Query psy2358
Match_columns 417
No_of_seqs 124 out of 147
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 22:56:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d8o_A Ankyrin-2; ZU5, UPA, de 100.0 7E-95 2.4E-99 762.4 26.9 264 7-292 213-476 (581)
2 3ud1_A Ankyrin-1; beta sandwic 100.0 2.4E-48 8.1E-53 385.7 12.2 131 7-137 196-326 (326)
3 4d8o_A Ankyrin-2; ZU5, UPA, de 100.0 5.4E-36 1.8E-40 315.7 16.6 139 271-417 252-390 (581)
4 3ud1_A Ankyrin-1; beta sandwic 99.8 5.7E-20 1.9E-24 182.7 7.6 255 25-361 58-326 (326)
5 3g5b_A Netrin receptor UNC5B; 96.7 0.0095 3.3E-07 61.0 11.8 141 8-175 38-188 (405)
6 2kxr_A Tight junction protein 91.7 0.072 2.5E-06 45.9 2.2 29 29-57 61-89 (118)
7 2kxs_A Tight junction protein 88.9 0.12 4E-06 46.2 1.2 28 29-56 75-102 (146)
8 3f59_A Ankyrin-1; beta sandwic 85.0 0.66 2.3E-05 42.0 3.8 55 26-92 58-113 (161)
9 3kvq_A Vascular endothelial gr 29.8 21 0.00071 27.0 1.6 44 47-90 1-45 (108)
10 1nzi_A Complement C1S componen 17.4 76 0.0026 26.5 2.8 38 185-222 51-98 (159)
No 1
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=100.00 E-value=7e-95 Score=762.43 Aligned_cols=264 Identities=63% Similarity=1.005 Sum_probs=242.9
Q ss_pred ceeeEEEEEecCHHHHHHHcCCCceecceEEeecCCCCCCCCeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCcc
Q psy2358 7 LTCGKWIAQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTAR 86 (417)
Q Consensus 7 ~~~V~LQaqpv~~~lv~~l~g~~~~~SPlvtvePrrrkFhkPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~ 86 (417)
-..|+|||||||++++++|+|+++++|||||+||||+||||||||+|||||++ +|+++|||||||+||+++
T Consensus 213 ~~~v~lqvqpV~~~~v~~l~~~~~~~Spivt~ep~~~~F~kPvtv~lP~P~~~---------gd~~~lrLL~s~~gg~~~ 283 (581)
T 4d8o_A 213 RIRVGLQAQPMHSELVKKILGNKATFSPIVTLEPRRRKFHKPITMTIPVPKAS---------GDAPTLRLLCSITGGTTP 283 (581)
T ss_dssp CEEEEEEEECCCHHHHHHHHTTSEEECCEEEEESSSCEEEEEEEEEEECCTTC---------CSCTTEEEEEECCCTTSC
T ss_pred ceEEEEEEEecCHHHHHHhhcCCCccCceEEEecCcccccCCeeEEeeCCCCC---------CCCCceEEEeecCCCCCc
Confidence 35799999999999999999999999999999999999999999999999977 478999999999999999
Q ss_pred CccccccCceeeeEecCeEEEEeeeeeeEEEecCCchhhHHHHHHHHHHhhcccceeeEEEEEEecCCccceEEEEEeeC
Q psy2358 87 AQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYREAIHVPFMAKFVVFAKRIEQLEARLRVFCMT 166 (417)
Q Consensus 87 a~WeDITg~t~l~~~~~~vsFtttvsaRfwL~~c~~~~~~~~~a~~Ly~e~~~vp~ma~fVvf~k~~dp~e~~L~~~C~t 166 (417)
|+||||||+|+++++|+|||||||||||||||||+++.++++||++||+|+++||||||||||+|+.||+|++|||||||
T Consensus 284 a~WeDIT~~~~l~~~~~~vsFtttvsarfwL~~c~~~~~~~~~a~~ly~~l~~v~~~~~fvvf~k~~dp~e~~lr~~C~~ 363 (581)
T 4d8o_A 284 AQWEDITGTTPLTFVNECVSFTTNVSARFWLIDCRQIQESVTFASQVYREIICVPYMAKFVVFAKSHDPIEARLRCFCMT 363 (581)
T ss_dssp CCCEECGGGSCCEEETTEEEEEEEECCEEEEEEESCGGGHHHHHHHHHHHHTSCEEEEEEEEEEECCSSSEEEEEEEEEC
T ss_pred ccccccCCceeEEEecceEEEEEeeeeeEEEEcCCCchhhHHHHHHHHHHhhccceeEEEEEEEccCCCchheEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccCccccccCCceeeecCceEEEEeecCcccccCCCceEEEEEEecccccceEEEEEcCCCCCceeEEEE
Q psy2358 167 DDKEDKTLEHQEHFTEVAKSRDVEVLEGKSQFVEFAGNLVPVTKSGDQLRLGFRAFRENRLPFTVRVKDPHADVIGRTLF 246 (417)
Q Consensus 167 ddk~dktLe~qe~f~~~a~S~~vevlEG~~~~~ef~GNlvP~~k~g~ql~f~F~sfreNrL~~~Vkv~D~~~~~~G~vsF 246 (417)
|||+|||||+||+|.++|||++|||+||+|||++|+|||+|++|+|+|++|+||+||||||+|+|||+|.+++++|+|+|
T Consensus 364 ~dk~d~tLe~~e~f~~~a~S~~vevlEG~~~~~~f~Gnl~P~~k~g~~~~f~F~~~~enrl~~~Vkv~d~~~~~~g~v~F 443 (581)
T 4d8o_A 364 DDKVDKTLEQQENFAEVARSRDVEVLEGKPIYVDCFGNLVPLTKSGQHHIFSFFAFKENRLPLFVKVRDTTQEPCGRLSF 443 (581)
T ss_dssp CCSCSCGGGSCTTCEEEEECCCEEEETTCEEEEEEEESEEECC---CCEEEECCTTSCCEEEEEEEESCTTSCSEEEEEE
T ss_pred CcchhhhhhhhhccCccCCCCCeEEecCceEEEEecCCcccccccCceEEEEEEeeecceeeEEEEecCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCCCCCCCccccCCCCCCCceEEEEeecCCCCCCCCCCc
Q psy2358 247 MREPKVSKGEAPQQPICVSKGEAPQQPICVLNIVLPDDIIPETSLP 292 (417)
Q Consensus 247 ~r~pk~~~~~~~~~~~~~~k~~~~q~plC~L~ItLP~~~k~~~~d~ 292 (417)
||+||..++. +|+|||+|||+||++++....++
T Consensus 444 ~r~~r~~~g~-------------~~~~lc~L~i~lP~~~~~~~~~~ 476 (581)
T 4d8o_A 444 MKEPKSTRGL-------------VHQAICNLNITLPIYTKESESDQ 476 (581)
T ss_dssp ESCC--------------------CCCSEEEEEECCCCC-------
T ss_pred ecccccCCCC-------------CCCceeecccccCccccCCcccc
Confidence 9999987654 48999999999999998765543
No 2
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding, cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Probab=100.00 E-value=2.4e-48 Score=385.69 Aligned_cols=131 Identities=51% Similarity=0.911 Sum_probs=127.4
Q ss_pred ceeeEEEEEecCHHHHHHHcCCCceecceEEeecCCCCCCCCeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCcc
Q psy2358 7 LTCGKWIAQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTAR 86 (417)
Q Consensus 7 ~~~V~LQaqpv~~~lv~~l~g~~~~~SPlvtvePrrrkFhkPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~ 86 (417)
-..|+|||||||++++++|+|+++++|||||||||||||||||||+|||||+++|++.|+++|++++|||||||+||+.+
T Consensus 196 ~~~V~lQvqpV~~~~v~~l~g~~~s~SPivtlep~~~~F~kPVTv~lPlPp~~~~~~~~~~~g~~~~lrlLcsi~gg~~~ 275 (326)
T 3ud1_A 196 RVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQ 275 (326)
T ss_dssp CEEEEEEEECCCHHHHHHHHTTSCEECCEEEEESSSCEEEEEEEEEEECCHHHHHCCSSCSCCCC-CEEEEEECCCSTTC
T ss_pred ceEEEEEEEecCHHHHHHHhcCCCccCCeEEEecCCcccCCCeEEEeeCCCCcccccccccCCCCCceEEEEecCCCCCc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCceeeeEecCeEEEEeeeeeeEEEecCCchhhHHHHHHHHHHhh
Q psy2358 87 AQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYREA 137 (417)
Q Consensus 87 a~WeDITg~t~l~~~~~~vsFtttvsaRfwL~~c~~~~~~~~~a~~Ly~e~ 137 (417)
|+||||||+|+|+|+|+||+||||||||||||||+++.|+++||++||+|+
T Consensus 276 ~~WeDiT~~~~l~~~~~~v~Fttt~~ar~wl~dc~~~~~~~~~~~~~y~~~ 326 (326)
T 3ud1_A 276 AQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLLYKEL 326 (326)
T ss_dssp CCCEECBTTBCCEEETTEEEEEEEECCEEEEEECSSGGGHHHHHHHHHHHC
T ss_pred cccccccCceEEEEeccEEEEEecceeeEEeecCCCccchhHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999994
No 3
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-36 Score=315.70 Aligned_cols=139 Identities=60% Similarity=0.971 Sum_probs=124.1
Q ss_pred CCceEEEEeecCCCCCCCCCCcccccccccccccCCCCcccccccccCCcceEEeccccccchhhhHHHhhhcCCChhhh
Q psy2358 271 QQPICVLNIVLPDDIIPETSLPESELTRYQYLTDSSGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDS 350 (417)
Q Consensus 271 q~plC~L~ItLP~~~k~~~~d~~~~~krys~LsesgGt~~~~weditg~t~l~~~~~~~~ft~~~~aR~wl~~c~~~~~~ 350 (417)
+.|+ ||.|.+|+... +. ....-..+.+||+.+++||||||+++|++.++||+|++|++|||||++|+++.++
T Consensus 252 ~kPv-tv~lP~P~~~g----d~---~~lrLL~s~~gg~~~a~WeDIT~~~~l~~~~~~vsFtttvsarfwL~~c~~~~~~ 323 (581)
T 4d8o_A 252 HKPI-TMTIPVPKASG----DA---PTLRLLCSITGGTTPAQWEDITGTTPLTFVNECVSFTTNVSARFWLIDCRQIQES 323 (581)
T ss_dssp EEEE-EEEEECCTTCC----SC---TTEEEEEECCCTTSCCCCEECGGGSCCEEETTEEEEEEEECCEEEEEEESCGGGH
T ss_pred cCCe-eEEeeCCCCCC----CC---CceEEEeecCCCCCcccccccCCceeEEEecceEEEEEeeeeeEEEEcCCCchhh
Confidence 3444 66777777551 11 1112224678999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhccccceeeEEEEeeccccccceEEEEEeeccccccccccccceeeeeecccccccC
Q psy2358 351 AKMATELYREAIHVPFMAKFVVFAKRIEQLEARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVELLR 417 (417)
Q Consensus 351 ~~~~t~ly~~~~~vpy~~~f~v~~~~~~~~ea~lr~~c~t~d~~~~tl~~~e~~~~~a~~~~vevl~ 417 (417)
..+|++||+|+++||||++|+||+|+.||.||+||||||||||+|||||+||+|.++|+|++|||+|
T Consensus 324 ~~~a~~ly~~l~~v~~~~~fvvf~k~~dp~e~~lr~~C~~~dk~d~tLe~~e~f~~~a~S~~vevlE 390 (581)
T 4d8o_A 324 VTFASQVYREIICVPYMAKFVVFAKSHDPIEARLRCFCMTDDKVDKTLEQQENFAEVARSRDVEVLE 390 (581)
T ss_dssp HHHHHHHHHHHTSCEEEEEEEEEEECCSSSEEEEEEEEECCCSCSCGGGSCTTCEEEEECCCEEEET
T ss_pred HHHHHHHHHHhhccceeEEEEEEEccCCCchheEEEEEecCcchhhhhhhhhccCccCCCCCeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 4
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding, cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Probab=99.79 E-value=5.7e-20 Score=182.65 Aligned_cols=255 Identities=25% Similarity=0.378 Sum_probs=142.8
Q ss_pred HcCCCceecceEEeecCCCCCCCCeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCccCccccccCcee---e-eE
Q psy2358 25 LLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTARAQWEDVTGTTP---L-TF 100 (417)
Q Consensus 25 l~g~~~~~SPlvtvePrrrkFhkPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a~WeDITg~t~---l-~~ 100 (417)
|.....-+|+||.+.|...+|++||+|.||--.. +.+....+-++.|-.| .+|.+++-.-. + +.
T Consensus 58 L~~gE~LvS~VlelgP~G~~F~~PV~l~iPh~a~--------~~~~~REivVlrSd~G----~~W~eh~~~~~~~~l~~~ 125 (326)
T 3ud1_A 58 LAEEEGLASRIIALGPTGAQFLSPVIVEIPHFAS--------HGRGDRELVVLRSENG----SVWKEHRSRYGESYLDQI 125 (326)
T ss_dssp CCTTCEECSCEEEEESTTCEEEEEEEEEEECCCS--------CCSSSEEEEEEEESSS----SCCEECCCSSCGGGHHHH
T ss_pred cCCCcccccceEEeccCCccCcccEEEEeccccc--------cCCCceEEEEEEecCC----CcceecccccchhHHHhh
Confidence 3445678899999999999999999999997642 2334567888887766 36887664210 0 00
Q ss_pred ecCeEEEEeeeeeeEEEecCCchhhHHHHHHHHHHhhcccceeeEEEEEEecCCccceEEEEEeeCCcccccccccccCc
Q psy2358 101 VKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYREAIHVPFMAKFVVFAKRIEQLEARLRVFCMTDDKEDKTLEHQEHF 180 (417)
Q Consensus 101 ~~~~vsFtttvsaRfwL~~c~~~~~~~~~a~~Ly~e~~~vp~ma~fVvf~k~~dp~e~~L~~~C~tddk~dktLe~qe~f 180 (417)
-|++ ....+. + +|+... ..+.++++.- -..-+.+. |.. ++.+-
T Consensus 126 l~g~----------------~~~~~s------l-e~~~k~-r~~ri~v~~f--p~~FaVVS--Rl~---------qe~~~ 168 (326)
T 3ud1_A 126 LNGM----------------DEELGS------L-EELEKK-RVCRIITTDF--PLYFVIMS--RLC---------QDYDI 168 (326)
T ss_dssp TTTC----------------CCCCCC------H-HHHHC--CEEEEEEEEC--CSEEEEEE--EEC---------CCCEE
T ss_pred hccc----------------cccccc------h-hhhcCc-eEEEEEecCC--CeEEEEEe--eEE---------eeeee
Confidence 1110 000000 1 222111 2255544431 01122222 221 11111
Q ss_pred cccccCCceeeecCceEEEEeecCcccccCCCceEEEEEEecccc-cceEEEEEcCCC--CCceeE-EEEe----ecccc
Q psy2358 181 TEVAKSRDVEVLEGKSQFVEFAGNLVPVTKSGDQLRLGFRAFREN-RLPFTVRVKDPH--ADVIGR-TLFM----REPKV 252 (417)
Q Consensus 181 ~~~a~S~~vevlEG~~~~~ef~GNlvP~~k~g~ql~f~F~sfreN-rL~~~Vkv~D~~--~~~~G~-vsF~----r~pk~ 252 (417)
.+++ | |-|.....++-|+.|-=.++.+. ++.++|.-.|.. ...+|+ +++- =+|+
T Consensus 169 V~~e---------G--------g~l~Ss~~p~Vq~~FP~ga~~k~~~V~lQvqpV~~~~v~~l~g~~~s~SPivtlep~- 230 (326)
T 3ud1_A 169 IGPE---------G--------GSLKSKLVPLVQATFPENAVTKRVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPR- 230 (326)
T ss_dssp ECTT---------C--------EEEECSSCTTCEEEECTTSSSSCEEEEEEEECCCHHHHHHHHTTSCEECCEEEEESS-
T ss_pred ECCC---------C--------ceEeeccCCCeEEecCCccccCceEEEEEEEecCHHHHHHHhcCCCccCCeEEEecC-
Confidence 1211 2 33333223333444444566665 455666555543 111111 1110 0221
Q ss_pred CCCCCCCCCccccCCCCCCCceEEEEeecCCCCCCCCCC-cccc-cccccccccCCCCcccccccccCCcceEEeccccc
Q psy2358 253 SKGEAPQQPICVSKGEAPQQPICVLNIVLPDDIIPETSL-PESE-LTRYQYLTDSSGTARAQWEDVTGTTPLTFVKDCVS 330 (417)
Q Consensus 253 ~~~~~~~~~~~~~k~~~~q~plC~L~ItLP~~~k~~~~d-~~~~-~krys~LsesgGt~~~~weditg~t~l~~~~~~~~ 330 (417)
.+|. +.|+ |+.|.||+.......+ .+++ ....-.++..||+.+++||||||+++|++.++|++
T Consensus 231 -----------~~~F---~kPV-Tv~lPlPp~~~~~~~~~~~g~~~~lrlLcsi~gg~~~~~WeDiT~~~~l~~~~~~v~ 295 (326)
T 3ud1_A 231 -----------RRKF---HRPI-GLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECAN 295 (326)
T ss_dssp -----------SCEE---EEEE-EEEEECCHHHHHCCSSCSCCCC-CEEEEEECCCSTTCCCCEECBTTBCCEEETTEEE
T ss_pred -----------Cccc---CCCe-EEEeeCCCCcccccccccCCCCCceEEEEecCCCCCccccccccCceEEEEeccEEE
Confidence 1222 3444 5666677542211111 1122 22222347789999999999999999999999999
Q ss_pred cchhhhHHHhhhcCCChhhhhhHHHHHhhhh
Q psy2358 331 FTTTVSARFWLMDCRNVQDSAKMATELYREA 361 (417)
Q Consensus 331 ft~~~~aR~wl~~c~~~~~~~~~~t~ly~~~ 361 (417)
|++|++|||||+||+|+.||++||++||||+
T Consensus 296 Fttt~~ar~wl~dc~~~~~~~~~~~~~y~~~ 326 (326)
T 3ud1_A 296 FTTNVSARFWLSDCPRTAEAVNFATLLYKEL 326 (326)
T ss_dssp EEEEECCEEEEEECSSGGGHHHHHHHHHHHC
T ss_pred EEecceeeEEeecCCCccchhHHHHHHhhcC
Confidence 9999999999999999999999999999985
No 5
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis, developmental protein, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; 2.00A {Rattus norvegicus}
Probab=96.73 E-value=0.0095 Score=61.01 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=92.6
Q ss_pred eeeEEEEEecCHHHHHHHcCCCceecceEEeecCCCCCCCCeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCccC
Q psy2358 8 TCGKWIAQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTARA 87 (417)
Q Consensus 8 ~~V~LQaqpv~~~lv~~l~g~~~~~SPlvtvePrrrkFhkPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a 87 (417)
..|-|.+..= ..-.-.|.+.+.-.||+|+.-|.--+|+|||+|+||---... ...-.++|..+ +...
T Consensus 38 ~eiyl~v~~~-~~~~p~l~~~etllSPvV~cGP~g~~f~~PViL~ipHcA~~~--------~~~W~i~l~~~----~~~~ 104 (405)
T 3g5b_A 38 YDLYLRINKT-ESTLPLSEGSQTVLSPSVTCGPTGLLLCRPVVLTVPHCAEVI--------AGDWIFQLKTQ----AHQG 104 (405)
T ss_dssp EEEEEEECCG-GGGGGGCSTTEEECSCCEEEECSSCCCSSCEEEEEECCBCCS--------SSCCEEEEEEE----SSTT
T ss_pred EEEEEEEecc-cCCCCCCCCCccccCceEEECCCCCccCCCeEEeecCCCCCC--------CCcCEEEEecC----CCCC
Confidence 4555655432 222223445567779999999999999999999999773222 23356888842 3456
Q ss_pred cccccc---C---ceeeeE--ecCeEEEEeeeeeeEEEecCCchhhHHHHHHHHHHhhcccceeeEEEEEEecCCc-cce
Q psy2358 88 QWEDVT---G---TTPLTF--VKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYREAIHVPFMAKFVVFAKRIEQ-LEA 158 (417)
Q Consensus 88 ~WeDIT---g---~t~l~~--~~~~vsFtttvsaRfwL~~c~~~~~~~~~a~~Ly~e~~~vp~ma~fVvf~k~~dp-~e~ 158 (417)
+|+++. + +|+... .++.+.+-|.++.+|-|+==+-.. . +. =.-++.||+-..-+ .+-
T Consensus 105 ~W~ev~~~geE~~~t~~y~qld~~~c~i~~~~lg~y~lvGe~~~~-----------~-a~--Krl~lavF~~~~~~~~~y 170 (405)
T 3g5b_A 105 HWEEVVTLDEETLNTPCYCQLEAKSCHILLDQLGTYVFTGESYSR-----------S-AV--KRLQLAIFAPALCTSLEY 170 (405)
T ss_dssp CEEEEEETTCCCTTCSEEEEECSSEEEEEESSCEEEEEEEECCCT-----------T-CE--EEEEEEEEEESCCCSSEE
T ss_pred CccCccccCCccCCcceEEEecCCcEEEEhhcCcceEEEcccCCc-----------c-ce--eEEEEEEeecCCCCCcee
Confidence 899862 3 344332 377888888899999987422211 1 11 34578899985443 377
Q ss_pred EEEEEeeCCcc-cccccc
Q psy2358 159 RLRVFCMTDDK-EDKTLE 175 (417)
Q Consensus 159 ~L~~~C~tddk-~dktLe 175 (417)
.|||+|+.|.. +.+...
T Consensus 171 ~lRVY~l~dt~~Al~~v~ 188 (405)
T 3g5b_A 171 SLRVYCLEDTPAALKEVL 188 (405)
T ss_dssp EEEEEEEESSHHHHHHHH
T ss_pred EEEEEEeCCChHHHHHHH
Confidence 99999999988 444433
No 6
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=91.75 E-value=0.072 Score=45.93 Aligned_cols=29 Identities=34% Similarity=0.611 Sum_probs=26.2
Q ss_pred CceecceEEeecCCCCCCCCeEEEccCCC
Q psy2358 29 RVAVSPIVTIEPRRRKFHKPITLTIPVPQ 57 (417)
Q Consensus 29 ~~~~SPlvtvePrrrkFhkPItl~lPlPp 57 (417)
..-.||+|..-|.-.+|+|||+|+||-..
T Consensus 61 e~LlSpvV~cGP~G~~F~~PViL~iPHca 89 (118)
T 2kxr_A 61 ETLLSPLVAAGPHGLKFLKPVELRLPHCD 89 (118)
T ss_dssp CCBCSTTEECSSSCCEEEEEEEEEECCCC
T ss_pred cEeeCCeEEECCCCCcCcCCEEEEcCCCC
Confidence 45779999999999999999999999873
No 7
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=88.93 E-value=0.12 Score=46.19 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=25.4
Q ss_pred CceecceEEeecCCCCCCCCeEEEccCC
Q psy2358 29 RVAVSPIVTIEPRRRKFHKPITLTIPVP 56 (417)
Q Consensus 29 ~~~~SPlvtvePrrrkFhkPItl~lPlP 56 (417)
+.-.||+|..-|.-.+|+|||+|+||-.
T Consensus 75 etLlSPvV~CGP~G~~F~kPViL~iPHc 102 (146)
T 2kxs_A 75 ETLLSPLVMCGPHGLKFLKPVELRLPHC 102 (146)
T ss_dssp CBCCSCCEEESSSSEEEEEEEEEEECCC
T ss_pred cEeeCceEEECCCCCcCcCCEEEEcCcC
Confidence 3467999999999999999999999976
No 8
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=85.04 E-value=0.66 Score=41.99 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=38.4
Q ss_pred cCC-CceecceEEeecCCCCCCCCeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCccCccccc
Q psy2358 26 LGN-RVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTARAQWEDV 92 (417)
Q Consensus 26 ~g~-~~~~SPlvtvePrrrkFhkPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a~WeDI 92 (417)
+++ .+..|+||-+.|...+|++||+|.||--.+. .+....+-+|.|-+| .+|.+.
T Consensus 58 L~egE~LlSrvlElgP~G~~F~~PV~leiPh~a~~--------~~~eREvvvlrSdnG----~sW~eh 113 (161)
T 3f59_A 58 LAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASH--------GRGDRELVVLRSENG----SVWKEH 113 (161)
T ss_dssp CCTTCEECSCEEEEESTTCEEEEEEEEEEECC----------------CEEEEEESSS----SCCEEC
T ss_pred CCCCccccCceeeecCCCccccCCEEEeccccccC--------CCCceEEEEEECCCC----CCcccc
Confidence 344 4677999999999999999999999977533 334456888887665 457654
No 9
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=29.81 E-value=21 Score=26.99 Aligned_cols=44 Identities=16% Similarity=0.337 Sum_probs=16.5
Q ss_pred CCeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCccC-ccc
Q psy2358 47 KPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTARA-QWE 90 (417)
Q Consensus 47 kPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a-~We 90 (417)
|+|+|....||.......+.....-..+.|-|.+.|...+. .|.
T Consensus 1 ~~~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~ 45 (108)
T 3kvq_A 1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWF 45 (108)
T ss_dssp ----------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEE
T ss_pred CceeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEE
Confidence 34566666666555433222111235689999998764333 675
No 10
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=17.42 E-value=76 Score=26.53 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=23.7
Q ss_pred cCCceeeecCceEEEEeecCcccc----------cCCCceEEEEEEec
Q psy2358 185 KSRDVEVLEGKSQFVEFAGNLVPV----------TKSGDQLRLGFRAF 222 (417)
Q Consensus 185 ~S~~vevlEG~~~~~ef~GNlvP~----------~k~g~ql~f~F~sf 222 (417)
..+-|+|.+|.+....|.|+..|. .-.+.++.+.|++-
T Consensus 51 ~~D~l~i~dg~~~~~~~CG~~~~~~~~~P~~~~~~S~~n~l~v~F~Sd 98 (159)
T 1nzi_A 51 AYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSD 98 (159)
T ss_dssp CSSEEEEEC---CCEEECSEECCCCSSCCCSEEEEESSSEEEEEEEEC
T ss_pred CCCEEEEEeCCchhcccCCCCCCCcccCCcceeEEecCCeEEEEEEec
Confidence 357799999999888999988752 22245555666553
Done!