Query psy2358
Match_columns 417
No_of_seqs 124 out of 147
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 22:56:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4177|consensus 100.0 1.3E-50 2.7E-55 450.0 -1.3 233 9-253 903-1135(1143)
2 KOG4177|consensus 99.8 6.8E-21 1.5E-25 213.5 -0.0 115 302-417 966-1080(1143)
3 PF00791 ZU5: ZU5 domain; Int 93.0 0.036 7.7E-07 47.4 0.6 35 25-59 54-88 (103)
4 smart00218 ZU5 Domain present 91.6 0.32 7E-06 42.2 4.8 49 26-82 55-103 (104)
5 KOG4088|consensus 32.6 67 0.0015 29.9 4.2 20 194-213 57-76 (167)
6 PRK15183 Vi polysaccharide bio 30.5 12 0.00026 33.2 -0.9 18 332-349 32-49 (143)
7 PF05404 TRAP-delta: Transloco 30.3 63 0.0014 30.6 3.7 73 194-284 57-135 (167)
8 KOG1480|consensus 21.3 80 0.0017 36.5 3.1 137 27-189 554-703 (909)
9 PF13553 FIIND: Function to fi 20.4 5.2E+02 0.011 26.1 8.3 138 92-234 81-226 (255)
10 COG3795 Uncharacterized protei 20.0 36 0.00079 30.7 0.1 34 323-356 65-98 (123)
No 1
>KOG4177|consensus
Probab=100.00 E-value=1.3e-50 Score=449.96 Aligned_cols=233 Identities=63% Similarity=0.993 Sum_probs=226.5
Q ss_pred eeEEEEEecCHHHHHHHcCCCceecceEEeecCCCCCCCCeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCccCc
Q psy2358 9 CGKWIAQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTARAQ 88 (417)
Q Consensus 9 ~V~LQaqpv~~~lv~~l~g~~~~~SPlvtvePrrrkFhkPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a~ 88 (417)
-++||+|||+.++++++.||+.++|||+++|||++|||+||++.+ .|+.+ +.+++++++||||||++||+.+|+
T Consensus 903 r~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~r~~~~~~~~~l~~-~~~~~-----~~~~~~t~~l~ll~~~~~~~~~a~ 976 (1143)
T KOG4177|consen 903 RVSLQAQPVPLEVVTKLLGNKATFSPIVTVEPRRRKFHKPITLRI-APGSN-----NAYSGDTPTLRLLCSITGGVAPAQ 976 (1143)
T ss_pred HHHHhcccccHHHHHHhcCCcccccceeeecchHHHhhhhhhhcc-ccccC-----cccCCCCchhhhhhcccCCcCcch
Confidence 467899999999999999999999999999999999999999999 88777 578888999999999999999999
Q ss_pred cccccCceeeeEecCeEEEEeeeeeeEEEecCCchhhHHHHHHHHHHhhcccceeeEEEEEEecCCccceEEEEEeeCCc
Q psy2358 89 WEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYREAIHVPFMAKFVVFAKRIEQLEARLRVFCMTDD 168 (417)
Q Consensus 89 WeDITg~t~l~~~~~~vsFtttvsaRfwL~~c~~~~~~~~~a~~Ly~e~~~vp~ma~fVvf~k~~dp~e~~L~~~C~tdd 168 (417)
|+|+||.+.+.+.|+|+||++++++|||++||+++.|...+++++|.|++++ ||++|++|+|+++|.++.++|||||||
T Consensus 977 ~~~~t~~~h~~~~~~~~~f~~~~~~r~~~~~~~~~~e~~~~~~~~~~e~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~ 1055 (1143)
T KOG4177|consen 977 WEDITGTTHLTFANDCGSFTTNVSARFWLVDCRKTREAVTHATQLYNELIFV-YMAKFVVFAKSNFPNEGRLRCFCMTDD 1055 (1143)
T ss_pred hhcccceeecccccccceeehhhhhHhhhhhcchhhhhhhHHHHHHHHHHHH-HHHHHhhhccCCcchhhccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccccccccccCccccccCCceeeecCceEEEEeecCcccccCCCceEEEEEEecccccceEEEEEcCCCCCceeEEEEee
Q psy2358 169 KEDKTLEHQEHFTEVAKSRDVEVLEGKSQFVEFAGNLVPVTKSGDQLRLGFRAFRENRLPFTVRVKDPHADVIGRTLFMR 248 (417)
Q Consensus 169 k~dktLe~qe~f~~~a~S~~vevlEG~~~~~ef~GNlvP~~k~g~ql~f~F~sfreNrL~~~Vkv~D~~~~~~G~vsF~r 248 (417)
|+++||+++++|.+.++|+|++|++|+..|++++||++|..+.|+|+.|.|.+|+||||.|+++.+ +. |++||++
T Consensus 1056 ~~~~~~~~~~~f~~~~~~~d~~v~~~~~~~~~~~~n~~p~~~~~~ql~~~~~~~~~~~l~~~~~~~----~~-g~~~~~~ 1130 (1143)
T KOG4177|consen 1056 KVDKTLEQQEYFAEVARSRDIEVLGGKGGFAEPSGNDVPLTKAGQQLSFCFVPFLENRLAFSVKKR----HA-GRISFMA 1130 (1143)
T ss_pred ccCcchhhHHHHHHhhhhhhhhhhccccceecccCccccceeccceeEEeeehhhhhhhHHHHHhh----cC-Ccceeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999 22 9999999
Q ss_pred ccccC
Q psy2358 249 EPKVS 253 (417)
Q Consensus 249 ~pk~~ 253 (417)
+|+.+
T Consensus 1131 ~~~~~ 1135 (1143)
T KOG4177|consen 1131 EPKSK 1135 (1143)
T ss_pred ccccc
Confidence 99877
No 2
>KOG4177|consensus
Probab=99.79 E-value=6.8e-21 Score=213.48 Aligned_cols=115 Identities=63% Similarity=0.975 Sum_probs=113.1
Q ss_pred cccCCCCcccccccccCCcceEEeccccccchhhhHHHhhhcCCChhhhhhHHHHHhhhhccccceeeEEEEeecccccc
Q psy2358 302 LTDSSGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYREAIHVPFMAKFVVFAKRIEQLE 381 (417)
Q Consensus 302 LsesgGt~~~~weditg~t~l~~~~~~~~ft~~~~aR~wl~~c~~~~~~~~~~t~ly~~~~~vpy~~~f~v~~~~~~~~e 381 (417)
+++.||+.+++|+++||.+++++.++|++|++++++|||+++|+...++..+++.+|+|+++| ||.+|++|+++..+.+
T Consensus 966 ~~~~~~~~~a~~~~~t~~~h~~~~~~~~~f~~~~~~r~~~~~~~~~~e~~~~~~~~~~e~~~~-~~~~~~~f~~~~~~~~ 1044 (1143)
T KOG4177|consen 966 CSITGGVAPAQWEDITGTTHLTFANDCGSFTTNVSARFWLVDCRKTREAVTHATQLYNELIFV-YMAKFVVFAKSNFPNE 1044 (1143)
T ss_pred hcccCCcCcchhhcccceeecccccccceeehhhhhHhhhhhcchhhhhhhHHHHHHHHHHHH-HHHHHhhhccCCcchh
Confidence 588999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ceEEEEEeeccccccccccccceeeeeecccccccC
Q psy2358 382 ARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVELLR 417 (417)
Q Consensus 382 a~lr~~c~t~d~~~~tl~~~e~~~~~a~~~~vevl~ 417 (417)
+.+||||||||+.++||++++.|++.|+++++||++
T Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~d~~v~~ 1080 (1143)
T KOG4177|consen 1045 GRLRCFCMTDDKVDKTLEQQEYFAEVARSRDIEVLG 1080 (1143)
T ss_pred hccccccccCCccCcchhhHHHHHHhhhhhhhhhhc
Confidence 999999999999999999999999999999999975
No 3
>PF00791 ZU5: ZU5 domain; InterPro: IPR000906 This is a domain of unknown function, present in ZO-1 and Unc5-like netrin receptors. It is also found in different variants of ankyrin, which are responsible for attaching integral membrane proteins to cytoskeletal elements.; PDB: 4D8O_A 3G5B_A 3UD2_C 3KBT_D 3UD1_A 3KBU_D 3F59_A 2KXS_A 2KXR_A.
Probab=92.99 E-value=0.036 Score=47.40 Aligned_cols=35 Identities=40% Similarity=0.563 Sum_probs=28.1
Q ss_pred HcCCCceecceEEeecCCCCCCCCeEEEccCCCCC
Q psy2358 25 LLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAA 59 (417)
Q Consensus 25 l~g~~~~~SPlvtvePrrrkFhkPItl~lPlPp~~ 59 (417)
+.......||+|.+.|...+|+|||+|+||--...
T Consensus 54 l~~~e~llSpvv~~gP~gl~f~kPV~L~iPHca~~ 88 (103)
T PF00791_consen 54 LEEGETLLSPVVECGPSGLKFKKPVTLTIPHCAEL 88 (103)
T ss_dssp TTTTEEESSTCEEEESTTEEEEEEEEEEEE--BCC
T ss_pred cCCCCEEeCCEEEEECCCCeECCCEEEEecccccc
Confidence 44556788999999999999999999999976433
No 4
>smart00218 ZU5 Domain present in ZO-1 and Unc5-like netrin receptors. Domain of unknown function.
Probab=91.56 E-value=0.32 Score=42.22 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=36.3
Q ss_pred cCCCceecceEEeecCCCCCCCCeEEEccCCCCCCCCCccCCCCCCCceeEeecccC
Q psy2358 26 LGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITG 82 (417)
Q Consensus 26 ~g~~~~~SPlvtvePrrrkFhkPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~G 82 (417)
.+.+.-.||+|..-|.--+|+|||+|++|-.-... ++.-.++|+.|-.|
T Consensus 55 ~~~e~llSpvV~cGP~G~~f~~PViL~vPHcA~~~--------~~~w~i~l~~~~~~ 103 (104)
T smart00218 55 EEGETLLSPVVECGPHGALFLRPVILEVPHCASLR--------PRDWEIVLLRSENG 103 (104)
T ss_pred CCCcEeeCCeEEECCCCCeEcCCEEEecccccCCC--------CCccEEEEEcccCC
Confidence 34456679999999999999999999999874322 22356787754444
No 5
>KOG4088|consensus
Probab=32.55 E-value=67 Score=29.90 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=18.1
Q ss_pred CceEEEEeecCcccccCCCc
Q psy2358 194 GKSQFVEFAGNLVPVTKSGD 213 (417)
Q Consensus 194 G~~~~~ef~GNlvP~~k~g~ 213 (417)
..++|+|+.|.++|++++++
T Consensus 57 n~~l~Aev~Gk~~PVs~~~d 76 (167)
T KOG4088|consen 57 NIQLTAEVNGKLIPVSISDD 76 (167)
T ss_pred ceEEEEecCCEEEeEEecCc
Confidence 46899999999999999976
No 6
>PRK15183 Vi polysaccharide biosynthesis protein TviA; Provisional
Probab=30.46 E-value=12 Score=33.20 Aligned_cols=18 Identities=44% Similarity=0.881 Sum_probs=14.8
Q ss_pred chhhhHHHhhhcCCChhh
Q psy2358 332 TTTVSARFWLMDCRNVQD 349 (417)
Q Consensus 332 t~~~~aR~wl~~c~~~~~ 349 (417)
-.--+|||||.+|.|...
T Consensus 32 rlmp~a~fwl~~~knvia 49 (143)
T PRK15183 32 RLMPLARFWLTECKNVIA 49 (143)
T ss_pred ccchHHHHHHHhhcceeE
Confidence 345689999999999974
No 7
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.35 E-value=63 Score=30.58 Aligned_cols=73 Identities=21% Similarity=0.433 Sum_probs=42.3
Q ss_pred CceEEEEeecCcccccCCCc--eEEEEEEecccc--cceEEEEEcCCCCCceeEEEEeeccccCCCCCCCCCccccCCCC
Q psy2358 194 GKSQFVEFAGNLVPVTKSGD--QLRLGFRAFREN--RLPFTVRVKDPHADVIGRTLFMREPKVSKGEAPQQPICVSKGEA 269 (417)
Q Consensus 194 G~~~~~ef~GNlvP~~k~g~--ql~f~F~sfreN--rL~~~Vkv~D~~~~~~G~vsF~r~pk~~~~~~~~~~~~~~k~~~ 269 (417)
+.++|+|..|.+.|+.++++ .++..+..=+++ .=...||+=|+..- +=||++.. .|++
T Consensus 57 ~~~LyAeV~Gk~~PVar~~~~nkYQVSW~~e~k~a~sG~y~V~~fDEegy-----aalrKA~R-------------~ged 118 (167)
T PF05404_consen 57 NISLYAEVNGKILPVARSGDTNKYQVSWTEEHKKASSGTYEVKFFDEEGY-----AALRKAQR-------------NGED 118 (167)
T ss_pred CccEEEEECCEEEEEEEcCCCCceEEEEEechhhccCCceEEEEeChHHH-----HHHHHHhh-------------cCCC
Confidence 46899999999999999966 344444332222 33455565565311 11233321 1222
Q ss_pred --CCCceEEEEeecCCC
Q psy2358 270 --PQQPICVLNIVLPDD 284 (417)
Q Consensus 270 --~q~plC~L~ItLP~~ 284 (417)
.-.|+-+.++.-|-.
T Consensus 119 ~~~vkplftV~v~h~Ga 135 (167)
T PF05404_consen 119 VSSVKPLFTVTVNHPGA 135 (167)
T ss_pred cccCCccEEEEEecCcc
Confidence 247888888887744
No 8
>KOG1480|consensus
Probab=21.30 E-value=80 Score=36.50 Aligned_cols=137 Identities=26% Similarity=0.382 Sum_probs=71.6
Q ss_pred CCCceecceEEeecCCCCCCCCeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCccCccccccCceeeeEecCeEE
Q psy2358 27 GNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTARAQWEDVTGTTPLTFVKDCVS 106 (417)
Q Consensus 27 g~~~~~SPlvtvePrrrkFhkPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a~WeDITg~t~l~~~~~~vs 106 (417)
|-...+||||..+|--.-..+||+++++-=-.+. -+.=.+||= -.+.+..|||+--+-.-++.+.|+.
T Consensus 554 ~~etllspivscgpp~~iLtrpVvl~~~hca~~~--------pd~w~~~lk----~~s~~g~we~v~tvgeE~~s~~~y~ 621 (909)
T KOG1480|consen 554 GSETLLSPVVSCGPPDVILTRPVVLTMRHCADPS--------PDNWQITLK----KQEGQGKWEDVVTVGEENLSTNCYC 621 (909)
T ss_pred cchhhhchhhccCCCCceecCCEEeccccccCCC--------cccchhhhh----hhhccccHHhhhhhhcccCccceEE
Confidence 3356789999999988899999999876321111 011223333 2234457999754443333222211
Q ss_pred -EE------eeee-eeEEEecCCchhhHHHHHHHHHHhhcccceeeEEEEEEecCC-ccceEEEEEeeCCcc-cccc---
Q psy2358 107 -FT------TTVS-ARFWLMDCRNVQDSAKMATELYREAIHVPFMAKFVVFAKRIE-QLEARLRVFCMTDDK-EDKT--- 173 (417)
Q Consensus 107 -Ft------ttvs-aRfwL~~c~~~~~~~~~a~~Ly~e~~~vp~ma~fVvf~k~~d-p~e~~L~~~C~tddk-~dkt--- 173 (417)
|+ .|++ +||.|..-..+. .- + =..|+.||.-..- -.|-.|||+|+.|-. ..|.
T Consensus 622 ~le~~achv~t~~L~~~al~g~~~S~---aa--------a---KrlkLavfgp~~cssleY~lRVYCl~dT~~AlkEV~~ 687 (909)
T KOG1480|consen 622 QLEAPACHVLTESLGRYALVGHPNSL---AA--------A---KRLKLAVFGPTECSSLEYNLRVYCVDDTGDALKEVVK 687 (909)
T ss_pred ecccchhHHHHHHHHHHHhcCCchhh---hh--------h---hheeeeeeeccccccccceeEEEEeCCchHHHHHHHH
Confidence 11 1111 333332222111 00 1 1235556665432 337899999999866 3333
Q ss_pred cccccCccccccCCce
Q psy2358 174 LEHQEHFTEVAKSRDV 189 (417)
Q Consensus 174 Le~qe~f~~~a~S~~v 189 (417)
||+|.+-..++-+++.
T Consensus 688 lEr~~GGqLleEPk~L 703 (909)
T KOG1480|consen 688 LERQDGGQLLEEPKDL 703 (909)
T ss_pred HHhhcCcEeeccCccc
Confidence 5655666666655554
No 9
>PF13553 FIIND: Function to find
Probab=20.40 E-value=5.2e+02 Score=26.09 Aligned_cols=138 Identities=15% Similarity=0.214 Sum_probs=87.7
Q ss_pred ccCceeeeEecCeEEEEe--eeeeeEEEecCCchhhHHHHHHHHHHhh-cccceeeEEEEEEecCCccceEEEEEeeCCc
Q psy2358 92 VTGTTPLTFVKDCVSFTT--TVSARFWLMDCRNVQDSAKMATELYREA-IHVPFMAKFVVFAKRIEQLEARLRVFCMTDD 168 (417)
Q Consensus 92 ITg~t~l~~~~~~vsFtt--tvsaRfwL~~c~~~~~~~~~a~~Ly~e~-~~vp~ma~fVvf~k~~dp~e~~L~~~C~tdd 168 (417)
+.+--+.-|+++...++. .++..+..+.=++-...+-+.+.+ +-+ ...|.-..+++|+.. ++.++.|.++=+++|
T Consensus 81 ~~~f~VaH~k~~~~~le~p~~v~~~h~vl~~psfSp~Gvvlr~~-~~~~~~ip~~g~vLly~~~-~~~~~~lhvYlipnd 158 (255)
T PF13553_consen 81 TSLFQVAHFKDEGMELEPPTRVEPTHAVLENPSFSPFGVVLRTI-PAARRFIPIHGLVLLYHRL-HPEEVTLHVYLIPND 158 (255)
T ss_pred hhheEEEEEeCCceEEeccceeceeEEEEcCCCCCcceEEEEEe-eccccccceeeEEEEEeec-CccceEEEEEECCCc
Confidence 334445567888888887 456777777776665422222211 111 237899999999887 777889999999999
Q ss_pred c-ccccccccc---CccccccCCce-eeecCceEEEEeecCcccccCCCceEEEEEEecccccceEEEEEc
Q psy2358 169 K-EDKTLEHQE---HFTEVAKSRDV-EVLEGKSQFVEFAGNLVPVTKSGDQLRLGFRAFRENRLPFTVRVK 234 (417)
Q Consensus 169 k-~dktLe~qe---~f~~~a~S~~v-evlEG~~~~~ef~GNlvP~~k~g~ql~f~F~sfreNrL~~~Vkv~ 234 (417)
. +-|+++++| +|.-+.+...+ .+-.|....+..++++- -.+ +.+.|.+.+-.|+.+-.-|-+.
T Consensus 159 ~~i~kaI~~~E~k~~fv~i~kpp~~~~L~~g~~Y~v~~~~~~E--I~P-~eLel~y~s~~e~q~fsE~y~~ 226 (255)
T PF13553_consen 159 CSIQKAIDEEEKKFQFVRIDKPPPVTPLYMGSRYRVSGSPKLE--IIP-EELELCYRSPGELQFFSEFYVE 226 (255)
T ss_pred HhHHHHHHhhhccCCeEEccCCCCcccccCCCEEEEecCCceE--Eee-ccceeEecCcccccceEEEEec
Confidence 9 677776632 34456666555 56678877776654332 111 4577777777766654444443
No 10
>COG3795 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=19.97 E-value=36 Score=30.67 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=29.6
Q ss_pred EEeccccccchhhhHHHhhhcCCChhhhhhHHHH
Q psy2358 323 TFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATE 356 (417)
Q Consensus 323 ~~~~~~~~ft~~~~aR~wl~~c~~~~~~~~~~t~ 356 (417)
+++++=.+=|.-+++=||+++|++-.+|+.+|..
T Consensus 65 ~viDGPFaEtKEql~Gf~vie~~dLdeA~e~A~~ 98 (123)
T COG3795 65 TVIDGPFAETKEQLAGFYVIEVRDLDEALEWAAR 98 (123)
T ss_pred eecCCCchhHHHHhCcEEEEEeCCHHHHHHHHhc
Confidence 4666666668889999999999999999999987
Done!