Query psy2358
Match_columns 417
No_of_seqs 124 out of 147
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 22:56:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2358.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2358hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jmfa1 b.72.1.1 (A:521-553) U 21.2 12 0.00084 23.6 0.4 30 54-91 2-31 (33)
2 d1gl4b_ b.1.1.4 (B:) Perlecan 17.4 27 0.002 24.3 1.9 37 48-91 1-39 (89)
3 d2fdbp2 b.1.1.4 (P:2252-2360) 14.7 34 0.0025 24.4 1.9 37 46-90 3-40 (109)
4 d2nxyb2 b.1.1.3 (B:1098-1181) 13.5 50 0.0036 22.9 2.4 18 185-202 5-22 (84)
5 d1jmqa_ b.72.1.1 (A:) Yap65 ww 13.3 34 0.0025 22.8 1.3 31 53-91 7-37 (46)
6 d1tk7a1 b.72.1.1 (A:1-45) Supp 12.0 24 0.0017 23.6 0.2 10 54-63 12-21 (45)
7 d1wj4a_ d.15.1.2 (A:) Hypothet 11.9 1.1E+02 0.0081 23.5 4.4 20 268-287 37-56 (124)
8 d2qqma3 b.23.1.1 (A:156-263) M 11.6 1.2E+02 0.0088 21.3 4.3 36 186-221 53-94 (108)
9 d1tnna_ b.1.1.4 (A:) Titin {Hu 11.6 47 0.0034 23.3 1.8 18 185-202 5-22 (91)
10 d2fqma1 d.378.1.1 (A:107-171) 11.2 34 0.0025 24.5 0.8 15 333-347 39-54 (65)
No 1
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=21.19 E-value=12 Score=23.64 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=16.7
Q ss_pred cCCCCCCCCCccCCCCCCCceeEeecccCCCccCcccc
Q psy2358 54 PVPQAANKGMINQYSGDAPTLRLLCSITGGTARAQWED 91 (417)
Q Consensus 54 PlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a~WeD 91 (417)
|||++|++.... + =| .+-|.+-+...+|+|
T Consensus 2 pLP~GWe~~~d~--~-----G~-~Yyinh~t~~T~w~~ 31 (33)
T d2jmfa1 2 PLPPGWEIRYTA--A-----GE-RFFVDHNTRRTTFED 31 (33)
T ss_dssp CCCTTEEEEECT--T-----SC-EEEEETTTCCEESSC
T ss_pred ccCCCeeEEECC--C-----CC-EEEEECCCCcEecCC
Confidence 788888854321 1 12 233455566667775
No 2
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.44 E-value=27 Score=24.28 Aligned_cols=37 Identities=16% Similarity=0.473 Sum_probs=23.7
Q ss_pred CeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCccC--cccc
Q psy2358 48 PITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTARA--QWED 91 (417)
Q Consensus 48 PItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a--~WeD 91 (417)
|+++++.-|.... -..| .++.|-|.+.||.++. .|.-
T Consensus 1 P~~v~~~~p~~~~-----v~~G--~~~~l~C~~~~~~p~~~v~W~k 39 (89)
T d1gl4b_ 1 PIMVTVEEQRSQS-----VRPG--ADVTFICTAKSKSPAYTLVWTR 39 (89)
T ss_dssp CEEEEECSCCEEE-----ECTT--CCEEEEEEEEESSSCCEEEEEE
T ss_pred CCEEEEcCCCeEE-----EeCC--CcEEEEEEccCCCCCCEEEEec
Confidence 6777777664322 1122 4699999999886544 7863
No 3
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Probab=14.67 E-value=34 Score=24.36 Aligned_cols=37 Identities=24% Similarity=0.563 Sum_probs=23.8
Q ss_pred CCCeEEEccCCCCCCCCCccCCCCCCCceeEeecccCCCccC-ccc
Q psy2358 46 HKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGTARA-QWE 90 (417)
Q Consensus 46 hkPItl~lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a-~We 90 (417)
|||+-. .++|.+.+- ..| +++.|-|.+.|...+. +|.
T Consensus 3 ~~P~i~-~~~P~~~tv-----~~G--~~v~l~C~v~g~P~p~v~W~ 40 (109)
T d2fdbp2 3 HRPILQ-AGLPANAST-----VVG--GDVEFVCKVYSDAQPHIQWI 40 (109)
T ss_dssp SCCEEC-TTCSCCEEE-----CTT--CCEEEEEEEECSSCCEEEEE
T ss_pred CCCEEc-CCCCCCEEE-----ecC--CcEEEEEEEEEcCCCeEEEE
Confidence 677764 566755441 122 4799999999874443 784
No 4
>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.49 E-value=50 Score=22.93 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.4
Q ss_pred cCCceeeecCceEEEEee
Q psy2358 185 KSRDVEVLEGKSQFVEFA 202 (417)
Q Consensus 185 ~S~~vevlEG~~~~~ef~ 202 (417)
.+.++.|+||+.+-+.|.
T Consensus 5 ~~~~~~v~~G~~~~L~C~ 22 (84)
T d2nxyb2 5 ANSDTHLLQGQSLTLTLE 22 (84)
T ss_dssp ESCSSCEETTCCEEEEEE
T ss_pred CCCCeEEECCCeEEEEEE
Confidence 355789999999999998
No 5
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.28 E-value=34 Score=22.80 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=18.6
Q ss_pred ccCCCCCCCCCccCCCCCCCceeEeecccCCCccCcccc
Q psy2358 53 IPVPQAANKGMINQYSGDAPTLRLLCSITGGTARAQWED 91 (417)
Q Consensus 53 lPlPp~~~k~~~~~~~~~~~~LrLLcsi~Ggt~~a~WeD 91 (417)
.|||++|+++.-. .| | .+-|..-+...+|+|
T Consensus 7 ~~LP~GWe~~~d~--~G-----~-~Yyinh~t~~T~w~~ 37 (46)
T d1jmqa_ 7 VPLPAGWEMAKTS--SG-----Q-RYFKNHIDQTTTWQD 37 (46)
T ss_dssp CCCCTTBCCBCCS--SC-----C-CBEEETTTTEEESSC
T ss_pred CCCCCCceEEECC--CC-----C-EEEEECCCCCEecCC
Confidence 5899999965422 11 1 234445566668886
No 6
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=12.02 E-value=24 Score=23.56 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=7.0
Q ss_pred cCCCCCCCCC
Q psy2358 54 PVPQAANKGM 63 (417)
Q Consensus 54 PlPp~~~k~~ 63 (417)
|||++|++..
T Consensus 12 pLP~GWe~~~ 21 (45)
T d1tk7a1 12 PLPDGWEKKI 21 (45)
T ss_dssp SSSSSCCEEE
T ss_pred CCCCCceEEE
Confidence 7888887543
No 7
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.92 E-value=1.1e+02 Score=23.48 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.2
Q ss_pred CCCCCceEEEEeecCCCCCC
Q psy2358 268 EAPQQPICVLNIVLPDDIIP 287 (417)
Q Consensus 268 ~~~q~plC~L~ItLP~~~k~ 287 (417)
.+.-.|.|+|-|+||+..+.
T Consensus 37 ~d~~~p~~~l~iRlPdG~r~ 56 (124)
T d1wj4a_ 37 IDVNGPKAQLMLRYPDGKRE 56 (124)
T ss_dssp CCCSSCEEEEEEECTTSCEE
T ss_pred CCCCCCceEEEEECCCCCEE
Confidence 35568999999999997654
No 8
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.63 E-value=1.2e+02 Score=21.26 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCceeeecCc----eEEEEeecCcccc--cCCCceEEEEEEe
Q psy2358 186 SRDVEVLEGK----SQFVEFAGNLVPV--TKSGDQLRLGFRA 221 (417)
Q Consensus 186 S~~vevlEG~----~~~~ef~GNlvP~--~k~g~ql~f~F~s 221 (417)
.+-++|.+|. ++..+|.|+..|. .-.+.++.+.|++
T Consensus 53 ~D~l~i~dg~~~~~~~~~~~Cg~~~p~~~~S~~n~l~i~F~S 94 (108)
T d2qqma3 53 YDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYT 94 (108)
T ss_dssp SSEEEEESSSTTTSCEEEEECTTCCCCEEEECSSEEEEEEEC
T ss_pred ccEEEEEeccccCCccccEEeeccCCCCEEEcCCEEEEEEEE
Confidence 3556776653 5667888887653 2335677777776
No 9
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}
Probab=11.59 E-value=47 Score=23.27 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.6
Q ss_pred cCCceeeecCceEEEEee
Q psy2358 185 KSRDVEVLEGKSQFVEFA 202 (417)
Q Consensus 185 ~S~~vevlEG~~~~~ef~ 202 (417)
+.+++.+.+|+.+.++|.
T Consensus 5 ~P~~~~v~~G~~~~l~C~ 22 (91)
T d1tnna_ 5 KPRSMTVYEGESARFSCD 22 (91)
T ss_dssp CCCCEECSSSSCCCEEEE
T ss_pred CCcCEEEeCCCcEEEEEE
Confidence 447899999999999986
No 10
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=11.19 E-value=34 Score=24.51 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=11.6
Q ss_pred hhhhHHHh-hhcCCCh
Q psy2358 333 TTVSARFW-LMDCRNV 347 (417)
Q Consensus 333 ~~~~aR~w-l~~c~~~ 347 (417)
.-+||+|| |.+|.-.
T Consensus 39 v~qSakyWNlaEC~i~ 54 (65)
T d2fqma1 39 VVQSAKHWNLAECTFE 54 (65)
T ss_dssp HHHHHHHSCGGGSEEE
T ss_pred HHhhhcccchhheEEE
Confidence 35799999 8999643
Done!