BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2358
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D8O|A Chain A, Crystal Structure Of The Ankyrin-B Zu5-Zu5-Upa-Dd Tandem
Length = 581
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 165/269 (61%), Positives = 197/269 (73%), Gaps = 22/269 (8%)
Query: 14 AQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPT 73
AQP+ +++ K+LGN+ SPIVT+EPRRRKFHKPIT+TIPVP+A SGDAPT
Sbjct: 220 AQPMHSELVKKILGNKATFSPIVTLEPRRRKFHKPITMTIPVPKA---------SGDAPT 270
Query: 74 LRLLCSITGGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATEL 133
LRLLCSITGGT AQWED+TGTTPLTFV +CVSFTT VSARFWL+DCR +Q+S A+++
Sbjct: 271 LRLLCSITGGTTPAQWEDITGTTPLTFVNECVSFTTNVSARFWLIDCRQIQESVTFASQV 330
Query: 134 YREAIHVPFMAKFVVFAKRIEQLEARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVEVLE 193
YRE I VP+MAKFVVFAK + +EARLR FCMTDDK DKTLE QE+F EVA+SRDVEVLE
Sbjct: 331 YREIICVPYMAKFVVFAKSHDPIEARLRCFCMTDDKVDKTLEQQENFAEVARSRDVEVLE 390
Query: 194 GKSQFVEFAGNLVPVTKSGDQLRLGFRAFRENRLPFTVRVKDPHADVIGRTLFMREPKVS 253
GK +V+ GNLVP+TKSG F AF+ENRLP V+V+D + GR FM+EPK +
Sbjct: 391 GKPIYVDCFGNLVPLTKSGQHHIFSFFAFKENRLPLFVKVRDTTQEPCGRLSFMKEPKST 450
Query: 254 KGEAPQQPICVSKGEAPQQPICVLNIVLP 282
+G Q IC LNI LP
Sbjct: 451 RGLV-------------HQAICNLNITLP 466
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 305 SSGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYREAIHV 364
+ GT AQWED+TGTTPLTFV +CVSFTT VSARFWL+DCR +Q+S A+++YRE I V
Sbjct: 278 TGGTTPAQWEDITGTTPLTFVNECVSFTTNVSARFWLIDCRQIQESVTFASQVYREIICV 337
Query: 365 PFMAKFVVFAKRIEQLEARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVELL 416
P+MAKFVVFAK + +EARLR FCMTDDK DKTLE QE+F EVA+SRDVE+L
Sbjct: 338 PYMAKFVVFAKSHDPIEARLRCFCMTDDKVDKTLEQQENFAEVARSRDVEVL 389
>pdb|3UD1|A Chain A, Crystal Structure Of Zu5a-Zu5b Domains Of Human
Erythrocyte Ankyrin
pdb|3UD1|B Chain B, Crystal Structure Of Zu5a-Zu5b Domains Of Human
Erythrocyte Ankyrin
pdb|3UD1|C Chain C, Crystal Structure Of Zu5a-Zu5b Domains Of Human
Erythrocyte Ankyrin
Length = 326
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 86/123 (69%)
Query: 14 AQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPT 73
AQP+P ++ KLLGN+ SPIVT+EPRRRKFH+PI L IP+P + + GD +
Sbjct: 203 AQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTS 262
Query: 74 LRLLCSITGGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATEL 133
LRLLCS+ GGT +AQWED+TGTT L + +C +FTT VSARFWL DC ++ AT L
Sbjct: 263 LRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLL 322
Query: 134 YRE 136
Y+E
Sbjct: 323 YKE 325
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 306 SGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYRE 360
GT +AQWED+TGTT L + +C +FTT VSARFWL DC ++ AT LY+E
Sbjct: 271 GGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLLYKE 325
>pdb|3UD2|C Chain C, Crystal Structure Of Selenomethionine Zu5a-Zu5b Protein
Domains Of Human Erythrocyte Ankyrin
pdb|3UD2|B Chain B, Crystal Structure Of Selenomethionine Zu5a-Zu5b Protein
Domains Of Human Erythrocyte Ankyrin
pdb|3UD2|A Chain A, Crystal Structure Of Selenomethionine Zu5a-Zu5b Protein
Domains Of Human Erythrocyte Ankyrin
Length = 326
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 86/123 (69%)
Query: 14 AQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPT 73
AQP+P ++ KLLGN+ SPIVT+EPRRRKFH+PI L IP+P + + GD +
Sbjct: 203 AQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTS 262
Query: 74 LRLLCSITGGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATEL 133
LRLLCS+ GGT +AQWED+TGTT L + +C +FTT VSARFWL DC ++ AT L
Sbjct: 263 LRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLL 322
Query: 134 YRE 136
Y+E
Sbjct: 323 YKE 325
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 306 SGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYRE 360
GT +AQWED+TGTT L + +C +FTT VSARFWL DC ++ AT LY+E
Sbjct: 271 GGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLLYKE 325
>pdb|2W9X|A Chain A, The Active Site Of A Carbohydrate Esterase Displays
Divergent Catalytic And Non-Catalytic Binding Functions
pdb|2W9X|B Chain B, The Active Site Of A Carbohydrate Esterase Displays
Divergent Catalytic And Non-Catalytic Binding Functions
Length = 366
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 135 REAIHVPFMAKFVVFAKRIEQLEARLRVFCMTDDKEDKTLEHQ 177
REA+H ++A +V F K++ AR + M D+ + + Q
Sbjct: 262 REALHADYVANYVKFVKQLHSNNARAQFILMNSDQSNGEIAEQ 304
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 359 REAIHVPFMAKFVVFAKRIEQLEARLRVFCMTDDKEDKTLEHQ 401
REA+H ++A +V F K++ AR + M D+ + + Q
Sbjct: 262 REALHADYVANYVKFVKQLHSNNARAQFILMNSDQSNGEIAEQ 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,856,706
Number of Sequences: 62578
Number of extensions: 475254
Number of successful extensions: 1117
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 8
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)