------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 355666666666666666666665 4556777788999999999999999999999999999
Q ss_pred cchhhcCCCHHHHHHHhCCchHHHHhh
Q psy2356 464 SHAAKEGHTALSIAQKLGYISVEESLK 490 (529)
Q Consensus 464 ~~~~~~g~t~l~~A~~~~~~~~~~~L~ 490 (529)
+.+|..|.|||++|+..|+.+++++|.
T Consensus 127 ~~~~~~g~t~l~~A~~~~~~~i~~~L~ 153 (153)
T 1awc_B 127 HTQSKFCKTAFDISIDNGNEDLAEILQ 153 (153)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence 999999999999999999999998873
No 67
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=2.7e-27 Score=202.71 Aligned_cols=161 Identities=25% Similarity=0.278 Sum_probs=146.1
Q ss_pred CCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy2356 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHL 285 (529)
Q Consensus 206 ~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~ 285 (529)
++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356 286 AARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL 365 (529)
Q Consensus 286 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 365 (529)
|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++. +.+++..+..|.||+++|+..++.+++++|
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L 186 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGRQEVIKIF 186 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999865 566667777777777777777777776666
Q ss_pred hh
Q psy2356 366 KG 367 (529)
Q Consensus 366 ~~ 367 (529)
.+
T Consensus 187 l~ 188 (192)
T 2rfm_A 187 TE 188 (192)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 68
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.7e-27 Score=200.09 Aligned_cols=167 Identities=25% Similarity=0.313 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356 212 SGFTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290 (529)
Q Consensus 212 ~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 290 (529)
.+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 345677777777777777777776 4556777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhh
Q psy2356 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTE 370 (529)
Q Consensus 291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~ 370 (529)
+.+++++|+++|++++..+..
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~----------------------------------------------------------- 104 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEH----------------------------------------------------------- 104 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTT-----------------------------------------------------------
T ss_pred CHHHHHHHHHcCCCCCccCCC-----------------------------------------------------------
Confidence 777777777777766554443
Q ss_pred HHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcH
Q psy2356 371 TLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA 450 (529)
Q Consensus 371 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~ 450 (529)
|.||||+|+..|+.+++++|+++ |++++.++..|.|||++|+..++.
T Consensus 105 --------------g~t~L~~A~~~~~~~~v~~Ll~~-------------------ga~~~~~~~~g~tpl~~A~~~~~~ 151 (179)
T 3f6q_A 105 --------------GNVPLHYACFWGQDQVAEDLVAN-------------------GALVSICNKYGEMPVDKAKAPLRE 151 (179)
T ss_dssp --------------SCCHHHHHHHTTCHHHHHHHHHT-------------------TCCSSBCCTTSCCGGGGSCHHHHH
T ss_pred --------------CCCHHHHHHHcCCHHHHHHHHHC-------------------CCCcchhccCCCCcHHHHHHHHHH
Confidence 44555556666666666666554 556678888899999999999999
Q ss_pred HHHHHHHhCCCCCcchhhcC
Q psy2356 451 DMSAMLLEHGADVSHAAKEG 470 (529)
Q Consensus 451 ~~v~~Ll~~g~~~~~~~~~g 470 (529)
+++++|+++|++++..+..+
T Consensus 152 ~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 152 LLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp HHHHHHHHTTCCCSCBCCCC
T ss_pred HHHHHHHHhhcCcccCCccc
Confidence 99999999999987765543
No 69
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=8.3e-27 Score=194.82 Aligned_cols=156 Identities=26% Similarity=0.349 Sum_probs=118.3
Q ss_pred CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356 154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233 (529)
Q Consensus 154 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll 233 (529)
+.|+|+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~--------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 56 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQE--------------------------NVINHTDEEGFTPLMWAAAHGQIAVVEFLL 56 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHS--------------------------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcchHHHHHHCCCHHHHHHHHHcC--------------------------CCcCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 456777777777777777777533 344556667778888888888888888888
Q ss_pred hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCC
Q psy2356 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH 313 (529)
Q Consensus 234 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 313 (529)
++|++++..+..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 57 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 136 (167)
T 3v31_A 57 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 136 (167)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 88777777777777888888888888888888887777777777778888888888888888888888887777777777
Q ss_pred cHHHHHHHcCChhHHHHhhhhc
Q psy2356 314 TALSIAQKLGYISVEESLGAAE 335 (529)
Q Consensus 314 t~l~~a~~~~~~~~~~~l~~~~ 335 (529)
||+++|+..|+.+++++|++..
T Consensus 137 t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 137 NSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHHH
Confidence 8888888778877777776544
No 70
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=9.8e-27 Score=194.55 Aligned_cols=153 Identities=35% Similarity=0.543 Sum_probs=112.0
Q ss_pred cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy2356 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234 (529)
Q Consensus 155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~ 234 (529)
.++++.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~--------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 68 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMAN--------------------------GADVNAEDASGWTPLHLAAFNGHLEIVEVLLK 68 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHcCCHHHHHHHHHC--------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3566777777777777777643 33445566667777777777777777777777
Q ss_pred CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCc
Q psy2356 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHT 314 (529)
Q Consensus 235 ~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 314 (529)
+|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus 69 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 148 (169)
T 2y1l_E 69 NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT 148 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCChhHHHHhhh
Q psy2356 315 ALSIAQKLGYISVEESLGA 333 (529)
Q Consensus 315 ~l~~a~~~~~~~~~~~l~~ 333 (529)
|+++|+..|+.+++++|++
T Consensus 149 ~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 149 AFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 7777777777777777754
No 71
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.8e-30 Score=226.55 Aligned_cols=191 Identities=23% Similarity=0.208 Sum_probs=114.7
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT 292 (529)
Q Consensus 213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~ 292 (529)
+.|+||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus 21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~ 100 (229)
T 2vge_A 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT 100 (229)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 34455556666666666666666666555555566666666666666666666666666655555566666666666666
Q ss_pred HHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHH
Q psy2356 293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372 (529)
Q Consensus 293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~ 372 (529)
+++++|+++|++++..+
T Consensus 101 ~~v~~Ll~~ga~~~~~~--------------------------------------------------------------- 117 (229)
T 2vge_A 101 VICMALVQHGAAIFATT--------------------------------------------------------------- 117 (229)
T ss_dssp HHHHHHHTTTCCTTCCC---------------------------------------------------------------
T ss_pred HHHHHHHHcCCCccccc---------------------------------------------------------------
Confidence 66666666555554443
Q ss_pred HHhhcCCCCCCCCchHHHHH--HHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcH
Q psy2356 373 IIAKGDGEKHKNGLTPLHLC--AQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA 450 (529)
Q Consensus 373 ~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~ 450 (529)
+..|.||||+| +..|+.+++++|+++ |++++.++..|.||++.++..+.
T Consensus 118 ---------~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-------------------ga~~~~~~~~~~~~l~~~~~~~~- 168 (229)
T 2vge_A 118 ---------LSDGATAFEKCDPYREGYADCATYLADV-------------------EQSMGLMNSGAVYALWDYSAEFG- 168 (229)
T ss_dssp ---------SSTTCCTGGGCCTTSTTHHHHHHHHHHH-------------------HHHTTTSGGGEEEESSCBCCSST-
T ss_pred ---------CCCCCCHHHHHHHHhcChHHHHHHHHHc-------------------CCCcccccCCchHHHHHHhhccc-
Confidence 12345555555 555666555555554 34456666667777775544432
Q ss_pred HHHHHHHhCCCC--CcchhhcCCCHHHHHHHhCCchHHHH-hhcccchhh
Q psy2356 451 DMSAMLLEHGAD--VSHAAKEGHTALSIAQKLGYISVEES-LKGVTETLI 497 (529)
Q Consensus 451 ~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~-L~~~~~~~~ 497 (529)
+++|++.|++ ++.+|..|.|||++|+..|+.++|+. +++..+.+.
T Consensus 169 --~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~~ 216 (229)
T 2vge_A 169 --DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVK 216 (229)
T ss_dssp --TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCCC
T ss_pred --cccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCCC
Confidence 2566777777 55667778888888888888887764 444444444
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.8e-27 Score=200.01 Aligned_cols=164 Identities=24% Similarity=0.297 Sum_probs=129.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcC
Q psy2356 245 SGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323 (529)
Q Consensus 245 ~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~ 323 (529)
.+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~------------- 70 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR------------- 70 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-------------
Confidence 355677777777777777777776 556677777777777777777777777777777776655443
Q ss_pred ChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHHH
Q psy2356 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL 403 (529)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 403 (529)
.|.||||+|+..|+.+++++
T Consensus 71 ------------------------------------------------------------~g~t~L~~A~~~~~~~~v~~ 90 (179)
T 3f6q_A 71 ------------------------------------------------------------GDDTPLHLAASHGHRDIVQK 90 (179)
T ss_dssp ------------------------------------------------------------TCCCHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------------------CCCCHHHHHHHcCCHHHHHH
Confidence 34566666666677776666
Q ss_pred HHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCc
Q psy2356 404 LLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYI 483 (529)
Q Consensus 404 Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 483 (529)
|+++ |++++.++..|.||||+|+..|+.+++++|+++|++++..|..|.||+++|+..++.
T Consensus 91 Ll~~-------------------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~ 151 (179)
T 3f6q_A 91 LLQY-------------------KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE 151 (179)
T ss_dssp HHHT-------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHH
T ss_pred HHHc-------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHH
Confidence 6665 556788888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccchhhhcc
Q psy2356 484 SVEESLKGVTETLIIAK 500 (529)
Q Consensus 484 ~~~~~L~~~~~~~~~~~ 500 (529)
+++++|++.+.++....
T Consensus 152 ~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 152 LLRERAEKMGQNLNRIP 168 (179)
T ss_dssp HHHHHHHHTTCCCSCBC
T ss_pred HHHHHHHHhhcCcccCC
Confidence 99999999999887543
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=1.9e-27 Score=198.27 Aligned_cols=157 Identities=33% Similarity=0.483 Sum_probs=87.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHc
Q psy2356 244 KSGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKL 322 (529)
Q Consensus 244 ~~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~ 322 (529)
..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~--------- 76 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL--------- 76 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC---------
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCC---------
Confidence 3445566666666666666666553 444555555556666666666666666666666655554444333
Q ss_pred CChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHHH
Q psy2356 323 GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAE 402 (529)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 402 (529)
||||+|+..|+.++++
T Consensus 77 ----------------------------------------------------------------t~L~~A~~~~~~~~v~ 92 (165)
T 3twr_A 77 ----------------------------------------------------------------VPLHNACSYGHYEVAE 92 (165)
T ss_dssp ----------------------------------------------------------------CHHHHHHHTTCHHHHH
T ss_pred ----------------------------------------------------------------CHHHHHHHcCcHHHHH
Confidence 3333334444444444
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCC
Q psy2356 403 LLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482 (529)
Q Consensus 403 ~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 482 (529)
+|+++ |++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|.+ ++
T Consensus 93 ~Ll~~-------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~ 152 (165)
T 3twr_A 93 LLVKH-------------------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GD 152 (165)
T ss_dssp HHHHT-------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TC
T ss_pred HHHhC-------------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CC
Confidence 44333 33445555556666666666666666666666666666666666666666554 55
Q ss_pred chHHHHhhccc
Q psy2356 483 ISVEESLKGVT 493 (529)
Q Consensus 483 ~~~~~~L~~~~ 493 (529)
.+++++|++.+
T Consensus 153 ~~i~~~L~~~g 163 (165)
T 3twr_A 153 TDIQDLLRGDA 163 (165)
T ss_dssp HHHHHHHHTC-
T ss_pred hHHHHHHhhcc
Confidence 56666665544
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=2e-26 Score=189.21 Aligned_cols=149 Identities=28% Similarity=0.414 Sum_probs=129.6
Q ss_pred CHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy2356 156 PALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235 (529)
Q Consensus 156 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~ 235 (529)
++|+.|+..|+.+++++|++.|.+. + .+..|.||||+|+..|+.+++++|++.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~--------------------------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 56 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPF--------------------------T-TDWLGTSPLHLAAQYGHFSTTEVLLRA 56 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCC--------------------------C-CCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCC--------------------------C-cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 5788888888888888888765432 2 355688999999999999999999999
Q ss_pred CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcH
Q psy2356 236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA 315 (529)
Q Consensus 236 g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 315 (529)
|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 57 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 136 (153)
T 1awc_B 57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136 (153)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 99998888889999999999999999999999999999988899999999999999999999999999999888899999
Q ss_pred HHHHHHcCChhHHHHh
Q psy2356 316 LSIAQKLGYISVEESL 331 (529)
Q Consensus 316 l~~a~~~~~~~~~~~l 331 (529)
+++|+..|+.+++++|
T Consensus 137 l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 137 FDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999988887
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=9.6e-26 Score=186.05 Aligned_cols=127 Identities=27% Similarity=0.463 Sum_probs=83.1
Q ss_pred CCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLH 284 (529)
Q Consensus 205 ~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~ 284 (529)
+++..+..|.||||+ +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus 28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (156)
T 1bd8_A 28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106 (156)
T ss_dssp CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 444555566666666 6666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356 285 LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA 333 (529)
Q Consensus 285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~ 333 (529)
+|+..|+.+++++|+++ ++++..+..|.||+++|+..|+.+++++|++
T Consensus 107 ~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 107 LAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 66666666666666666 6666666666666666666666666666643
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=6.7e-26 Score=187.00 Aligned_cols=149 Identities=28% Similarity=0.386 Sum_probs=134.8
Q ss_pred CCHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356 214 FTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT 292 (529)
Q Consensus 214 ~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~ 292 (529)
.|+|+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 5899999999999999999998 44889999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356 293 DIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL 365 (529)
Q Consensus 293 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 365 (529)
+++++|+++|++++..+..|.||||+|+..|+.+++++|++. .+++..+..|.|||++|+..++.+++++|
T Consensus 82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 999999999999999999999999999999999999999876 66677777777777777666666666666
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=3.6e-26 Score=190.52 Aligned_cols=155 Identities=30% Similarity=0.406 Sum_probs=133.5
Q ss_pred CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356 154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233 (529)
Q Consensus 154 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll 233 (529)
+.++|+.|+..|+.+++++|++ ..+.+++..+..|.||||+|+..|+.+++++|+
T Consensus 8 ~~~~l~~A~~~g~~~~v~~ll~-------------------------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKLCT-------------------------VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCC-------------------------TTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHhCCHHHHHHHHH-------------------------cCCCCccccccCCCCHHHHHHHcChHHHHHHHH
Confidence 3456666777777777776665 233445566777889999999999999999999
Q ss_pred hCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCC
Q psy2356 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH 313 (529)
Q Consensus 234 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 313 (529)
++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 63 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 142 (165)
T 3twr_A 63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142 (165)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred hcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCChhHHHHhhhh
Q psy2356 314 TALSIAQKLGYISVEESLGAA 334 (529)
Q Consensus 314 t~l~~a~~~~~~~~~~~l~~~ 334 (529)
||+++|.. ++.+++++|++.
T Consensus 143 t~l~~a~~-~~~~i~~~L~~~ 162 (165)
T 3twr_A 143 TPLDLVKD-GDTDIQDLLRGD 162 (165)
T ss_dssp CTGGGSCT-TCHHHHHHHHTC
T ss_pred ChhHhHhc-CChHHHHHHhhc
Confidence 99999766 888999999654
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.8e-27 Score=211.01 Aligned_cols=187 Identities=23% Similarity=0.289 Sum_probs=112.1
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2356 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ 291 (529)
Q Consensus 212 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~ 291 (529)
.|.||||.|+..++.+.++.|+++|++++.. ..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 4667777777777777777777777777654 556777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhH
Q psy2356 292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTET 371 (529)
Q Consensus 292 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~ 371 (529)
.+++++|+++|++++..+..
T Consensus 83 ~~~v~~Ll~~ga~~~~~d~~------------------------------------------------------------ 102 (239)
T 1ycs_B 83 TEIVKFLVQFGVNVNAADSD------------------------------------------------------------ 102 (239)
T ss_dssp HHHHHHHHHHTCCTTCCCTT------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCCCccCCC------------------------------------------------------------
Confidence 77777777777776655444
Q ss_pred HHHhhcCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCC-CHHHHH--HHcC
Q psy2356 372 LIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF-TPLHLS--ASEG 448 (529)
Q Consensus 372 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~-t~L~~A--~~~~ 448 (529)
|.||||+|+..|+.+++++|+++ |++++.++..|. ||||+| +..|
T Consensus 103 -------------g~tpL~~A~~~~~~~~v~~Ll~~-------------------ga~~~~~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 103 -------------GWTPLHCAASCNNVQVCKFLVES-------------------GAAVFAMTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp -------------CCCHHHHHHHTTCHHHHHHHHHT-------------------TCCTTCCCSSSCCCHHHHCCSSSTT
T ss_pred -------------CCCHHHHHHHcCCHHHHHHHHHc-------------------CCCcceecCCCCcchHHHHHHhhhc
Confidence 44555666666666666666665 556677777676 999999 7889
Q ss_pred cHHHHHHHHhCCCCCcch---------hhcCCCHHHHHHHhCCchHHHHhhccc
Q psy2356 449 HADMSAMLLEHGADVSHA---------AKEGHTALSIAQKLGYISVEESLKGVT 493 (529)
Q Consensus 449 ~~~~v~~Ll~~g~~~~~~---------~~~g~t~l~~A~~~~~~~~~~~L~~~~ 493 (529)
+.+++++|+++|++++.. +..+.+++++|.+.|. +++.|....
T Consensus 151 ~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~ 202 (239)
T 1ycs_B 151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED 202 (239)
T ss_dssp CCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT
T ss_pred cHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC
Confidence 999999999999988876 4457888888777665 344444443
No 79
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.9e-28 Score=214.85 Aligned_cols=182 Identities=21% Similarity=0.107 Sum_probs=150.8
Q ss_pred cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy2356 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234 (529)
Q Consensus 155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~ 234 (529)
.|+|+.|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|++
T Consensus 22 ~t~L~~A~~~g~~~~v~~Ll~~g--------------------------~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 75 (229)
T 2vge_A 22 LVLLLDAALTGELEVVQQAVKEM--------------------------NDPSQPNEEGITALHNAICGANYSIVDFLIT 75 (229)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHS--------------------------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcC--------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45666677777777777776433 4556678889999999999999999999999
Q ss_pred CCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHcCCHHHHHHHHHCCCCccccccc
Q psy2356 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLA--ARANQTDIIRILLRNGAQVDARARE 311 (529)
Q Consensus 235 ~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~ 311 (529)
.|++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+| +..|+.+++++|+++|++++..+..
T Consensus 76 ~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~ 155 (229)
T 2vge_A 76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG 155 (229)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCC
Confidence 999999999999999999999999999999999999999987 5999999999 9999999999999999999999999
Q ss_pred CCcHHHHHHHcCChhHHHHhhhhc-ccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356 312 GHTALSIAQKLGYISVEESLGAAE-RSQLKKRGREGHTALSIAQKLGYISVEESL 365 (529)
Q Consensus 312 g~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 365 (529)
|.++++.++..+.. +.++... ..+++..+..|+||||+|+..|+.++++..
T Consensus 156 ~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 156 AVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp EEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred chHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 99998865544433 3343332 223677788888888888888888877653
No 80
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=1.7e-26 Score=194.67 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=118.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCH----HHHHHHHHCCCCcccccccCCcHHHHHHH
Q psy2356 247 LTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLAARANQT----DIIRILLRNGAQVDARAREGHTALSIAQK 321 (529)
Q Consensus 247 ~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~ 321 (529)
.++|+.|+..|+.+.++.+++.+. +..+ ..|.||||+|+..++. +++++|+++|++++.++..|+||||+|+.
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 456666777777776666666543 3333 4567777777777654 47777777777777777666666666655
Q ss_pred cCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHcCCHHHH
Q psy2356 322 LGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVA 401 (529)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~ 401 (529)
.++.++.+. .
T Consensus 85 ~~~~~~~~~-------------------------------------------------------------------~--- 94 (186)
T 3t8k_A 85 GGGNDITGT-------------------------------------------------------------------T--- 94 (186)
T ss_dssp HCTTCHHHH-------------------------------------------------------------------H---
T ss_pred cCCcchhhH-------------------------------------------------------------------H---
Confidence 443322110 1
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCC-CHHHHHHHcC-----cHHHHHHHHh-CCCCCcchhhcCCCHH
Q psy2356 402 ELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF-TPLHLSASEG-----HADMSAMLLE-HGADVSHAAKEGHTAL 474 (529)
Q Consensus 402 ~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~g~~~~~~~~~g~t~l 474 (529)
+++++|+++|+|+|.+|..|+ ||||+|+..+ ..+++++|++ +|++++.+|..|.|||
T Consensus 95 ----------------~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 95 ----------------ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp ----------------HHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred ----------------HHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 344555566778899999999 9999999843 4579999999 8999999999999999
Q ss_pred HHHHHhCCchHHHHhhcccchhhhc
Q psy2356 475 SIAQKLGYISVEESLKGVTETLIIA 499 (529)
Q Consensus 475 ~~A~~~~~~~~~~~L~~~~~~~~~~ 499 (529)
|+|++.|+.+++++|+++...+.+.
T Consensus 159 ~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999887766543
No 81
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=3.2e-26 Score=202.95 Aligned_cols=100 Identities=29% Similarity=0.415 Sum_probs=85.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCC
Q psy2356 382 HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA 461 (529)
Q Consensus 382 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 461 (529)
+..|.||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..|+.++|++|+++|+
T Consensus 67 d~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 127 (239)
T 1ycs_B 67 NDEGITALHNAVCAGHTEIVKFLVQF-------------------GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127 (239)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHH-------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 34456666777777777777766665 56778889999999999999999999999999999
Q ss_pred CCcchhhcCC-CHHHHH--HHhCCchHHHHhhcccchhhhcc
Q psy2356 462 DVSHAAKEGH-TALSIA--QKLGYISVEESLKGVTETLIIAK 500 (529)
Q Consensus 462 ~~~~~~~~g~-t~l~~A--~~~~~~~~~~~L~~~~~~~~~~~ 500 (529)
+++..+..|. |||++| +..|+.+++++|++.++++...+
T Consensus 128 ~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~ 169 (239)
T 1ycs_B 128 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169 (239)
T ss_dssp CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred CcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccc
Confidence 9999998877 999999 78899999999999999887653
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=6.8e-25 Score=175.98 Aligned_cols=129 Identities=26% Similarity=0.308 Sum_probs=77.6
Q ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcH
Q psy2356 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR-GETP 282 (529)
Q Consensus 204 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~-~~t~ 282 (529)
.+++..+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+. ++.+++++|++.|++++..+.. |.||
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 3455555556666666666666666666666666666665666666666666 6666666666666666665555 5666
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356 283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA 333 (529)
Q Consensus 283 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~ 333 (529)
||+|+..|+.+++++|+++|++++..+..|.||+++|+..++.+++++|++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~ 132 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666666665555555555555555555555555543
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=4.4e-25 Score=181.70 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=81.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHc
Q psy2356 243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKL 322 (529)
Q Consensus 243 ~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~ 322 (529)
+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+ .|+.+++++|+++|++++..+..
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~----------- 76 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA----------- 76 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT-----------
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCC-----------
Confidence 344555555555555555555555555555555555555555553 55555555555555555444333
Q ss_pred CChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCch-HHHHHHHcCCHHHH
Q psy2356 323 GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLT-PLHLCAQEDRVGVA 401 (529)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~ 401 (529)
|.| |||+|+..|+.+++
T Consensus 77 --------------------------------------------------------------g~ttpL~~A~~~~~~~~v 94 (156)
T 1bi7_B 77 --------------------------------------------------------------TLTRPVHDAAREGFLDTL 94 (156)
T ss_dssp --------------------------------------------------------------TCCCHHHHHHHHTCHHHH
T ss_pred --------------------------------------------------------------CCcHHHHHHHHCCCHHHH
Confidence 444 66666666666666
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHH
Q psy2356 402 ELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477 (529)
Q Consensus 402 ~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 477 (529)
++|+++ |++++.++..|+||||+|+..|+.+++++|+++|++++..+..|.||.+.+
T Consensus 95 ~~Ll~~-------------------ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 95 VVLHRA-------------------GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHH-------------------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHHc-------------------CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 666654 556678888899999999999999999999999999999999999987754
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.5e-24 Score=173.98 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=124.1
Q ss_pred CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccccc-CCc
Q psy2356 236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARARE-GHT 314 (529)
Q Consensus 236 g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t 314 (529)
+++++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+. ++.+++++|+++|++++..+.. |.|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 46788999999999999999999999999999999999999999999999999 9999999999999999999999 999
Q ss_pred HHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHhhhh
Q psy2356 315 ALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGV 368 (529)
Q Consensus 315 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~ 368 (529)
|||+|+..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|.+.
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 99999999999999999865 477889999999999999999999999998654
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=4.4e-24 Score=175.71 Aligned_cols=144 Identities=26% Similarity=0.304 Sum_probs=119.8
Q ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-HHHHH
Q psy2356 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET-PLHLA 286 (529)
Q Consensus 208 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t-~l~~a 286 (529)
..+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|++.|++++..+..|.| |||+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 45667899999999999999999999999999999999999999985 99999999999999999999999999 99999
Q ss_pred HHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHH
Q psy2356 287 ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIA 353 (529)
Q Consensus 287 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a 353 (529)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++. +.+++..+..|.++.+.+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C-----------------
T ss_pred HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccC
Confidence 999999999999999999999999999999999999999999999765 567788888888887643
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=2.3e-23 Score=166.96 Aligned_cols=121 Identities=32% Similarity=0.503 Sum_probs=109.3
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
..|.|+||.||..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t--------- 82 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFT--------- 82 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC---------
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC---------
Confidence 46889999999999999999999999999999999999999999999999999999999999877766555
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLEND 148 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~ 148 (529)
|||+|+..|+.+++++|++++++ +..|.|||++|+..|+.+++++|++.+
T Consensus 83 -----------------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 83 -----------------PLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp -----------------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred -----------------HHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 55567889999999999999766 678899999999999999999998753
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=3.2e-23 Score=166.17 Aligned_cols=123 Identities=36% Similarity=0.441 Sum_probs=119.0
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356 211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290 (529)
Q Consensus 211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 290 (529)
..+.|+||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA 333 (529)
Q Consensus 291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~ 333 (529)
+.+++++|+++|++++..+..|.||+++|+..|+.+++++|++
T Consensus 92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=5.7e-24 Score=179.27 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=138.1
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356 213 GFTPLHIASHYGNEGVANILLDKRADVNFSA-KSGLTPLHVASFMGCM----NIVIYLLQNDANPDIPTVRGETPLHLAA 287 (529)
Q Consensus 213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~~~l~~a~~~~~~----~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 287 (529)
+.++|+.|+..|+.+.++.++..+. +..+ ..|+||||+|+.+++. +++++|++.|++++.++..|+||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 3588999999999999999998764 4444 6799999999999975 5999999999999999999999999999
Q ss_pred HcCC------HHHHHHHHHCCCCcccccccCC-cHHHHHHHcCC-----hhHHHHhhhhcccccccCCCCCCcHHHHHHH
Q psy2356 288 RANQ------TDIIRILLRNGAQVDARAREGH-TALSIAQKLGY-----ISVEESLGAAERSQLKKRGREGHTALSIAQK 355 (529)
Q Consensus 288 ~~~~------~~~~~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~ 355 (529)
..++ .+++++|+++|++++.+|..|. ||||+|+..+. .+++++|++..+.+++..+..|.||||+|++
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~ 163 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence 9886 6899999999999999999999 99999999543 5689999887888999999999999999999
Q ss_pred hCchhHHHHhhhhhh
Q psy2356 356 LGYISVEESLKGVTE 370 (529)
Q Consensus 356 ~~~~~~~~~l~~~~~ 370 (529)
.++.++++.|.+...
T Consensus 164 ~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 164 CQKPIALKMMEDYIK 178 (186)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999988866544
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=6.5e-23 Score=162.38 Aligned_cols=121 Identities=44% Similarity=0.678 Sum_probs=110.1
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF 82 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~ 82 (529)
+|.||||.||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~----------- 69 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR----------- 69 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-----------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCC-----------
Confidence 699999999999999999999999999999999999999999999999999999999999987766554
Q ss_pred cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCC
Q psy2356 83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDT 149 (529)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~ 149 (529)
|||++|+..|+.+++++|++.+.+ +..|.||+++|+..|+.+++++|+++++
T Consensus 70 ---------------t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 70 ---------------TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp ---------------CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ---------------cHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 555667889999999999999766 6778999999999999999999998765
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.5e-22 Score=160.32 Aligned_cols=124 Identities=40% Similarity=0.620 Sum_probs=119.3
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2356 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ 291 (529)
Q Consensus 212 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~ 291 (529)
+|.||||.|+..|+.+++++|+++|++++..+..|.|||+.|+..++.+++++|++.|++++..+..|.||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356 292 TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAE 335 (529)
Q Consensus 292 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 335 (529)
.+++++|+++|++++..+..|.||+++|+..|+.+++++|++..
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999997643
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.6e-23 Score=168.35 Aligned_cols=129 Identities=31% Similarity=0.381 Sum_probs=119.4
Q ss_pred CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPL 283 (529)
Q Consensus 204 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l 283 (529)
.++ .++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.|||
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL 80 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHH
Confidence 344 5778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhh
Q psy2356 284 HLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGA 333 (529)
Q Consensus 284 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~ 333 (529)
|+|+..|+.+++++|+++|++++..+..|.||+++|+..+..++++++.+
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 99999999999999999999999999999999999999888888887744
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.7e-23 Score=168.19 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=47.9
Q ss_pred CCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccc
Q psy2356 427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTE 494 (529)
Q Consensus 427 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 494 (529)
|++++.++..|+||||+|+..|+.+++++|+++|++++..|..|.||+++|+..+..+++++|.+...
T Consensus 66 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 44556666677788888888888888888888888888777888888888877777777777665543
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=3.1e-23 Score=175.55 Aligned_cols=137 Identities=24% Similarity=0.305 Sum_probs=121.6
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHH
Q psy2356 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLAAR 288 (529)
Q Consensus 210 ~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~ 288 (529)
+..|.||||.|+..|+.++++.|++ |++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 3467899999999999999999999 99999999999999999999999999999999999999888 889999999999
Q ss_pred cCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356 289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL 365 (529)
Q Consensus 289 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 365 (529)
.|+.+++++|+++|++++.++..|.||+++|+..++. ..+.+++++++..|..+++++|
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence 9999999999999999999999999999999874432 2345677777777777777666
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=179.11 Aligned_cols=140 Identities=25% Similarity=0.218 Sum_probs=122.9
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCcc------cCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy2356 213 GFTPLHIASHYGNEGVANILLDKRADVNF------SAKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIPTVRGETPL 283 (529)
Q Consensus 213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~l 283 (529)
..++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. ++.+++++|+++|++++..|..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 35679999999999999999999999987 688999999999997 899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCch
Q psy2356 284 HLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI 359 (529)
Q Consensus 284 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 359 (529)
|+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|++.... .|.||||+|+..|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999775532 467888888777653
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=3.2e-22 Score=157.29 Aligned_cols=116 Identities=24% Similarity=0.309 Sum_probs=106.8
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q psy2356 211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290 (529)
Q Consensus 211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 290 (529)
..+.|+||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..+
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChh
Q psy2356 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYIS 326 (529)
Q Consensus 291 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~ 326 (529)
+.+++++|+++|++++..+..|.||+++|...+..+
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 85 HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence 999999999999999999999999999995443333
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=7.3e-22 Score=175.17 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=120.0
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHc
Q psy2356 211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT-VRGETPLHLAARA 289 (529)
Q Consensus 211 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~a~~~ 289 (529)
..|.||||+|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 357899999999999999999999 99999999999999999999999999999999999999988 7899999999999
Q ss_pred CCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccccccCCCCCCcHHHHHHHhCchhHHHHh
Q psy2356 290 NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL 365 (529)
Q Consensus 290 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 365 (529)
|+.+++++|+++|++++..+..|.||+|+|+..+. ...+.+||++|+..|+.++++++
T Consensus 122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L 179 (244)
T 3ui2_A 122 VRPEVVEALVELGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVL 179 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHH
Confidence 99999999999999999999999999999975222 13456666666666666666665
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=8e-22 Score=166.83 Aligned_cols=133 Identities=23% Similarity=0.284 Sum_probs=118.5
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCC-CCCCchHHHHhhcC
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSAT-KKGNTALHIASLGE 81 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~-~~~~~~l~~a~~~~ 81 (529)
+|.||||.||..|+.+++++|++ |.+++..|..|+||||+|+..|+.+++++|+++|++++.++ ..
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~------------ 109 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG------------ 109 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC------------
Confidence 68999999999999999999999 99999999999999999999999999999999999998766 44
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcCH
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPA 157 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 157 (529)
|.||||+|+..|+.+++++|++++++ +..|.|||++|+..++. ....++
T Consensus 110 --------------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------------~~~~~~ 162 (183)
T 3deo_A 110 --------------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------TPKGNP 162 (183)
T ss_dssp --------------SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-------------CCCCSH
T ss_pred --------------CCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-------------cccccH
Confidence 44566677899999999999999776 78899999999986544 344689
Q ss_pred HHHHhhCCChHHHHHHHh
Q psy2356 158 LHIAAKKDDTKAAKLLLE 175 (529)
Q Consensus 158 l~~a~~~~~~~~~~~ll~ 175 (529)
+++|+..|..+++++|.+
T Consensus 163 l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 163 MQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCHHHHHHHHHH
Confidence 999999999999999875
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=9.4e-22 Score=154.57 Aligned_cols=114 Identities=28% Similarity=0.469 Sum_probs=98.9
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
+.|.|+||.||..|+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t--------- 75 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT--------- 75 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCC---------
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC---------
Confidence 46899999999999999999999999999999999999999999999999999999999999887766555
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHH
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVV 141 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v 141 (529)
|||+|+..|+.+++++|++++++ +..|.||+++|...+..+++
T Consensus 76 -----------------pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll 122 (123)
T 3aaa_C 76 -----------------PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122 (123)
T ss_dssp -----------------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred -----------------HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence 55566889999999999999876 77899999999554444443
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=1.3e-21 Score=173.46 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=121.7
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCC-CCCCchHHHHhhc
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSAT-KKGNTALHIASLG 80 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~-~~~~~~l~~a~~~ 80 (529)
.+|.||||.||+.|+.++|++|++ |++++..|..|+||||+|+..|+.++|++|+++|++++.++ ..
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~----------- 110 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG----------- 110 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS-----------
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCC-----------
Confidence 368999999999999999999999 99999999999999999999999999999999999998766 44
Q ss_pred CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC----CCCCCcHHHHHHHcCcHHHHHHHHhcCCCCCCCcC
Q psy2356 81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR----GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLP 156 (529)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 156 (529)
|.||||+|+..|+.+++++|++++++ +..|.|||++|+..++. ....+
T Consensus 111 ---------------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-------------~~~~~ 162 (244)
T 3ui2_A 111 ---------------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------TPKGN 162 (244)
T ss_dssp ---------------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT-------------CCCSS
T ss_pred ---------------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc-------------cCCCC
Confidence 45566677899999999999999876 78899999999863322 45679
Q ss_pred HHHHHhhCCChHHHHHHHhccCC
Q psy2356 157 ALHIAAKKDDTKAAKLLLEVSCT 179 (529)
Q Consensus 157 ~l~~a~~~~~~~~~~~ll~~~~~ 179 (529)
++++|+..|+.+++++|.+.+..
T Consensus 163 ~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 163 PMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHcChHHHHHHHHHhccc
Confidence 99999999999999999986543
No 100
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=4.9e-21 Score=141.95 Aligned_cols=93 Identities=43% Similarity=0.669 Sum_probs=83.8
Q ss_pred CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcCc
Q psy2356 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEF 82 (529)
Q Consensus 3 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~~ 82 (529)
+|.||||.||..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t---------- 70 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT---------- 70 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC----------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC----------
Confidence 6999999999999999999999999999999999999999999999999999999999999887766555
Q ss_pred cccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCC
Q psy2356 83 LVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR 121 (529)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~ 121 (529)
||++|+..|+.+++++|++.|++
T Consensus 71 ----------------~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 71 ----------------PLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ----------------HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ----------------HHHHHHHcCCHHHHHHHHHcCCC
Confidence 55566889999999999998763
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=1.8e-20 Score=169.02 Aligned_cols=130 Identities=23% Similarity=0.210 Sum_probs=101.1
Q ss_pred cHHHHHHHhCchhHHHHhhhhhhHHHHhhcCCCCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCchhHHHHHHH
Q psy2356 348 TALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQE---DRVGVAELLLKNNAQVDTPTKMDIATTLL 424 (529)
Q Consensus 348 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~ 424 (529)
++|+.|+..++.+.+..+.............+..+..|.||||+|+.. |+.+++++|+++
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~----------------- 194 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN----------------- 194 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-----------------
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-----------------
Confidence 455666666666555544211110000000233467799999999999 788888877775
Q ss_pred HcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhCCCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchh
Q psy2356 425 EYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETL 496 (529)
Q Consensus 425 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 496 (529)
|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++++..
T Consensus 195 --ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 195 --SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp --CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred --CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 5677888999999999999999999999999999999999999999999999999999999999998753
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=7.2e-21 Score=173.59 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=121.8
Q ss_pred cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHc---CCHHHHHH
Q psy2356 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHY---GNEGVANI 231 (529)
Q Consensus 155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~v~~ 231 (529)
.++|+.|+..++.+.++.|++.|.+++.... ....+..|.||||+|+.. ++.+++++
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~--------------------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~ 211 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLP--------------------GPDAQAPEELVLHLAVKVANQASLPLVDF 211 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE--------------------CSSSCSCEECHHHHHHHTCCTTTHHHHHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCC--------------------CcccCCCCccHHHHHHHhcccCcHHHHHH
Confidence 4579999999999999999976665432110 001467889999999997 89999999
Q ss_pred HHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccccc
Q psy2356 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARARE 311 (529)
Q Consensus 232 Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~ 311 (529)
|+++|++++..|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++ .
T Consensus 212 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~ 285 (301)
T 2b0o_E 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------T 285 (301)
T ss_dssp HHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------T
T ss_pred HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875 5
Q ss_pred CCcHHHHHHHcCCh
Q psy2356 312 GHTALSIAQKLGYI 325 (529)
Q Consensus 312 g~t~l~~a~~~~~~ 325 (529)
|.||||+|+..|+.
T Consensus 286 g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 286 FAFPLHVDYSWVIS 299 (301)
T ss_dssp TSSCCC--------
T ss_pred CCChhHHHHhcCCc
Confidence 78999999988864
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=2.8e-20 Score=167.71 Aligned_cols=123 Identities=27% Similarity=0.301 Sum_probs=101.2
Q ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCc------ccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356 214 FTPLHIASHYGNEGVANILLDKRADVN------FSAKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIPTVRGETPLH 284 (529)
Q Consensus 214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~l~ 284 (529)
.++|+.|+..|+.+.++.++..|++++ ..+..|.||||+|+.. ++.+++++|+++|++++..|..|.||||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh 210 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence 357888888888888888888888743 3467788888888888 7888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcc
Q psy2356 285 LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAER 336 (529)
Q Consensus 285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~ 336 (529)
+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++...
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 8888888888888888888888888888888888888888888888876554
No 104
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=5e-21 Score=167.67 Aligned_cols=126 Identities=31% Similarity=0.340 Sum_probs=116.2
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHH
Q psy2356 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAAR 288 (529)
Q Consensus 210 ~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~a~~ 288 (529)
+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356 289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAE 335 (529)
Q Consensus 289 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 335 (529)
.|+.+++++|+++|++++..+..|.||+++|+..++.++++.++...
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~ 196 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999996544
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=8.5e-20 Score=135.24 Aligned_cols=92 Identities=42% Similarity=0.672 Sum_probs=82.1
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2356 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT 292 (529)
Q Consensus 213 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~ 292 (529)
|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 67899999999999999999999999998888899999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHCCCC
Q psy2356 293 DIIRILLRNGAQ 304 (529)
Q Consensus 293 ~~~~~Ll~~g~~ 304 (529)
+++++|+++|++
T Consensus 82 ~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 82 EVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999988874
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=1.1e-19 Score=169.40 Aligned_cols=144 Identities=27% Similarity=0.275 Sum_probs=119.4
Q ss_pred CCCCCHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356 211 KSGFTPLHIASHY-GNEGVANILLDKRADVNFSA--KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA 287 (529)
Q Consensus 211 ~~~~t~l~~A~~~-~~~~~v~~Ll~~g~~~~~~~--~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 287 (529)
..+.|+||.|+.. ++.++++.|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3456899999999 99999999999999999988 88999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhcccc--cccCCCCCCcHHHHHH
Q psy2356 288 RANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ--LKKRGREGHTALSIAQ 354 (529)
Q Consensus 288 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~a~ 354 (529)
..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+...... ....+..+.++++.+.
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999997654322 2233344455555443
No 107
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.81 E-value=3.7e-20 Score=162.15 Aligned_cols=133 Identities=25% Similarity=0.311 Sum_probs=105.6
Q ss_pred CcCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2356 154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233 (529)
Q Consensus 154 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll 233 (529)
+.|+|++|+..|+.+++++|++ .+.+++.++..|.||||+|+..|+.+++++|+
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~--------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 126 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLD--------------------------NRVGVNGLDKAGSTALYWACHGGHKDIVEMLF 126 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHH--------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHT
T ss_pred cccccccccccCcHHHHHHHHh--------------------------CCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3466666776777777777774 45566778889999999999999999999999
Q ss_pred hC-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccccccC
Q psy2356 234 DK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREG 312 (529)
Q Consensus 234 ~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g 312 (529)
+. |++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..++.++++.|++.|+.....+..+
T Consensus 127 ~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp TSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred cCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999877666544
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=6.5e-20 Score=142.13 Aligned_cols=109 Identities=39% Similarity=0.512 Sum_probs=102.7
Q ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q psy2356 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA 287 (529)
Q Consensus 208 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 287 (529)
+++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHCCCCcccccccCCcHH
Q psy2356 288 RANQTDIIRILLRNGAQVDARAREGHTAL 316 (529)
Q Consensus 288 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 316 (529)
..++.+++++|+++|++++..+..|.+|-
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999988874
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=1.4e-18 Score=170.59 Aligned_cols=122 Identities=28% Similarity=0.269 Sum_probs=116.1
Q ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCccc------CCCCCcHHHHHHH---cCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy2356 214 FTPLHIASHYGNEGVANILLDKRADVNFS------AKSGLTPLHVASF---MGCMNIVIYLLQNDANPDIPTVRGETPLH 284 (529)
Q Consensus 214 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~~~~~l~~a~~---~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~ 284 (529)
.+.|+.|+..|+.+.++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++..|..|.||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 36799999999999999999999999877 7889999999976 89999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCcccccccCCcHHHHHHHcCChhHHHHhhhhc
Q psy2356 285 LAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAE 335 (529)
Q Consensus 285 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 335 (529)
+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++..
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g 263 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999997654
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=3.5e-19 Score=137.96 Aligned_cols=107 Identities=35% Similarity=0.458 Sum_probs=97.7
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2356 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459 (529)
Q Consensus 380 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 459 (529)
..+..|.||||+|+..|+.+++++|+++ |++++.++..|.||||+|+..|+.+++++|+++
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-------------------g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~ 64 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-------------------GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTT-------------------TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 4678899999999999999999999886 456678888999999999999999999999999
Q ss_pred CCCCcchhhcCCCHHHHHHHhCCchHHHHhhcccchhhhccCCCCc
Q psy2356 460 GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEK 505 (529)
Q Consensus 460 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 505 (529)
|++++..|..|.|||++|+..++.+++++|++++.++...+..++.
T Consensus 65 g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~ 110 (115)
T 2l6b_A 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSH 110 (115)
T ss_dssp TCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC-
T ss_pred CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccc
Confidence 9999999999999999999999999999999999999987766654
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=1.9e-18 Score=160.91 Aligned_cols=139 Identities=22% Similarity=0.271 Sum_probs=113.1
Q ss_pred CHHHHHhhC-CChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCC--CCCCCHHHHHHHcCCHHHHHHH
Q psy2356 156 PALHIAAKK-DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS--KSGFTPLHIASHYGNEGVANIL 232 (529)
Q Consensus 156 ~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~t~l~~A~~~~~~~~v~~L 232 (529)
++|+.|+.. ++.++++.|++.|. +++..+ ..|.||||+|+..|+.+++++|
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Ga--------------------------dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~L 254 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGA--------------------------DVNWVNGGQDNATPLIQATAANSLLACEFL 254 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTC--------------------------CTTCCCTTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHccCCHHHHHHHHHcCC--------------------------CCCccccccCCCCHHHHHHHCCCHHHHHHH
Confidence 589999999 99999999996554 455555 6889999999999999999999
Q ss_pred HhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC---Cccccc
Q psy2356 233 LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA---QVDARA 309 (529)
Q Consensus 233 l~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~---~~~~~~ 309 (529)
+++|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.+. +....+
T Consensus 255 L~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~ 334 (368)
T 3jue_A 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334 (368)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753 333444
Q ss_pred ccCCcHHHHHH
Q psy2356 310 REGHTALSIAQ 320 (529)
Q Consensus 310 ~~g~t~l~~a~ 320 (529)
..+.|++.++.
T Consensus 335 ~~~~t~l~i~~ 345 (368)
T 3jue_A 335 AGDETYLDIFR 345 (368)
T ss_dssp -----------
T ss_pred CCCCCHHHHHH
Confidence 55666666554
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=1.2e-18 Score=171.24 Aligned_cols=134 Identities=17% Similarity=0.127 Sum_probs=116.3
Q ss_pred cCHHHHHhhCCChHHHHHHHhccCCCCCCcccccccCCchhhHHHHhCCCCCCcCCCCCCCHHHHHHH---cCCHHHHHH
Q psy2356 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH---YGNEGVANI 231 (529)
Q Consensus 155 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~A~~---~~~~~~v~~ 231 (529)
.+.|+.|+..|+.+.++.|++.|.+++.... ....+..|.||||+|+. .|+.+++++
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~--------------------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~ 192 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLP--------------------GPDAQAPEELVLHLAVKVANQASLPLVDF 192 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBC--------------------CSSSCCSCBCHHHHHHHTCCTTTHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCC--------------------CcccccccchHHHHHHHhcccccHHHHHH
Confidence 3679999999999999999987766543211 11236789999999976 899999999
Q ss_pred HHhCCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc
Q psy2356 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDAR 308 (529)
Q Consensus 232 Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~ 308 (529)
|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 193 Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998763
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=7.9e-18 Score=128.78 Aligned_cols=88 Identities=35% Similarity=0.592 Sum_probs=80.2
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhcC
Q psy2356 2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGE 81 (529)
Q Consensus 2 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~~ 81 (529)
.+|.|+||.||..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp-------- 93 (110)
T 2zgd_A 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA-------- 93 (110)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH--------
T ss_pred CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH--------
Confidence 589999999999999999999999999999999999999999999999999999999999998877665554
Q ss_pred ccccccccccccCCCCCHHHHHHHcCcHHHHHHH
Q psy2356 82 FLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVL 115 (529)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~L 115 (529)
|++|+..|+.+++++|
T Consensus 94 ------------------l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 ------------------FDISIDNGNEDLAEIL 109 (110)
T ss_dssp ------------------HHHHHHHTCHHHHHHH
T ss_pred ------------------HHHHHHcCCHHHHHHh
Confidence 5566888899999876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=6.5e-18 Score=129.23 Aligned_cols=93 Identities=33% Similarity=0.423 Sum_probs=83.2
Q ss_pred CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCchhHHHHHHHHcCCCCCCcccCCCCHHHHHHHcCcHHHHHHHHh
Q psy2356 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE 458 (529)
Q Consensus 379 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 458 (529)
...+..|.|+||+|+..|+.+++++|+++ |++++.++..|+||||+|+..|+.+++++|++
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-------------------g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~ 78 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-------------------GADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHT-------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHc-------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45677899999999999999999988886 45668888899999999999999999999999
Q ss_pred CCCCCcchhhcCCCHHHHHHHhCCchHHHHhh
Q psy2356 459 HGADVSHAAKEGHTALSIAQKLGYISVEESLK 490 (529)
Q Consensus 459 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 490 (529)
+|++++.+|..|.|||++|+..|+.+++++|.
T Consensus 79 ~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L~ 110 (110)
T 2zgd_A 79 AGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110 (110)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHC
T ss_pred cCCCccccccCCCcHHHHHHHcCCHHHHHHhC
Confidence 99999999999999999999999999999873
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=62.60 E-value=5.2 Score=22.06 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=12.6
Q ss_pred HHHHHHHcCCHHHHHHHH
Q psy2356 7 SFLRAARAGHLDKIIEHL 24 (529)
Q Consensus 7 ~L~~A~~~g~~~~v~~ll 24 (529)
.+..||+.|+.+.++.|-
T Consensus 16 qiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 356777777777777663
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=53.25 E-value=26 Score=27.98 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=85.5
Q ss_pred CCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCChhHHHHHHHCCCCCCCCCCCCCchHHHHhhc
Q psy2356 1 SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG 80 (529)
Q Consensus 1 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~l~~a~~~ 80 (529)
+.|..+=|..|...|+++....+.+.-.+ ...-+..-..|...|++++++.-+.+--|+.
T Consensus 5 ~~D~~~rF~LAL~lg~l~~A~e~a~~l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~---------------- 64 (177)
T 3mkq_B 5 VQDPHIRFDLALEYGNLDAALDEAKKLND----SITWERLIQEALAQGNASLAEMIYQTQHSFD---------------- 64 (177)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH----------------
T ss_pred cCChHHHHHHHHhcCCHHHHHHHHHHhCC----HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH----------------
Confidence 35778889999999999998888763211 0111224445788999999999988744432
Q ss_pred CccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhcCCCCCCCCcHHHHHHHcCcH-HHHHHHHhcCCCCCCCcCHHH
Q psy2356 81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHD-KVVAVLLENDTRGKVRLPALH 159 (529)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~l~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~l~ 159 (529)
..+......|+.+-++.+.+...........++.+...|+. +.+++|.+.+.- .-+..
T Consensus 65 -----------------~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~----~eA~~ 123 (177)
T 3mkq_B 65 -----------------KLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSL----PLAYA 123 (177)
T ss_dssp -----------------HHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH----HHHHH
T ss_pred -----------------HHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCCh----HHHHH
Confidence 22333444666676666655433333444677777777764 556666654321 13566
Q ss_pred HHhhCCChHHHHHHHh
Q psy2356 160 IAAKKDDTKAAKLLLE 175 (529)
Q Consensus 160 ~a~~~~~~~~~~~ll~ 175 (529)
.|-..|..++.+.+++
T Consensus 124 ~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 124 VAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHH
Confidence 7777888888888875
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=46.10 E-value=9.5 Score=30.47 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=8.5
Q ss_pred HHhhCCChHHHHHHHh
Q psy2356 160 IAAKKDDTKAAKLLLE 175 (529)
Q Consensus 160 ~a~~~~~~~~~~~ll~ 175 (529)
.|...|+.++++..+.
T Consensus 43 ~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 43 EALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH
Confidence 4445555555555554
No 118
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=42.19 E-value=72 Score=30.61 Aligned_cols=100 Identities=8% Similarity=-0.017 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCCcccCCCCCcHHHHHHHcCCHHH----HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH----HHHHH
Q psy2356 227 GVANILLDKRADVNFSAKSGLTPLHVASFMGCMNI----VIYLLQNDANPDIPTVRGETPLHLAARANQTD----IIRIL 298 (529)
Q Consensus 227 ~~v~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~----v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~----~~~~L 298 (529)
++++.+...|..++.... .+.+...+..|..+- ++.+.+.|..++... -.+.+...++.|..+ +++.+
T Consensus 91 ~lf~~M~~~G~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATF--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHTTCCCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555555555443211 123344455565543 333334455444221 123444555566544 33344
Q ss_pred HHCCCCcccccccCCcHHHHHHHcCChhHHHHhh
Q psy2356 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332 (529)
Q Consensus 299 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~ 332 (529)
.+.|..++.... .+.+...++.|..+-+..++
T Consensus 167 ~~~G~~Pd~~ty--~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 167 VESEVVPEEPEL--AALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCCCCCHHHH--HHHHHHHhhCCCHHHHHHHH
Confidence 445555443211 12333445555555444443
No 119
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=36.20 E-value=90 Score=28.55 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCC--------------CCCCChHHHHHHHcCChhHHHHHHH
Q psy2356 10 RAARAGHLDKIIEHLKNNVDINTA--------------NANGLNALHLASKDGHLHVVTELLS 58 (529)
Q Consensus 10 ~A~~~g~~~~v~~ll~~~~~~~~~--------------~~~g~t~L~~A~~~g~~~iv~~Ll~ 58 (529)
..+..|+...|+..+..|-+++.. -..|.|.+|.|++..+.+++-.|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 345689999999999987776543 2359999999999999999999997
No 120
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=33.80 E-value=35 Score=32.85 Aligned_cols=139 Identities=9% Similarity=0.105 Sum_probs=78.0
Q ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcC-C-------------hhHHHHHHHCCCCCCCCC
Q psy2356 6 TSFLRAARAGHLDKIIEHLK----NNVDINTANANGLNALHLASKDG-H-------------LHVVTELLSRGANVDSAT 67 (529)
Q Consensus 6 t~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~g-~-------------~~iv~~Ll~~ga~~~~~~ 67 (529)
..|..+|+.|+++.+..+++ .|+.++.. -.+.|..|+..+ . .++++.+.+.|..++...
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34677788999977776663 57665432 345566665432 1 346666677777765422
Q ss_pred CCCCchHHHHhhcCccccccccccccCCCCCHHHHHHHcCcHHHHHHHhhc----CCC-CCCCC-cHHHHHHHcCcHHHH
Q psy2356 68 KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTR-GKDGF-TPLAVAMQQGHDKVV 141 (529)
Q Consensus 68 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~----~~~-~~~~~-~~l~~A~~~~~~~~v 141 (529)
. .+.+...++.|..+-...+++. |.. +.... +.+...++.|+.+-+
T Consensus 108 y----------------------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 108 F----------------------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp H----------------------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred H----------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 1 1335556777777666555543 322 22222 344555677776555
Q ss_pred HHHHh----cCCCCC--CCcCHHHHHhhCCChHHHHHHHh
Q psy2356 142 AVLLE----NDTRGK--VRLPALHIAAKKDDTKAAKLLLE 175 (529)
Q Consensus 142 ~~Ll~----~~~~~~--~~~~~l~~a~~~~~~~~~~~ll~ 175 (529)
..+++ .+..+. ...+.+...++.|..+-+..+++
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 54443 333222 12235666778888876666654
Done!