RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2356
(529 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 314 bits (806), Expect = e-102
Identities = 161/526 (30%), Positives = 245/526 (46%), Gaps = 122/526 (23%)
Query: 28 VDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVW 87
+ +GL LH+AS GHL +V LL RGA+ + + K T LH+A+
Sbjct: 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA--------- 55
Query: 88 LGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAV 143
+ GH +V LL+N + + KD TPL A + GH +V +
Sbjct: 56 -----------------RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98
Query: 144 LLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYL 199
LLEN + LHIAA++ + LLE
Sbjct: 99 LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA--------------------- 137
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
+ +K GFTPLH+A+ YG VA +LL++ A N + K+GLTPLHVA +
Sbjct: 138 -----SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
+IV LL +P P G TPLH+AA+ NQ ++ R LL+ G +A + +G T L +A
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252
Query: 320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD- 378
+EGH + L+ + +
Sbjct: 253 -----------------------AQEGHAE------------------MVALLLSKQANG 271
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLL 424
+K+GLTPLHL AQE V VA++L+K+ VD T+ + + LL
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 425 EYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYIS 484
++ A NA++ G++PLH +A +GH D+ +LL++GA + + +G T L+IA++LGYIS
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391
Query: 485 VEESLKGVTE--TLIIAKGDGEKHKVVAPEIMQETFMSDSEDENGE 528
V + LK VT+ + ++ +KH++ PE + E + SEDE E
Sbjct: 392 VTDVLKVVTDETSFVLVS---DKHRMSFPETVDE-ILDVSEDEGEE 433
Score = 266 bits (682), Expect = 6e-84
Identities = 118/455 (25%), Positives = 185/455 (40%), Gaps = 85/455 (18%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
+ T AARAGH + + ++L +N +N + LH A++ GH ++V LL A
Sbjct: 46 KVETPLHMAARAGHTE-VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
N + AT G+T LHIA+ ++GH + V LLE
Sbjct: 105 NPNLATTAGHTPLHIAA--------------------------REGHVETVLALLEKEAS 138
Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
K GFTPL VA + G +V +LLE + GK L LH+A ++ KLL
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
L +P + +G+TPLHIA+ VA LL
Sbjct: 199 LPRGG--------------------------SPHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD 293
N + G+TPLH+A+ G +V LL AN ++ G TPLHL A+
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292
Query: 294 IIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTAL 350
+ +L+++G VDA R G+T L +A G I + + L A + + + G++ L
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVNAKTKLGYSPL 348
Query: 351 SIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNA 409
A + G+ + L+ E +G TPL + + + V ++L
Sbjct: 349 HQAAQQGH-------TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401
Query: 410 QVDTPTKMD--------IATTLLEYGAKPNAESVA 436
+ D +L+ E ++
Sbjct: 402 ETSFVLVSDKHRMSFPETVDEILDVSEDEGEELIS 436
Score = 104 bits (261), Expect = 4e-24
Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 34/193 (17%)
Query: 301 NGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLG 357
G G T L +A +G++ + ++L GA + T L +A + G
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA----SPNVSNVKVETPLHMAARAG 58
Query: 358 YISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK 416
+ V + L+ K K K+ TPLH A+ + +L
Sbjct: 59 H-------TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL------------- 98
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSI 476
LLE A PN + AG TPLH++A EGH + LLE A + K+G T L +
Sbjct: 99 ------LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 152
Query: 477 AQKLGYISVEESL 489
A K G + V E L
Sbjct: 153 AAKYGKVRVAELL 165
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 254 bits (652), Expect = 2e-80
Identities = 64/464 (13%), Positives = 120/464 (25%), Gaps = 121/464 (26%)
Query: 27 NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPV 86
++ ++ + +H+A++ G V L+ G + + G TALH+A
Sbjct: 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC-------- 61
Query: 87 WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--DTRGKDGFTPLAVAMQQGHDKVVAVL 144
+ G L G P+ +A+ +V L
Sbjct: 62 ------------------KFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVAL 103
Query: 145 LEN-DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNE 203
+E RG++ + + NE
Sbjct: 104 VEGAKERGQM---PESLLNEC--------------------------------DEREVNE 128
Query: 204 HNPDVTSKSGFTPLHIASHYGNEG--VANILLDKRADVNFSAKSGLTPLHVASFMGCMNI 261
V G T LH G E + IL+ A K+ TPL A
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREA 188
Query: 262 VIYLL-----QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
+ ++ ++ D +G + LH A N D+ + G V+ E L
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL 248
Query: 317 SIAQKLGYISVEESL--GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLII 374
++ + + + + L G T L
Sbjct: 249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL------------------------ 284
Query: 375 AKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES 434
L + A + V +LL + +
Sbjct: 285 -----PDRVVWLDFVPAAADPSKQEVLQLLQEK-------------------LDEVVRSL 320
Query: 435 VAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQ 478
G + + M L A V ++ + ++++
Sbjct: 321 NTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364
Score = 202 bits (517), Expect = 2e-60
Identities = 56/378 (14%), Positives = 115/378 (30%), Gaps = 64/378 (16%)
Query: 123 KDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSC 178
+ + VA ++G V L+E + + ALH+A K AK L
Sbjct: 18 DENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS--- 74
Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
+ G P+H+A + L++ +
Sbjct: 75 -------------------------VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE 109
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQ--TDIIR 296
G P + + + + + +G+T LH ++I+
Sbjct: 110 R------GQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIK 157
Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESL----GAAERSQLKKRGREGHTALSI 352
IL++ GA A+ + T L A + + + + +L ++G++ L
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217
Query: 353 AQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQV 411
A + + + V + D + PL+L + V + + LL+
Sbjct: 218 AILINW-------EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270
Query: 412 DTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471
I G + V + +A ++ +L E +V + G
Sbjct: 271 L------IQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA 324
Query: 472 TALSIAQKLGYISVEESL 489
+K +V+
Sbjct: 325 GGAVKRKKKAAPAVKRMK 342
Score = 167 bits (426), Expect = 2e-47
Identities = 48/284 (16%), Positives = 95/284 (33%), Gaps = 42/284 (14%)
Query: 227 GVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
G ++ + + S + +HVA+ G + V L++ +P I G T LHLA
Sbjct: 1 GPGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60
Query: 287 ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREG 346
+ D + L G G + +A + +L ++ G
Sbjct: 61 CKFGCVDTAKYLASVGE--VHSLWHGQKPIHLAVMANKTDLVVAL-------VEGAKERG 111
Query: 347 HTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQE--DRVGVAELL 404
S+ + V E V KH G T LH C + + + ++L
Sbjct: 112 QMPESLLNECDEREVNEIGSHV------------KHCKGQTALHWCVGLGPEYLEMIKIL 159
Query: 405 LKNNAQVDTPTK--------------MDIATTLLEYG-----AKPNAESVAGFTPLHLSA 445
++ A K + +++ + + + G + LH +
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI 219
Query: 446 SEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
D++ +E G DV+ E L ++ + + + + L
Sbjct: 220 LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 243 bits (624), Expect = 2e-76
Identities = 82/338 (24%), Positives = 128/338 (37%), Gaps = 63/338 (18%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
L AAR+G+ +K++ L NV+ + ++ LHLA+ + +V LL GA+
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 63 VDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQGH 108
V + K G LH A E L+ K G FTPL A +
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLL-------KHGACVNAMDLWQFTPLHEAASKNR 136
Query: 109 DKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKK 164
+V ++LL + G + + +A + + + + L A +
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS-------LLQAAREA 189
Query: 165 DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIAS--- 221
D K K L E +S T LH A
Sbjct: 190 DLAKVKKTLA---------------------------LEIINFKQPQSHETALHCAVASL 222
Query: 222 HYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGET 281
H + VA +LL K A+VN K +TPLHVA+ +++ L ++ A + G+T
Sbjct: 223 HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT 282
Query: 282 PLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
LH AA A R+LL G+ + +G TA +
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320
Score = 210 bits (536), Expect = 2e-63
Identities = 87/374 (23%), Positives = 136/374 (36%), Gaps = 72/374 (19%)
Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVD 181
G+ G + L +A +L + + L A ++ K
Sbjct: 1 GEFGKSALDLADPSAK-----AVLTGEYKKD---ELLEAARSGNEEKLMA---------- 42
Query: 182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNF 241
L N + TPLH+A+ Y + +LL ADV+
Sbjct: 43 ----------------LLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 242 SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN 301
K GL PLH A G + LL++ A + + TPLH AA N+ ++ +LL +
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 302 GAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
GA G +A+ +A +GH+ L A++ V
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYE------------FKGHSLLQAAREADLAKV 194
Query: 362 EESLKGVTETLIIAKGDGEKH-KNGLTPLHLCAQE---DRVGVAELLLKNNAQVDTPTK- 416
++ + + K ++ T LH R VAELLL+ A V+ K
Sbjct: 195 KK--------TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246
Query: 417 -------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV 463
D+ L ++GAK NA G T LH +A GH +LL +G+D
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306
Query: 464 SHAAKEGHTALSIA 477
S + +G TA +
Sbjct: 307 SIISLQGFTAAQMG 320
Score = 192 bits (490), Expect = 1e-56
Identities = 83/448 (18%), Positives = 142/448 (31%), Gaps = 127/448 (28%)
Query: 55 ELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAV 114
+L A + L A A +K++A+
Sbjct: 9 DLADPSAKAVLTGEYKKDELLEA-------------------------ARSGNEEKLMAL 43
Query: 115 LLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
L TPL H+AA + +
Sbjct: 44 LTPLNVNCHASDGRKSTPL-----------------------------HLAAGYNRVRIV 74
Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
+LLL+ + K G PLH A YG+ V
Sbjct: 75 QLLLQHGA--------------------------DVHAKDKGGLVPLHNACSYGHYEVTE 108
Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
+LL A VN TPLH A+ + + LL + A+P + G++ + +A
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168
Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE--SLGAAERSQLKKRGREGHT 348
+ + +GH+ L A++ V++ +L K+ + T
Sbjct: 169 LRERLTYEF-----------KGHSLLQAAREADLAKVKKTLALEIIN----FKQPQSHET 213
Query: 349 ALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKN 407
AL A + ++ V E L+ + EK+K+ +TPLH+ A+ V E+L K+
Sbjct: 214 ALHCAVASLHPKRKQ----VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269
Query: 408 NAQVDTPTK--------------MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
A+++ + LL YG+ P+ S+ GFT + +
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEAV 324
Query: 454 AMLLEHGADVSHAAKEGHTALSIAQKLG 481
+L + + L A K G
Sbjct: 325 QQILSESTPMR--TSDVDYRLLEASKAG 350
Score = 166 bits (422), Expect = 6e-47
Identities = 58/300 (19%), Positives = 100/300 (33%), Gaps = 51/300 (17%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
G A GH + + E L K+ +N + LH A+ + V + LLS GA
Sbjct: 90 GGLVPLHNACSYGHYE-VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE---- 117
+ G +A+ +A E + G + L A ++ V L
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEF----KGHSLLQAA-READLAKVKKTLALEII 203
Query: 118 NDTRGKDGFTPLAVAMQQGHDK---VVAVLLEN----DTRGKVRLPALHIAAKKDDTKAA 170
N + + T L A+ H K V +LL + + K + LH+AA++
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM 263
Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
++L K+ + G T LH A+ G+
Sbjct: 264 EVL--------------------------HKHGAKMNALDSLGQTALHRAALAGHLQTCR 297
Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN 290
+LL +D + + G T + + V +L + L A++A
Sbjct: 298 LLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD--VDYRLLEASKAG 350
Score = 108 bits (272), Expect = 4e-26
Identities = 51/265 (19%), Positives = 77/265 (29%), Gaps = 75/265 (28%)
Query: 243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA-NQTDIIRILLRN 301
+ G + L L A + + L AAR+ N+ ++ +L
Sbjct: 1 GEFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL 47
Query: 302 GAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISV 361
A T L +A
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNR------------------------------------- 70
Query: 362 EESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA 420
+ + L+ D K K GL PLH V ELLLK+
Sbjct: 71 ----VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH------------- 113
Query: 421 TTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKL 480
GA NA + FTPLH +AS+ ++ ++LL HGAD + G +A+ +A
Sbjct: 114 ------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 481 GYISVEESLKGVTETLIIAKGDGEK 505
L A+
Sbjct: 168 ELRERLTYEFKGHSLLQAAREADLA 192
Score = 106 bits (267), Expect = 2e-25
Identities = 44/232 (18%), Positives = 70/232 (30%), Gaps = 70/232 (30%)
Query: 5 HTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLH---VVTELLSRGA 61
S L+AAR L K+ + L + + ALH A H V LL +GA
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA 238
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
NV+ K T LH+A+ ++ H+ V+ VL ++
Sbjct: 239 NVNEKNKDFMTPLHVAA--------------------------ERAHNDVMEVLHKHGAK 272
Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
+ G T L A GH + +LL A + + A + +
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQI 327
Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGN 225
L + + + L AS G+
Sbjct: 328 LS----------------------------ESTPMRTSDVDYRLLEASKAGD 351
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 200 bits (510), Expect = 1e-60
Identities = 64/310 (20%), Positives = 98/310 (31%), Gaps = 42/310 (13%)
Query: 30 INTANANGLNALHLASKDGHLHVVTELLSRGAN---VDSATKKGNTALHIASLGEFLVPV 86
+G ALHLA H + LL A +D G TALH+A+
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA-------- 53
Query: 87 WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVA 142
G V L + G T L +A +
Sbjct: 54 ------------------ILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCAC 95
Query: 143 VLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKN 202
VLL+ ++ +D T PA+V S
Sbjct: 96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHA--------PAAVDSQPNPENEEEPRDEDW 147
Query: 203 EHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK-SGLTPLHVASFMGCMNI 261
+ + G TPLH+A + + + +L D AD+N G TPLH+A ++
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 262 VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
+ LL+ A+P G TPL A + R+L +GA + + S +
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS 267
Query: 322 LGYISVEESL 331
+
Sbjct: 268 DSDSDNRDEG 277
Score = 181 bits (461), Expect = 2e-53
Identities = 56/302 (18%), Positives = 96/302 (31%), Gaps = 47/302 (15%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRAD---VNFSAKSGLTPLHVASFMGCMNIVIYL 265
++ G T LH+A + +E + LL A ++ G T LH+A+ +G + V L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
A + G T LHLA R +LL+ A + + S
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD------ 118
Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKN 384
H ++ S + ++ +
Sbjct: 119 ---------------CTPDTSHAPAAVD------SQPNPENEEEPRDEDWRLQLEAENYD 157
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK---------------MDIATTLLEYGAK 429
G TPLH+ + LL A ++ P + LL+ GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYI-SVEES 488
P A G TPL + + ++ +L HGA + + S + + +E
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277
Query: 489 LK 490
+
Sbjct: 278 DE 279
Score = 171 bits (437), Expect = 8e-50
Identities = 60/325 (18%), Positives = 91/325 (28%), Gaps = 82/325 (25%)
Query: 3 EGHTSFLRAARAGHLDKI---IEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSR 59
+G T+ A H + + + ++ N G ALHLA+ G V +L +
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 60 GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN- 118
GA V A + G+TALH+A + VLL+
Sbjct: 68 GAGVLVAERGGHTALHLAC--------------------------RVRAHTCACVLLQPR 101
Query: 119 ----------------DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-----DTRGKVRLPA 157
D P AV Q + E+ +
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 158 LHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK---SGF 214
LH+A D + +LL + D+ G
Sbjct: 162 LHVAVIHKDAEMVRLLRD----------------------------AGADLNKPEPTCGR 193
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPLH+A V +LL AD G TPL A + L + A
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253
Query: 275 PTVRGETPLHLAARANQTDIIRILL 299
+P + + +D
Sbjct: 254 DGGDKLSPCSSSGSDSDSDNRDEGD 278
Score = 148 bits (377), Expect = 3e-41
Identities = 52/278 (18%), Positives = 76/278 (27%), Gaps = 51/278 (18%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
G T+ AA G +E L + A G ALHLA + LL
Sbjct: 44 LGQTALHLAAILGEAS-TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP 102
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
+ D P AV Q + E+
Sbjct: 103 SHPRDASDTYLTQSQ-------------DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKKDDTKAAK 171
+ DG TPL VA+ ++V +L + N LH+A + +
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 172 LLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI 231
LLL+ A +P G TPL A N +A +
Sbjct: 210 LLLK----------------AGA----------DPTARMYGGRTPLGSALLRPNPILARL 243
Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
L A L+P + + + D
Sbjct: 244 LRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 77.6 bits (192), Expect = 5e-16
Identities = 23/144 (15%), Positives = 38/144 (26%), Gaps = 25/144 (17%)
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNA---QVDTPTK--------------MDIAT 421
G ++G T LHL + LL +A +D
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 422 TLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLG 481
L GA G T LHL+ + +LL+ A + + S
Sbjct: 63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT-- 120
Query: 482 YISVEESLKGVTETLIIAKGDGEK 505
+ ++ + E
Sbjct: 121 ------PDTSHAPAAVDSQPNPEN 138
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 198 bits (507), Expect = 3e-60
Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 27/265 (10%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
S ++P+H A+ +G++ L+ + VN ++PLH A G ++ V LL++ A
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ T TPL A + D + +LL++GA V + + + + A + G++ SL
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 120
Query: 332 ---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTP 388
G + + T L +A + + + L+ + D + K +P
Sbjct: 121 IAYGG----NIDHKISHLGTPLYLACENQQ-------RACVKKLLESGADVNQGKGQDSP 169
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTKM------------DIATTLLEYGAKPNAESVA 436
LH A+ +A LL+ A +A LE P+ +
Sbjct: 170 LHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLC 229
Query: 437 GFTPLHLSASEGHADMSAMLLEHGA 461
+ H ++ ++L
Sbjct: 230 RLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 190 bits (486), Expect = 3e-57
Identities = 52/306 (16%), Positives = 93/306 (30%), Gaps = 68/306 (22%)
Query: 36 NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
+ + +H A+ GH + L+S+G V+ T + LH A
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC----------------- 44
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN---- 147
GH V +LL++ + D TPL A G V +LL++
Sbjct: 45 ---------LGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 95
Query: 148 --DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHN 205
++ +H AA++ + L+ N
Sbjct: 96 QPESDLA---SPIHEAARRGHVECVNSLIAYGG--------------------------N 126
Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
D TPL++A LL+ ADVN K +PLH + + L
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLL 185
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
+ A+ G+ P+ L + + ++ L +
Sbjct: 186 MDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHH 243
Query: 326 SVEESL 331
+ + +
Sbjct: 244 KITKLV 249
Score = 187 bits (477), Expect = 6e-56
Identities = 59/303 (19%), Positives = 97/303 (32%), Gaps = 66/303 (21%)
Query: 11 AARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKK 69
AA GH + +L +N A+ ++ LH A GHL V LL GA V+ T
Sbjct: 10 AAIHGHQL-SLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 68
Query: 70 GNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEND---TRGKDGF 126
+T L A G V +LL++ D
Sbjct: 69 WHTPLFNAC--------------------------VSGSWDCVNLLLQHGASVQPESDLA 102
Query: 127 TPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDP 182
+P+ A ++GH + V L+ D + L++A + K LLE
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE------- 155
Query: 183 ASVLSSTTGNAATGGYLIKNEHNPDV-TSKSGFTPLHIASHYGNEGVANILLDKRADVNF 241
DV K +PLH + +E +A +L+D AD
Sbjct: 156 ---------------------SGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQA 194
Query: 242 SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN 301
G P+ + + L+ + P + + I +++L
Sbjct: 195 KNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252
Query: 302 GAQ 304
+
Sbjct: 253 DLK 255
Score = 126 bits (320), Expect = 2e-33
Identities = 43/216 (19%), Positives = 71/216 (32%), Gaps = 34/216 (15%)
Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GA 333
+ +P+H AA +R L+ G V+ + + L A G++S + L GA
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 334 AERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCA 393
Q+ + HT L A G L+ + + +P+H A
Sbjct: 61 ----QVNGVTADWHTPLFNACVSGS-------WDCVNLLLQHGASVQPESDLASPIHEAA 109
Query: 394 QEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
+ V L+ YG + + TPL+L+
Sbjct: 110 RRGHVECVNS-------------------LIAYGGNIDHKISHLGTPLYLACENQQRACV 150
Query: 454 AMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
LLE GADV + K + L + + L
Sbjct: 151 KKLLESGADV-NQGKGQDSPLHAVARTASEELACLL 185
Score = 93.3 bits (233), Expect = 2e-21
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 8/123 (6%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
T A ++ L ++ D+N + LH ++ + L+ GA
Sbjct: 133 HLGTPLYLACENQQRA-CVKKLLESGADVNQGK-GQDSPLHAVARTASEELACLLMDFGA 190
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLG-----DFKQGDGFTPLAVAMQQGHDKVVAVLL 116
+ + +G + + L ++L Q Q H K+ ++L
Sbjct: 191 DTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Query: 117 END 119
D
Sbjct: 251 PED 253
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 200 bits (510), Expect = 3e-60
Identities = 65/310 (20%), Positives = 115/310 (37%), Gaps = 58/310 (18%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
+ FL A +G ++++ L+ DIN AN +GL ALH A D ++ +V L+ GAN
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
++ +G LH A+ G+ + L+
Sbjct: 99 INQPDNEGWIPLHAAA--------------------------SCGYLDIAEYLISQGAHV 132
Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSC 178
+G TPL +A ++ ++++ + R V + A ++ + A+
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVN---RQGVDIEAARKEEERIMLRDARQ------ 183
Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
+L N +KSG T LH+A+ G V +L+ R D
Sbjct: 184 -------------------WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
VN G TPLH A+ G L++N + + G+T +A + +
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284
Query: 299 LRNGAQVDAR 308
+ +
Sbjct: 285 KKQNLLHSEK 294
Score = 179 bits (456), Expect = 2e-52
Identities = 71/292 (24%), Positives = 117/292 (40%), Gaps = 37/292 (12%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
+ V G A G+ LL++ AD+N++ GLT LH A
Sbjct: 26 PPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD 84
Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALS 317
+++V +L++N AN + P G PLH AA DI L+ GA V A EG T L
Sbjct: 85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144
Query: 318 IAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG 377
IA++ + ++ + ++G + A +++ + L +
Sbjct: 145 IAEEEAMEELLQNE-------VNRQGVDIEAARKEEERIMLRDARQWL--------NSGH 189
Query: 378 --DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV 435
D K+G T LH+ A + V +LL++ N +
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-------------------RYDVNIKDY 230
Query: 436 AGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEE 487
G+TPLH +A G + +L+E+ D+ K G TA +A + +EE
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282
Score = 160 bits (407), Expect = 2e-45
Identities = 60/382 (15%), Positives = 114/382 (29%), Gaps = 98/382 (25%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN--DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGK 152
+ G + + + T+ K ++
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF---------------------DDGA--- 42
Query: 153 VRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKS 212
A DT+ L++ + + +
Sbjct: 43 ----VFLAACSSGDTEEVL--------------------------RLLERGADINYANVD 72
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
G T LH A N + L++ A++N G PLH A+ G ++I YL+ A+
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 273 DIPTVRGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESL 331
G+TPL +A ++++ + R G + A +++ + L
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV-------DIEAARKEEERIMLRDARQWL 185
Query: 332 ---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLT 387
+ + G TAL +A GY V + LI A+ D K +G T
Sbjct: 186 NSGHI----NDVRHAKSGGTALHVAAAKGY-------TEVLKLLIQARYDVNIKDYDGWT 234
Query: 388 PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE 447
PLH A + +L++N A + G T ++ +
Sbjct: 235 PLHAAAHWGKEEACRILVEN-------------------LCDMEAVNKVGQTAFDVADED 275
Query: 448 GHADMSAMLLEHGADVSHAAKE 469
+ + + S ++
Sbjct: 276 ILGYLEELQKKQNLLHSEKREK 297
Score = 144 bits (366), Expect = 2e-39
Identities = 49/271 (18%), Positives = 94/271 (34%), Gaps = 31/271 (11%)
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ + + ++G + + + G A + T+ + L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQK 355
L GA ++ +G TAL A + + + L GA + + EG L A
Sbjct: 60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA----NINQPDNEGWIPLHAAAS 115
Query: 356 LGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLL-KNNAQVDT 413
GY + E LI G + G TPL + +E + + + + ++
Sbjct: 116 CGY-------LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168
Query: 414 PTKM-------DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA 466
K D L + +G T LH++A++G+ ++ +L++ DV+
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228
Query: 467 AKEGHTALSIAQKLGYISVEESLKGVTETLI 497
+G T L A G + L+
Sbjct: 229 DYDGWTPLHAAAHWGK-------EEACRILV 252
Score = 45.6 bits (109), Expect = 2e-05
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
G T AA G + L +N D+ N G A +A +D ++ +
Sbjct: 232 GWTPLHAAAHWGKEE-ACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Query: 63 VDSATKKGN 71
+K +
Sbjct: 291 HSEKREKKS 299
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 197 bits (504), Expect = 2e-58
Identities = 65/471 (13%), Positives = 120/471 (25%), Gaps = 146/471 (30%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
S L A+ G++ N L +G+ + +
Sbjct: 37 SQHSLLEASYDGYIK---------RQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIP 87
Query: 64 DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE---NDT 120
+ LH + G + + N
Sbjct: 88 TEPEPESPIKLHTEA---------------------------AGSYAITEPITRESVNII 120
Query: 121 RGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTV 180
+ T LH A + ++ L+
Sbjct: 121 DPRHNRTV-----------------------------LHWIASNSSAEKSEDLIVHEAK- 150
Query: 181 DPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN 240
I + + TPL +A + L+ AD
Sbjct: 151 -----------------ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT 193
Query: 241 FSAKSGLTPLHVASFMGCMNIVIYLLQND---ANPDIPTVRGETPLHLAARANQTDIIRI 297
KS + LH A+ +++Y+L + + + G T L + A D +
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253
Query: 298 ---LLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ 354
L+ GA+VD + +G TAL A
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKY--------------------------KGRTALHYAA 287
Query: 355 KLGYISVEESLKGVTETLIIAKGD--GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD 412
++ + + L+ KG ++ ++G TP+ L AQE R+ V L++
Sbjct: 288 QVSN-------MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ----- 335
Query: 413 TPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV 463
GA A T L+ + H ++ + +
Sbjct: 336 --------------GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 188 bits (480), Expect = 4e-55
Identities = 60/335 (17%), Positives = 110/335 (32%), Gaps = 52/335 (15%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNN-VDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
+ G+ + + N LH + G + +
Sbjct: 60 YSLYPNPQGYGNGNDF-LGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESV 117
Query: 62 NVDSATKKGNTALHIASLG------EFLVPVWLGDF---------KQGDGFTPLAVAMQQ 106
N+ + T LH + E L+ + D TPL +A+
Sbjct: 118 NII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA 176
Query: 107 GHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG-------KVRL 155
++VA L++ K + L A ++ +L + + +
Sbjct: 177 RRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236
Query: 156 PALHIAAK---KDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKS 212
AL I A +D +AKLL+E VD D
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVD------------------YDGAARKDSEKYK 278
Query: 213 GFTPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
G T LH A+ N + L+ ++ ++ + + G TP+ +A+ G + +V+YL+Q A+
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
+ T LA N +I+ I R + +
Sbjct: 339 VEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 184 bits (469), Expect = 1e-53
Identities = 70/414 (16%), Positives = 122/414 (29%), Gaps = 103/414 (24%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLL-------EN 147
L A G+ K L++ P G+D + E
Sbjct: 36 SSQHSLLEASYDGYIKRQRNELQHY-----SLYPNPQGYGNGNDFLGDFNHTNLQIPTEP 90
Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
+ + LH A + + + +
Sbjct: 91 EPESPI---KLHTEAA-GSYAITEPITR----------------------------ESVN 118
Query: 208 V-TSKSGFTPLHIASHYGNEGVANILL--------DKRADVNFSAKSGLTPLHVASFMGC 258
+ + T LH + + + L+ ADVN TPL +A
Sbjct: 119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN---GAQVDARAREGHTA 315
+V YL++ A+P I + LH AA ++ +L + ++ R G TA
Sbjct: 179 RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238
Query: 316 LSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIA 375
L I ++ A+ L + KG A
Sbjct: 239 LMIVAHNEG----------------------RDQVASAKLL--VE-----KGAKVDYDGA 269
Query: 376 KGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESV 435
+ G T LH AQ + + + L+ G+ + +
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK------------------GSNKDKQDE 311
Query: 436 AGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
G TP+ L+A EG ++ L++ GA V HTA +AQ + ++ +
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 123 bits (311), Expect = 3e-31
Identities = 48/300 (16%), Positives = 69/300 (23%), Gaps = 69/300 (23%)
Query: 201 KNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMN 260
+ + S L AS+ G L L P G
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQH---------YSLYPNPQGYGNGNDF 75
Query: 261 IVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQ 320
+ + N P P LH A A I + R + R T L
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID-PRHNRTVLHWIA 133
Query: 321 KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE 380
E L E + G V
Sbjct: 134 SNSSAEKSEDLIVHEAKECIAAG---------------ADVNA----------------- 161
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
+ TPL L R + L+K GA P + + +
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKA-------------------GADPTIYNKSERSA 202
Query: 441 LHLSASEGHADMSAMLLEH---GADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
LH +A+ M +L D+ + G TAL I + L+
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA----SAKLLV 258
Score = 69.6 bits (171), Expect = 5e-13
Identities = 20/156 (12%), Positives = 32/156 (20%), Gaps = 36/156 (23%)
Query: 346 GHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLL 405
+L A GYI + + E L P + +
Sbjct: 37 SQHSLLEASYDGYIKRQRN---------------ELQHYSLYPNPQGYGNGNDFLGDFNH 81
Query: 406 KNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
N P LH + G ++ + ++
Sbjct: 82 TN-------------------LQIPTEPEPESPIKLHT-EAAGSYAITEPITRESVNII- 120
Query: 466 AAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKG 501
+ T L E L IA G
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 192 bits (490), Expect = 4e-58
Identities = 63/309 (20%), Positives = 114/309 (36%), Gaps = 84/309 (27%)
Query: 27 NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPV 86
+++ + N + LH A++ GH+ + L+ GAN+D+ ++ T L A+
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA-------- 52
Query: 87 WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVA 142
+ H + V L++ D + +G T L
Sbjct: 53 ------------------ENNHLEAVKYLIKAGALVDPKDAEGSTCL------------- 81
Query: 143 VLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKN 202
H+AAKK + + LL
Sbjct: 82 ----------------HLAAKKGHYEVVQYLLS-------------------------NG 100
Query: 203 EHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIV 262
+ + + G+TP+ A+ Y + + +LL K +D+N LH A+F GC++I
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160
Query: 263 IYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKL 322
LL + + G++PLH+AAR N+ D + + L + V + +EG T L A
Sbjct: 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220
Query: 323 GYISVEESL 331
+ +
Sbjct: 221 SQVWSALQM 229
Score = 170 bits (434), Expect = 6e-50
Identities = 60/287 (20%), Positives = 104/287 (36%), Gaps = 62/287 (21%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
N + ++ +PLH A+ G+ + ++L+ A+++ ++ TPL A+ + V Y
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ-VDARAREGHTALSIAQKLG 323
L++ A D G T LHLAA+ ++++ LL NG V+ + G T + A
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA---- 118
Query: 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKH 382
H + + L+ D +
Sbjct: 119 -------------------TEYKH------------------VDLVKLLLSKGSDINIRD 141
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
LH A V +AE+LL +A ++ G +PLH
Sbjct: 142 NEENICLHWAAFSGCVDIAEILL-------------------AAKCDLHAVNIHGDSPLH 182
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
++A E D + L +DV+ KEG T L A + +
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229
Score = 161 bits (411), Expect = 1e-46
Identities = 65/279 (23%), Positives = 105/279 (37%), Gaps = 63/279 (22%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
+ AA AGH+D I L + +I+T + + L A+++ HL V L+ GA
Sbjct: 10 NKRSPLHAAAEAGHVD-ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
VD +G+T LH+A+ ++GH +VV LL N
Sbjct: 69 LVDPKDAEGSTCLHLAA--------------------------KKGHYEVVQYLLSNGQM 102
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKL 172
+ + G+TP+ A + H +V +LL + R LH AA A++
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL 232
LL C + + G +PLHIA+ +
Sbjct: 163 LLAAKC--------------------------DLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 233 LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
L + +DV K G TPL AS + + + + +
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 188 bits (481), Expect = 4e-56
Identities = 58/316 (18%), Positives = 112/316 (35%), Gaps = 42/316 (13%)
Query: 160 IAAKKDDTKAAKLLLEVSCTVDPASVLSSTT------GNAATGGYLIKNEHNPDVTSKSG 213
+ + + L+ + G G + + + S
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRL-LSNPLMGDAVSD 59
Query: 214 FTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
++P+H A+ +G++ L+ + VN ++PLH A G ++ V LL++ A +
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL-- 331
T TPL A + D + +LL++GA V + + + A + G++ SL
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIA 178
Query: 332 -GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLH 390
G + + T L +A + + + L+ + D + K +PLH
Sbjct: 179 YGG----NIDHKISHLGTPLYLACENQQ-------RACVKKLLESGADVNQGKGQDSPLH 227
Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA 450
+ +A L L+++GA A++ G P+ L E
Sbjct: 228 AVVRTASEELACL-------------------LMDFGADTQAKNAEGKRPVELVPPESPL 268
Query: 451 DMSAMLLEHGADVSHA 466
L GA +
Sbjct: 269 AQ-LFLEREGASLPKP 283
Score = 186 bits (476), Expect = 2e-55
Identities = 65/378 (17%), Positives = 107/378 (28%), Gaps = 99/378 (26%)
Query: 43 LASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAV 102
+ S H H + L+ RG+++ S K DG P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGM---------------------DGSKPAGP 39
Query: 103 AMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPAL 158
G + L+ + ++P+ A GH + L+ + + L
Sbjct: 40 RDFPGIRLLSNPLMGDA---VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPL 96
Query: 159 HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLH 218
H A K+LL+ + + TPL
Sbjct: 97 HEACLGGHLSCVKILLKHGA--------------------------QVNGVTADWHTPLF 130
Query: 219 IASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR 278
A G+ N+LL A V +P+H A+ G + V L+ N D
Sbjct: 131 NACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH 189
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
TPL+LA Q ++ LL +GA V+ + + L
Sbjct: 190 LGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAV------------------- 229
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
R + + L+ D K+ G P+ L E
Sbjct: 230 ----VRTAS------------------EELACLLMDFGADTQAKNAEGKRPVELVPPESP 267
Query: 398 VGVAELLLKNNAQVDTPT 415
+ L + A + P
Sbjct: 268 L-AQLFLEREGASLPKPK 284
Score = 181 bits (461), Expect = 3e-53
Identities = 57/314 (18%), Positives = 96/314 (30%), Gaps = 74/314 (23%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
G G ++ + + + + +H A+ GH + L+S+G V
Sbjct: 33 GSKPAGPRDFPGIR--LLSN-----PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85
Query: 64 DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----D 119
+ T + LH A GH V +LL++ +
Sbjct: 86 NIITADHVSPLHEAC--------------------------LGGHLSCVKILLKHGAQVN 119
Query: 120 TRGKDGFTPLAVAMQQGHDKVVAVLLEN------DTRGKVRLPALHIAAKKDDTKAAKLL 173
D TPL A G V +LL++ ++ +H AA++ + L
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS---PIHEAARRGHVECVNSL 176
Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
+ N D TPL++A LL
Sbjct: 177 IAYGG--------------------------NIDHKISHLGTPLYLACENQQRACVKKLL 210
Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD 293
+ ADVN K +PLH + L+ A+ G+ P+ L +
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA 269
Query: 294 IIRILLRNGAQVDA 307
+ L R GA +
Sbjct: 270 QL-FLEREGASLPK 282
Score = 159 bits (406), Expect = 3e-45
Identities = 55/279 (19%), Positives = 91/279 (32%), Gaps = 46/279 (16%)
Query: 219 IASHYGNEGVANILLDKRADVN-----FSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
+ S + + ++ L+ + + + G P F G I LL N D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG-----IRLLSNPLMGD 55
Query: 274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL-- 331
V +P+H AA +R L+ G V+ + + L A G++S + L
Sbjct: 56 --AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113
Query: 332 -GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLH 390
GA Q+ + HT L A G L+ + + +P+H
Sbjct: 114 HGA----QVNGVTADWHTPLFNACVSGS-------WDCVNLLLQHGASVQPESDLASPIH 162
Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHA 450
A+ V L+ YG + + TPL+L+
Sbjct: 163 EAARRGHVECVNSLI-------------------AYGGNIDHKISHLGTPLYLACENQQR 203
Query: 451 DMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
LLE GADV + K + L + + L
Sbjct: 204 ACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241
Score = 73.7 bits (182), Expect = 1e-14
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
T A ++ L ++ D+N + LH + + L+ GA
Sbjct: 189 HLGTPLYLACENQQRA-CVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGA 246
Query: 62 NVDSATKKGNTALHIAS 78
+ + +G + +
Sbjct: 247 DTQAKNAEGKRPVELVP 263
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 186 bits (476), Expect = 2e-55
Identities = 48/333 (14%), Positives = 99/333 (29%), Gaps = 73/333 (21%)
Query: 9 LRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATK 68
L K ++ ++ D A+ +G +A + A D ++ +V LL+ GA +
Sbjct: 4 LSRINTWK-SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN--LL 60
Query: 69 KGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKD 124
+ LH A+ K+V +LL +
Sbjct: 61 ENEFPLHQAA--------------------------TLEDTKIVKILLFSGLDDSQFDDK 94
Query: 125 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLP-ALHIAAKKDDTKAAKLLLEVSCT 179
G T L A+ G+ + V + ++ GK + + A +D L
Sbjct: 95 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS---- 150
Query: 180 VDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV 239
E + +HI G+ + +LLD
Sbjct: 151 -----------------------EIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST 187
Query: 240 NFSAKSGLTP-LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
N + P + +A + ++ L + D N + + +I +++
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMI 240
Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ + + + + KL I +
Sbjct: 241 IEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKE 273
Score = 186 bits (474), Expect = 3e-55
Identities = 38/306 (12%), Positives = 83/306 (27%), Gaps = 64/306 (20%)
Query: 199 LIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
+ + G + + A N + LL+ A N PLH A+ +
Sbjct: 17 SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN--LLENEFPLHQAATLED 74
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
IV LL + + +G T L+ A + +++ ++ ++ + G
Sbjct: 75 TKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG------ 128
Query: 319 AQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD 378
T+ A L + +
Sbjct: 129 ---------------------------WKTSFYHAVMLND-------VSIVSYFLSEIPS 154
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK---------------MDIATTL 423
L+ +H+ + V + LLL +T +++ L
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214
Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYI 483
+Y + + A+++ M++E + + + KL I
Sbjct: 215 FKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267
Query: 484 SVEESL 489
+
Sbjct: 268 ISKNKE 273
Score = 151 bits (383), Expect = 5e-42
Identities = 48/322 (14%), Positives = 92/322 (28%), Gaps = 58/322 (18%)
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN---DTRGKDGFTPLAVAMQQGHDKVVAVLLE-----N 147
G + K + L + G + A+ + ++V LL N
Sbjct: 1 GMDLSRIN--TWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN 58
Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
+ LH AA +DTK K+LL +
Sbjct: 59 LLENEF---PLHQAATLEDTKIVKILLFSGL--------------------------DDS 89
Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL-TPLHVASFMGCMNIVIYLL 266
G T L+ A GN + + K + F K+G T + A + ++IV Y L
Sbjct: 90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHT-ALSIAQKLGYI 325
+ + +H+ + D++ +LL + + +A I
Sbjct: 150 SEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI 208
Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKN 384
+ + L K ++A L + + +I +
Sbjct: 209 EMLQ--------ALFKYDINIYSANLENVLLDD-------AEIAKMIIEKHVEYKSDSYT 253
Query: 385 GLTPLHLCAQEDRVGVAELLLK 406
+ + D + L+
Sbjct: 254 KDLDIVKNNKLDEIISKNKELR 275
Score = 119 bits (301), Expect = 1e-30
Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 42/250 (16%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
G+ + + + + + + V G + + A N ++ LL GA
Sbjct: 1 GMDLSRINT---WKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 306 DARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVE 362
+ E L A L + + L G + +G+TAL A G
Sbjct: 58 N--LLENEFPLHQAATLEDTKIVKILLFSGL----DDSQFDDKGNTALYYAVDSGN---- 107
Query: 363 ESLKGVTETLIIAKGD-GEKHKNGL-TPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA 420
+ + K G T + + V + L
Sbjct: 108 ---MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP----------- 153
Query: 421 TTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHT-ALSIAQK 479
+ + +H++ GH DM +LL++ + + +A
Sbjct: 154 ---------STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID 204
Query: 480 LGYISVEESL 489
I + ++L
Sbjct: 205 NKDIEMLQAL 214
Score = 102 bits (256), Expect = 2e-24
Identities = 25/258 (9%), Positives = 69/258 (26%), Gaps = 95/258 (36%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLN-ALHLASKDGHLHVVTELLSRG 60
+G+T+ A +G++ ++ K N + G + + A + +V+ LS
Sbjct: 94 KGNTALYYAVDSGNMQ-TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152
Query: 61 ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
+ + +HI + GH ++ +LL+
Sbjct: 153 PSTF-DLAILLSCIHITI--------------------------KNGHVDMMILLLDYMT 185
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
+T F P + +A D + + L
Sbjct: 186 STNTNNSLLFI----------------------------PDIKLAIDNKDIEMLQALF-- 215
Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
+++ ++ + + +A ++++K
Sbjct: 216 --------------------------KYDINIY-----SANLENVLLDDAEIAKMIIEKH 244
Query: 237 ADVNFSAKSGLTPLHVAS 254
+ + + + +
Sbjct: 245 VEYKSDSYTKDLDIVKNN 262
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 183 bits (468), Expect = 7e-55
Identities = 63/290 (21%), Positives = 102/290 (35%), Gaps = 67/290 (23%)
Query: 30 INTANANGLNALHLASKDGHLHVVTELLSR----GANVDSATKKGNTALHIASLGEFLVP 85
A+ +G LH+A G+L V L++ G +D T LH+A
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV------- 54
Query: 86 VWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVV 141
VV +L+ + G T +A + +
Sbjct: 55 -------------------ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCL 95
Query: 142 AVLLEN--------DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNA 193
LL++ + R L ALH+A + + +LLLE +D
Sbjct: 96 RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID------------ 143
Query: 194 ATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVA 253
+ KSG +PL A + + +LL A+VN SG + LH A
Sbjct: 144 ------AVD-------IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190
Query: 254 SFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
S G + +V L+++ A+ + +TPL +A DI+R A
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 160 bits (408), Expect = 3e-46
Identities = 61/289 (21%), Positives = 103/289 (35%), Gaps = 70/289 (24%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKR----ADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
+ G TPLHIA GN + L++ +++ TPLH+A ++V L+
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ----VDARAREGHTALSIAQKL 322
A+P G+T HLA +R LL + A ++AR +G TAL +A
Sbjct: 67 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA--- 123
Query: 323 GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEK- 381
+ + L+ D +
Sbjct: 124 --------------------VNTEC------------------QETVQLLLERGADIDAV 145
Query: 382 -HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
K+G +PL + + + + +LLL++ GA NA+ +G +
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQH-------------------GANVNAQMYSGSSA 186
Query: 441 LHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
LH ++ G + L+ GAD S T L +A+ I +
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235
Score = 158 bits (401), Expect = 4e-45
Identities = 57/287 (19%), Positives = 94/287 (32%), Gaps = 71/287 (24%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-----KNNVDINTANANGLNALHLASKDGHLHVVTELL 57
+G T A G+L + L + +++ N LHLA VV L+
Sbjct: 8 DGDTPLHIAVVQGNLP-AVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 58 SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE 117
+ GA+ + + G TA H+A + + LL+
Sbjct: 67 TAGASPMALDRHGQTAAHLAC--------------------------EHRSPTCLRALLD 100
Query: 118 N--------DTRGKDGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKK 164
+ + R DG T L VA+ + V +LLE + K L A +
Sbjct: 101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160
Query: 165 DDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYG 224
+ +LL +++ N + SG + LH AS G
Sbjct: 161 NSLSMVQLL--------------------------LQHGANVNAQMYSGSSALHSASGRG 194
Query: 225 NEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+ L+ AD + TPL VA ++I+ A+
Sbjct: 195 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 71.7 bits (177), Expect = 2e-14
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 15/110 (13%)
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
++G TPLH+ + + L+ + G + + + T
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVN---------------LFQQGGRELDIYNNLRQT 48
Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
PLHL+ + +L+ GA + G TA +A + + +L
Sbjct: 49 PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 177 bits (452), Expect = 1e-52
Identities = 59/289 (20%), Positives = 93/289 (32%), Gaps = 63/289 (21%)
Query: 30 INTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLG 89
+ + + A++ G EL+ G +V K+ T LH A+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAA----------- 50
Query: 90 DFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKD-GFTPLAVAMQQGHDKVVAVL 144
+V + D G D TPL A +QGH +V L
Sbjct: 51 ---------------INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95
Query: 145 LEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLI 200
++ +H+AA+ T YLI
Sbjct: 96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVA--------------------------YLI 129
Query: 201 KNEHNPDVTSKSGFTPLHIASHYGNEG-VANILLDKRADVNFSAKS-GLTPLHVASFMGC 258
+ D+ ++G TPL A++ + +LL VN K T LH A G
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
++ LL+ AN D ++GE+ L LA + +I L
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 167 bits (427), Expect = 7e-49
Identities = 66/306 (21%), Positives = 101/306 (33%), Gaps = 73/306 (23%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
+ + A+ YG L++ DV K +T LH A+ +++V Y
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 265 LLQNDANPDIPTV-RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
+ A D TPLH A R ++ L++ GA EG + + +A
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA---- 116
Query: 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG---DGE 380
+ GH SI L IAKG D
Sbjct: 117 -------------------AQFGH--TSIVAYL-----------------IAKGQDVD-M 137
Query: 381 KHKNGLTPLHLCAQE-DRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
+NG+TPL A V LLL N V+ K T
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYH------------------KNT 179
Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIA 499
LH + G+ + ++LLE GA+V +G +AL +A++ + L A
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN-------VWMINHLQEA 232
Query: 500 KGDGEK 505
+
Sbjct: 233 RQAKGY 238
Score = 154 bits (392), Expect = 7e-44
Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 63/281 (22%)
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
++ + A+ Q G + L+E
Sbjct: 1 HMTHIDDYSTWDIVKAT--------------------------QYGIYERCRELVEAGYD 34
Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKKDDTKAAKL 172
K+ T L A +V + + G + LH A ++
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV- 93
Query: 173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL 232
L+K +P + G + +H+A+ +G+ + L
Sbjct: 94 -------------------------QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128
Query: 233 LDKRADVNFSAKSGLTPLHVASFMG-CMNIVIYLLQNDANPDIPT-VRGETPLHLAARAN 290
+ K DV+ ++G+TPL A++ ++ LL + + ++ T LH A A
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188
Query: 291 QTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
T +I +LL GA VDA+ +G +AL +A++ + + L
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 146 bits (370), Expect = 9e-41
Identities = 52/262 (19%), Positives = 87/262 (33%), Gaps = 42/262 (16%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
+ A + + + L+E + K T
Sbjct: 12 DIVKATQYGIYERCRELVEAGY--------------------------DVRQPDKENVTL 45
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAK-SGLTPLHVASFMGCMNIVIYLLQNDANPDIP 275
LH A+ + + K A V+ TPLH A+ G +++V+ L++ A+P +
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 276 TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA-QKLGYISVEESL--- 331
G + +HLAA+ T I+ L+ G VD + G T L A + + L
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLH 390
S +TAL A G V L+ A + ++ G + L
Sbjct: 166 NV---SVNLGDKYHKNTALHWAVLAGN-------TTVISLLLEAGANVDAQNIKGESALD 215
Query: 391 LCAQEDRVGVAELLLKNNAQVD 412
L Q V + L +
Sbjct: 216 LAKQRKNVWMINHLQEARQAKG 237
Score = 134 bits (341), Expect = 1e-36
Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 86/277 (31%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANAN-GLNALHLASKDGHLHVVTELLSRG 60
E T AA +D ++++ ++ + LH A++ GHL +V +L+ G
Sbjct: 41 ENVTLLHWAAINNRID-LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99
Query: 61 ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
A+ +G + +H+A+ Q GH +VA L+
Sbjct: 100 ADPSLIDGEGCSCIHLAA--------------------------QFGHTSIVAYLIAKGQ 133
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
D ++G TPL A + H +LLL
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDP----------------------------TRLLLTF 165
Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
+ +V+ + ++++ T LH A GN V ++LL+
Sbjct: 166 NVSVN------------------LGDKYH-------KNTALHWAVLAGNTTVISLLLEAG 200
Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
A+V+ G + L +A + ++ +L +
Sbjct: 201 ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 178 bits (453), Expect = 4e-52
Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 57/314 (18%)
Query: 33 ANANGLNALHLASKDGHLHVVTELLSRGANVDSATKK-GNTALHIASLGEFLVPVWLGDF 91
A + L A ++ + +V +LL GANV+ ++ G T LH A
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV------------- 47
Query: 92 KQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
Q + +V +LL + R K+G TP +A G K++ + L
Sbjct: 48 -------------QMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94
Query: 148 ----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNE 203
+ A AA KA K L + V+ K +
Sbjct: 95 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR----------------KTK 138
Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFMGCMN-- 260
+ + K G T L A+ G+ V ILLD+ ADVN G L A +
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198
Query: 261 --IVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALS 317
I LL + A+ ++ RG+TPL LA +++ LL + +++ +G TAL
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258
Query: 318 IAQKLGYISVEESL 331
+A +L + E L
Sbjct: 259 LAVELKLKKIAELL 272
Score = 175 bits (447), Expect = 3e-51
Identities = 66/321 (20%), Positives = 113/321 (35%), Gaps = 63/321 (19%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKS---G 213
L A + +D + LLE +V + G
Sbjct: 8 LLIKAVQNEDVDLVQQLLE----------------------------GGANVNFQEEEGG 39
Query: 214 FTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPD 273
+TPLH A E + +LL AD K+G TP +A+ G + ++ L A+ +
Sbjct: 40 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99
Query: 274 IPTVRGETPLHLAARANQTDIIRILLRNGAQVDAR----------AREGHTALSIAQKLG 323
G T AA + ++ L + GA V+ R + G TAL A + G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159
Query: 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKH 382
++ V + L + + G AL A + ++ +T L+ D +
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSD---DSDVEAITHLLLDHGADVNVRG 216
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
+ G TPL L ++ +G+ + LL+ + N G T L
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQ------------------EHIEINDTDSDGKTALL 258
Query: 443 LSASEGHADMSAMLLEHGADV 463
L+ ++ +L + GA
Sbjct: 259 LAVELKLKKIAELLCKRGAST 279
Score = 174 bits (445), Expect = 5e-51
Identities = 69/331 (20%), Positives = 111/331 (33%), Gaps = 77/331 (23%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANAN-GLNALHLASKDGHLHVVTELLSRG 60
E + ++A + +D +++ L + ++N G LH A + +V LL G
Sbjct: 4 EDNHLLIKAVQNEDVD-LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 61 ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
A+ K G T +A+ G K++ + L
Sbjct: 63 ADPVLRKKNGATPFLLAA--------------------------IAGSVKLLKLFLSKGA 96
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLP----------ALHIAA 162
+ GFT A G K + L + + R K + AL AA
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 163 KKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH 222
+K + K+LL G A + + G L A
Sbjct: 157 EKGHVEVLKILL-------------DEMG-A-----------DVNACDNMGRNALIHALL 191
Query: 223 YGNEG----VANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL-QNDANPDIPTV 277
++ + ++LLD ADVN + G TPL +A + +V LL Q +
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDAR 308
G+T L LA I +L + GA D
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Score = 159 bits (405), Expect = 3e-45
Identities = 71/315 (22%), Positives = 112/315 (35%), Gaps = 62/315 (19%)
Query: 123 KDGFTPLAVAMQQGHDKVVAVLLE-----NDTRGKVRLPALHIAAKKDDTKAAKLLLEVS 177
+ L A+Q +V LLE N + LH A + +
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE------ 56
Query: 178 CTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
L+++ +P + K+G TP +A+ G+ + + L K A
Sbjct: 57 --------------------LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI----------PTVRGETPLHLAA 287
DVN G T A+ G + + +L + AN ++ G T L AA
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 288 RANQTDIIRILLRN-GAQVDARAREGHTALSIAQKLGYISVEE-------SLGAAERSQL 339
++++ILL GA V+A G AL A S E GA +
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DV 212
Query: 340 KKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG--EKHKNGLTPLHLCAQEDR 397
RG G T L +A + + G+ + L+ + + +G T L L +
Sbjct: 213 NVRGERGKTPLILAVEKKH-------LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265
Query: 398 VGVAELLLKNNAQVD 412
+AELL K A D
Sbjct: 266 KKIAELLCKRGASTD 280
Score = 153 bits (388), Expect = 1e-42
Identities = 69/299 (23%), Positives = 105/299 (35%), Gaps = 64/299 (21%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS-GLTPLHVASFMGCMNIVIYLLQN 268
+ L A + + LL+ A+VNF + G TPLH A M +IV LL++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
A+P + G TP LAA A ++++ L GA V+ G TA A G +
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKG--VTETLIIAKGDGEKHKNGL 386
+ L +G V + K G
Sbjct: 122 KFL---------------------------YK-----RGANVNLRRKTKEDQERLRKGGA 149
Query: 387 TPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSAS 446
T L A++ V V ++LL E GA NA G L +
Sbjct: 150 TALMDAAEKGHVEVLKILLD------------------EMGADVNACDNMGRNALIHALL 191
Query: 447 EGHADMSA----MLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKG 501
+LL+HGADV+ + G T L +A + + G+ + L+ +
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-------LGLVQRLLEQEH 243
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 168 bits (429), Expect = 4e-49
Identities = 67/282 (23%), Positives = 103/282 (36%), Gaps = 53/282 (18%)
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
+V+ G T L IAS G G ++ V++ +
Sbjct: 2 DVNVRGPDGFTPLMIAS-------------CSGGGLETGNSEEEEDAPAVISDFIYQGAS 48
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKA 169
+ + G T L +A + LLE D G+ LH A D
Sbjct: 49 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT---PLHAAVSADAQGV 105
Query: 170 AKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA 229
++L+ N AT + D G TPL +A+ EG+
Sbjct: 106 FQILIR----------------NRAT---------DLDARMHDGTTPLILAARLAVEGML 140
Query: 230 NILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA 289
L++ ADVN G + LH A+ + ++ + LL+N AN D+ R ETPL LAAR
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE 200
Query: 290 NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ ++LL + A D IAQ+ + + L
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 168 bits (427), Expect = 9e-49
Identities = 65/280 (23%), Positives = 106/280 (37%), Gaps = 49/280 (17%)
Query: 205 NPDVTSKSGFTPLHIASHYGNEG-------------VANILLDKRADV-NFSAKSGLTPL 250
+ +V GFTPL IAS G V + + + A + N + ++G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 251 HVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ-VDARA 309
H+A+ + LL+ A+ +I G TPLH A A+ + +IL+RN A +DAR
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 310 REGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLK 366
+G T L +A +L + E L A + G +AL A +
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHA----DVNAVDDLGKSALHWAAAVNN-------V 170
Query: 367 GVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLE 425
L+ + ++ TPL L A+E A++LL +
Sbjct: 171 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL-------------------D 211
Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH 465
+ A + P ++ H D+ +L H
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH 251
Score = 148 bits (376), Expect = 2e-41
Identities = 60/285 (21%), Positives = 93/285 (32%), Gaps = 70/285 (24%)
Query: 2 GEGHTSFLRAARAGHLDKIIEHL-KNNVDI-NTANANGLNALHLASKDGHLHVVTELLSR 59
G G + +I + N + G ALHLA++ LL
Sbjct: 21 GGGLETGNSEEEEDAPA-VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA 79
Query: 60 GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN- 118
A+ + G T LH A V +L+ N
Sbjct: 80 SADANIQDNMGRTPLHAAV--------------------------SADAQGVFQILIRNR 113
Query: 119 ----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDT 167
D R DG TPL +A + + ++ L+ + D GK ALH AA ++
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS---ALHWAAAVNNV 170
Query: 168 KAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEG 227
AA +L +KN N D+ + TPL +A+ G+
Sbjct: 171 DAAVVL--------------------------LKNGANKDMQNNREETPLFLAAREGSYE 204
Query: 228 VANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
A +LLD A+ + + P +A +IV L +
Sbjct: 205 TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249
Score = 114 bits (289), Expect = 3e-29
Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 63/247 (25%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA- 61
G T+ AAR D + L + + D N + G LH A V L+ A
Sbjct: 57 GETALHLAARYSRSD-AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
++D+ G T L +A+ + + ++ L+ +
Sbjct: 116 DLDARMHDGTTPLILAA--------------------------RLAVEGMLEDLINSHAD 149
Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
+ G + L A + VLL+N D + L +AA++ + AK+L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
L+ + A N D+T P IA + + +L
Sbjct: 210 LD----------------HFA----------NRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Query: 234 DKRADVN 240
+ +
Sbjct: 244 LEHHHHH 250
Score = 77.5 bits (192), Expect = 3e-16
Identities = 44/166 (26%), Positives = 62/166 (37%), Gaps = 35/166 (21%)
Query: 341 KRGREGHTALSIA------QKLGYISVEESLKGVTETLII--AKGDGEKHKNGLTPLHLC 392
RG +G T L IA + G EE V I A + + G T LHL
Sbjct: 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64
Query: 393 AQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADM 452
A+ R A+ LL E A N + G TPLH + S +
Sbjct: 65 ARYSRSDAAKRLL-------------------EASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 453 SAMLLEHGA-DVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
+L+ + A D+ +G T L +A +L +G+ E LI
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAV-------EGMLEDLI 144
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 157 bits (400), Expect = 3e-45
Identities = 53/272 (19%), Positives = 92/272 (33%), Gaps = 56/272 (20%)
Query: 213 GFTPLHIASHYGN-EGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+PL +A+ + + ++ +L + +V+ G T LH+A+ + + L++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 272 -----PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYIS 326
G+T LH+A +++R LL GA V ARA + Y
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY-- 120
Query: 327 VEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNG 385
G LS A +G + + LI D + G
Sbjct: 121 -------------------GEHPLSFAACVGS-------EEIVRLLIEHGADIRAQDSLG 154
Query: 386 LTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVA------GFT 439
T LH+ + A + LL Y + +S+ G T
Sbjct: 155 NTVLHILILQPNKTFACQMYN---------------LLLSYDGGDHLKSLELVPNNQGLT 199
Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471
P L+ EG+ M L++ ++ A H
Sbjct: 200 PFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 134 bits (339), Expect = 2e-36
Identities = 56/288 (19%), Positives = 90/288 (31%), Gaps = 70/288 (24%)
Query: 37 GLNALHLASKDGHLHVVTELL-SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
+ L LA+K+ + +++LL G V G TALHIA+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAA----------------- 45
Query: 96 GFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRL 155
+ + VL+E + V + G+
Sbjct: 46 ---------LYDNLEAAMVLMEA-----------------APELVFEPMTSELYEGQT-- 77
Query: 156 PALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFT 215
ALHIA + + LL +V +A G + P G
Sbjct: 78 -ALHIAVINQNVNLVRALLARGASV-----------SARATGS--VFHYRPHNLIYYGEH 123
Query: 216 PLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI----YLLQNDAN 271
PL A+ G+E + +L++ AD+ G T LH+ LL D
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 272 ------PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH 313
+P +G TP LA + + L++ + A H
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 122 bits (309), Expect = 3e-32
Identities = 53/285 (18%), Positives = 87/285 (30%), Gaps = 87/285 (30%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
L +AAK++D +A LL G T
Sbjct: 6 PLLLAAKENDVQALSKLL-------------------------KFEGCEVHQRGAMGETA 40
Query: 217 LHIASHYGNEGVANILLDKRADV-----NFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
LHIA+ Y N A +L++ ++ G T LH+A +N+V LL A+
Sbjct: 41 LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS 100
Query: 272 -------------PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
P GE PL AA +I+R+L+ +GA + A+ G+T L I
Sbjct: 101 VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Query: 319 AQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLI----- 373
+ + L+
Sbjct: 161 LILQPN-------------------------------------KTFACQMYNLLLSYDGG 183
Query: 374 --IAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK 416
+ + + GLTP L E + + + L++ +
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228
Score = 117 bits (296), Expect = 2e-30
Identities = 50/291 (17%), Positives = 82/291 (28%), Gaps = 88/291 (30%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNN-VDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
+ L AA+ + + + LK +++ A G ALH+A+ +L L+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 63 V-----DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE 117
+ S +G TALHIA + +V LL
Sbjct: 63 LVFEPMTSELYEGQTALHIAV--------------------------INQNVNLVRALLA 96
Query: 118 N----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLL 173
R + + L AA + +LL
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGE----------------HPLSFAACVGSEEIVRLL 140
Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA---- 229
+E + A + G T LHI N+ A
Sbjct: 141 IE----------------HGA----------DIRAQDSLGNTVLHILILQPNKTFACQMY 174
Query: 230 NILLDKRADVN------FSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
N+LL + GLTP +A G + + +L+Q +
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225
Score = 102 bits (256), Expect = 6e-25
Identities = 47/263 (17%), Positives = 80/263 (30%), Gaps = 68/263 (25%)
Query: 246 GLTPLHVASFMGCMNIVI-YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
+PL +A+ + + L GET LH+AA + + +L+ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 305 V-----DARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKL 356
+ + EG TAL IA +++ +L GA
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA----------------------- 99
Query: 357 GYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK 416
SV G + G PL A + LL+
Sbjct: 100 ---SVSARATG----SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI----------- 141
Query: 417 MDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSA----MLLEHGADVSHAA----- 467
E+GA A+ G T LH+ + + + +LL + +
Sbjct: 142 --------EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP 193
Query: 468 -KEGHTALSIAQKLGYISVEESL 489
+G T +A G I + + L
Sbjct: 194 NNQGLTPFKLAGVEGNIVMFQHL 216
Score = 99.6 bits (249), Expect = 6e-24
Identities = 44/220 (20%), Positives = 71/220 (32%), Gaps = 45/220 (20%)
Query: 279 GETPLHLAARANQTDII-RILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
E+PL LAA+ N + ++L G +V R G TAL IA + L
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL------ 56
Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR 397
+ ++ + + G T LH+
Sbjct: 57 ---------------------ME-----AAPE---LVFEPMTSELYEGQTALHIAVINQN 87
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
V + LL A V + +P+ G PL +A G ++ +L+
Sbjct: 88 VNLVRALLARGASVSARATGS------VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141
Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLI 497
EHGAD+ G+T L I + + L+
Sbjct: 142 EHGADIRAQDSLGNTVLHILILQPN---KTFACQMYNLLL 178
Score = 71.5 bits (176), Expect = 2e-14
Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 32/147 (21%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDIN-------------TANANGLNALHLASKDG 48
EG T+ A +++ ++ L ++ G + L A+ G
Sbjct: 74 EGQTALHIAVINQNVN-LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132
Query: 49 HLHVVTELLSRGANVDSATKKGNTALHIAS----------LGEFLV-------PVWLGDF 91
+V L+ GA++ + GNT LHI + L+ L
Sbjct: 133 SEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELV 192
Query: 92 KQGDGFTPLAVAMQQGHDKVVAVLLEN 118
G TP +A +G+ + L++
Sbjct: 193 PNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Score = 50.7 bits (122), Expect = 3e-07
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 4 GHTSFLRAARAGHLDKIIEH----LKNNVDIN------TANANGLNALHLASKDGHLHVV 53
G+T + + L + + N GL LA +G++ +
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213
Query: 54 TELLSRGANVDSATKKGN 71
L+ + ++ +A +
Sbjct: 214 QHLMQKRKHIAAAHHHHH 231
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 156 bits (396), Expect = 2e-44
Identities = 58/285 (20%), Positives = 93/285 (32%), Gaps = 62/285 (21%)
Query: 210 SKSGFTPLHIASHYGNEG----VANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
++ G + LH+A + + V + A +NF TPLH+A I L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
L +P++ RG TPLHLA + +L ++ +
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS---------------- 108
Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG---DGEKH 382
LK GHT L +A GY+ + E L ++ G + ++
Sbjct: 109 ------------ILKATNYNGHTCLHLASIHGYLGIVELL--------VSLGADVNAQEP 148
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
NG T LHL + LLLK GA N + G++P
Sbjct: 149 CNGRTALHLAVDLQNPDLVSLLLKC-------------------GADVNRVTYQGYSPYQ 189
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEE 487
L+ + L + + E S + + E
Sbjct: 190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 153 bits (390), Expect = 1e-43
Identities = 57/303 (18%), Positives = 94/303 (31%), Gaps = 84/303 (27%)
Query: 36 NGLNALHLASKDGHLHVVTE----LLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDF 91
+G + LHLA + E + A ++ T LH+A
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV------------- 53
Query: 92 KQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
++ LL + R G TPL +A +QG V VL ++
Sbjct: 54 -------------ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
+ + A
Sbjct: 101 C----------------------------------TTPHLHSILKATN------------ 114
Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK-SGLTPLHVASFMGCMNIVIYLL 266
+G T LH+AS +G G+ +L+ ADVN +G T LH+A + ++V LL
Sbjct: 115 ---YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYIS 326
+ A+ + T +G +P L T I + L + + E S + +
Sbjct: 172 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE 231
Query: 327 VEE 329
E
Sbjct: 232 FTE 234
Score = 143 bits (362), Expect = 1e-39
Identities = 51/296 (17%), Positives = 81/296 (27%), Gaps = 74/296 (25%)
Query: 3 EGHTSFLRAARAGHLDK---IIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLS 58
+G + A +I + + +N N LHLA + LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 59 RGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
G + + +GNT LH+A +QG V VL ++
Sbjct: 67 AGCDPELRDFRGNTPLHLAC--------------------------EQGCLASVGVLTQS 100
Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSC 178
+ + G LH+A+ +LL+ +
Sbjct: 101 ---CTTPHLHSILKAT-------------NYNGH---TCLHLASIHGYLGIVELLVSLGA 141
Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
V NA +G T LH+A N + ++LL AD
Sbjct: 142 DV-----------NAQEP--------------CNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
VN G +P + I L Q E + T+
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232
Score = 131 bits (331), Expect = 3e-35
Identities = 50/338 (14%), Positives = 85/338 (25%), Gaps = 117/338 (34%)
Query: 123 KDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDP 182
+DG + LH+A ++ ++
Sbjct: 6 EDGDSF-----------------------------LHLAIIHEEKALTMEVIR------- 29
Query: 183 ASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFS 242
+ + + + TPLH+A +A LL D
Sbjct: 30 ---------------QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74
Query: 243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTV------RGETPLHLAARANQTDIIR 296
G TPLH+A GC+ V L Q+ P + ++ G T LHLA+ I+
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKL 356
+L+ GA V+A + G TAL +A L
Sbjct: 135 LLVSLGADVNA---------------------------------QEPCNGRTALHLAVDL 161
Query: 357 GYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPT 415
+ L+ D G +P L + +
Sbjct: 162 QN-------PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ------------ 202
Query: 416 KMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
L + + + +
Sbjct: 203 -------LGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 69.1 bits (170), Expect = 2e-13
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
+ ++G + LHL + + M++ + A N ++ T
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALT---------------MEVIRQVKGDLAFLNFQNNLQQT 47
Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
PLHL+ +++ LL G D G+T L +A + G ++ L
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Score = 29.1 bits (66), Expect = 3.5
Identities = 3/51 (5%), Positives = 12/51 (23%), Gaps = 2/51 (3%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNN-VDINTANANGLNALHLASKDGHLHVV 53
G++ + I + L ++ + ++
Sbjct: 184 GYSPYQLTWGRPSTR-IQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 154 bits (392), Expect = 4e-44
Identities = 56/299 (18%), Positives = 82/299 (27%), Gaps = 89/299 (29%)
Query: 14 AGHLDKIIEHL-KNNVDI-NTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGN 71
+I + N + G ALHLA++ LL A+ + G
Sbjct: 1 GDAPA-VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 59
Query: 72 TALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-----DTRGKDGF 126
T LH A V +L+ N D R DG
Sbjct: 60 TPLHAAV--------------------------SADAQGVFQILIRNRATDLDARMHDGT 93
Query: 127 TPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVL 186
TPL +AA+ + L
Sbjct: 94 TPL-----------------------------ILAARLAVEGMLEDL------------- 111
Query: 187 SSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSG 246
I + + + G + LH A+ N A +LL A+ +
Sbjct: 112 -------------INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158
Query: 247 LTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQV 305
TPL +A+ G LL + AN DI P +A DI+R+L
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217
Score = 153 bits (389), Expect = 1e-43
Identities = 57/270 (21%), Positives = 89/270 (32%), Gaps = 63/270 (23%)
Query: 198 YLIKNEHN-PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFM 256
I + + T ++G T LH+A+ Y A LL+ AD N G TPLH A
Sbjct: 9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 68
Query: 257 GCMNIVIYLLQNDA-NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA 315
+ L++N A + D G TPL LAAR ++ L+ + A V+A G +A
Sbjct: 69 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128
Query: 316 LSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIA 375
L A + L+
Sbjct: 129 LHWA-----------------------AAVNN------------------VDAAVVLLKN 147
Query: 376 KGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAES 434
+ ++ TPL L A+E A++LL + A +
Sbjct: 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDH-------------------FANRDITD 188
Query: 435 VAGFTPLHLSASEGHADMSAMLLEHGADVS 464
P ++ H D+ +L E+ S
Sbjct: 189 HMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 147 bits (374), Expect = 2e-41
Identities = 64/269 (23%), Positives = 103/269 (38%), Gaps = 63/269 (23%)
Query: 224 GNEGVANILLDKRADV-NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP 282
V + + + A + N + ++G T LH+A+ + LL+ A+ +I G TP
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 283 LHLAARANQTDIIRILLRNGAQ-VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKK 341
LH A A+ + +IL+RN A +DAR +G T L +A +L
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV----------------- 104
Query: 342 RGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGV 400
+G+ E LI + D G + LH A + V
Sbjct: 105 ------------------------EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140
Query: 401 AELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG 460
A +LLKN GA + ++ TPL L+A EG + + +LL+H
Sbjct: 141 AVVLLKN-------------------GANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 461 ADVSHAAKEGHTALSIAQKLGYISVEESL 489
A+ IAQ+ + + L
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 145 bits (368), Expect = 1e-40
Identities = 64/289 (22%), Positives = 102/289 (35%), Gaps = 85/289 (29%)
Query: 48 GHLHVVTELLSRGANVDSAT-KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQ 106
V+++ + +GA++ + T + G TALH+A+ +
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAA--------------------------RY 35
Query: 107 GHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAA 162
LLE + + G TPL H A
Sbjct: 36 SRSDAAKRLLEASADANIQDNMGRTPL-----------------------------HAAV 66
Query: 163 KKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH 222
D ++L+ N AT + D G TPL +A+
Sbjct: 67 SADAQGVFQILIR----------------NRAT---------DLDARMHDGTTPLILAAR 101
Query: 223 YGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP 282
EG+ L++ ADVN G + LH A+ + ++ + LL+N AN D+ R ETP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 283 LHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
L LAAR + ++LL + A D IAQ+ + + L
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 144 bits (366), Expect = 2e-40
Identities = 52/286 (18%), Positives = 92/286 (32%), Gaps = 74/286 (25%)
Query: 136 GHDKVVAVLLEN-----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTT 190
V++ + + + ALH+AA+ + AAK L
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL----------------- 44
Query: 191 GNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAKSGLTP 249
++ + ++ G TPLH A +GV IL+ RA D++ G TP
Sbjct: 45 ---------LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 95
Query: 250 LHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARA 309
L +A+ + ++ L+ + A+ + G++ LH AA N D +LL+NGA D +
Sbjct: 96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155
Query: 310 REGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT 369
T L +A + G
Sbjct: 156 NREETPLFLAAREGS-----------------------------------------YETA 174
Query: 370 ETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP 414
+ L+ + P + + + LL + N
Sbjct: 175 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220
Score = 114 bits (289), Expect = 2e-29
Identities = 47/259 (18%), Positives = 82/259 (31%), Gaps = 70/259 (27%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
G T+ AAR D + L + + D N + G LH A V L+ A
Sbjct: 24 TGETALHLAARYSRSD-AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 62 -NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
++D+ G T L +A+ + + ++ L+ +
Sbjct: 83 TDLDARMHDGTTPLILAA--------------------------RLAVEGMLEDLINSHA 116
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKL 172
+ G + L A + VLL+N D + L +AA++ + AK+
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANIL 232
LL+ + A N D+T P IA + + +L
Sbjct: 177 LLD----------------HFA----------NRDITDHMDRLPRDIAQERMHHDIVRLL 210
Query: 233 LDKRADVNFSAKSGLTPLH 251
+ + LH
Sbjct: 211 DEYNLVRS-------PQLH 222
Score = 110 bits (278), Expect = 5e-28
Identities = 48/244 (19%), Positives = 80/244 (32%), Gaps = 70/244 (28%)
Query: 257 GCMNIVIYLLQNDAN-PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTA 315
++ + A+ + GET LHLAAR +++D + LL A + + G T
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 316 LSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIA 375
L A +GV + LI
Sbjct: 62 LHAAVSADA-----------------------------------------QGVFQILIRN 80
Query: 376 KGDG--EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAE 433
+ + +G TPL L A+ G+ E L+ A NA
Sbjct: 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLI-------------------NSHADVNAV 121
Query: 434 SVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVT 493
G + LH +A+ + D + +LL++GA+ T L +A + G
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS-------YETA 174
Query: 494 ETLI 497
+ L+
Sbjct: 175 KVLL 178
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 152 bits (388), Expect = 2e-43
Identities = 51/290 (17%), Positives = 84/290 (28%), Gaps = 89/290 (30%)
Query: 40 ALHLASKDGHLHVVTELL-SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFT 98
LH A + V ELL S+ + + + G LH +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV-------------------- 44
Query: 99 PLAVAMQQGHDKVVAVLLEN-------DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
++ + LL D G+TP
Sbjct: 45 ------SFQAHEITSFLLSKMENVNLDDYPDDSGWTPF---------------------- 76
Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
HIA + + K L + + +
Sbjct: 77 -------HIACSVGNLEVVKSLY-------------DRPLKP-----------DLNKITN 105
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
G T LH+A V+ L++ A V K PLH A+ +G + ++ L +
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 272 P-DIPTVRGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIA 319
+ +G TPL A D +L+ + GA+ D +G A +A
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 151 bits (385), Expect = 5e-43
Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 23/220 (10%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVN---FSAKSGLTPLHVAS 254
L + G PLH + + + + LL K +VN + SG TP H+A
Sbjct: 21 LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80
Query: 255 FMGCMNIVIYLLQNDANPDI--PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREG 312
+G + +V L PD+ T +G T LHLA ++ + L+ NGA V + +
Sbjct: 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140
Query: 313 HTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT 369
L A +G + + E L G + + + ++G T L A G+
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSA---VNWQDKQGWTPLFHALAEGH-------GDAA 190
Query: 370 ETLIIAKG--DGEKHKNGLTPLHLCAQEDRVGVAELLLKN 407
L+ G G + E V + L N
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFLNN 227
Score = 146 bits (372), Expect = 4e-41
Identities = 56/310 (18%), Positives = 94/310 (30%), Gaps = 96/310 (30%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNN-VDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
+ +A K+ E L + + + +G LH + + + LLS+ N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 63 V---DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN- 118
V D G T HIA G+ +VV L +
Sbjct: 62 VNLDDYPDDSGWTPFHIAC--------------------------SVGNLEVVKSLYDRP 95
Query: 119 -----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLL 173
+ G T LH+A K + ++ L
Sbjct: 96 LKPDLNKITNQGVTC-----------------------------LHLAVGKKWFEVSQFL 126
Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
+E +V IK+ K PLH A+ G+ + +L
Sbjct: 127 IENGASVR------------------IKD--------KFNQIPLHRAASVGSLKLIELLC 160
Query: 234 DK-RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND-ANPDIPTVRGETPLHLAARANQ 291
++ VN+ K G TPL A G + + L++ A D+ +G +A
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---N 217
Query: 292 TDIIRILLRN 301
+ + L N
Sbjct: 218 EQVKKFFLNN 227
Score = 120 bits (303), Expect = 2e-31
Identities = 49/262 (18%), Positives = 73/262 (27%), Gaps = 71/262 (27%)
Query: 246 GLTPLHVASFMGCMNIVI-YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
PLH A V L + G PLH + +I LL
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
V+ G T IA +G + V +S
Sbjct: 62 VNLD-------------------------------DYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 365 LKGVTETLIIAKGDG----EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA 420
L + + G+T LHL + V++ L++N
Sbjct: 91 L--------YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN------------- 129
Query: 421 TTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHG-ADVSHAAKEGHTALSIAQK 479
GA + PLH +AS G + +L G + V+ K+G T L A
Sbjct: 130 ------GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 480 LGYISVEESLKGVTETLIIAKG 501
G+ L+ G
Sbjct: 184 EGH-------GDAAVLLVEKYG 198
Score = 102 bits (257), Expect = 5e-25
Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 20/161 (12%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL---KNNVDINTANANGLNALHLASKDGHLHVVTELLSR 59
G T F A G+L+ +++ L D+N G+ LHLA V L+
Sbjct: 71 SGWTPFHIACSVGNLE-VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129
Query: 60 GANVDSATKKGNTALHIASLG------EFLVPVWLGD--FKQGDGFTPLAVAMQQGHDKV 111
GA+V K LH A+ E L + ++ G+TPL A+ +GH
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 112 VAVLLEN-----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
+L+E D G VA+ +++V L N
Sbjct: 190 AVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 150 bits (381), Expect = 1e-42
Identities = 40/290 (13%), Positives = 77/290 (26%), Gaps = 83/290 (28%)
Query: 31 NTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGD 90
G + A EL ++ T +T +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT------------ 53
Query: 91 FKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTR 150
+G ++ + + + PL
Sbjct: 54 --------------SKGRTGLIPSNYVAE-QAESIDNPL--------------------- 77
Query: 151 GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS 210
H AAK+ + + + N +
Sbjct: 78 --------HEAAKRGNLSWLR--------------------------ECLDNRVGVNGLD 103
Query: 211 KSGFTPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
K+G T L+ A H G++ + +L + ++N K G T LH A++ G +IV LL
Sbjct: 104 KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
A D+ + + +A A +++ A E + +
Sbjct: 164 ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213
Score = 149 bits (378), Expect = 3e-42
Identities = 41/274 (14%), Positives = 75/274 (27%), Gaps = 67/274 (24%)
Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
P K G + A + + L + D+ + T + G ++
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
+ + PLH AA+ +R L N V+ + G TAL A
Sbjct: 65 YVAEQAES-----IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA------ 113
Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG--EKHK 383
GH K + E L +++K
Sbjct: 114 -----------------CHGGH------------------KDIVEMLFTQPNIELNQQNK 138
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
G T LH A + + +LLL GA+ + ++ +
Sbjct: 139 LGDTALHAAAWKGYADIVQLLLAK-------------------GARTDLRNIEKKLAFDM 179
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+ + A + A + + E + +
Sbjct: 180 ATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213
Score = 125 bits (316), Expect = 2e-33
Identities = 39/263 (14%), Positives = 62/263 (23%), Gaps = 66/263 (25%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
G RA E DI + G L V
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-----GLIPSNYV 66
Query: 64 DSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----D 119
+ + LH A+ ++G+ + L+N +
Sbjct: 67 AEQAESIDNPLHEAA--------------------------KRGNLSWLRECLDNRVGVN 100
Query: 120 TRGKDGFTPLAVAMQQGHDKVVAVLLEN-----DTRGKVRLPALHIAAKKDDTKAAKLLL 174
K G T L A GH +V +L + + K+ ALH AA K +LLL
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
A D+ + +A++ +
Sbjct: 161 A----------------KGA----------RTDLRNIEKKLAFDMATNAACASLLKKKQG 194
Query: 235 KRADVNFSAKSGLTPLHVASFMG 257
A S +
Sbjct: 195 TDAVRTLSNAEDYLDDEDSDLEH 217
Score = 118 bits (299), Expect = 6e-31
Identities = 40/235 (17%), Positives = 65/235 (27%), Gaps = 36/235 (15%)
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
P P G+ + A + L + T G + S
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG--EKHKNGLTPL 389
+ ++ L A K G +S + G K G T L
Sbjct: 65 ------YVAEQAESIDNPLHEAAKRGNLSWLREC--------LDNRVGVNGLDKAGSTAL 110
Query: 390 HLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
+ + E+L + N ++ G T LH +A +G+
Sbjct: 111 YWACHGGHKDIVEMLFTQ------------------PNIELNQQNKLGDTALHAAAWKGY 152
Query: 450 ADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL--KGVTETLIIAKGD 502
AD+ +LL GA E A +A S+ + TL A+
Sbjct: 153 ADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207
Score = 102 bits (257), Expect = 3e-25
Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 66/231 (28%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
T++ + G L + + + N LH A+K G+L + E L
Sbjct: 44 MSDTNWWKGTSKGRTG-----LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG 98
Query: 63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
V+ K G+TAL+ A GH +V +L
Sbjct: 99 VNGLDKAGSTALYWAC--------------------------HGGHKDIVEMLFTQPNIE 132
Query: 119 -DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
+ + K G T L A +G+ +V +LL D R + A +A K
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLK-- 190
Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYG 224
+ +++ + +
Sbjct: 191 ------------------------KKQGTDAVRTLSNAEDYLDDEDSDLEH 217
Score = 81.5 bits (202), Expect = 7e-18
Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 33/141 (23%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL--KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
G T+ A GH D I+E L + N+++N N G ALH A+ G+ +V LL++G
Sbjct: 105 AGSTALYWACHGGHKD-IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Query: 61 ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDT 120
A D + A +A+ ++ D
Sbjct: 164 ARTDLRNIEKKLAFDMAT--------------------------NAACASLLKKKQGTDA 197
Query: 121 ----RGKDGFTPLAVAMQQGH 137
+ + + + H
Sbjct: 198 VRTLSNAEDYLDDEDSDLEHH 218
Score = 43.0 bits (102), Expect = 7e-05
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLH 51
E +F A A + + + +NA + + H H
Sbjct: 172 EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 148 bits (374), Expect = 2e-41
Identities = 56/254 (22%), Positives = 92/254 (36%), Gaps = 32/254 (12%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
S ++A + + +L ++ + + T LH A G IV +LLQ
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ G +PLH+AA A +I++ LL GA V+A + G T L A + L
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD--GEKHKNGLTPL 389
+ + TA+ A G + + +++ + G TPL
Sbjct: 126 -LEGGANPDAKDHYDATAMHRAAAKGNLKMVH--------ILLFYKASTNIQDTEGNTPL 176
Query: 390 HLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
HL E+RV A+ L+ GA E+ TPL ++ G
Sbjct: 177 HLACDEERVEEAKFLV-------------------TQGASIYIENKEEKTPLQVAK--GG 215
Query: 450 ADMSAMLLEHGADV 463
+ L G +
Sbjct: 216 LGLILKRLAEGEEA 229
Score = 131 bits (331), Expect = 2e-35
Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 35/258 (13%)
Query: 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
+ ++A + + ++ ++ T +
Sbjct: 8 IMICNLAYSGKLDELKE--------------------------RILADKSLATRTDQDSR 41
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
T LH A G+ + LL VN +G +PLH+A+ G IV LL A+ +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 275 PTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAA 334
G TPLH AA N+ +I +LL GA DA+ TA+ A G + + L
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL-LF 160
Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQ 394
++ + EG+T L +A + + L ++ ++K TPL +
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI------YIENKEEKTPLQVAK- 213
Query: 395 EDRVGVAELLLKNNAQVD 412
+G+ L +
Sbjct: 214 -GGLGLILKRLAEGEEAS 230
Score = 131 bits (330), Expect = 3e-35
Identities = 58/281 (20%), Positives = 96/281 (34%), Gaps = 62/281 (22%)
Query: 34 NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQ 93
+ + +LA + +L+ + + TALH A
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC--------------- 48
Query: 94 GDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-- 147
GH ++V LL+ + + G++PL +A G D++V LL
Sbjct: 49 -----------SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 148 --DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHN 205
+ + LH AA K+ + A L++ N
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAV--------------------------MLLEGGAN 131
Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
PD T +H A+ GN + +ILL +A N G TPLH+A + +L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVD 306
+ A+ I +TPL +A +I L G +
Sbjct: 192 VTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEAS 230
Score = 128 bits (323), Expect = 3e-34
Identities = 59/278 (21%), Positives = 96/278 (34%), Gaps = 63/278 (22%)
Query: 6 TSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVD 64
A +G LD++ E + + + + ALH A GH +V LL G V+
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 65 SATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DT 120
G + LHIA+ G D++V LL +
Sbjct: 68 DKDDAGWSPLHIAA--------------------------SAGXDEIVKALLVKGAHVNA 101
Query: 121 RGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
++G TPL A + ++ +LLE D + A+H AA K + K
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH----- 156
Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
L+ + + ++ G TPLH+A A L+ +
Sbjct: 157 ---------------------ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
A + K TPL VA G + +++ L +
Sbjct: 196 ASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
Score = 97.2 bits (242), Expect = 4e-23
Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 34/215 (15%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAE 335
+LA ++ +L + + ++ TAL A G+ + E L G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV-- 64
Query: 336 RSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQ 394
+ + G + L IA + + L++ ++NG TPLH A
Sbjct: 65 --PVNDKDDAGWSPLHIA-------ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115
Query: 395 EDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSA 454
++R +A +LL E GA P+A+ T +H +A++G+ M
Sbjct: 116 KNRHEIAVMLL-------------------EGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 455 MLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+LL + A + EG+T L +A + + L
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Score = 74.5 bits (183), Expect = 2e-15
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLE 425
E + + +L + E +L + + + +I LL+
Sbjct: 2 EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
G N + AG++PLH++AS G ++ LL GA V+ + G T L A +
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 486 EESL 489
L
Sbjct: 122 AVML 125
Score = 71.8 bits (176), Expect = 2e-14
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANV 63
G + AA AG + + L +N N NG LH A+ + LL GAN
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 64 DSATKKGNTALHIASLGEFLVPVWL-------GDFKQGDGFTPLAVAMQQGHDKVVAVLL 116
D+ TA+H A+ L V + + + +G TPL +A + + L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 117 EN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
K+ TPL VA +G ++ L
Sbjct: 193 TQGASIYIENKEEKTPLQVA--KGGLGLILKRLAE 225
Score = 54.9 bits (132), Expect = 1e-08
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
T+ RAA G+L + L N + G LHLA + + L+++GA+
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197
Query: 63 VDSATKKGNTALHIAS 78
+ K+ T L +A
Sbjct: 198 IYIENKEEKTPLQVAK 213
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 145 bits (368), Expect = 3e-41
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 29/196 (14%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
+ ++ + A +L L+ E++ + GF+P
Sbjct: 8 DIFTQCREGNAVAVRLWLD-------------------------NTENDLNQGDDHGFSP 42
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
LH A G V +L+ + A +N + TPLH+A+ G +IV LLQ A+ +
Sbjct: 43 LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 102
Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GA 333
G PLH A Q + L+ NGA V + G + A+ + E G
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Query: 334 -AERSQLKKRGREGHT 348
R K +G T
Sbjct: 163 NLNRIPYKDTFWKGTT 178
Score = 126 bits (320), Expect = 3e-34
Identities = 46/242 (19%), Positives = 67/242 (27%), Gaps = 68/242 (28%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRA-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
S + GN + LD D+N G +PLH A G +V L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
A ++ +TPLHLAA DI++ LL+ A ++A G+ L A
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA--------- 112
Query: 329 ESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLT 387
G V E L+ +K G
Sbjct: 113 --------------CFWGQDQ------------------VAEDLVANGALVSICNKYGEM 140
Query: 388 PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE 447
P+ R + E K G N P + +
Sbjct: 141 PVDKAKAPLRELLRERAEKM-------------------GQNLNR------IPYKDTFWK 175
Query: 448 GH 449
G
Sbjct: 176 GT 177
Score = 120 bits (304), Expect = 4e-32
Identities = 44/260 (16%), Positives = 72/260 (27%), Gaps = 92/260 (35%)
Query: 33 ANANGLNALHLASKDGHLHVVTELLSRGAN-VDSATKKGNTALHIASLGEFLVPVWLGDF 91
+ ++ + ++G+ V L N ++ G + LH A
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC------------- 47
Query: 92 KQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
++G VV +L+ + + TPL +A GH +V LL+
Sbjct: 48 -------------REGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
A + NA NEH
Sbjct: 95 K----------------------------------ADI------NA-------VNEH--- 104
Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ 267
G PLH A +G + VA L+ A V+ K G P+ A + +
Sbjct: 105 -----GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159
Query: 268 NDANPDIPTVRGETPLHLAA 287
N + P
Sbjct: 160 MGQNLN------RIPYKDTF 173
Score = 116 bits (294), Expect = 9e-31
Identities = 39/234 (16%), Positives = 73/234 (31%), Gaps = 67/234 (28%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDAN-PDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
+ + G V L N N + G +PLH A R ++ ++ +L+ GA+
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
++ R T L +A GH
Sbjct: 65 INVMNRGDDTPLHLA-----------------------ASHGH----------------- 84
Query: 365 LKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTL 423
+ + + L+ K D +++G PLH + VAE L+ N
Sbjct: 85 -RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN---------------- 127
Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSH-----AAKEGHT 472
GA + + G P+ + + + + G +++ +G T
Sbjct: 128 ---GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTT 178
Score = 105 bits (266), Expect = 6e-27
Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 28/165 (16%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL--KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
E R G+ + D+N + +G + LH A ++G VV L+ RG
Sbjct: 4 EFMDDIFTQCREGNAV-AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 61 ANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQ 106
A ++ + +T LH+A+ + L+ + G PL A
Sbjct: 63 ARINVMNRGDDTPLHLAASHGHRDIVQKLL-------QYKADINAVNEHGNVPLHYACFW 115
Query: 107 GHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
G D+V L+ N K G P+ A + + +
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160
Score = 77.5 bits (192), Expect = 8e-17
Identities = 28/138 (20%), Positives = 43/138 (31%), Gaps = 32/138 (23%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
T AA GH D I++ L + DIN N +G LH A G V +L++ GA
Sbjct: 72 DDTPLHLAASHGHRD-IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
Query: 63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRG 122
V K G + A + + + G
Sbjct: 131 VSICNKYGEMPVDKAK--------------------------APLRELLRERAEKM---G 161
Query: 123 KD-GFTPLAVAMQQGHDK 139
++ P +G +
Sbjct: 162 QNLNRIPYKDTFWKGTTR 179
Score = 70.2 bits (173), Expect = 3e-14
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 18/107 (16%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
+ + +E L L N N GF+PLH
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTE------------------NDLNQGDDHGFSPLH 44
Query: 443 LSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+ EG + + ML+ GA ++ + T L +A G+ + + L
Sbjct: 45 WACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 144 bits (365), Expect = 5e-40
Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 22/242 (9%)
Query: 206 PDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
P+ +G L + + V F+ L L +S G ++V +
Sbjct: 1 PE---ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRI 56
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
+ +P +P G T LH A A T+I++ L++ G V+A +G T L A +
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV 116
Query: 326 SVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEK 381
V + L GAA + + + GY ++ L + G
Sbjct: 117 QVCKFLVESGAAVFAMTYS-DMQTAADKCEEMEEGY-------TQCSQFLYGVQEKMGIM 168
Query: 382 HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPL 441
+K + L + EL +K + + D + + E G+ P
Sbjct: 169 NKGVIYALWDYEPQ---NDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKE---GYVPR 222
Query: 442 HL 443
+L
Sbjct: 223 NL 224
Score = 131 bits (331), Expect = 3e-35
Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 34/239 (14%)
Query: 123 KDGFTPLAVAMQQGHDKVVAVLLENDTR---GKVRLPALHIAAKKDDTKAAKLLLEVSCT 179
G L + K + + + R + L L ++ + + +
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQ-------- 54
Query: 180 VDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADV 239
+I +P + + G T LH A G+ + L+ +V
Sbjct: 55 ------------------RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 240 NFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGE---TPLHLAARANQTDIIR 296
N + G TPLH A+ + + +L+++ A T T +
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156
Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
L ++ + AL + E + + + R E A+
Sbjct: 157 FLYGVQEKMGIMNKGVIYALWDYEPQNDD--ELPMKEGDCMTIIHREDEDEIEWWWARL 213
Score = 118 bits (299), Expect = 9e-31
Identities = 39/262 (14%), Positives = 67/262 (25%), Gaps = 61/262 (23%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
+G L + + L ++ + D+++ ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
EG TAL A GH
Sbjct: 62 DPSLPNDEGITALHNA-----------------------VCAGH---------------- 82
Query: 364 SLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATT 422
+ + L+ + +G TPLH A + V V + L+++ A V T D+ T
Sbjct: 83 --TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT- 139
Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
EG+ S L + K AL +
Sbjct: 140 ---------------AADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND 184
Query: 483 ISVEESLKGVTETLIIAKGDGE 504
E +K II + D +
Sbjct: 185 D--ELPMKEGDCMTIIHREDED 204
Score = 116 bits (293), Expect = 6e-30
Identities = 35/296 (11%), Positives = 76/296 (25%), Gaps = 86/296 (29%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNN-VDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
G S R + + + N L L +S +G +V ++ +
Sbjct: 5 GQVSLPPGKRTNLRK-TGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
+G TALH A GH ++V L++
Sbjct: 63 PSLPNDEGITALHNAV--------------------------CAGHTEIVKFLVQFGVNV 96
Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKAAK 171
+ DG+TPL A + +V L+E+ ++ T+ ++
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156
Query: 172 LLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANI 231
+L + + +K L + +
Sbjct: 157 --------------------------FLYGVQEKMGIMNKGVIYALWDYEP---QNDDEL 187
Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA 287
+ + + + + + + + + G P +L
Sbjct: 188 PMKEGDCMTIIHREDE------------DEIEWWWARLNDKE-----GYVPRNLLG 226
Score = 111 bits (280), Expect = 3e-28
Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 23/183 (12%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
L ++ G D +++ + D + N G+ ALH A GH +V L+ G
Sbjct: 36 LPLALLLDSSLEGEFD-LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 62 NVDSATKKGNTALHIASLG------EFLV----PVWLGDFKQGDGFTPLAVAMQQGHDKV 111
NV++A G T LH A+ +FLV V+ + M++G+ +
Sbjct: 95 NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154
Query: 112 VAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDT-----RGKVRLPALHIAA 162
L K L Q D++ + E D R A
Sbjct: 155 SQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL--PMKEGDCMTIIHREDEDEIEWWWAR 212
Query: 163 KKD 165
D
Sbjct: 213 LND 215
Score = 110 bits (277), Expect = 8e-28
Identities = 34/273 (12%), Positives = 67/273 (24%), Gaps = 77/273 (28%)
Query: 36 NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
G +L + +E ++ G V L +S
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KFNPLPLALLLDSS----------------- 45
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN---- 147
+G +V ++ +G T L A+ GH ++V L++
Sbjct: 46 ---------LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 148 ---DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEH 204
D+ G LH AA ++ + K L+E V A
Sbjct: 97 NAADSDGW---TPLHCAASCNNVQVCKFLVESGAAV-----------FAM---------- 132
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
+ G + L + + K + L + +
Sbjct: 133 --TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMK 190
Query: 265 ------LLQNDANPDIPTVRGETPLHLAARANQ 291
++ + E A ++
Sbjct: 191 EGDCMTIIHREDE-------DEIEWWWARLNDK 216
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 140 bits (354), Expect = 2e-38
Identities = 52/293 (17%), Positives = 97/293 (33%), Gaps = 56/293 (19%)
Query: 112 VAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDT 167
V ++ + T +G + + GH + + AA+K D
Sbjct: 3 VNKIIGSRT-AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADE 58
Query: 168 KAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEG 227
+A LLE + + D ++G T L + G++
Sbjct: 59 QALSQLLE----------------DR-----------DVDAVDENGRTALLFVAGLGSDK 91
Query: 228 VANILLDKRADVNF-SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLA 286
+L + AD++ + GLT LH+A+ +V L++ A+ ++ RG T L LA
Sbjct: 92 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Query: 287 ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREG 346
+T ++ G ++ E + Q Y V+E ++KRG +G
Sbjct: 152 REILKTTPKGNPMQFGRRIGL---EKVINVLEGQVFEYAEVDE--------IVEKRG-KG 199
Query: 347 HTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVG 399
+ + E + K+ L E +G
Sbjct: 200 KDVEYLVRWKDGGDCEWVK--------GVHVAEDVAKDYEDGLEYAVAESVIG 244
Score = 135 bits (341), Expect = 1e-36
Identities = 55/297 (18%), Positives = 102/297 (34%), Gaps = 62/297 (20%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
I ++ A + L+E G++ + DV S+ TP
Sbjct: 4 NKIIGSRTAGEGAMEYLIE------------WKDGHSPSWVPSS--YIAADVVSE-YETP 48
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
A+ +E + LL + DV+ ++G T L + +G V L + A+ D
Sbjct: 49 WWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107
Query: 277 VR-GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---G 332
+R G T LH+AA + +++ L+ GA ++ G TAL +A+++ + + + G
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 167
Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLC 392
+ G E + Q Y V+E + EK G +L
Sbjct: 168 R-------RIGLEKVINVLEGQVFEYAEVDEIV--------------EKRGKGKDVEYLV 206
Query: 393 AQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
+D + + A+ A+ L + +E
Sbjct: 207 RWKDGGDCEWVKGVH-------------------VAEDVAK--DYEDGLEYAVAESV 242
Score = 129 bits (327), Expect = 1e-34
Identities = 44/298 (14%), Positives = 83/298 (27%), Gaps = 76/298 (25%)
Query: 30 INTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLG 89
+ G + KDGH A+V + T A+
Sbjct: 8 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAA----------- 53
Query: 90 DFKQGDGFTPLAVAMQQGHDKVVAVLLEN---DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
++ ++ ++ LLE+ D ++G T L G DK V +L E
Sbjct: 54 ---------------RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98
Query: 147 -----NDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIK 201
+ + L ALH+AA + + L+E A
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE----------------LGA------- 135
Query: 202 NEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNI 261
+ +V + G T L +A + + + + +
Sbjct: 136 ---DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEV 189
Query: 262 VIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
+ + G+ +L + D + + A+ A+ E L A
Sbjct: 190 DEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYA 237
Score = 129 bits (327), Expect = 1e-34
Identities = 47/269 (17%), Positives = 74/269 (27%), Gaps = 50/269 (18%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
G I G+ ADV TP A+ + LL+ D +
Sbjct: 15 GAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDV 70
Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332
D G T L A +R+L GA +D R G
Sbjct: 71 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-------------------- 110
Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHL 391
G TAL +A V E L+ D + + GLT L L
Sbjct: 111 -------------GLTALHMAAGYVR-------PEVVEALVELGADIEVEDERGLTALEL 150
Query: 392 CAQEDRVGVAELLLKNNAQV---DTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
+ + ++ ++ ++ + + G +L +
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210
Query: 449 HADMSAMLLEHGADVSHAAKEGHTALSIA 477
D + H A+ AK+ L A
Sbjct: 211 GGDCEWVKGVHVAEDV--AKDYEDGLEYA 237
Score = 118 bits (297), Expect = 2e-30
Identities = 44/271 (16%), Positives = 76/271 (28%), Gaps = 51/271 (18%)
Query: 1 SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
+GEG +L + GH + D+ + A++ +++LL
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-D 67
Query: 61 ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE--- 117
+VD+ + G TAL + G DK V +L E
Sbjct: 68 RDVDAVDENGRTALLFVA--------------------------GLGSDKCVRLLAEAGA 101
Query: 118 --NDTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTK 168
+ + G T L +A +VV L+E D RG AL +A + T
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL---TALELAREILKTT 158
Query: 169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV 228
++ + L + G ++
Sbjct: 159 PKGNPMQFGRRIG----LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214
Query: 229 ANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
+ A+ AK L A +
Sbjct: 215 EWVKGVHVAEDV--AKDYEDGLEYAVAESVI 243
Score = 108 bits (272), Expect = 4e-27
Identities = 55/298 (18%), Positives = 71/298 (23%), Gaps = 94/298 (31%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
G I S EG + G + A+
Sbjct: 1 GEVNKIIGSRTAGEGA-------------------MEYLIEWKDGHSPSWVPSSYIAADV 41
Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLG 332
ETP AAR + LL VDA G TAL LG L
Sbjct: 42 V---SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL- 96
Query: 333 AAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG---DGEKHKNGLTPL 389
G D + GLT L
Sbjct: 97 -----------------------------------------AEAGADLDHRDMRGGLTAL 115
Query: 390 HLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
H+ A R V E L+ E GA E G T L L+
Sbjct: 116 HMAAGYVRPEVVEALV-------------------ELGADIEVEDERGLTALELAREILK 156
Query: 450 ADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL----KGVTETLIIAKGDG 503
++ G + E + Q Y V+E + KG ++ DG
Sbjct: 157 TTPKGNPMQFGRRIGL---EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDG 211
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 136 bits (344), Expect = 8e-38
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKNNVD-INTANANGLNALHLASKDGHLHVVTELLSRGAN 62
S + A G LD++ EHL+ + +N + G L AS G + V LL GA+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 63 VDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQGH 108
K+ +AL +AS G L+ ++ +G TPL A++ H
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLL-------ERDVDINIYDWNGGTPLLYAVRGNH 114
Query: 109 DKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
K V LL T G+TP+ +A+ G+ KV V+ +
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 130 bits (331), Expect = 5e-36
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 32/195 (16%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
++H A + + K L K ++ + + GFTP
Sbjct: 5 SIHQLAAQGELDQLKEHLR-------------------------KGDNLVNKPDERGFTP 39
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
L AS +G LL+ AD + AK + L +AS G +IV LL+ D + +I
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GA 333
G TPL A R N + LL GA + A G+T + +A LGY V++ +
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 334 AERSQLKKRGREGHT 348
+L +
Sbjct: 160 ----KLFQSNLVPAD 170
Score = 129 bits (326), Expect = 3e-35
Identities = 44/230 (19%), Positives = 68/230 (29%), Gaps = 62/230 (26%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRAD-VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+H + G L K + VN + G TPL AS G + V +LL+ A+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
P I E+ L LA+ TDI+ +LL ++ G T L A
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA------------ 109
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLH 390
R H E L+ D + +G TP+
Sbjct: 110 -----------VRGNHVK------------------CVEALLARGADLTTEADSGYTPMD 140
Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTP 440
L V +++ + K ++ P
Sbjct: 141 LAVALGYRKVQQVIE-------------------NHILKLFQSNLVPADP 171
Score = 127 bits (322), Expect = 8e-35
Identities = 43/248 (17%), Positives = 71/248 (28%), Gaps = 86/248 (34%)
Query: 40 ALHLASKDGHLHVVTELLSRGAN-VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFT 98
++H + G L + E L +G N V+ ++G T L AS
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS-------------------- 44
Query: 99 PLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVR 154
G + V LLE K+ + L
Sbjct: 45 ------AFGEIETVRFLLEWGADPHILAKERESAL------------------------- 73
Query: 155 LPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGF 214
+A+ T LLLE + + ++ +G
Sbjct: 74 ----SLASTGGYTDIVGLLLER---------------DV-----------DINIYDWNGG 103
Query: 215 TPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDI 274
TPL A + LL + AD+ A SG TP+ +A +G + + +
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ 163
Query: 275 PTVRGETP 282
+ P
Sbjct: 164 SNLVPADP 171
Score = 125 bits (318), Expect = 3e-34
Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 62/229 (27%)
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDAN-PDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
+H + G ++ + L+ N + P RG TPL A+ + + +R LL GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
A+E +ALS+A G+T
Sbjct: 62 PHILAKERESALSLA-----------------------STGGYTD--------------- 83
Query: 365 LKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTL 423
+ L+ D NG TPL + + V E LL
Sbjct: 84 ---IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR---------------- 124
Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHT 472
GA E+ +G+TP+ L+ + G+ + ++ H + +
Sbjct: 125 ---GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 95.2 bits (238), Expect = 4e-23
Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 32/131 (24%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
E ++ A+ G+ D I+ L + +VDIN + NG L A + H+ V LL+RGA
Sbjct: 68 ERESALSLASTGGYTD-IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
++ + G T + +A G+ KV V+ +
Sbjct: 127 DLTTEADSGYTPMDLAV--------------------------ALGYRKVQQVIENHILK 160
Query: 119 -DTRGKDGFTP 128
P
Sbjct: 161 LFQSNLVPADP 171
Score = 70.5 bits (174), Expect = 2e-14
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 18/101 (17%)
Query: 385 GLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
+H A + + + L+ N GFTPL +
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDN------------------LVNKPDERGFTPLIWA 43
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
++ G + LLE GAD AKE +ALS+A GY +
Sbjct: 44 SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDI 84
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 135 bits (342), Expect = 1e-37
Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 42/206 (20%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+ +H + G +++ +N + + G TPL A+ G + +V +LLQN A+
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
P + E+ L LA TDI+++LL G V+ G T L A
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA------------ 109
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLH 390
H + L+ + D + +G +
Sbjct: 110 -----------VHGNHVK------------------CVKMLLESGADPTIETDSGYNSMD 140
Query: 391 LCAQEDRVGVAELLLKNNAQVDTPTK 416
L V +++ + ++ K
Sbjct: 141 LAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 134 bits (341), Expect = 2e-37
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 25/164 (15%)
Query: 2 GEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
G S + A G + + ++ IN + G L A+ G + VV LL GA
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 62 NVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQG 107
+ K +AL +A + L+ G +G TPL A+
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLL-------DCGVDVNEYDWNGGTPLLYAVHGN 113
Query: 108 HDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
H K V +LLE+ G+ + +A+ G+ V V+ +
Sbjct: 114 HVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157
Score = 131 bits (333), Expect = 3e-36
Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 26/175 (14%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
++H A + + +E + T + GFTP
Sbjct: 6 SVHQLAAQGEMLYLATRIEQEN--------------------------VINHTDEEGFTP 39
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
L A+ +G V LL AD K + L +A G +IV LL + +
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
G TPL A N +++LL +GA G+ ++ +A LGY SV++ +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 127 bits (321), Expect = 1e-34
Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 61/226 (26%)
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
+ +H + G M + ++ + + G TPL AA Q ++ LL+NGA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
+ +ALS+A +G+
Sbjct: 62 PQLLGKGRESALSLA-----------------------CSKGY----------------- 81
Query: 365 LKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTL 423
+ + L+ D E NG TPL + V ++LL++
Sbjct: 82 -TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES---------------- 124
Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKE 469
GA P E+ +G+ + L+ + G+ + ++ H + KE
Sbjct: 125 ---GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 126 bits (319), Expect = 3e-34
Identities = 34/242 (14%), Positives = 63/242 (26%), Gaps = 85/242 (35%)
Query: 36 NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
++H + G + + + + ++ ++G T L A+
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA----------------- 44
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
G VV LL+N GK + L
Sbjct: 45 ---------AHGQIAVVEFLLQNGADPQLLGKGRESAL---------------------- 73
Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
+A K T K L+ + +
Sbjct: 74 -------SLACSKGYTDIVK--------------------------MLLDCGVDVNEYDW 100
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+G TPL A H + +LL+ AD SG + +A +G ++ + +
Sbjct: 101 NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160
Query: 272 PD 273
Sbjct: 161 LL 162
Score = 112 bits (283), Expect = 2e-29
Identities = 39/213 (18%), Positives = 60/213 (28%), Gaps = 61/213 (28%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
+H A + + + ++ EG T L A
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA------------------ 43
Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQED 396
G A V E L+ D K + L L +
Sbjct: 44 -----AAHGQIA------------------VVEFLLQNGADPQLLGKGRESALSLACSKG 80
Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
+ ++LL G N G TPL + H ML
Sbjct: 81 YTDIVKMLLDC-------------------GVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 457 LEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
LE GAD + G+ ++ +A LGY SV++ +
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 62.8 bits (154), Expect = 7e-12
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
G T L A H+ ++ L ++ D +G N++ LA G+ V + S
Sbjct: 101 NGGTPLLYAVHGNHVK-CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Query: 62 NVDSATKK 69
+ K+
Sbjct: 160 KLLQNIKE 167
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 141 bits (357), Expect = 1e-37
Identities = 45/323 (13%), Positives = 89/323 (27%), Gaps = 58/323 (17%)
Query: 3 EGHTSFLRAARAGH---LDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSR 59
+ AA G LD + L ++ + A A LA+++GHLHV+ L
Sbjct: 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150
Query: 60 GANVDSATK--KGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE 117
A + A +A+ + GH V+ L E
Sbjct: 151 APTEIMAMIQAENYHAFRLAA--------------------------ENGHLHVLNRLCE 184
Query: 118 -------NDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAA 170
+ ++ + A+ +GH V+ LL+ A + +
Sbjct: 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY---AEIHEFEYGEKYVN 241
Query: 171 KLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN 230
+ V+ + + G + GF L +E + +
Sbjct: 242 PFIA---RHVNRLKEMHDAFKLSNPDGVFDLVTKSE---CLQGFYMLRNLIRRNDEVLLD 295
Query: 231 IL--------LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETP 282
+ + A L +A +G LL + +
Sbjct: 296 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL---TKANN 352
Query: 283 LHLAARANQTDIIRILLRNGAQV 305
++ + D+ + L +
Sbjct: 353 YYINETGGRLDLRAVALEHHHHH 375
Score = 117 bits (294), Expect = 5e-29
Identities = 35/300 (11%), Positives = 77/300 (25%), Gaps = 38/300 (12%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
L + H + S+ I +LL V +A+ G
Sbjct: 80 QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139
Query: 258 CMNIVIYLLQNDANPDIPTVR--GETPLHLAARANQTDIIRILLRNGAQV---DARAREG 312
++++ L + + ++ LAA ++ L +A
Sbjct: 140 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 199
Query: 313 HTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT 369
+ A G+ +V L G + LK +
Sbjct: 200 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV----NPFIARHVNRLKEMH 255
Query: 370 ETLIIAKGDG-------EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATT 422
+ ++ DG + G L + + + + + + ++
Sbjct: 256 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI-----------RFLLSIP 304
Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS--------HAAKEGHTAL 474
++ A L L+ G+ A+LL + ++ G L
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDL 364
Score = 116 bits (292), Expect = 8e-29
Identities = 41/368 (11%), Positives = 99/368 (26%), Gaps = 71/368 (19%)
Query: 133 MQQGHDKVVAVLLE--NDTRGKVRLPALHIAA-KKDDTKAAKLLLEVSCTVDPASVLSST 189
M + + + + L + +L L+ A ++ + + + +++
Sbjct: 42 MTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI 101
Query: 190 TGNAATGG-----YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAK 244
+ L+ ++ V + +A+ G+ V N L + +
Sbjct: 102 --TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159
Query: 245 S--GLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR--GETPLHLAARAN-QTDIIRILL 299
+A+ G ++++ L + ++ AA ++I LL
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 219
Query: 300 RNGAQVD----------------------ARAREGHTALSIAQKLGYISVEESLGAAERS 337
+ R +E H A ++ G +
Sbjct: 220 DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT-------- 271
Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG--DGEKHKNGLTPLHLCAQE 395
K +G L + + + ++ + I + L L +
Sbjct: 272 --KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 329
Query: 396 DRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
G LLL + + +++ + G D+ A+
Sbjct: 330 GNQGACALLLSIPSVLALTKA----------------------NNYYINETGGRLDLRAV 367
Query: 456 LLEHGADV 463
LEH
Sbjct: 368 ALEHHHHH 375
Score = 101 bits (253), Expect = 1e-23
Identities = 37/275 (13%), Positives = 74/275 (26%), Gaps = 64/275 (23%)
Query: 1 SGEGHTSFLRAARAGHLDKIIEHL---KNNVDINTANANGLNALHLAS-KDGHLHVVTEL 56
E + +F AA GHL ++ L A A A+ GH +V+ L
Sbjct: 160 QAENYHAFRLAAENGHLH-VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218
Query: 57 LSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLL 116
L + A V + + + A + + V L+
Sbjct: 219 LDCPVMLAYAEIHEFEYGEKY--------VNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 270
Query: 117 ENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
GF L +++ + ++ + + LL +
Sbjct: 271 TKSE-CLQGFYMLRNLIRRNDEVLLDDI--------------------------RFLLSI 303
Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
IK L +A GN+G +LL
Sbjct: 304 P---------------------GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342
Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+ + + ++ G +++ L++ +
Sbjct: 343 SVLALTKA---NNYYINETGGRLDLRAVALEHHHH 374
Score = 36.5 bits (84), Expect = 0.018
Identities = 12/63 (19%), Positives = 21/63 (33%)
Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
L K +S ++ D +LL V E + A +A + G+
Sbjct: 81 LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 140
Query: 483 ISV 485
+ V
Sbjct: 141 LHV 143
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 134 bits (339), Expect = 8e-37
Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 10/206 (4%)
Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ 267
+ + L A+ + V IL D V+ G TPL++A + I L+
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 268 NDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ-VDARAREGHTALSIAQKLGYIS 326
A+ ++ ++P A +T+I+ +L++ ++ R G AL A + G+I
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 327 VEESL---GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKH 382
+ L G + + + G+TAL A L + + + + L+ D K
Sbjct: 121 NVKLLLEDGRED---IDFQNDFGYTALIEAVGLR--EGNQLYQDIVKLLMENGADQSIKD 175
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNN 408
+G T + Q+ ++++L + N
Sbjct: 176 NSGRTAMDYANQKGYTEISKILAQYN 201
Score = 129 bits (327), Expect = 5e-35
Identities = 48/276 (17%), Positives = 82/276 (29%), Gaps = 90/276 (32%)
Query: 34 NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQ 93
L A++ V L VD +GNT L+IA
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV--------------- 47
Query: 94 GDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDT 149
++ L++ + + +P A QG +++A +L++
Sbjct: 48 -----------HNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH-- 94
Query: 150 RGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT 209
N+HN
Sbjct: 95 -----------------------------------------------ATPDLNKHN---- 103
Query: 210 SKSGFTPLHIASHYGNEGVANILLDK-RADVNFSAKSGLTPLHVASFM-----GCMNIVI 263
+ G L A+ G+ +LL+ R D++F G T L A + +IV
Sbjct: 104 -RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162
Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
L++N A+ I G T + A + T+I +IL
Sbjct: 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 122 bits (310), Expect = 1e-32
Identities = 46/222 (20%), Positives = 81/222 (36%), Gaps = 37/222 (16%)
Query: 121 RGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
+ + L A Q+ KV +L + D L+IA +D + AK L++
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKR 236
A + ++ + +P A G + +L
Sbjct: 62 ---------------GA-----------DINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95
Query: 237 A-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQN-DANPDIPTVRGETPLHLAARANQ--- 291
D+N + G L A+ G ++ V LL++ + D G T L A +
Sbjct: 96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155
Query: 292 --TDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
DI+++L+ NGA + G TA+ A + GY + + L
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 120 bits (304), Expect = 8e-32
Identities = 43/278 (15%), Positives = 79/278 (28%), Gaps = 92/278 (33%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
E A + + E L ++ + G L++A + + + L+ RGA
Sbjct: 5 EVGALLEAANQRDTKK-VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
+++ ++ A QG +++A +L++
Sbjct: 64 DINLQNSISDSPYLYAG--------------------------AQGRTEILAYMLKHATP 97
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
+ + G L AA+K KLLLE
Sbjct: 98 DLNKHNRYGGNA-----------------------------LIPAAEKGHIDNVKLLLED 128
Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEG-----VANI 231
G + D + G+T L A + +
Sbjct: 129 --------------GRE-----------DIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163
Query: 232 LLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
L++ AD + SG T + A+ G I L Q +
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 118 bits (299), Expect = 3e-31
Identities = 40/254 (15%), Positives = 80/254 (31%), Gaps = 68/254 (26%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
L A+ + L D G TPL++A N +I + L+ GA
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
++ + + A G +G
Sbjct: 64 DINLQNSISDSPYLYA-----------------------GAQGR---------------- 84
Query: 364 SLKGVTETLIIAKGDG---EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIA 420
+ ++ + ++ G L A++ + +LLL++
Sbjct: 85 --TEILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR----------- 130
Query: 421 TTLLEYGAKPNAESVAGFTPLHLSA-----SEGHADMSAMLLEHGADVSHAAKEGHTALS 475
+ ++ G+T L + ++ + D+ +L+E+GAD S G TA+
Sbjct: 131 -------EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183
Query: 476 IAQKLGYISVEESL 489
A + GY + + L
Sbjct: 184 YANQKGYTEISKIL 197
Score = 75.9 bits (188), Expect = 4e-16
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 381 KHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEY 426
K L Q D V E+L QVD ++IA L++
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGA-DVSHAAKEGHTALSIAQKLGYISV 485
GA N ++ +P + ++G ++ A +L+H D++ + G AL A + G+
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH--- 118
Query: 486 EESLKGVTETLI 497
+ L+
Sbjct: 119 ----IDNVKLLL 126
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 129 bits (327), Expect = 2e-34
Identities = 53/301 (17%), Positives = 85/301 (28%), Gaps = 65/301 (21%)
Query: 202 NEHNPDVTSKSGFTPLHIASHYGNEGVANILLD-------KRADVNFS-AKSGLTPLHVA 253
E P + A N LL + D F ++G T L A
Sbjct: 5 GEKPPR---LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 254 SF---MGCMNIVIYLLQNDANPDIPT-----------VRGETPLHLAARANQTDIIRILL 299
G + + LL D +G+T LH+A ++ +L+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 300 RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI 359
NGA V A A + + Y G LS+A +
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFY--------------------FGELPLSLAACTNQL 161
Query: 360 SVEESLKGVTETLIIAKGDG-----EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTP 414
++ + L + + G T LH + V + +
Sbjct: 162 AIVKFL--------LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI- 212
Query: 415 TKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVS----HAAKEG 470
+ + L + G TPL L+AS G + A +L+ AA
Sbjct: 213 --LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270
Query: 471 H 471
H
Sbjct: 271 H 271
Score = 128 bits (324), Expect = 6e-34
Identities = 60/327 (18%), Positives = 97/327 (29%), Gaps = 101/327 (30%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVT-SKSGFT 215
++ A + + + + LL K + + ++G T
Sbjct: 16 SIFDAVAQSNCQELESLLPF-------------------LQRSKKRLTDSEFKDPETGKT 56
Query: 216 PLHIAS---HYGNEGVANILLDKRADVNF-----------SAKSGLTPLHVASFMGCMNI 261
L A H G +LLD + S G T LH+A M +
Sbjct: 57 CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116
Query: 262 VIYLLQNDAN--------------PDIPTVRGETPLHLAARANQTDIIRILLRNG---AQ 304
V L++N A+ GE PL LAA NQ I++ LL+N A
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176
Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
+ AR G+T L ++ +V+ T + + +
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDN------------------TKFVTSMYNEILILGAK 218
Query: 365 LKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLL 424
L + I ++ GLTPL L A ++GV +L+
Sbjct: 219 LHPTLKLEEI------TNRKGLTPLALAASSGKIGVLAYILQREIH-------------- 258
Query: 425 EYGAKPNAESVAGFTPLHLSASEGHAD 451
H +A H
Sbjct: 259 ------------EPECRHAAAHHHHHH 273
Score = 122 bits (308), Expect = 1e-31
Identities = 49/279 (17%), Positives = 77/279 (27%), Gaps = 67/279 (24%)
Query: 11 AARAGHLDKIIEHLKNNVDIN-TANANGLNALHLAS---KDGHLHVVTELLSRGANVDSA 66
L + K D G L A +G + LL DS
Sbjct: 27 QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86
Query: 67 TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-------- 118
+ N + G T L +A+++ + +V +L+EN
Sbjct: 87 KQFVNASYTD---------------SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131
Query: 119 ----------DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----------DTRGKVRLPAL 158
G PL++A +V LL+N D+ G L
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT---VL 188
Query: 159 HIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLH 218
H + D V S G L ++T++ G TPL
Sbjct: 189 HALVEVADNTVDNTKF----------VTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238
Query: 219 IASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
+A+ G GV +L + H A+
Sbjct: 239 LAASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270
Score = 114 bits (287), Expect = 7e-29
Identities = 55/318 (17%), Positives = 89/318 (27%), Gaps = 83/318 (26%)
Query: 29 DINTANANGLNALHLASKDGHLHVVTELL-------SRGANVD-SATKKGNTALHIASLG 80
++ A + + LL R + + + G T L A L
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKV 140
G + +A+LL+ R D V
Sbjct: 65 L-----------------------HNGQNDTIALLLDVA-RKTDSLKQF----------V 90
Query: 141 VAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLI 200
A ++ +G+ ALHIA ++ + LL+E A V AA G
Sbjct: 91 NASYTDSYYKGQT---ALHIAIERRNMTLVTLLVENG-----ADV------QAAANGDFF 136
Query: 201 KNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK---RADVNFSAKSGLTPLHVASFMG 257
K G PL +A+ + LL AD++ G T LH +
Sbjct: 137 KK-TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195
Query: 258 CMNIVI----------------YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN 301
+ L +I +G TPL LAA + + ++ +L+
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255
Query: 302 GAQVDARAREGHTALSIA 319
A
Sbjct: 256 EIH-------EPECRHAA 266
Score = 95.2 bits (237), Expect = 4e-22
Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 36/209 (17%)
Query: 27 NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPV 86
N + G ALH+A + ++ +VT L+ GA+V +A G +
Sbjct: 91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY---- 146
Query: 87 WLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKDGFTPLAVAMQQGHDK 139
G PL++A +V LL+N R G T L ++ +
Sbjct: 147 --------FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNT 198
Query: 140 VVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLS--STTGNAATGG 197
V + I K LE + L+ +++G
Sbjct: 199 VDNTKFVTSMYN-----EILILGAKLHPTLK---LEEITNRKGLTPLALAASSGKIGVLA 250
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNE 226
Y+++ E H A+H+ +
Sbjct: 251 YILQRE-------IHEPECRHAAAHHHHH 272
Score = 83.7 bits (207), Expect = 3e-18
Identities = 49/289 (16%), Positives = 81/289 (28%), Gaps = 74/289 (25%)
Query: 236 RADVNFSAKSGLTPLHVASFMGCMNIVIYLLQ-------NDANPDIP-TVRGETPLHLA- 286
A + A + LL + + G+T L A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 287 --ARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGR 344
Q D I +LL + D+ +++ + A
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDS-------------------LKQFVNA----SYTDSYY 99
Query: 345 EGHTALSIAQKLGYISVEESL--KGV------TETLIIAKGDGEKHKNGLTPLHLCAQED 396
+G TAL IA + +++ L G G PL L A +
Sbjct: 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH------- 449
++ + + LL+N+ Q A +A G T LH
Sbjct: 160 QLAIVKFLLQNSWQ----------------PADISARDSVGNTVLHALVEVADNTVDNTK 203
Query: 450 --ADMSAMLLEHGADVSHAA-------KEGHTALSIAQKLGYISVEESL 489
M +L GA + ++G T L++A G I V +
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252
Score = 68.3 bits (167), Expect = 6e-13
Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 31/179 (17%)
Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLI--IAKGDGEKHKNGLT 387
S+ A E+ + R ++ A ESL + + + + + G T
Sbjct: 1 SVSAGEKPP-RLYDR---RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKT 56
Query: 388 PLHLCAQEDRVG---VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLS 444
L G LLL + D+ + A G T LH++
Sbjct: 57 CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF--------VNASYTDSYYKGQTALHIA 108
Query: 445 ASEGHADMSAMLLEHGADVSHAAKE--------------GHTALSIAQKLGYISVEESL 489
+ + +L+E+GADV AA G LS+A +++ + L
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167
Score = 56.3 bits (136), Expect = 6e-09
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 6 TSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDS 65
T F+ + L + N GL L LA+ G + V+ +L R +
Sbjct: 202 TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--- 258
Query: 66 ATKKGNTALHIAS 78
H A+
Sbjct: 259 ----EPECRHAAA 267
Score = 34.8 bits (80), Expect = 0.052
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLH 51
+G T AA +G + ++ ++ + H A+ H H
Sbjct: 232 KGLTPLALAASSGKIG-VLAYILQR------EIHEPECRHAAAHHHHHH 273
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 125 bits (318), Expect = 3e-34
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 26/175 (14%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
L AAK D + K L V + N TP
Sbjct: 11 QLLEAAKAGDVETVKKLCTV---------------QSV----------NCRDIEGRQSTP 45
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
LH A+ Y V LL ADV+ K GL PLH A G + L+++ A ++
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ TPLH AA + +I ++LL++GA + R+G+T L + + G +++ L
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159
Score = 108 bits (273), Expect = 6e-28
Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 44/201 (21%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKR-ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
L A+ G+ L + + TPLH A+ +++V YLLQ+
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
A+ G PLH A ++ +L+++GA V+ T L A
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA---------- 115
Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTP 388
+G + + L+ D +K+++G TP
Sbjct: 116 -------------AAKGK------------------YEICKLLLQHGADPTKKNRDGNTP 144
Query: 389 LHLCAQEDRVGVAELLLKNNA 409
L L ++ + +LL + A
Sbjct: 145 LDL-VKDGDTDIQDLLRGDAA 164
Score = 101 bits (254), Expect = 3e-25
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 29/165 (17%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL--KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
E L AA+AG ++ ++ L +V+ LH A+ + VV LL G
Sbjct: 7 EADRQLLEAAKAGDVE-TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 61 ANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQ 106
A+V + K G LH A E LV K G FTPL A +
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLV-------KHGAVVNVADLWKFTPLHEAAAK 118
Query: 107 GHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
G ++ +LL++ + +DG TPL + + G + +L +
Sbjct: 119 GKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGD 162
Score = 99.4 bits (249), Expect = 1e-24
Identities = 46/242 (19%), Positives = 69/242 (28%), Gaps = 87/242 (35%)
Query: 34 NANGLNALHLASKDGHLHVVTELLSR-GANVDSATKKGNTALHIASLGEFLVPVWLGDFK 92
N+ L A+K G + V +L + N + +T LH A+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA-------------- 50
Query: 93 QGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEND 148
VV LL++ + K G P
Sbjct: 51 ------------GYNRVSVVEYLLQHGADVHAKDKGGLVP-------------------- 78
Query: 149 TRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDV 208
LH A + A+L L+K+ +V
Sbjct: 79 ---------LHNACSYGHYEVAEL--------------------------LVKHGAVVNV 103
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
FTPLH A+ G + +LL AD + G TPL + G +I L +
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162
Query: 269 DA 270
A
Sbjct: 163 AA 164
Score = 95.5 bits (239), Expect = 3e-23
Identities = 46/213 (21%), Positives = 71/213 (33%), Gaps = 63/213 (29%)
Query: 279 GETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
+ L AA+A + ++ L T L A
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA------------------ 49
Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQED 396
V E L+ D K K GL PLH
Sbjct: 50 -----AGYNR------------------VSVVEYLLQHGADVHAKDKGGLVPLHNACSYG 86
Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
VAELL+K+ GA N + FTPLH +A++G ++ +L
Sbjct: 87 HYEVAELLVKH-------------------GAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 457 LEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
L+HGAD + ++G+T L + + G +++ L
Sbjct: 128 LQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159
Score = 43.1 bits (103), Expect = 4e-05
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
T AA G + I + L ++ D N +G L L G + L A
Sbjct: 108 KFTPLHEAAAKGKYE-ICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 124 bits (313), Expect = 2e-33
Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 35/191 (18%)
Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVS 177
+G + + GH + + AA+K D +A LLE
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLLE-- 65
Query: 178 CTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
+ + D ++G T L + G++ +L + A
Sbjct: 66 --------------DR-----------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100
Query: 238 DVNF-SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
D++ + GLT LH+A+ +V L++ A+ ++ RG T L LA +T
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 160
Query: 297 ILLRNGAQVDA 307
++ G ++
Sbjct: 161 NPMQFGRRIGL 171
Score = 112 bits (282), Expect = 4e-29
Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 32/192 (16%)
Query: 141 VAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLI 200
V ++ + T G+ + I K + +
Sbjct: 2 VNKIIGSRTAGEGAME-YLIEWKDGHSPSWVPSSY------------------------- 35
Query: 201 KNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMN 260
DV S+ TP A+ +E + LL + DV+ ++G T L + +G
Sbjct: 36 ---IAADVVSE-YETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDK 90
Query: 261 IVIYLLQNDANPDIPTVR-GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
V L + A+ D +R G T LH+AA + +++ L+ GA ++ G TAL +A
Sbjct: 91 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Query: 320 QKLGYISVEESL 331
+++ + + +
Sbjct: 151 REILKTTPKGNP 162
Score = 108 bits (272), Expect = 1e-27
Identities = 42/281 (14%), Positives = 71/281 (25%), Gaps = 109/281 (38%)
Query: 25 KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLV 84
N + + G + KDGH A+V + T A+
Sbjct: 2 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAA------ 52
Query: 85 PVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---DTRGKDGFTPLAVAMQQGHDKVV 141
++ ++ ++ LLE+ D ++G T L
Sbjct: 53 --------------------RKADEQALSQLLEDRDVDAVDENGRTAL------------ 80
Query: 142 AVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIK 201
A K +LL E
Sbjct: 81 -----------------LFVAGLGSDKCVRLLAE-------------------------- 97
Query: 202 NEHNPDV---TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGC 258
D+ + G T LH+A+ Y V L++ AD+ + GLT L +A +
Sbjct: 98 --AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 155
Query: 259 MNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
P+ R +I +L
Sbjct: 156 TTPK-----------------GNPMQFGRRIGLEKVINVLE 179
Score = 99.9 bits (250), Expect = 1e-24
Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 43/194 (22%)
Query: 1 SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
+GEG +L + GH + D+ + A++ +++LL
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-D 66
Query: 61 ANVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG---------DGFTPLAVAMQ 105
+VD+ + G TAL + L + G G T L +A
Sbjct: 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLA-------EAGADLDHRDMRGGLTALHMAAG 119
Query: 106 QGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIA 161
+VV L+E + + G T L +A + ++
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF-------------G 166
Query: 162 AKKDDTKAAKLLLE 175
+ K +L
Sbjct: 167 RRIGLEKVINVLEG 180
Score = 92.2 bits (230), Expect = 7e-22
Identities = 33/212 (15%), Positives = 56/212 (26%), Gaps = 62/212 (29%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
G + + + A V + E T A + L
Sbjct: 13 EGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQL------ 63
Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDR 397
L+ D +NG T L A
Sbjct: 64 ---------------------------LED-------RDVD-AVDENGRTALLFVAGLGS 88
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
LL + A +D G T LH++A ++ L+
Sbjct: 89 DKCVRLLAEAGADLDHRDMRG------------------GLTALHMAAGYVRPEVVEALV 130
Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
E GAD+ + G TAL +A+++ + + +
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTPKGNP 162
Score = 86.4 bits (215), Expect = 6e-20
Identities = 42/228 (18%), Positives = 62/228 (27%), Gaps = 52/228 (22%)
Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
+ + +A G + G + A+ ETP AAR
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQA 59
Query: 295 IRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQ 354
+ LL VDA G TAL LG L
Sbjct: 60 LSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLL----------------------- 95
Query: 355 KLGYISVEESLKGVTETLIIAKG---DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQV 411
G D + GLT LH+ A R V E L++ A +
Sbjct: 96 -------------------AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136
Query: 412 DTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
+ + + T LE + + G P+ G + +L
Sbjct: 137 EV--EDERGLTALELAREILKTTPKG-NPMQFGRRIGLEKVINVLEGQ 181
Score = 72.9 bits (180), Expect = 3e-15
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANAN-GLNALHLASKDGHLHVVTELLSRG 60
G T+ L A G + L + D++ + GL ALH+A+ VV L+ G
Sbjct: 75 NGRTALLFVAGLGSDK-CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133
Query: 61 ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
A+++ ++G TAL +A P P+ + G +KV+ VL
Sbjct: 134 ADIEVEDERGLTALELAREILKTTPKGN----------PMQFGRRIGLEKVINVLEGQ 181
Score = 69.1 bits (170), Expect = 8e-14
Identities = 28/122 (22%), Positives = 38/122 (31%), Gaps = 13/122 (10%)
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD----TP-------TKMDIATTLLEYGA 428
G + ++ A V TP + LLE
Sbjct: 9 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DR 67
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHA-AKEGHTALSIAQKLGYISVEE 487
+A G T L A G +L E GAD+ H + G TAL +A V E
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 488 SL 489
+L
Sbjct: 128 AL 129
Score = 42.1 bits (100), Expect = 1e-04
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+ + G + +GH+ ADV E T A + L
Sbjct: 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQL 63
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 122 bits (310), Expect = 3e-33
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 29/176 (16%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDV-TSKSGFT 215
L AA+ ++L+ + T G +
Sbjct: 5 KLLEAARAGQDDEVRILMA----------------------------NGAPFTTDWLGTS 36
Query: 216 PLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIP 275
PLH+A+ YG+ +LL + K TPLH+A+ G NIV LL++ A+ +
Sbjct: 37 PLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 276 TVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ T LH A N +++ +L++ GA V +++ TA I+ G + E L
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 114 bits (287), Expect = 5e-30
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 213 GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANP 272
L A+ G + IL+ A + G +PLH+A+ G + LL+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 273 DIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL- 331
D T TPLH+AA +I+ +LL++GA V+A+ TAL A + + V E L
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 332 --GAAERSQLKKRGREGHTALSIAQKLGYISVEESLK 366
GA + + + TA I+ G + E L+
Sbjct: 121 KYGA----DVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 102 bits (257), Expect = 7e-26
Identities = 53/213 (24%), Positives = 77/213 (36%), Gaps = 62/213 (29%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
L AARA Q D +RIL+ NGA G + L +A
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPLHLA------------------- 41
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
+ GH TE L+ A + K TPLH+ A E
Sbjct: 42 ----AQYGH------------------FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
+ E+LLK+ GA NA+ + T LH + H ++ +L+
Sbjct: 80 ANIVEVLLKH-------------------GADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
++GADV +K TA I+ G + E L+
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 99.8 bits (250), Expect = 6e-25
Identities = 45/236 (19%), Positives = 71/236 (30%), Gaps = 90/236 (38%)
Query: 36 NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
+ L A++ G V L++ GA G + LH+A+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAA----------------- 42
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
Q GH VLL D R K TP
Sbjct: 43 ---------QYGHFSTTEVLLRAGVSRDARTKVDRTP----------------------- 70
Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
LH+AA + ++LL +H DV +K
Sbjct: 71 ------LHMAASEGHANIVEVLL----------------------------KHGADVNAK 96
Query: 212 S--GFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYL 265
T LH A+ + ++ V +L+ ADV+ +K T ++ G ++ L
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 99.8 bits (250), Expect = 6e-25
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 28/161 (17%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
+ L AARAG D + L N + G + LHLA++ GH LL G
Sbjct: 1 DLGKKLLEAARAGQDD-EVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 62 NVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQG 107
+ D+ TK T LH+A+ E L+ K G T L A +
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLL-------KHGADVNAKDMLKMTALHWATEHN 111
Query: 108 HDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVL 144
H +VV +L++ T+ K T +++ G++ + +L
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 122 bits (309), Expect = 4e-33
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Query: 203 EHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIV 262
E + + L A+ G LL+ A+ N G P+ V MG +
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVA 60
Query: 263 IYLLQNDANPDIPTVRGET-PLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
LL + A P+ T P+H AAR D + +L R GA++D R G + +A++
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
Query: 322 LGYISVEESL 331
LG+ V L
Sbjct: 121 LGHRDVARYL 130
Score = 111 bits (281), Expect = 3e-29
Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 34/165 (20%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
L AA + + + LLE NP+ + G P
Sbjct: 15 WLATAAARGRVEEVRALLEAGA--------------------------NPNAPNSYGRRP 48
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLT-PLHVASFMGCMNIVIYLLQNDANPDIP 275
+ + G+ VA +LL A+ N + + LT P+H A+ G ++ ++ L + A D+
Sbjct: 49 IQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR 107
Query: 276 TVRGETPLHLAARANQTDIIRILLRNGAQVDAR------AREGHT 314
G P+ LA D+ R L A EG +
Sbjct: 108 DAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152
Score = 99.9 bits (250), Expect = 5e-25
Identities = 35/221 (15%), Positives = 57/221 (25%), Gaps = 70/221 (31%)
Query: 233 LDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQT 292
++ A + + L A+ G + V LL+ ANP+ P G P+ +
Sbjct: 1 MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57
Query: 293 DIIRILLRNGAQVDARAREGHT-ALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALS 351
+ +LL +GA+ + T + A REG
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDA-----------------------AREGF---- 90
Query: 352 IAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQ 410
L A + G P+ L + VA L
Sbjct: 91 --------------LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136
Query: 411 VDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHAD 451
G + A+EG +D
Sbjct: 137 TR------------------------GSNHARIDAAEGPSD 153
Score = 97.5 bits (244), Expect = 4e-24
Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 22/156 (14%)
Query: 24 LKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG--- 80
++ + + L A+ G + V LL GAN ++ G + + +G
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR 58
Query: 81 --EFLVPVWLG---DFKQGDGFT-PLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLA 130
E L+ G + T P+ A ++G + VL D R G P+
Sbjct: 59 VAELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116
Query: 131 VAMQQGHDKVVAVLLEN--DTRGKVRLPALHIAAKK 164
+A + GH V L TRG I A +
Sbjct: 117 LAEELGHRDVARYLRAAAGGTRGSN---HARIDAAE 149
Score = 96.4 bits (241), Expect = 9e-24
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 71/215 (33%)
Query: 266 LQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYI 325
++ A + L AA + + +R LL GA +A G + +
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---- 54
Query: 326 SVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGE-KHKN 384
G V E L++ +
Sbjct: 55 --------------------GSAR------------------VAELLLLHGAEPNCADPA 76
Query: 385 GLT-PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
LT P+H A+E + +L GA+ + G P+ L
Sbjct: 77 TLTRPVHDAAREGFLDTLVVLH-------------------RAGARLDVRDAWGRLPVDL 117
Query: 444 SASEGHADMSAMLLEHGADV------SHAAKEGHT 472
+ GH D++ L A EG +
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152
Score = 90.2 bits (225), Expect = 2e-21
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 374 IAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK-------------MDIA 420
+ G + L A RV LL+ A + P +A
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVA 60
Query: 421 TTLLEYGAKPNAESVAGFT-PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
LL +GA+PN A T P+H +A EG D +L GA + G + +A++
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
Query: 480 LGYISVEESL 489
LG+ V L
Sbjct: 121 LGHRDVARYL 130
Score = 79.1 bits (196), Expect = 1e-17
Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 31/141 (21%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGL-NALHLASKDGHLHVVTELLSRG 60
G G + E L + + N A+ L +H A+++G L + L G
Sbjct: 44 YGRRPIQVMMM-GSAR-VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101
Query: 61 ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDT 120
A +D G + +A + GH V L
Sbjct: 102 ARLDVRDAWGRLPVDLAE--------------------------ELGHRDVARYLRAAAG 135
Query: 121 RGKDGFTPLAVAMQQGHDKVV 141
G G + +G +
Sbjct: 136 -GTRGSNHARIDAAEGPSDIP 155
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 123 bits (312), Expect = 5e-33
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 30/210 (14%)
Query: 123 KDGFTPLAVAMQQGHDKVVAVLL-ENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVD 181
K+G + ++ ++ + L D+ + L +A A
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRNYRDSYNRT---PLMVACMLGMENAID---------- 52
Query: 182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNF 241
L++N + G T L A G+A LL K ++VN
Sbjct: 53 ----------------KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 242 SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRN 301
SG TPL + G + +LL++ AN + + GETPL +A++ +++I++ LL
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156
Query: 302 GAQVDARAREGHTALSIAQKLGYISVEESL 331
GA + AR G TA + A+ G V +
Sbjct: 157 GADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 119 bits (302), Expect = 1e-31
Identities = 49/215 (22%), Positives = 78/215 (36%), Gaps = 32/215 (14%)
Query: 89 GDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLEN- 147
G +G + ++ ++ + L R TPL VA G + + L+EN
Sbjct: 1 GSHMDKNGEIVEKIKDEKSINQNLDFLRN--YRDSYNRTPLMVACMLGMENAIDKLVENF 58
Query: 148 ---DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEH 204
+ + AL A K + A+ L+
Sbjct: 59 DKLEDKDIEGSTALIWAVKNNRLGIAE--------------------------KLLSKGS 92
Query: 205 NPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIY 264
N + SG TPL + +G ++ LL+ A+VN G TPL VAS G IV
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 265 LLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
LL+ A+ + G T A + ++I+I
Sbjct: 153 LLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 118 bits (298), Expect = 4e-31
Identities = 45/253 (17%), Positives = 78/253 (30%), Gaps = 67/253 (26%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
K+G I + L + R TPL VA +G N + L++N
Sbjct: 5 DKNGEIVEKIKDEKSINQNLDFLRNYRD------SYNRTPLMVACMLGMENAIDKLVENF 58
Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
+ + G T L A + N+ I LL G+ V+ + G T L + GY
Sbjct: 59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY----- 113
Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTP 388
++ L+ + +++ G TP
Sbjct: 114 ------------------------------------SEMSYFLLEHGANVNDRNLEGETP 137
Query: 389 LHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
L + ++ R + + LL E GA +A + G T + G
Sbjct: 138 LIVASKYGRSEIVKKLL-------------------ELGADISARDLTGLTAEASARIFG 178
Query: 449 HADMSAMLLEHGA 461
++ + E
Sbjct: 179 RQEVIKIFTEVRR 191
Score = 103 bits (259), Expect = 9e-26
Identities = 48/247 (19%), Positives = 81/247 (32%), Gaps = 67/247 (27%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
K+G + + +L N + TPL +A + I L+ N
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLR-NYRDSY-----NRTPLMVACMLGMENAIDKLVENFD 59
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
+++ + EG TAL A +
Sbjct: 60 KLEDKDIEGSTALIWA-----------------------VKNNR---------------- 80
Query: 364 SLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATT 422
G+ E L+ + K +G TPL ++ LL++
Sbjct: 81 --LGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH--------------- 123
Query: 423 LLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGY 482
GA N ++ G TPL +++ G +++ LLE GAD+S G TA + A+ G
Sbjct: 124 ----GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 483 ISVEESL 489
V +
Sbjct: 180 QEVIKIF 186
Score = 102 bits (257), Expect = 2e-25
Identities = 38/250 (15%), Positives = 75/250 (30%), Gaps = 76/250 (30%)
Query: 1 SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
G + + N ++ L +A G + + +L+
Sbjct: 5 DKNGEIVEKIKDEKSINQNL------DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENF 58
Query: 61 ANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
++ +G+TAL A + + LL
Sbjct: 59 DKLEDKDIEGSTALIWAV--------------------------KNNRLGIAEKLLSKGS 92
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKA 169
+T+ G TPL ++ G+ ++ LLE+ + G+ L +A+K ++
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE---TPLIVASKYGRSEI 149
Query: 170 AKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK--SGFTPLHIASHYGNEG 227
K LLE D++++ +G T A +G +
Sbjct: 150 VKKLLE----------------------------LGADISARDLTGLTAEASARIFGRQE 181
Query: 228 VANILLDKRA 237
V I + R
Sbjct: 182 VIKIFTEVRR 191
Score = 66.6 bits (164), Expect = 6e-13
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 17/127 (13%)
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLL--KNNAQVDTP-------TKMDIATTLLEYGAKP 430
KNG + ++ + L +++ TP + L+E K
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFLRNYRDS-YNRTPLMVACMLGMENAIDKLVENFDKL 61
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
+ + G T L + ++ LL G++V+ G T L + GY
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY-------S 114
Query: 491 GVTETLI 497
++ L+
Sbjct: 115 EMSYFLL 121
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 120 bits (305), Expect = 6e-33
Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+G TPLH+A+ G+ V +LL+ ADVN K+G TPLH+A+ G + +V LL+ A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ G TPLHLAAR +++++LL GA V+A+ + G T L +A + G++ V + L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 109 bits (275), Expect = 1e-28
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 26/147 (17%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
LH+AA+ + KLLLE + + K+G TP
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGA--------------------------DVNAKDKNGRTP 38
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
LH+A+ G+ V +LL+ ADVN K+G TPLH+A+ G + +V LL+ A+ +
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 277 VRGETPLHLAARANQTDIIRILLRNGA 303
G TPLHLAAR +++++LL GA
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 100 bits (253), Expect = 1e-25
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 32/149 (21%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
G T AAR GHL+ +++ L + D+N + NG LHLA+++GHL VV LL GA+
Sbjct: 2 GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
V++ K G T LH+A+ + GH +VV +LLE
Sbjct: 61 VNAKDKNGRTPLHLAA--------------------------RNGHLEVVKLLLEAGADV 94
Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
+ + K+G TPL +A + GH +VV +LLE
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 89.3 bits (223), Expect = 2e-21
Identities = 58/184 (31%), Positives = 78/184 (42%), Gaps = 61/184 (33%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
G TPLHLAAR +++++LL GA V+A+ + G T L +A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA------------------- 42
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
R GH V + L+ A D K KNG TPLHL A+
Sbjct: 43 ----ARNGH------------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
+ V +LLL+ GA NA+ G TPLHL+A GH ++ +LL
Sbjct: 81 LEVVKLLLEA-------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 458 EHGA 461
E GA
Sbjct: 122 EAGA 125
Score = 83.9 bits (209), Expect = 1e-19
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 14/120 (11%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAK 429
NG TPLHL A+ + V +LLL+ A V+ K +++ LLE GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
NA+ G TPLHL+A GH ++ +LLE GADV+ K G T L +A + G++ V + L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 78.9 bits (196), Expect = 6e-18
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 34/151 (22%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN--- 147
+G TPL +A + GH +VV +LLE + + K+G TPL +A + GH +VV +LLE
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 148 -DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNP 206
+ + K LH+AA+ + K L++ +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVK--------------------------LLLEAGADV 94
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
+ K+G TPLH+A+ G+ V +LL+ A
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 78.9 bits (196), Expect = 7e-18
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
G T AAR GHL+ +++ L + D+N + NG LHLA+++GHL VV LL GA
Sbjct: 34 NGRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 62 NVDSATKKGNTALHIAS 78
+V++ K G T LH+A+
Sbjct: 93 DVNAKDKNGRTPLHLAA 109
Score = 55.4 bits (135), Expect = 1e-09
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
G T AAR GHL+ +++ L + D+N + NG LHLA+++GHL VV LL GA
Sbjct: 68 GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 124 bits (313), Expect = 7e-33
Identities = 46/213 (21%), Positives = 73/213 (34%), Gaps = 22/213 (10%)
Query: 198 YLIKNEHNPDVTSKSGFTP---LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVAS 254
+++ +P ++ P L A+ G V + + D + + G+T LH A
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62
Query: 255 FMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDAR-AREGH 313
+IV +L+ AN + P G TPLH AA N T I L+++GA + A +G
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122
Query: 314 TALSIAQKL--GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTET 371
TA GY A + AL S + E
Sbjct: 123 TAFEKCDPYREGYADCAT-YLADVEQSMGLMNSGAVYALWDY----------SAEFGDEL 171
Query: 372 LIIAKGDG----EKHKNGLTPLHLCAQEDRVGV 400
+G+ + T A + G
Sbjct: 172 SFR-EGESVTVLRRDGPEETDWWWAALHGQEGY 203
Score = 113 bits (285), Expect = 6e-29
Identities = 45/298 (15%), Positives = 71/298 (23%), Gaps = 91/298 (30%)
Query: 24 LKNNVDINTAN---ANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG 80
L+ A N L L A+ G L VV + + + ++G TALH A
Sbjct: 5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI-- 62
Query: 81 EFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQG 136
+ +V L+ ++ G+TPL
Sbjct: 63 ------------------------CGANYSIVDFLITAGANVNSPDSHGWTPL------- 91
Query: 137 HDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATG 196
H AA +DT L++ +
Sbjct: 92 ----------------------HCAASCNDTVICMALVQHGAAIF--------------- 114
Query: 197 GYLIKNEHNPDVTSKSGFTPLHIASHY--GNEGVANILLDKRADVNFSAKSGLTPLHVAS 254
T G T Y G A L D + + L S
Sbjct: 115 ----------ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164
Query: 255 FMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDII-RILLRNGAQVDARARE 311
+ + + ET AA Q + R +V + +
Sbjct: 165 -AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSK 221
Score = 111 bits (279), Expect = 4e-28
Identities = 44/263 (16%), Positives = 72/263 (27%), Gaps = 71/263 (26%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
L AA G L+ +++ K D + N G+ ALH A + +V L++ GAN
Sbjct: 21 PLVLLLDAALTGELE-VVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN 79
Query: 63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE----- 117
V+S G T LH A+ + L++
Sbjct: 80 VNSPDSHGWTPLHCAA--------------------------SCNDTVICMALVQHGAAI 113
Query: 118 NDTRGKDGFTPL--AVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAK 171
T DG T ++G+ L + + AL + +
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF------ 167
Query: 172 LLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK--SGFTPLHIASHYGNEG-V 228
E+ + + V + T A+ +G EG V
Sbjct: 168 -GDEL----------------------SFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Query: 229 ANILLDKRADVNFSAKSGLTPLH 251
V H
Sbjct: 205 PRNYFGLFPRVKPQRSKVKHHHH 227
Score = 83.5 bits (207), Expect = 2e-18
Identities = 33/224 (14%), Positives = 60/224 (26%), Gaps = 65/224 (29%)
Query: 262 VIYLLQNDANPDIPT---VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSI 318
+ +L+ +P + L AA + ++++ ++ EG TAL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 319 AQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD 378
A + + + LI A +
Sbjct: 61 A-----------------------ICGAN------------------YSIVDFLITAGAN 79
Query: 379 -GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAG 437
+G TPLH A + + L+++ A + T D G
Sbjct: 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD------------------G 121
Query: 438 FTPLHL--SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQK 479
T EG+AD + L + + AL
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA 165
Score = 68.4 bits (168), Expect = 3e-13
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 19/110 (17%)
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
N L L A + V + +K P+ + G T
Sbjct: 16 RARLNPLVLLLDAALTGELEVVQQAVKE-------------------MNDPSQPNEEGIT 56
Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
LH + + + L+ GA+V+ G T L A + +L
Sbjct: 57 ALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106
Score = 68.1 bits (167), Expect = 4e-13
Identities = 20/124 (16%), Positives = 31/124 (25%), Gaps = 11/124 (8%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANAN-GLNALHLAS--KDGHLHVVTELLS 58
G T AA I L ++ I + G A ++G+ T L
Sbjct: 86 HGWTPLHCAASCNDTV-ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144
Query: 59 RGANVDSATKKGNTALHIASLGEFLVPVWL------GDFKQGDGFTPLAVAMQQGHDKVV 112
++ AL S + + G T A G + V
Sbjct: 145 VEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Query: 113 AVLL 116
Sbjct: 205 PRNY 208
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 122 bits (308), Expect = 7e-33
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 26/175 (14%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
L AA+ + L+ N + + SG+TP
Sbjct: 17 KLLEAARAGRDDEVR--------------------------ILMANGADVNAEDASGWTP 50
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
LH+A+ G+ + +LL ADVN +G+TPL +A+ G + IV LL+N A+ +
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
+ G TPLHLAA +I+ +LL+NGA V+A+ + G TA I+ G + E L
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 121 bits (306), Expect = 2e-32
Identities = 60/210 (28%), Positives = 82/210 (39%), Gaps = 47/210 (22%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
+ H D L A+ G + IL+ ADVN SG TPLH+A+F G +
Sbjct: 6 HHHHHGSD-----LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHL 60
Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
IV LL+N A+ + G TPL LAA +I+ +LL+NGA V+A EGHT L +A
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Query: 320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD- 378
GH + E L+ D
Sbjct: 121 -----------------------AMFGH------------------LEIVEVLLKNGADV 139
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNN 408
+ K G T + +AE+L K N
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 115 bits (290), Expect = 3e-30
Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 30/186 (16%)
Query: 118 NDTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLL 173
+ G D L A + G D V +L+ N + LH+AA + +
Sbjct: 7 HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE-- 64
Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
L+KN + + +G TPL +A+ +G+ + +LL
Sbjct: 65 ------------------------VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL 100
Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD 293
ADVN + G TPLH+A+ G + IV LL+N A+ + G+T ++ D
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 IIRILL 299
+ IL
Sbjct: 161 LAEILQ 166
Score = 114 bits (289), Expect = 4e-30
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 27/164 (16%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
L AARAG D + L N D+N +A+G LHLA+ +GHL +V LL GA+
Sbjct: 14 LGKKLLEAARAGRDD-EVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 63 VDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQGH 108
V++ G T L +A+L E L+ K G +G TPL +A GH
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLL-------KNGADVNANDMEGHTPLHLAAMFGH 125
Query: 109 DKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEND 148
++V VLL+N + + K G T +++ G++ + +L + +
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 113 bits (287), Expect = 8e-30
Identities = 47/246 (19%), Positives = 82/246 (33%), Gaps = 86/246 (34%)
Query: 29 DINTAN-ANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVW 87
+ + ++ L A++ G V L++ GA+V++ G T LH+A+
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAA--------- 55
Query: 88 LGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAV 143
GH ++V VLL+N + G TPL
Sbjct: 56 -----------------FNGHLEIVEVLLKNGADVNAVDHAGMTPL-------------- 84
Query: 144 LLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNE 203
+AA + + L+KN
Sbjct: 85 ---------------RLAALFGHLEIVE--------------------------VLLKNG 103
Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI 263
+ + G TPLH+A+ +G+ + +LL ADVN K G T ++ G ++
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 264 YLLQND 269
L + +
Sbjct: 164 ILQKLN 169
Score = 105 bits (265), Expect = 8e-27
Identities = 55/232 (23%), Positives = 82/232 (35%), Gaps = 68/232 (29%)
Query: 229 ANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAAR 288
++ +D+ L A+ G + V L+ N A+ + G TPLHLAA
Sbjct: 4 SHHHHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF 56
Query: 289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHT 348
+I+ +LL+NGA V+A G T L +A GH
Sbjct: 57 NGHLEIVEVLLKNGADVNAVDHAGMTPLRLA-----------------------ALFGH- 92
Query: 349 ALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKN 407
+ E L+ D G TPLHL A + + E+LLKN
Sbjct: 93 -----------------LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 408 NAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
GA NA+ G T +S G+ D++ +L +
Sbjct: 136 -------------------GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 105 bits (264), Expect = 1e-26
Identities = 61/212 (28%), Positives = 82/212 (38%), Gaps = 61/212 (28%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
L AARA + D +RIL+ NGA V+A G T L +A
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA------------------- 54
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
GH + E L+ D G+TPL L A
Sbjct: 55 ----AFNGH------------------LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLL 457
+ + E+LLKN GA NA + G TPLHL+A GH ++ +LL
Sbjct: 93 LEIVEVLLKN-------------------GADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
++GADV+ K G TA I+ G + E L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 120 bits (303), Expect = 9e-33
Identities = 42/110 (38%), Positives = 57/110 (51%)
Query: 207 DVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
SK G TPLH A+ G+ LL K ADVN +K G TPLH+A+ G IV LL
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTAL 316
A+ + + G TP HLA + +I+++L GA V+AR+
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 90.5 bits (226), Expect = 4e-22
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 26/128 (20%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
LH AAK + K L+ + + SK G TP
Sbjct: 12 PLHNAAKNGHAEEVK--------------------------KLLSKGADVNARSKDGNTP 45
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
LH+A+ G+ + +LL K ADVN +K G TP H+A G IV L A+ + +
Sbjct: 46 LHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Query: 277 VRGETPLH 284
H
Sbjct: 106 WGSSHHHH 113
Score = 83.2 bits (207), Expect = 2e-19
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 32/132 (24%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
+G+T AA+ GH + ++ L D+N + +G LHLA+K+GH +V LL++GA
Sbjct: 8 DGNTPLHNAAKNGHAE-EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN--- 118
+V++ +K GNT H+A + GH ++V +L
Sbjct: 67 DVNARSKDGNTPEHLAK--------------------------KNGHHEIVKLLDAKGAD 100
Query: 119 -DTRGKDGFTPL 129
+ R
Sbjct: 101 VNARSWGSSHHH 112
Score = 82.8 bits (206), Expect = 2e-19
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
+K G TPLH A+ G V LL A+ + + G TPLHLAA+ +I++
Sbjct: 2 HMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAAERSQLKKRGREGHTAL 350
+LL GA V+AR+++G+T +A+K G+ + + L GA + R
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA----DVNARSWGSSHHH 112
Score = 77.8 bits (193), Expect = 1e-17
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGA 428
K+G TPLH A+ + LL A V+ +K +I LL GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 429 KPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTAL 474
NA S G TP HL+ GH ++ +L GADV+ +
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 70.1 bits (173), Expect = 7e-15
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
G+T AA+ GH + I++ L D+N + +G HLA K+GH +V L ++GA+
Sbjct: 42 GNTPLHLAAKNGHAE-IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Query: 63 VDSATKKGNTALH 75
V++ + + H
Sbjct: 101 VNARSWGSSHHHH 113
Score = 68.2 bits (168), Expect = 3e-14
Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 61/165 (36%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
G TPLH AA+ + ++ LL GA V+AR+++G+T L +A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA------------------- 49
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDR 397
+ GH + + L+ D + K+G TP HL +
Sbjct: 50 ----AKNGH------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87
Query: 398 VGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
+ +LL GA NA S H
Sbjct: 88 HEIVKLLDAK-------------------GADVNARSWGSSHHHH 113
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 121 bits (307), Expect = 9e-33
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 45/196 (22%)
Query: 213 GFTPLHIASHYGN-EGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
L A+ G+ + V +L + + + G T L V F G I + LL+ A+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
P++ G +P+H AAR D +++L+ +GA V+ G + +A
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA------------ 108
Query: 332 GAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLH 390
+EGH V + A+ D + GLTPL
Sbjct: 109 -----------VQEGH------------------TAVVS-FLAAESDLHRRDARGLTPLE 138
Query: 391 LCAQEDRVGVAELLLK 406
L Q + ++L
Sbjct: 139 LALQRGAQDLVDILQG 154
Score = 120 bits (305), Expect = 2e-32
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
L AA + D + + LL + +PD ++ G T
Sbjct: 5 RLSGAAARGDVQEVRRLL-------------------------HRELVHPDALNRFGKTA 39
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
L + +G+ +A LL + A N SG +P+H A+ G ++ + L+++ A+ ++P
Sbjct: 40 LQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98
Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
G P+HLA + T ++ L + + R G T L +A + G + + L
Sbjct: 99 GTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 112 bits (282), Expect = 3e-29
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 26/161 (16%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
AA G + ++ L + V + N G AL + G + ELL +GA+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 63 VDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQGH 108
+ G + +H A+ + LV + G G P+ +A+Q+GH
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLV-------EHGADVNVPDGTGALPIHLAVQEGH 113
Query: 109 DKVVAVLLEN---DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
VV+ L R G TPL +A+Q+G +V +L
Sbjct: 114 TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 104 bits (261), Expect = 2e-26
Identities = 39/235 (16%), Positives = 69/235 (29%), Gaps = 88/235 (37%)
Query: 37 GLNALHLASKDGHLHVVTELL-SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
+ L A+ G + V LL + D+ + G TAL +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM----------------- 44
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRG 151
G + LL+ + + G +P+
Sbjct: 45 ----------FGSTAIALELLKQGASPNVQDTSGTSPV---------------------- 72
Query: 152 KVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK 211
H AA+ K L+++ + +V
Sbjct: 73 -------HDAARTGFLDTLK--------------------------VLVEHGADVNVPDG 99
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLL 266
+G P+H+A G+ V + L +D++ GLTPL +A G ++V L
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 104 bits (261), Expect = 2e-26
Identities = 43/214 (20%), Positives = 67/214 (31%), Gaps = 64/214 (29%)
Query: 278 RGETPLHLAARANQTDIIRILL-RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAER 336
R L AA +R LL R DA R G TAL +
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM---------------- 44
Query: 337 SQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQE 395
G TA + L+ + +G +P+H A+
Sbjct: 45 --------FGSTA------------------IALELLKQGASPNVQDTSGTSPVHDAART 78
Query: 396 DRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM 455
+ ++L+ E+GA N G P+HL+ EGH + +
Sbjct: 79 GFLDTLKVLV-------------------EHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 456 LLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
L +D+ G T L +A + G + + L
Sbjct: 120 LAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 100 bits (253), Expect = 2e-25
Identities = 40/216 (18%), Positives = 59/216 (27%), Gaps = 64/216 (29%)
Query: 246 GLTPLHVASFMGCMNIVIYLL-QNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
L A+ G + V LL + +PD G+T L + T I LL+ GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEES 364
+ + G + + A R G
Sbjct: 61 PNVQDTSGTSPVHDA-----------------------ARTGF----------------- 80
Query: 365 LKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTL 423
+ L+ D G P+HL QE V L
Sbjct: 81 -LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA----------------- 122
Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEH 459
+ + G TPL L+ G D+ +L H
Sbjct: 123 ---ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 119 bits (300), Expect = 4e-32
Identities = 39/123 (31%), Positives = 57/123 (46%)
Query: 209 TSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQN 268
T+ G T LHIAS G+ LL +D N +G TPLH A G + +V LLQ+
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
A + + ++PLH AA+ DI+++LL GA +A G + S+
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
Query: 329 ESL 331
Sbjct: 126 LLP 128
Score = 116 bits (294), Expect = 3e-31
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
LHIA+ K D + + YL++N +P+V +G+TP
Sbjct: 13 LLHIASIKGDIPSVE--------------------------YLLQNGSDPNVKDHAGWTP 46
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
LH A ++G+ V +LL +A VN + +PLH A+ G ++IV LL A+ +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 277 VRGETPLHLAARANQTDIIRILLRNGA 303
+ G P+ + ++ + +N +
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEKNES 133
Score = 101 bits (254), Expect = 1e-25
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 26/139 (18%)
Query: 28 VDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG------E 81
+D T N G LH+AS G + V LL G++ + G T LH A E
Sbjct: 2 IDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 82 FLVPVWLGDFKQG--------DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPL 129
L+ + +PL A + GH +V +LL + G P+
Sbjct: 61 LLL-------QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Query: 130 AVAMQQGHDKVVAVLLEND 148
+ ++ + +N+
Sbjct: 114 DYTDDESMKSLLLLPEKNE 132
Score = 90.2 bits (225), Expect = 8e-22
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 30/153 (19%)
Query: 123 KDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSC 178
G T L +A +G V LL+N + + LH A K +
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE------- 60
Query: 179 TVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRAD 238
L++++ + T +PLH A+ G+ + +LL A
Sbjct: 61 -------------------LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Query: 239 VNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
N GL P+ ++++ +N+++
Sbjct: 102 RNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 89.8 bits (224), Expect = 1e-21
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 14/126 (11%)
Query: 378 DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKM--------------DIATTL 423
D + G T LH+ + + + E LL+N + + + L
Sbjct: 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 424 LEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYI 483
L++ A N +PLH +A GH D+ +LL +GA + G +
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122
Query: 484 SVEESL 489
S+
Sbjct: 123 SLLLLP 128
Score = 85.6 bits (213), Expect = 4e-20
Identities = 40/188 (21%), Positives = 58/188 (30%), Gaps = 62/188 (32%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERS 337
RGET LH+A+ + LL+NG+ + + G T L A
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA------------------ 50
Query: 338 QLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQED 396
GH V E L+ K +PLH A+
Sbjct: 51 -----CNHGH------------------LKVVELLLQHKALVNTTGYQNDSPLHDAAKNG 87
Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAML 456
V + +LLL YGA NA ++ G P+ + E + +L
Sbjct: 88 HVDIVKLLL-------------------SYGASRNAVNIFGLRPVDYTDDESMKSL-LLL 127
Query: 457 LEHGADVS 464
E S
Sbjct: 128 PEKNESSS 135
Score = 76.7 bits (190), Expect = 6e-17
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
G T A GHL ++E L ++ +NT + LH A+K+GH+ +V LLS GA+
Sbjct: 43 GWTPLHEACNHGHLK-VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Query: 63 VDSATKKGNTALHIAS 78
++ G +
Sbjct: 102 RNAVNIFGLRPVDYTD 117
Score = 49.3 bits (119), Expect = 2e-07
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
+ + AA+ GH+D I++ L N N GL + + ++ L +
Sbjct: 75 QNDSPLHDAAKNGHVD-IVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL-LLPEKNE 132
Query: 62 NVDSA 66
+ ++
Sbjct: 133 SSSAS 137
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 120 bits (303), Expect = 3e-31
Identities = 54/296 (18%), Positives = 87/296 (29%), Gaps = 77/296 (26%)
Query: 39 NALHLASKDGHLHVVTELL--------SRGANVDSATKKGNTALHIASLGEFLVPVWLGD 90
+ L G +T LL + + G T L A
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA------------- 50
Query: 91 FKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTR 150
+ +Q G + + LL+ V A + +
Sbjct: 51 ----------VLNLQDGVNACIMPLLQI-----------DKDSGNPKPLVNAQCTDEFYQ 89
Query: 151 GKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTS 210
G ALHIA +K + KLL+E V + G + +
Sbjct: 90 GHS---ALHIAIEKRSLQCVKLLVENGADV-----------HLRACGRFFQ--KHQGTCF 133
Query: 211 KSGFTPLHIASHYGNEGVANILLDK---RADVNFSAKSGLTPLH---------------- 251
G PL +A+ V LL+ A + + G T LH
Sbjct: 134 YFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALV 193
Query: 252 VASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDA 307
+ + G + + L +I +G TPL LAA+ + +I R +L+ A
Sbjct: 194 IHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249
Score = 116 bits (292), Expect = 1e-29
Identities = 55/346 (15%), Positives = 85/346 (24%), Gaps = 124/346 (35%)
Query: 156 PALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFT 215
L + + LLE YL + + +G T
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLR---------------WNSKYLTDSAYTEG---STGKT 45
Query: 216 PLHIA---SHYGNEGVANILLDKR-----------ADVNFSAKSGLTPLHVASFMGCMNI 261
L A G LL A G + LH+A +
Sbjct: 46 CLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQC 105
Query: 262 VIYLLQNDANPDI-------------PTVRGETPLHLAARANQTDIIRILLRNG---AQV 305
V L++N A+ + GE PL LAA Q D++ LL N A +
Sbjct: 106 VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165
Query: 306 DARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESL 365
+A G+T L H + IA
Sbjct: 166 EATDSLGNTVL------------------------------HALVMIADN---------- 185
Query: 366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLE 425
+ L + + + + L +
Sbjct: 186 -----------------SPENSALVIHMYDGLLQMGARLCPTVQLEEISNH--------- 219
Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471
G TPL L+A EG ++ +L+ + A H
Sbjct: 220 ----------QGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 89.5 bits (222), Expect = 3e-20
Identities = 48/261 (18%), Positives = 76/261 (29%), Gaps = 43/261 (16%)
Query: 248 TPLHVASFMGCMNIVIYLLQ--------NDANPDIPTVRGETPLHLAA---RANQTDIIR 296
L G + LL+ + G+T L A + I
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKL 356
LL+ + + A Q +GH+AL IA +
Sbjct: 64 PLLQIDKDSGN-------------------PKPLVNA----QCTDEFYQGHSALHIAIEK 100
Query: 357 GYISVEESL--KG-----VTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNA 409
+ + L G K G G PL L A + V LL+N
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160
Query: 410 QV-DTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAK 468
Q + T+L + A++ + L + +G M A L +
Sbjct: 161 QPASLEATDSLGNTVL-HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219
Query: 469 EGHTALSIAQKLGYISVEESL 489
+G T L +A K G I + +
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHI 240
Score = 62.5 bits (152), Expect = 4e-11
Identities = 13/69 (18%), Positives = 26/69 (37%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
+++ + G L +N GL L LA+K+G + + +L R +
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Query: 63 VDSATKKGN 71
+A +
Sbjct: 247 GAAAHHHHH 255
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 116 bits (292), Expect = 5e-31
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 204 HNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVI 263
+ S L A+ G LL+ AD N + G P+ V MG +
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAE 61
Query: 264 YLLQNDANPDIPTVRGET-PLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKL 322
LL + A P+ T P+H AAR D + +L R GA++D G + +A++
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121
Query: 323 GYISVEESL 331
G+ + L
Sbjct: 122 GHRDIARYL 130
Score = 103 bits (260), Expect = 1e-26
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 25/137 (18%)
Query: 29 DINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG-----EFL 83
I+ + L A+ G + V +LL GA+ ++ + G + + +G E L
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELL 63
Query: 84 VPVWLGDFKQG--------DGFT-PLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLA 130
+ G T P+ A ++G + VL D G P+
Sbjct: 64 L-------LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVD 116
Query: 131 VAMQQGHDKVVAVLLEN 147
+A +QGH + L
Sbjct: 117 LAEEQGHRDIARYLHAA 133
Score = 102 bits (257), Expect = 4e-26
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLT-PLHVASFM 256
L++ +P+ ++ G P+ + G+ VA +LL A+ N + + LT P+H A+
Sbjct: 30 QLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAARE 88
Query: 257 GCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
G ++ ++ L + A D+ G P+ LA DI R L
Sbjct: 89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 93.3 bits (233), Expect = 7e-23
Identities = 27/175 (15%), Positives = 46/175 (26%), Gaps = 44/175 (25%)
Query: 237 ADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIR 296
++ S L A+ G + V LL+ A+P+ G P+ + +
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAE 61
Query: 297 ILLRNGAQVDARAREGHT-ALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQK 355
+LL +GA+ + T + A REG
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDA-----------------------AREGF-------- 90
Query: 356 LGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNA 409
L A G P+ L ++ +A L
Sbjct: 91 ----------LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 92.9 bits (232), Expect = 1e-22
Identities = 33/195 (16%), Positives = 55/195 (28%), Gaps = 63/195 (32%)
Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
+ + L AA Q + +R LL GA +A R G + +
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-------- 54
Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLT- 387
G V E L++ + LT
Sbjct: 55 ----------------GSAQ------------------VAELLLLHGAEPNCADPATLTR 80
Query: 388 PLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASE 447
P+H A+E + +L + GA+ + G P+ L+ +
Sbjct: 81 PVHDAAREGFLDTLVVLHRA-------------------GARLDVCDAWGRLPVDLAEEQ 121
Query: 448 GHADMSAMLLEHGAD 462
GH D++ L D
Sbjct: 122 GHRDIARYLHAATGD 136
Score = 91.0 bits (227), Expect = 5e-22
Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 32/158 (20%)
Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLL 174
G LA A +G + V LLE + + + +
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM----------- 54
Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFT-PLHIASHYGNEGVANILL 233
G+A L+ + P+ + T P+H A+ G +L
Sbjct: 55 ----------------GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98
Query: 234 DKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
A ++ G P+ +A G +I YL +
Sbjct: 99 RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 84.8 bits (211), Expect = 7e-20
Identities = 31/190 (16%), Positives = 50/190 (26%), Gaps = 66/190 (34%)
Query: 60 GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN- 118
+ + L A+ +G + V LLE
Sbjct: 2 SPGIHMLGGSSDAGLATAA--------------------------ARGQVETVRQLLEAG 35
Query: 119 ---DTRGKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTK 168
+ + G P+ V M G +V +LL + D +H AA++
Sbjct: 36 ADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLT--RPVHDAARE---- 88
Query: 169 AAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGV 228
G T L + DV G P+ +A G+ +
Sbjct: 89 ----------------------GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 229 ANILLDKRAD 238
A L D
Sbjct: 127 ARYLHAATGD 136
Score = 58.2 bits (142), Expect = 2e-10
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 427 GAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
+ + L +A+ G + LLE GAD + + G + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM 52
Score = 55.9 bits (136), Expect = 8e-10
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 3 EGHTSFL-RAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
T + AAR G LD + L + ++ +A G + LA + GH + L +
Sbjct: 76 ATLTRPVHDAAREGFLD-TLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
Query: 61 AN 62
+
Sbjct: 135 GD 136
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 115 bits (292), Expect = 1e-30
Identities = 48/203 (23%), Positives = 65/203 (32%), Gaps = 46/203 (22%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
++ L A+ G+ LL +VN G T L V G I LL
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60
Query: 270 ANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEE 329
ANPD+ G +H AARA D ++ LL A V+ EG+ L +A
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA---------- 110
Query: 330 SLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG---EKHKNGL 386
+EGH V E L + ++ G
Sbjct: 111 -------------AKEGH------------------LRVVEFL-VKHTASNVGHRNHKGD 138
Query: 387 TPLHLCAQEDRVGVAELLLKNNA 409
T L R V L+ N A
Sbjct: 139 TACDLARLYGRNEVVSLMQANGA 161
Score = 114 bits (287), Expect = 7e-30
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 31/182 (17%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
L AA + D + L++N N + + G T
Sbjct: 8 ELASAAARGDLEQLT--------------------------SLLQNNVNVNAQNGFGRTA 41
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
L + GN +A LL + A+ + ++G +H A+ G ++ + LL+ A+ +I
Sbjct: 42 LQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100
Query: 277 VRGETPLHLAARANQTDIIRILLRNGAQ-VDARAREGHTALSIAQKLGYISVEESL---G 332
G PLHLAA+ ++ L+++ A V R +G TA +A+ G V + G
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Query: 333 AA 334
A
Sbjct: 161 AG 162
Score = 102 bits (258), Expect = 7e-26
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 29/165 (17%)
Query: 3 EGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
AA G L+ + L +NNV++N N G AL + G+ + LL RGA
Sbjct: 4 PWGNELASAAARGDLE-QLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 62 NVDSATKKGNTALHIASLG------EFLVPVWLGDFKQG--------DGFTPLAVAMQQG 107
N D + G +H A+ + L+ + +G PL +A ++G
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLL-------EFQADVNIEDNEGNLPLHLAAKEG 114
Query: 108 HDKVVAVLLEN-----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
H +VV L+++ R G T +A G ++VV+++ N
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 102 bits (256), Expect = 1e-25
Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 60/210 (28%)
Query: 36 NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
N L A+ G L +T LL NV++ G TAL +
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK----------------- 46
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN---- 147
G+ ++ LL D + + GF + A + G + LLE
Sbjct: 47 ----------LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 148 DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPD 207
+ LH+AAK+ + + L++ N
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVK-------------------------HTASNVG 131
Query: 208 VTSKSGFTPLHIASHYGNEGVANILLDKRA 237
+ G T +A YG V +++ A
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 100 bits (252), Expect = 4e-25
Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 34/188 (18%)
Query: 278 RGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL---GAA 334
L AA + + LL+N V+A+ G TAL + + G + L GA
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA- 61
Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCA 393
+ R G + A + G+ +TL+ + D + G PLHL A
Sbjct: 62 ---NPDLKDRTGFAVIHDAARAGF-------LDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 394 QEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
+E + V E L+K+ A ++ + G T L+ G ++
Sbjct: 112 KEGHLRVVEFLVKHTAS-------NV-----------GHRNHKGDTACDLARLYGRNEVV 153
Query: 454 AMLLEHGA 461
+++ +GA
Sbjct: 154 SLMQANGA 161
Score = 89.7 bits (224), Expect = 3e-21
Identities = 36/216 (16%), Positives = 65/216 (30%), Gaps = 68/216 (31%)
Query: 67 TKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRG 122
+ L A+ +G + + LL+N + +
Sbjct: 2 AEPWGNELASAA--------------------------ARGDLEQLTSLLQNNVNVNAQN 35
Query: 123 KDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKAAKLLLE 175
G T L V + G+ ++ LL D G +H AA+ +
Sbjct: 36 GFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFA---VIHDAARAGFLDTLQ---- 87
Query: 176 VSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDK 235
L++ + + ++ G PLH+A+ G+ V L+
Sbjct: 88 ----------------------TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 236 RA-DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270
A +V G T +A G +V + N A
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 77.8 bits (193), Expect = 4e-17
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 13/119 (10%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK-------------MDIATTLLEYGAKP 430
L A + LL+NN V+ +IA LL GA P
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANP 63
Query: 431 NAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+ + GF +H +A G D LLE ADV+ EG+ L +A K G++ V E L
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Score = 49.3 bits (119), Expect = 3e-07
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNN--VDINTANANGLNALHLASKDGHLHVVTELLSRG 60
EG+ AA+ GHL ++E L + ++ N G A LA G VV+ + + G
Sbjct: 102 EGNLPLHLAAKEGHLR-VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Query: 61 A 61
A
Sbjct: 161 A 161
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 114 bits (287), Expect = 2e-30
Identities = 28/117 (23%), Positives = 45/117 (38%)
Query: 211 KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDA 270
A G+ + K DVN + + G PLH A+ G + I+ +LL A
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 271 NPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISV 327
+ + P TPL A +++LL GA + +G TA ++
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 99.4 bits (249), Expect = 4e-25
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 25/126 (19%)
Query: 34 NANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLG------EFLVPVW 87
+ A K+G L V + +++G +V+ + G LH A+ EFL+
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL--- 60
Query: 88 LGDFKQG--------DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQ 135
+G TPL A+ +GH V +LL +G DG T Q
Sbjct: 61 ----LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116
Query: 136 GHDKVV 141
++
Sbjct: 117 AIKALL 122
Score = 98.6 bits (247), Expect = 7e-25
Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 26/140 (18%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
A K D K + + + T + G P
Sbjct: 10 EFMWALKNGDLDEVK--------------------------DYVAKGEDVNRTLEGGRKP 43
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
LH A+ G + LL K AD+N K +TPL A + G ++ V LL A+ +
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Query: 277 VRGETPLHLAARANQTDIIR 296
G T +++
Sbjct: 104 PDGLTAFEATDNQAIKALLQ 123
Score = 81.7 bits (203), Expect = 6e-19
Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 14/121 (11%)
Query: 379 GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLL 424
G + + + + V+ + ++I LL
Sbjct: 1 GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60
Query: 425 EYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYIS 484
GA NA TPL + EGH +LL GAD + +G TA +
Sbjct: 61 LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120
Query: 485 V 485
+
Sbjct: 121 L 121
Score = 79.4 bits (197), Expect = 4e-18
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 30/145 (20%)
Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVS 177
G A++ G V + + + LH AA + +
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE------ 57
Query: 178 CTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRA 237
+L+ + + K TPL A + G+ +LL K A
Sbjct: 58 --------------------FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIV 262
D GLT ++
Sbjct: 98 DKTVKGPDGLTAFEATDNQAIKALL 122
Score = 76.7 bits (190), Expect = 4e-17
Identities = 30/162 (18%), Positives = 46/162 (28%), Gaps = 45/162 (27%)
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
A G ++ V + + + G PLH AA Q +I+ LL GA
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 304 QVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEE 363
++A + T L A EGH +
Sbjct: 65 DINAPDKHHITPLLSA-----------------------VYEGHVS-------------- 87
Query: 364 SLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELL 404
+ L+ D K +GLT + + LL
Sbjct: 88 ----CVKLLLSKGADKTVKGPDGLTAFEATDNQ---AIKALL 122
Score = 76.3 bits (189), Expect = 5e-17
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
G AA G L+ I+E L DIN + + + L A +GH+ V LLS+GA+
Sbjct: 40 GRKPLHYAADCGQLE-ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 63 VDSATKKGNTALHIAS 78
G TA
Sbjct: 99 KTVKGPDGLTAFEATD 114
Score = 66.3 bits (163), Expect = 2e-13
Identities = 18/138 (13%), Positives = 32/138 (23%), Gaps = 34/138 (24%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN--- 147
A++ G V + + + G PL A G +++ LL
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 148 -DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNP 206
+ K + L A + K L+ +
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVK--------------------------LLLSKGADK 99
Query: 207 DVTSKSGFTPLHIASHYG 224
V G T +
Sbjct: 100 TVKGPDGLTAFEATDNQA 117
Score = 45.5 bits (109), Expect = 3e-06
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVV 53
T L A GH+ ++ L D +GL A ++
Sbjct: 73 HITPLLSAVYEGHVS-CVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 117 bits (296), Expect = 3e-30
Identities = 50/291 (17%), Positives = 80/291 (27%), Gaps = 72/291 (24%)
Query: 215 TPLHIASHYGN----EGVANILLDKRADVN----FSAKSGLTPLHVASFM---GCMNIVI 263
L G+ EG+ + LL + + +G T L A G + +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 264 YLLQNDANPDIPTV-----------RGETPLHLAARANQTDIIRILLRNGAQVDARAREG 312
LL RG+T LH+A + +L+ GA V A+AR
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 313 HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372
Y G LS+A + L
Sbjct: 127 FFQPKDEGGYFY--------------------FGELPLSLAACTNQPHIVHYL------- 159
Query: 373 IIAKGDG-----EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYG 427
G + G T LH +N + +T + LL
Sbjct: 160 -TENGHKQADLRRQDSRGNTVLHALVAI----------ADNTRENTKFVTKMYDLLLIKC 208
Query: 428 AKPNAESVA-------GFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGH 471
AK ++ G +PL ++A G + ++ + A H
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 112 bits (283), Expect = 2e-28
Identities = 48/299 (16%), Positives = 92/299 (30%), Gaps = 72/299 (24%)
Query: 38 LNALHLASKDGHLHVVTELLSRGANVDS----ATKKGNTALHIASLGEFLVPVWLGDFKQ 93
+ + S DG +++ LL+ + G T L A
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA---------------- 53
Query: 94 GDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKV 153
+ + G + + +LL+ + + + + + + RG+
Sbjct: 54 -------LLNLSAGRNDTIPILLDIAEKTGN-----------MREFINSPFRDVYYRGQT 95
Query: 154 RLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSG 213
ALHIA ++ +LL+E V +A G + + G
Sbjct: 96 ---ALHIAIERRCKHYVELLVEKGADV-----------HAQARGRFFQP-KDEGGYFYFG 140
Query: 214 FTPLHIASHYGNEGVANILLDK---RADVNFSAKSGLTPLHVASFMG---------CMNI 261
PL +A+ + + L + +AD+ G T LH + +
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200
Query: 262 VIYLLQNDAN-------PDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGH 313
LL A + G +PL +AA+ + I + ++R A H
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 102 bits (256), Expect = 8e-25
Identities = 49/302 (16%), Positives = 91/302 (30%), Gaps = 72/302 (23%)
Query: 126 FTPLAVAMQQGHDKVVAVLLEN--------DTRGKVRLPALHIAA---KKDDTKAAKLLL 174
F ++ G + +++ LL + L A +LL
Sbjct: 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69
Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
+++ ++ G T LHIA + +L++
Sbjct: 70 DIAEKTGNMREFINSPFRDVY---------------YRGQTALHIAIERRCKHYVELLVE 114
Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDI 294
K ADV+ A+ + GE PL LAA NQ I
Sbjct: 115 KGADVHAQARGRFFQPK-------------------DEGGYFYFGELPLSLAACTNQPHI 155
Query: 295 IRILLRNG---AQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALS 351
+ L NG A + + G+T L + + E + + L
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM---------YDLLLI 206
Query: 352 IAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQV 411
KL + E+L + +GL+PL + A+ ++G+ + +++
Sbjct: 207 KCAKLFPDTNLEAL---------------LNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251
Query: 412 DT 413
Sbjct: 252 AA 253
Score = 89.5 bits (222), Expect = 3e-20
Identities = 43/258 (16%), Positives = 72/258 (27%), Gaps = 72/258 (27%)
Query: 4 GHTSFLRAA---RAGHLDKI---IEHLKN--------NVDINTANANGLNALHLASKDGH 49
G T +A AG D I ++ + N G ALH+A +
Sbjct: 46 GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105
Query: 50 LHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHD 109
H V L+ +GA+V + + + G PL++A
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFY------------FGELPLSLAACTNQP 153
Query: 110 KVVAVLLEN-------DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAA 162
+V L EN + G T L + +
Sbjct: 154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN--------------------TREN 193
Query: 163 KKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASH 222
K TK LLL L + + + + G +PL +A+
Sbjct: 194 TKFVTKMYDLLLIK-------------------CAKLFPDTNLEALLNNDGLSPLMMAAK 234
Query: 223 YGNEGVANILLDKRADVN 240
G G+ ++ +
Sbjct: 235 TGKIGIFQHIIRREIADA 252
Score = 79.1 bits (195), Expect = 1e-16
Identities = 51/277 (18%), Positives = 81/277 (29%), Gaps = 74/277 (26%)
Query: 248 TPLHVASFMGCMN----IVIYLLQNDANPDIPTVR----GETPLHLAA---RANQTDIIR 296
L G + ++ +LL + R G+T L A A + D I
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 297 ILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKL 356
ILL + ++ E + + R + G TAL IA +
Sbjct: 67 ILLDIAEKTG-------------------NMREFINSPFRDVYYR----GQTALHIAIER 103
Query: 357 GYISVEESL--KGV------TETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNN 408
E L KG K +G G PL L A ++ + L +N
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163
Query: 409 AQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH---------ADMSAMLLEH 459
+ A + G T LH + M +LL
Sbjct: 164 HK----------------QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK 207
Query: 460 GADVSHAA-------KEGHTALSIAQKLGYISVEESL 489
A + +G + L +A K G I + + +
Sbjct: 208 CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244
Score = 42.8 bits (101), Expect = 1e-04
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 16 HLDKIIEHLKN----NVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKKGN 71
D ++ N +GL+ L +A+K G + + ++ R +A +
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 111 bits (279), Expect = 1e-28
Identities = 26/205 (12%), Positives = 58/205 (28%), Gaps = 38/205 (18%)
Query: 120 TRGKDGFTPLAVAMQQGHDKVVAVLLEN---DTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
+ + ++ A G + L E D ++ L+ + ++ +A +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM- 59
Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVAN------ 230
+LI + +K G T G +
Sbjct: 60 ---------------------FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK 98
Query: 231 ILLDKRADVNFSAKSGLTPLHVASFMGCMNIV-------IYLLQNDANPDIPTVRGETPL 283
I L+K AD+ K + F ++ + Q+ I G T L
Sbjct: 99 IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158
Query: 284 HLAARANQTDIIRILLRNGAQVDAR 308
R + ++++ + + +
Sbjct: 159 EFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 100 bits (250), Expect = 1e-24
Identities = 28/214 (13%), Positives = 57/214 (26%), Gaps = 46/214 (21%)
Query: 210 SKSGFTPLHIASHYGNEGVANILLDKRADVNFSA---KSGLTPLHVASFMGCMNIVIYLL 266
+ S + + A+ G L +K + S L + I ++L+
Sbjct: 3 AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62
Query: 267 QNDANPDIPTVRGETPLHLAARANQTDI------IRILLRNGAQVDARAREGHTALSIAQ 320
A+ T G T + DI +I L GA + A + +
Sbjct: 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122
Query: 321 KLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG- 379
++ E + + + + G
Sbjct: 123 FNYFVDENE-----------------------------------MIPLYKLIFSQSGLQL 147
Query: 380 -EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVD 412
K K GLT L + + +++ + +
Sbjct: 148 LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Score = 94.7 bits (236), Expect = 9e-23
Identities = 26/226 (11%), Positives = 54/226 (23%), Gaps = 53/226 (23%)
Query: 243 AKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR---GETPLHLAARANQTDIIRILL 299
A S + A+ +G + L + ++ L + I L+
Sbjct: 3 AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62
Query: 300 RNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI 359
GA + +R +EG T + G + + +
Sbjct: 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK------------------------ 98
Query: 360 SVEESLKGVTETLIIAKG-D-GEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKM 417
+ + KG D +K + V E++
Sbjct: 99 ------------IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL----------- 135
Query: 418 DIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADV 463
+ G + + G T L M+ ++
Sbjct: 136 -YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180
Score = 93.6 bits (233), Expect = 2e-22
Identities = 24/251 (9%), Positives = 53/251 (21%), Gaps = 87/251 (34%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANAN---GLNALHLASKDGHLHVVTELLSR 59
+ + AA G + +E + + + + L + + + L+++
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 60 GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVA------ 113
GA++ S TK+G T Q G + +
Sbjct: 65 GADIKSRTKEGTTLFFPLF--------------------------QGGGNDITGTTELCK 98
Query: 114 VLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKA 169
+ LE K +
Sbjct: 99 IFLEKGADITALYKPYKIV-----------------------------VFKNIFNYFVDE 129
Query: 170 AKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVA 229
+++ ++ + K G T L
Sbjct: 130 NEMIPLYKL-------------------IFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170
Query: 230 NILLDKRADVN 240
++ D N
Sbjct: 171 KMMEDYIKKYN 181
Score = 86.7 bits (215), Expect = 6e-20
Identities = 27/220 (12%), Positives = 48/220 (21%), Gaps = 61/220 (27%)
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
+ AA + L G + + + +
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNI---------------------- 41
Query: 339 LKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKG-D-GEKHKNGLTPLHLCAQED 396
+ L + L I KG D + K G T Q
Sbjct: 42 -------LYDVLRNNNDEARYKISMFL--------INKGADIKSRTKEGTTLFFPLFQGG 86
Query: 397 RVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM- 455
+ ++ LE GA A + + D + M
Sbjct: 87 GNDITGTT-------------ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI 133
Query: 456 ------LLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+ G + K G TAL ++ + +
Sbjct: 134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173
Score = 73.6 bits (181), Expect = 2e-15
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 29/164 (17%)
Query: 344 REGHTALSIAQKLGYISVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAEL 403
+ +S A LG L KG +K + +
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLEL--------FEKGYEDKESVLKSNILYDV---------- 45
Query: 404 LLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAM------LL 457
L+NN + I+ L+ GA + + G T G D++ L
Sbjct: 46 -LRNNND---EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101
Query: 458 EHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLIIAKG 501
E GAD++ K + ++ E + + + + G
Sbjct: 102 EKGADITALYKPYKIVVFKNIFNYFVDENE-MIPLYKLIFSQSG 144
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 105 bits (264), Expect = 4e-27
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 200 IKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM 259
+ H D L A+ G + IL+ ADVN + GLTPL++A+ G +
Sbjct: 6 HHHHHGSD-----LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHL 60
Query: 260 NIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
IV LL+N A+ + G TPLHLAA +I +LL++GA V+A+ + G TA I+
Sbjct: 61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 320 QKLGYISVEESL 331
G + E L
Sbjct: 121 IGNGNEDLAEIL 132
Score = 92.8 bits (232), Expect = 9e-23
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 26/143 (18%)
Query: 157 ALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTP 216
L AA+ + L+ N + + + G TP
Sbjct: 17 KLLEAARAGQDDEVR--------------------------ILMANGADVNAKDEYGLTP 50
Query: 217 LHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPT 276
L++A+ +G+ + +LL ADVN G TPLH+A+F+G + I LL++ A+ +
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Query: 277 VRGETPLHLAARANQTDIIRILL 299
G+T ++ D+ IL
Sbjct: 111 KFGKTAFDISIGNGNEDLAEILQ 133
Score = 88.6 bits (221), Expect = 4e-21
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 32/150 (21%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
L AARAG D + L N D+N + GL L+LA+ GHL +V LL GA+
Sbjct: 14 LGKKLLEAARAGQDD-EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN---- 118
V++ G T LH+A+ GH ++ VLL++
Sbjct: 73 VNAVDAIGFTPLHLAA--------------------------FIGHLEIAEVLLKHGADV 106
Query: 119 DTRGKDGFTPLAVAMQQGHDKVVAVLLEND 148
+ + K G T +++ G++ + +L + +
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 83.2 bits (207), Expect = 3e-19
Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 49/181 (27%)
Query: 229 ANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAAR 288
++ +D+ L A+ G + V L+ N A+ + G TPL+LA
Sbjct: 4 SHHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56
Query: 289 ANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHT 348
+I+ +LL+NGA V+A G T L +A GH
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLA-----------------------AFIGH- 92
Query: 349 ALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQEDRVGVAELLLKN 407
+ E L+ D + K G T + +AE+L K
Sbjct: 93 -----------------LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Query: 408 N 408
N
Sbjct: 136 N 136
Score = 81.7 bits (203), Expect = 9e-19
Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 36/155 (23%)
Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKAAKLLL 174
G D L A + G D V +L+ N D G L++A + ++L
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLT---PLYLATAHGHLEIVEVL- 66
Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
+KN + + GFTPLH+A+ G+ +A +LL
Sbjct: 67 -------------------------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQND 269
ADVN K G T ++ G ++ L + +
Sbjct: 102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 78.6 bits (195), Expect = 1e-17
Identities = 46/197 (23%), Positives = 68/197 (34%), Gaps = 68/197 (34%)
Query: 264 YLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLG 323
+ + ++ L AARA Q D +RIL+ NGA V+A+ G T L +A
Sbjct: 6 HHHHHGSD-------LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA---- 54
Query: 324 YISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKH 382
GH + E L+ D
Sbjct: 55 -------------------TAHGH------------------LEIVEVLLKNGADVNAVD 77
Query: 383 KNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLH 442
G TPLHL A + +AE+LLK+ GA NA+ G T
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKH-------------------GADVNAQDKFGKTAFD 118
Query: 443 LSASEGHADMSAMLLEH 459
+S G+ D++ +L +
Sbjct: 119 ISIGNGNEDLAEILQKL 135
Score = 75.5 bits (187), Expect = 1e-16
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTK--------------MDIATTLLEYGAK 429
+ L A+ + +L+ N A V+ + ++I LL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 430 PNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
NA GFTPLHL+A GH +++ +LL+HGADV+ K G TA I+ G + E L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 102 bits (257), Expect = 1e-26
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 212 SGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+G TPLH+A+ G+ V +LL+ ADVN K+G TPLH+A+ G + +V LL+ A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 272 PDIPTVRGETPLHLAARANQTDIIRILLRNGA 303
+ G TPLHLAAR +++++LL GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.5 bits (213), Expect = 1e-20
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 30/116 (25%)
Query: 36 NGLNALHLASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGD 95
NG LHLA+++GHL VV LL GA+V++ K G T LH+A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----------------- 43
Query: 96 GFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN 147
+ GH +VV +LLE + + K+G TPL +A + GH +VV +LLE
Sbjct: 44 ---------RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 80.1 bits (199), Expect = 1e-18
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 245 SGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
+G TPLH+A+ G + +V LL+ A+ + G TPLHLAAR +++++LL GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 305 VDARAREGHTALSIAQKLGYISVEESL 331
V+A+ + G T L +A + G++ V + L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 78.2 bits (194), Expect = 5e-18
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 28/116 (24%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
G T AAR GHL+ +++ L + D+N + NG LHLA+++GHL VV LL GA+
Sbjct: 2 GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 63 VDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
V++ K G T LH+A+ + GH +VV +LLE
Sbjct: 61 VNAKDKNGRTPLHLAA--------------------------RNGHLEVVKLLLEA 90
Score = 75.9 bits (188), Expect = 4e-17
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
L++ + + K+G TPLH+A+ G+ V +LL+ ADVN K+G TPLH+A+ G
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 258 CMNIVIYLLQNDA 270
+ +V LL+ A
Sbjct: 80 HLEVVKLLLEAGA 92
Score = 72.4 bits (179), Expect = 5e-16
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 384 NGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHL 443
NG TPLHL A+ + V +LLL+ GA NA+ G TPLHL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-------------------GADVNAKDKNGRTPLHL 41
Query: 444 SASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+A GH ++ +LLE GADV+ K G T L +A + G++ V + L
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 53.5 bits (130), Expect = 2e-09
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGA 61
G T AAR GHL+ +++ L + D+N + NG LHLA+++GHL VV LL GA
Sbjct: 35 GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 101 bits (252), Expect = 9e-24
Identities = 41/286 (14%), Positives = 85/286 (29%), Gaps = 51/286 (17%)
Query: 199 LIKNEHNPDVTSKSGFTPL-HIASHYGNEGVANILLDKRADVNFSA-KSGLTPLHVASFM 256
L + N + S H++ + V + + + ++N + G TPLH + +
Sbjct: 82 LNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI 141
Query: 257 GCMNIVIYLLQNDANPDIPTVRGETPLHLAARAN----QTDIIRILLRNGAQVDARAREG 312
+ +V +L+++ +N GE+ L A ++ +L +
Sbjct: 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 201
Query: 313 HTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETL 372
T L H ++ + + L + +
Sbjct: 202 RTILH-----------------------------HIIITSGMTGCSAAAKYYLDILMGWI 232
Query: 373 IIAKG-DGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPN 431
+ + + N +R L N
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL---------------KWIIANMLN 277
Query: 432 AESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIA 477
A+ G T L+++A G+ + LL++GAD A K G +
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 99.7 bits (248), Expect = 3e-23
Identities = 43/290 (14%), Positives = 88/290 (30%), Gaps = 67/290 (23%)
Query: 4 GHTSFLRAARAGHLDKIIEHLKN-NVDINTA-NANGLNALHLASKDGHLHVVTELLSRGA 61
+ + L ++ + N +++N + +G LH + +L +V L+ G+
Sbjct: 96 SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 155
Query: 62 NVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR 121
N G + L A V + F L + + +
Sbjct: 156 NRLYGDNMGESCLVKA--------VKSVNNYDSGTFEAL---LDYLYPCL-------ILE 197
Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVD 181
T L H + + + AAK L++
Sbjct: 198 DSMNRTIL-------HH------------------IIITSGMTGCSAAAKYYLDILM--- 229
Query: 182 PASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGN----EGVANILLDKRA 237
G+++K ++ P + + + ++
Sbjct: 230 ---------------GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274
Query: 238 DVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAA 287
+N +G T L++A+ +G ++IV LL A+P I G P+ A
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 86.2 bits (213), Expect = 1e-18
Identities = 41/339 (12%), Positives = 84/339 (24%), Gaps = 99/339 (29%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELL-SRGA 61
+ R + ++ + N+ + S D L V + +
Sbjct: 62 KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 121
Query: 62 NVDSAT-KKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN-- 118
N++ + GNT LH + + ++V L+++
Sbjct: 122 NLNIPVDEHGNTPLHWLT--------------------------SIANLELVKHLVKHGS 155
Query: 119 --DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHIAAKKDDTKAAKLLLEV 176
G + L A++ ++ D+ + LL+
Sbjct: 156 NRLYGDNMGESCLVKAVKSVNNY--------------------------DSGTFEALLD- 188
Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIA------------SHYG 224
YL D T LH + Y
Sbjct: 189 ---------------------YLYPCLILED---SMNRTILHHIIITSGMTGCSAAAKYY 224
Query: 225 NEGVANILLDKRADVNFSAKSGLTPLHVA----SFMGCMNIVIYLLQNDANPDIPTVRGE 280
+ + ++ K+ S + + + + G+
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 284
Query: 281 TPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
T L++AAR I+ LL GA + G +
Sbjct: 285 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 82.4 bits (203), Expect = 2e-17
Identities = 31/220 (14%), Positives = 63/220 (28%), Gaps = 28/220 (12%)
Query: 198 YLIKNEHNPDVTS-KSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFM 256
+ N ++ + G TPLH + N + L+ ++ + G + L A
Sbjct: 115 AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS 174
Query: 257 G----CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTD------------IIRILLR 300
L + T LH + ++ +++
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234
Query: 301 NGAQVDARAREGHTALSIAQKLGYISVEE---SLGAAERSQLKKRGREGHTALSIAQKLG 357
+ + + L + L + G T L+IA +LG
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294
Query: 358 YISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQED 396
+ + L+ D +K+GL P+ A +
Sbjct: 295 N-------ISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327
Score = 82.0 bits (202), Expect = 2e-17
Identities = 41/294 (13%), Positives = 79/294 (26%), Gaps = 49/294 (16%)
Query: 202 NEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCM-N 260
N + L + + L + ++ N S SF +
Sbjct: 52 PVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE 111
Query: 261 IVIYLLQNDANPDIPT-VRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIA 319
+ N +IP G TPLH ++++ L+++G+ G + L
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCL--- 168
Query: 320 QKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGDG 379
A+ + E L + LI
Sbjct: 169 ---------------------------VKAVKSVNNYDSGTFEALLDYLYPCLI------ 195
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
+ T LH + K + + +++ +P
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDI-------LMGWIVKKQNRPIQSGTNEKE 248
Query: 440 PLHLSASEGHADMSAMLLEH----GADVSHAAKEGHTALSIAQKLGYISVEESL 489
+ D L+ ++ G T L+IA +LG IS+ ++L
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 92.6 bits (231), Expect = 7e-23
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 220 ASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRG 279
S + + ++ L+ + + + L A+ G + V L+ N A+ G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 280 ETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESL 331
TPLHLAAR +++++LL GA V A+ + G TA I+ G + E L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 86.9 bits (216), Expect = 7e-21
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
L+ + S L A+ G + IL+ ADV K+G TPLH+A+ G
Sbjct: 12 GLV--PRGSHMGSD-LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68
Query: 258 CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ +V LL+ A+ G+T ++ D+ IL
Sbjct: 69 HLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 81.9 bits (203), Expect = 5e-19
Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 35/139 (25%)
Query: 11 AARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGANVDSATKK 69
+ H L + ++ L A++ G V L++ GA+V + K
Sbjct: 1 GSSHHHHH-HSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 70 GNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDG 125
G+T LH+A+ + GH +VV +LLE + K G
Sbjct: 57 GSTPLHLAA--------------------------RNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 126 FTPLAVAMQQGHDKVVAVL 144
T +++ G++ + +L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 74.5 bits (184), Expect = 2e-16
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 366 KGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLE 425
+ L+ +G + L A+ + +L+ N
Sbjct: 7 HHHSSGLV-PRG-SHMGSDLGKKLLEAARAGQDDEVRILMAN------------------ 46
Query: 426 YGAKPNAESVAGFTPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISV 485
GA A+ G TPLHL+A GH ++ +LLE GADV K G TA I+ G +
Sbjct: 47 -GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105
Query: 486 EESLK 490
E L+
Sbjct: 106 AEILQ 110
Score = 73.0 bits (180), Expect = 5e-16
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 37/138 (26%)
Query: 44 ASKDGHLHVVTELLSRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVA 103
S H H + L+ RG+++ L A+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAA------------------------- 32
Query: 104 MQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLEN----DTRGKVRL 155
+ G D V +L+ N + K+G TPL +A + GH +VV +LLE + K
Sbjct: 33 -RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91
Query: 156 PALHIAAKKDDTKAAKLL 173
A I+ + A++L
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
Score = 69.9 bits (172), Expect = 5e-15
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 4 GHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRGAN 62
L AARAG D + L N D+ + NG LHLA+++GHL VV LL GA+
Sbjct: 24 LGKKLLEAARAGQDD-EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 63 VDSATKKGNTALHIAS 78
V + K G TA I+
Sbjct: 83 VXAQDKFGKTAFDISI 98
Score = 65.3 bits (160), Expect = 2e-13
Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 33/138 (23%)
Query: 132 AMQQGHDKVVAVLLEN----DTRGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLS 187
H + L+ + L AA+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLGK---KLLEAARAGQDDEVR---------------- 41
Query: 188 STTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL 247
L+ N + K+G TPLH+A+ G+ V +LL+ ADV K G
Sbjct: 42 ----------ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91
Query: 248 TPLHVASFMGCMNIVIYL 265
T ++ G ++ L
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
Score = 33.7 bits (78), Expect = 0.031
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 445 ASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
+S H S+ L+ G+ + + L A + G L
Sbjct: 2 SSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRIL 43
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 88.1 bits (218), Expect = 2e-19
Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
Query: 218 HIASHYGNEGVANILLDKRADVNFSAK------SGLTPLHVASFMG---CMNIVIYLLQN 268
A + D LH+A + + +V +++QN
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 269 DANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVE 328
+ D G T LH AA NQ D +++LL+ A V G TAL IA+K + E
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 329 ESLGAAERSQL 339
E L A+
Sbjct: 276 ELLEQAQAGTF 286
Score = 68.5 bits (167), Expect = 7e-13
Identities = 30/111 (27%), Positives = 47/111 (42%)
Query: 380 EKHKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFT 439
E NG D EL+L +V + + +++ G +A++ G T
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228
Query: 440 PLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
LH +A D +LL+ A V + G TAL IA+K + EE L+
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279
Score = 58.8 bits (142), Expect = 9e-10
Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 41/166 (24%)
Query: 8 FLRAARAGHLDKIIEHLKNNVDIN------TANANGLNALHLASKDGH---LHVVTELLS 58
A L ++E N D A A LHLA K + L +V ++
Sbjct: 155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 214
Query: 59 RGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN 118
G ++D+ GNTALH A+ + +LL+
Sbjct: 215 NGGHLDAKAADGNTALHYAA--------------------------LYNQPDCLKLLLKG 248
Query: 119 ----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLPALHI 160
T + G T L +A ++ H + LLE G P LH+
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEE-LLEQAQAGTFAFP-LHV 292
Score = 55.4 bits (133), Expect = 1e-08
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 1 SGEGHTSFLRAARAGHLDK--IIEHLK-NNVDINTANANGLNALHLASKDGHLHVVTELL 57
A + + +++ + N ++ A+G ALH A+ + LL
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246
Query: 58 SRGANVDSATKKGNTALHIA 77
A V + + G TAL IA
Sbjct: 247 KGRALVGTVNEAGETALDIA 266
Score = 53.8 bits (129), Expect = 5e-08
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 198 YLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGLTPLHVASFMG 257
++I+N + D + G T LH A+ Y +LL RA V ++G T L +A
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270
Query: 258 CMNIVIYLLQNDAN 271
L Q A
Sbjct: 271 HKECEELLEQAQAG 284
Score = 48.4 bits (115), Expect = 2e-06
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 377 GDGEKHKNGLTPLHL---CAQEDRVGVAELLLKNNAQVDTPT--------------KMDI 419
+ LHL A + + + + +++N +D + D
Sbjct: 182 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 241
Query: 420 ATTLLEYGAKPNAESVAGFTPLHLSASEGHADMSAMLLE 458
LL+ A + AG T L ++ + H + +L +
Sbjct: 242 LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 39.2 bits (91), Expect = 0.002
Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 47/144 (32%)
Query: 279 GETPLHLAARA---NQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAE 335
E LHLA + ++ +++NG +DA+A +G+TAL A +
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN------QPDCLK 243
Query: 336 RSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCAQ 394
L+ + G ++ G T L + +
Sbjct: 244 L-----------------------------------LLKGRALVGTVNEAGETALDIARK 268
Query: 395 EDRVGVAELLLKNNAQVDTPTKMD 418
+ ELL + AQ T
Sbjct: 269 KHHKECEELLEQ--AQAGTFAFPL 290
Score = 38.0 bits (88), Expect = 0.005
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 39/125 (31%)
Query: 124 DGFTPLAVAMQQGHDKVVAV---LLEN-------DTRGKVRLPALHIAAKKDDTKAAKLL 173
L +A++ + + + +++N G ALH AA + KLL
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT---ALHYAALYNQPDCLKLL 245
Query: 174 LEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
L+ +++G T L IA ++ +L
Sbjct: 246 LKGRA--------------------------LVGTVNEAGETALDIARKKHHKECEELLE 279
Query: 234 DKRAD 238
+A
Sbjct: 280 QAQAG 284
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 87.0 bits (215), Expect = 3e-19
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 248 TPLHVASFMG---CMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILLRNGAQ 304
T LH+A ++IV +L+QN N D T +G T LH + + +++LLR A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 305 VDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
++ G T L IA++L + EE L A +
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265
Score = 75.8 bits (186), Expect = 2e-15
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 204 HNPDVTSKSGFTPLHIASHYGNEG---VANILLDKRADVNFSAKSGLTPLHVASFMGCMN 260
+ T LH+A + + + L+ +++ G T LH
Sbjct: 160 IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219
Query: 261 IVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRILL 299
+ LL+ A+ +I GETPL +A R +L
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 68.5 bits (167), Expect = 6e-13
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 382 HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPL 441
H+ T LHL + T + I L++ + ++ G T L
Sbjct: 166 HEPDETALHLAVR----------------SVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209
Query: 442 HLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESL 489
H +A+ +LL A + A + G T L IA++L + EE L
Sbjct: 210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 57.3 bits (138), Expect = 3e-09
Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 39/153 (25%)
Query: 7 SFLRAARAGHLDKIIEHLKNNVDIN------TANANGLNALHLASKDG---HLHVVTELL 57
S A + + +++ + VD+ + ALHLA + LH+V L+
Sbjct: 133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 192
Query: 58 SRGANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLE 117
N+D T KG+TALH + + + +LL
Sbjct: 193 QNSGNLDKQTGKGSTALHYCC--------------------------LTDNAECLKLLLR 226
Query: 118 N----DTRGKDGFTPLAVAMQQGHDKVVAVLLE 146
+ + G TPL +A + H+ +L +
Sbjct: 227 GKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 55.0 bits (132), Expect = 2e-08
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 24/125 (19%)
Query: 335 ERSQLKKRGREGHTALSIAQKLGYISVEESLKGVTETLIIAKGD-GEKHKNGLTPLHLCA 393
E+ L TAL +A + + + + + L+ G+ ++ G T LH C
Sbjct: 158 EKIPLANGHEPDETALHLAVRSV----DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC 213
Query: 394 QEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGHADMS 453
D +LLL+ A + +G TPL ++ H
Sbjct: 214 LTDNAECLKLLLRG-------------------KASIEIANESGETPLDIAKRLKHEHCE 254
Query: 454 AMLLE 458
+L +
Sbjct: 255 ELLTQ 259
Score = 54.6 bits (131), Expect = 2e-08
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 1 SGEGHTSFLRAARAGHLDK--IIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELL 57
T+ A R+ I++ L +N+ +++ G ALH + + LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 58 SRGANVDSATKKGNTALHIA 77
A+++ A + G T L IA
Sbjct: 226 RGKASIEIANESGETPLDIA 245
Score = 53.8 bits (129), Expect = 4e-08
Identities = 24/97 (24%), Positives = 39/97 (40%)
Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
E T +V S + +L++N N D + G T LH N +LL
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226
Query: 235 KRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDAN 271
+A + + +SG TPL +A + + L Q +
Sbjct: 227 GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 36.9 bits (85), Expect = 0.012
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 33/117 (28%)
Query: 124 DGFTPLAVAMQQGHDKVVAV---LLENDTRGKVRLP----ALHIAAKKDDTKAAKLLLEV 176
T L +A++ + + L++N + ALH D+ + KLLL
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-- 225
Query: 177 SCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILL 233
+ + + ++ ++SG TPL IA +E +L
Sbjct: 226 ------------------------RGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 36.1 bits (83), Expect = 0.019
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 2 GEGHTSFLRAARAGHLDKIIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
G+G T+ + + ++ L + I AN +G L +A + H H L
Sbjct: 203 GKGSTALHYCCLTDNAE-CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261
Query: 61 AN 62
+
Sbjct: 262 SG 263
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 86.4 bits (213), Expect = 1e-18
Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 2/180 (1%)
Query: 161 AAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIA 220
K + + + P S + + + G +
Sbjct: 148 LTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRAS 207
Query: 221 SHYGNEGVANILLDKRADVNF--SAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVR 278
H + L ADVN+ + TPL A+ + +LLQN AN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 279 GETPLHLAARANQTDIIRILLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQ 338
G PLH A T + + L+ GA + AR EG L+IA + + L A+ +
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327
Score = 64.4 bits (156), Expect = 2e-11
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 382 HKNGLTPLHLCAQEDRVGVAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPL 441
++ TPL + + E LL+N A V+ G PL
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSA-------------------GRGPL 272
Query: 442 HLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLK 490
H + GH ++ + L+ GAD+ EG L+IA + + L+
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 57.9 bits (139), Expect = 3e-09
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 11 AARAGHLDKIIEHLKNNVDINTANAN--GLNALHLASKDGHLHVVTELLSRGANVDSATK 68
+ L + + L + D+N N L A+ L LL GANV+ A
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266
Query: 69 KGNTALHIASLGEFLVPVWL-------GDFKQGDGFTPLAVAMQQGHDKVVAVLLENDTR 121
G LH A++ L + +G PL +AM+ + +V +L R
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326
Query: 122 GKDGF 126
+
Sbjct: 327 EAEAA 331
Score = 55.6 bits (133), Expect = 2e-08
Identities = 21/88 (23%), Positives = 37/88 (42%)
Query: 186 LSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKS 245
++ + +L++N N + +G PLH A+ G+ G+A + L + AD+
Sbjct: 241 QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE 300
Query: 246 GLTPLHVASFMGCMNIVIYLLQNDANPD 273
G PL +A +IV L
Sbjct: 301 GRDPLTIAMETANADIVTLLRLAKMREA 328
Score = 55.2 bits (132), Expect = 2e-08
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 1 SGEGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELLSRG 60
+ T ++A A L L+N ++N A++ G LH A+ GH + L RG
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 61 ANVDSATKKGNTALHIA 77
A++ + +G L IA
Sbjct: 292 ADLGARDSEGRDPLTIA 308
Score = 39.4 bits (91), Expect = 0.002
Identities = 22/98 (22%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 95 DGFTPLAVAMQQGHDKVVAVLLEN----DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTR 150
D TPL A LL+N + G PL A GH + + L+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 151 GKVRLP----ALHIAAKKDDTKAAKLLLEVSCTVDPAS 184
R L IA + + LL A+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAA 331
Score = 38.2 bits (88), Expect = 0.005
Identities = 25/120 (20%), Positives = 33/120 (27%), Gaps = 36/120 (30%)
Query: 122 GKDGFTPLAVAMQQGHDKVVAVLLEN-------DTRGKVRLPALHIAAKKDDTKAAKLLL 174
G+D TPL A LL+N D+ G+ LH A T A L L
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR---GPLHHATILGHTGLACLFL 288
Query: 175 EVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLD 234
+ + G PL IA N + +L
Sbjct: 289 KRGA--------------------------DLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 34.0 bits (77), Expect = 0.11
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 3 EGHTSFLRAARAGHLDKIIEHLKNNVDINTANANGLNALHLASKDGHLHVVTELL 57
G A GH LK D+ ++ G + L +A + + +VT L
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 79.9 bits (197), Expect = 4e-16
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 242 SAKSGLTPLHVASFM---GCMNIVIYLLQNDANPDIPTVRGETPLHLAARANQTDIIRIL 298
+ LH+A + + +V +++QN + D G T LH AA NQ D +++L
Sbjct: 167 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 226
Query: 299 LRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQL 339
L+ A V G TAL IA+K + EE L A+
Sbjct: 227 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267
Score = 56.8 bits (137), Expect = 8e-09
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 22/150 (14%)
Query: 382 HKNGLTPLHL-CAQEDRVGV--AELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGF 438
LHL ++ + + +++N +D G
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD-------------------GN 208
Query: 439 TPLHLSASEGHADMSAMLLEHGADVSHAAKEGHTALSIAQKLGYISVEESLKGVTETLII 498
T LH +A D +LL+ A V + G TAL IA+K + EE L+
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268
Query: 499 AKGDGEKHKVVAPEIMQETFMSDSEDENGE 528
+ V++ E + S
Sbjct: 269 FPLHVDYSWVISTENLSSDSSLSSPSALNS 298
Score = 56.8 bits (137), Expect = 9e-09
Identities = 36/161 (22%), Positives = 54/161 (33%), Gaps = 40/161 (24%)
Query: 9 LRAARAGHLDKIIEHLKNNVDIN------TANANGLNALHLA---SKDGHLHVVTELLSR 59
A L ++E N D A A LHLA + L +V ++
Sbjct: 137 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 196
Query: 60 GANVDSATKKGNTALHIASLGEFLVPVWLGDFKQGDGFTPLAVAMQQGHDKVVAVLLEN- 118
G ++D+ GNTALH A+L + +LL+
Sbjct: 197 GGHLDAKAADGNTALHYAALY--------------------------NQPDCLKLLLKGR 230
Query: 119 ---DTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGKVRLP 156
T + G T L +A ++ H + LLE G P
Sbjct: 231 ALVGTVNEAGETALDIARKKHHKECEE-LLEQAQAGTFAFP 270
Score = 52.6 bits (126), Expect = 2e-07
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 8/129 (6%)
Query: 173 LLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIA---SHYGNEGVA 229
L C D SVL A G LH+A ++ + +
Sbjct: 136 LWTAICNRDLLSVLE-----AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190
Query: 230 NILLDKRADVNFSAKSGLTPLHVASFMGCMNIVIYLLQNDANPDIPTVRGETPLHLAARA 289
+ ++ ++ A G T LH A+ + + LL+ A GET L +A +
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
Query: 290 NQTDIIRIL 298
+ + +L
Sbjct: 251 HHKECEELL 259
Score = 44.9 bits (106), Expect = 5e-05
Identities = 22/88 (25%), Positives = 35/88 (39%)
Query: 184 SVLSSTTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSA 243
+V + + ++I+N + D + G T LH A+ Y +LL RA V
Sbjct: 178 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN 237
Query: 244 KSGLTPLHVASFMGCMNIVIYLLQNDAN 271
++G T L +A L Q A
Sbjct: 238 EAGETALDIARKKHHKECEELLEQAQAG 265
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 2 GEGHTSFLRAARAGHLDK--IIEHL-KNNVDINTANANGLNALHLASKDGHLHVVTELLS 58
A + + +++ + +N ++ A+G ALH A+ + LL
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
Query: 59 RGANVDSATKKGNTALHIAS 78
A V + + G TAL IA
Sbjct: 229 GRALVGTVNEAGETALDIAR 248
Score = 33.3 bits (76), Expect = 0.20
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 100 LAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAV---LLEN-------DT 149
+ A G D L L +A++ + + + +++N
Sbjct: 148 VLEAFANGQD--FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA 205
Query: 150 RGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAAT 195
G ALH AA + KLLL+ V + T + A
Sbjct: 206 DGN---TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 1e-06
Identities = 50/287 (17%), Positives = 76/287 (26%), Gaps = 88/287 (30%)
Query: 223 YGNEGVANILLDKRADVNFSAKSGLTPLHVAS---------FMGC--------MNIVIYL 265
Y A + + RAD +F G + L + F G + +I+
Sbjct: 1636 YKTSKAAQDVWN-RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 266 LQNDANPDIPTVRGETPLHLAARA--------NQTD------------IIRILLRNGAQV 305
D + E H + + T L G
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 306 DARAREGH-----TAL-SIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYI 359
GH AL S+A +S+E + + RG A
Sbjct: 1755 ADATFAGHSLGEYAALASLA---DVMSIESLV-----EVVFYRGMTMQVA---------- 1796
Query: 360 SVEESLKGVTETLIIAKGDGEKHKNGLTPLHLCAQEDRVGVAELLLK---------N--- 407
V G + +IA G + +QE V E + K N
Sbjct: 1797 -VPRDELGRSNYGMIAINPGRVAAS-------FSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 408 -NAQV----DTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEGH 449
N Q D +D T +L + + + L L EGH
Sbjct: 1849 ENQQYVAAGDLRA-LDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 47.4 bits (112), Expect = 1e-05
Identities = 95/533 (17%), Positives = 172/533 (32%), Gaps = 164/533 (30%)
Query: 4 GHTS-FLRAARAGHLDKIIEH---------LKNNVDINTANANGLNALHL-ASKDGHLHV 52
G+ S + ++ G D+++ L+ N DI+ A L D L
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DIHAL------AAKLLQENDTTLVK 118
Query: 53 VTELL-----SRGANVDSATKKGNTAL-HIASLGEF-LVPVWLGDFKQGDG--------- 96
EL+ +R KK N+AL G LV ++ G QG+
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG---QGNTDDYFEELRD 175
Query: 97 ----FTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDTRGK 152
+ L + + + ++ L+ + FT QG + ++ L
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-------QGLN-ILEWLENPSNT-- 225
Query: 153 VRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGYLIKNEHNPDVTSK- 211
P KD + +SC P + Y+ VT+K
Sbjct: 226 ---PD------KDYLLSI----PISC---PLIGV------IQLAHYV--------VTAKL 255
Query: 212 SGFTPLHIASHY-GNEGVANILL--------DKRADVNFSAKSGLTPLHVASFMGC---- 258
GFTP + S+ G G + L+ D S + +T V F+G
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT---VLFFIGVRCYE 312
Query: 259 ----MNIVIYLLQN--DANPDIPT----VRGETPLHLAARANQT-------DIIRILLRN 301
++ +L++ + N +P+ + T + N+T + I L N
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 302 GAQ--VDARAREGHT-AL-SIAQKLGYISVEESL--GAAERSQLKKRGREG--------H 347
GA+ V + G +L + L L S+ K + H
Sbjct: 373 GAKNLVVS----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 348 TAL------SIAQKLGYISVE---ESLK-GVTETLIIAKGDGEKHKNGLTPLHLCAQEDR 397
+ L I + L +V + ++ V +T DG L
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT-----FDGS---------DLRVLSGS 474
Query: 398 VG--VAELLLKNNAQVDTPTKMDIATTLLEYGAKPNAESVAGFTPLHLSASEG 448
+ + + +++ + +T T+ AT +L++G P +G L +G
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFK-ATHILDFG--PGG--ASGLGVLTHRNKDG 522
Score = 38.5 bits (89), Expect = 0.007
Identities = 32/199 (16%), Positives = 56/199 (28%), Gaps = 68/199 (34%)
Query: 2 GEGHTSF---LRAARAGHLDKIIE----HLKNNVDINTANANGLNALHLASKDGH---LH 51
EG S + + + HL + + NG L ++ G L+
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---GPPQSLY 387
Query: 52 -VVTELLSRGANVDSATKKGNT-----ALHIASLGEFL---VPVWLGDFKQGDGFTPLAV 102
+ L R A S + L ++ FL P F + L
Sbjct: 388 GLNLTL--RKAKAPSGLDQSRIPFSERKLKFSN--RFLPVASP-----F-----HSHL-- 431
Query: 103 AMQQGHDKVVAVLLEN--------------DTR-GKDGFTPLAVAMQQGHDKVVAVLLEN 147
+ D + L++N DT G D ++ + +++
Sbjct: 432 -LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD--------LRVLSGSISERIVDC 482
Query: 148 DTRGKV------RLPALHI 160
R V + A HI
Sbjct: 483 IIRLPVKWETTTQFKATHI 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 55/392 (14%), Positives = 107/392 (27%), Gaps = 139/392 (35%)
Query: 17 LD-----KIIEHLKNNVDI-----NTANANGLNAL---HLASKDGHLHVVTE-----LLS 58
L K + I + L+A H++ H +T LL
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLL 308
Query: 59 RGANVD-----SATKKGNTALHIASLGEFL---VPVWLGDFKQGDGFTPLAVAMQQGHDK 110
+ + N ++ + E + + W D + L ++
Sbjct: 309 KYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIESS--- 362
Query: 111 VVAVLLENDTRGKDGFTPLAV--------------------------AMQQGHDKVVAVL 144
+ VL + R F L+V + + H +++
Sbjct: 363 -LNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLV 417
Query: 145 LENDTRGKVRLPALHIAAK-KDDTKAA--KLLLEVSCTVDPASVLSSTTGNAATGGYLIK 201
+ + +P++++ K K + + A + +++ Y I
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVD---------------------HYNIP 456
Query: 202 NEHNPDVTSKSGFTPL--------HIASHYGNEGVA-------NILLDKRADVNF-SAKS 245
+ D P HI H N + LD R F K
Sbjct: 457 KTFDSD-----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR----FLEQKI 507
Query: 246 GLTPLHVASFMGCMNIVI-------YLLQNDANPD---------IPTVRGETPLHLAARA 289
+ +N + Y+ ND + +P + E L +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI--EENLI---CS 562
Query: 290 NQTDIIRILLRNGAQVDARAREGHTALSIAQK 321
TD++RI L + +A E A Q+
Sbjct: 563 KYTDLLRIALMA--EDEAIFEE---AHKQVQR 589
Score = 35.2 bits (80), Expect = 0.067
Identities = 51/407 (12%), Positives = 107/407 (26%), Gaps = 153/407 (37%)
Query: 90 DFKQGDGFTPLAVAMQQGHDKVVAVLLENDTRGKDGFTPLAVAMQQGHDKVVAVLLENDT 149
DF+ G+ Q + +++V + D + D ++L + +
Sbjct: 8 DFETGE--------HQYQYKDILSVFEDAFVDNFD--------CKDVQDMPKSILSKEEI 51
Query: 150 RGKVRLPALHIAAKKDDTKAAKLLLEVSCTVDPASVLSSTTGNAATGGY-----LIKNE- 203
HI KD L + ++ Y IK E
Sbjct: 52 D--------HIIMSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 204 -------------HNPDVTSKSGFTPLHIASH---------------------YGNEG-- 227
+ F +++ G G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 228 ----VANILLDKRADVNFSAKSGLTPLHVASF---MGCMNI---VIYLLQN--------- 268
++ L + + F + N V+ +LQ
Sbjct: 163 KTWVALDVCLSYKVQCKM-------DFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 269 DANPDIPTVRGETPLHL-AARANQTDIIR--------ILLRNGAQV-DARAREGHTALSI 318
+ D + L + + +A +++ ++L N V +A+A A ++
Sbjct: 214 TSRSDHSS---NIKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQNAKAWN---AFNL 264
Query: 319 AQKL----GYISVEESLGAAERSQLKKRGREGHTALSIAQKLGYISVEESLKGVT--ETL 372
+ K+ + V + L AA + +IS++ +T E
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTT--------------------HISLDHHSMTLTPDEVK 304
Query: 373 -IIAKGDGEKHKN------GLTPLHLCAQEDRVGVAELLLKNNAQVD 412
++ K + ++ P L +AE + A D
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLS------IIAESIRDGLATWD 345
>2rld_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.70A {Bacteroides thetaiotaomicron
vpi-5482} SCOP: a.29.16.1
Length = 121
Score = 34.0 bits (78), Expect = 0.025
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 298 LLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLG 357
+LR+G + A RE A S A + +++ +L A E L + +
Sbjct: 42 ILRSGTSIGANIREAEQAQSRADFINKLNI--ALKEA---------NETEYWLELLIRTE 90
Query: 358 YISVEESLKGVTETLIIAK 376
YI+ E+ ++ I K
Sbjct: 91 YITREQYESINNDSTEINK 109
Score = 27.9 bits (62), Expect = 4.3
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 467 AKEGHTALSIAQKLGYISVEESLKGVTETLIIAK 500
A E L + + YI+ E+ ++ I K
Sbjct: 76 ANETEYWLELLIRTEYITREQYESINNDSTEINK 109
>2gsc_A Putative uncharacterized protein XCC0516; four-helix bundle,
homopentamer, pentameric toroid, unknown function; 2.45A
{Xanthomonas campestris PV} SCOP: a.29.16.1
Length = 128
Score = 28.0 bits (62), Expect = 3.4
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 298 LLRNGAQVDARAREGHTALSIAQKLGYISVEESLGAAERSQLKKRGREGHTALSIAQKLG 357
L R + + EG S ++S + G+ E T + IA +LG
Sbjct: 46 LRRAAVSIPSNIAEGAARRSTPDYSRFLS--IARGSLS---------ELDTQVQIAARLG 94
Query: 358 YISVEESLKGVTETLIIAK 376
Y E+ + ++
Sbjct: 95 YSRSEDDQSVRRQVDLVFA 113
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG,
P structure initiative; 1.80A {Listeria innocua}
Length = 254
Score = 29.0 bits (64), Expect = 3.5
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 188 STTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL 247
++ G G L K+ P + K GF ++ + + D ++ F+ G
Sbjct: 42 NSEGKIKFEGKLTKDAKRPII--KFGFEQNQATPDDWSKWLKIAMEDLKSRYGFTQMDG- 98
Query: 248 TPLHVASFMGCMNIVIYLLQNDANPDIPTVR 278
V G + + Y + +PT+R
Sbjct: 99 ----VGHSNGGLALTYYAEDYAGDKTVPTLR 125
>3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG,
protein structure initiative, midwest center FO
structural genomics; 2.00A {Lactobacillus plantarum}
Length = 250
Score = 27.8 bits (61), Expect = 9.5
Identities = 10/92 (10%), Positives = 22/92 (23%), Gaps = 6/92 (6%)
Query: 188 STTGNAATGGYLIKNEHNPDVTSKSGFTPLHIASHYGNEGVANILLDKRADVNFSAKSGL 247
T G G + N++ P + + + A L A
Sbjct: 43 QTDGTIKYSGSIAANDNEPFIVIG---FANNRDGKANIDKQAVWL--NTAFKALVKTYHF 97
Query: 248 TPLHVASF-MGCMNIVIYLLQNDANPDIPTVR 278
+ G + ++L + +
Sbjct: 98 NHFYALGHSNGGLIWTLFLERYLKESPKVHID 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.366
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,793,532
Number of extensions: 493171
Number of successful extensions: 3882
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1387
Number of HSP's successfully gapped: 443
Length of query: 529
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 431
Effective length of database: 3,965,535
Effective search space: 1709145585
Effective search space used: 1709145585
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.6 bits)