RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2358
(417 letters)
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding;
2.20A {Homo sapiens}
Length = 581
Score = 273 bits (698), Expect = 2e-86
Identities = 166/281 (59%), Positives = 198/281 (70%), Gaps = 22/281 (7%)
Query: 14 AQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPT 73
AQP+ +++ K+LGN+ SPIVT+EPRRRKFHKPIT+TIPVP+ SGDAPT
Sbjct: 220 AQPMHSELVKKILGNKATFSPIVTLEPRRRKFHKPITMTIPVPK---------ASGDAPT 270
Query: 74 LRLLCSITGGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATEL 133
LRLLCSITGGT AQWED+TGTTPLTFV +CVSFTT VSARFWL+DCR +Q+S A+++
Sbjct: 271 LRLLCSITGGTTPAQWEDITGTTPLTFVNECVSFTTNVSARFWLIDCRQIQESVTFASQV 330
Query: 134 YREAIHVPFMAKFVVFAKRIEQLEARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVEVLE 193
YRE I VP+MAKFVVFAK + +EARLR FCMTDDK DKTLE QE+F EVA+SRDVEVLE
Sbjct: 331 YREIICVPYMAKFVVFAKSHDPIEARLRCFCMTDDKVDKTLEQQENFAEVARSRDVEVLE 390
Query: 194 GKSQFVEFAGNLVPVTKSGDQLRLGFRAFRENRLPFTVRVKDPHADVIGRTLFMREPKVS 253
GK +V+ GNLVP+TKSG F AF+ENRLP V+V+D + GR FM+EPK +
Sbjct: 391 GKPIYVDCFGNLVPLTKSGQHHIFSFFAFKENRLPLFVKVRDTTQEPCGRLSFMKEPKST 450
Query: 254 KGEAPQQPICVSKGEAPQQPICVLNIVLPDDIIPETSLPES 294
+G Q IC LNI LP S E
Sbjct: 451 RGL-------------VHQAICNLNITLPIYTKESESDQEQ 478
Score = 133 bits (336), Expect = 2e-34
Identities = 79/113 (69%), Positives = 94/113 (83%)
Query: 304 DSSGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYREAIH 363
+ GT AQWED+TGTTPLTFV +CVSFTT VSARFWL+DCR +Q+S A+++YRE I
Sbjct: 277 ITGGTTPAQWEDITGTTPLTFVNECVSFTTNVSARFWLIDCRQIQESVTFASQVYREIIC 336
Query: 364 VPFMAKFVVFAKRIEQLEARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVELL 416
VP+MAKFVVFAK + +EARLR FCMTDDK DKTLE QE+F EVA+SRDVE+L
Sbjct: 337 VPYMAKFVVFAKSHDPIEARLRCFCMTDDKVDKTLEQQENFAEVARSRDVEVL 389
Score = 36.5 bits (83), Expect = 0.016
Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 9/128 (7%)
Query: 13 IAQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPV---PQAANKGMINQYSG 69
+ + ++ S ++ + P +F P+ + IP + + ++ S
Sbjct: 63 LVKRHRLATMPPMVEGEGLASRLIEVGPSGAQFLGPVIVEIPHFAALRGKERELVVLRSE 122
Query: 70 DAPTLRLLCSITGGTA-----RAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQ 124
+ + + E + L + C T F ++ R Q
Sbjct: 123 NGDSWKEHFCDYTEDELNEILNGMDEVLDSPEDLEKKRICRIITRDFPQYFAVV-SRIKQ 181
Query: 125 DSAKMATE 132
DS + E
Sbjct: 182 DSNLIGPE 189
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding,
cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Length = 326
Score = 174 bits (443), Expect = 2e-51
Identities = 67/123 (54%), Positives = 86/123 (69%)
Query: 14 AQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPT 73
AQP+P ++ KLLGN+ SPIVT+EPRRRKFH+PI L IP+P + + GD +
Sbjct: 203 AQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTS 262
Query: 74 LRLLCSITGGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATEL 133
LRLLCS+ GGT +AQWED+TGTT L + +C +FTT VSARFWL DC ++ AT L
Sbjct: 263 LRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLL 322
Query: 134 YRE 136
Y+E
Sbjct: 323 YKE 325
Score = 86.4 bits (213), Expect = 6e-19
Identities = 30/56 (53%), Positives = 38/56 (67%)
Query: 305 SSGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYRE 360
GT +AQWED+TGTT L + +C +FTT VSARFWL DC ++ AT LY+E
Sbjct: 270 IGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVNFATLLYKE 325
Score = 37.1 bits (85), Expect = 0.009
Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 13 IAQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQA---ANKGMINQYSG 69
+ +P L S I+ + P +F P+ + IP + ++ ++ S
Sbjct: 46 LVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSE 105
Query: 70 DAPTLRLLCSITGGTAR----AQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQD 125
+ + S G + ++ G+ K TT ++++ R QD
Sbjct: 106 NGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQD 165
Query: 126 SAKMATE 132
+ E
Sbjct: 166 YDIIGPE 172
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis,
developmental protein, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; 2.00A {Rattus
norvegicus}
Length = 405
Score = 63.0 bits (152), Expect = 4e-11
Identities = 40/295 (13%), Positives = 75/295 (25%), Gaps = 46/295 (15%)
Query: 25 LLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAPTLRLLCSITGGT 84
G++ +SP VT P +P+ LT+P + + + +
Sbjct: 54 SEGSQTVLSPSVTCGPTGLLLCRPVVLTVP------------HCAEVIAGDWIFQLKTQA 101
Query: 85 ARAQWEDVTGTTPLTFV--------KDCVSFTTTVSARFWLMDCRNVQDSAKMATELYRE 136
+ WE+V T + + + K
Sbjct: 102 HQGHWEEVVTLDEETLNTPCYCQLEAKSCHILLDQLGTYVFTGESYSRSAVK-------- 153
Query: 137 AIHVPFMAKFVVFAKRIEQ-LEARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVEVLEGK 195
+ +FA + LE LRV+C+ D T + E+ ++ L +
Sbjct: 154 ------RLQLAIFAPALCTSLEYSLRVYCLED-----TPAALKEVLELERTLG-GYLVEE 201
Query: 196 SQFVEFAGNLVPVTKSGDQLRLGFRAFRE--NRLPFTVRVKDPHADVIGRTLFMREPKVS 253
+ + F + + S + + + F E
Sbjct: 202 PKPLLFKDSYHNLRLSLHDIPHAHWRSKLLAKYQEIPFYHVWNGSQKALHCTFTLERHSL 261
Query: 254 KGEAPQQPICVSKGEAPQQPICVLNIVLPDDIIPETSLPESELTRYQYLTDSSGT 308
+CV + E Q + P SL T G
Sbjct: 262 ASTEFTCKVCVRQVEGEGQIF---QLHTTLAETPAGSLDALCSAPGNAATTQLGP 313
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 6e-07
Identities = 50/356 (14%), Positives = 104/356 (29%), Gaps = 99/356 (27%)
Query: 115 FWLM--DCRNVQDSAKMATELYREAIHVPFMAKFVVFAK---RIEQLEARLRVFCMT--- 166
FWL +C + + +M +L + I + ++ + RI ++A LR +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 167 -------DDKEDKTLEHQEHFTEVAK----SRDVEVLEGKSQFVEFAGNLVPVTKSGDQL 215
+ ++ + F K +R +V +F S D
Sbjct: 244 ENCLLVLLNVQNA--KAWNAFNLSCKILLTTRFKQV-------TDFLSAATTTHISLDHH 294
Query: 216 RLGF------RAF------RENRLPFTVRVKDP-HADVIGRTLFMREPKVSKGEAPQQPI 262
+ R LP V +P +I +R+ + + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE--SIRDGL-ATWDNWKHVN 351
Query: 263 CVSKGEAPQQPICVLNIVLPDD---------IIPE-TSLPESELTRYQYLTDSSGTARAQ 312
C + + VL P + + P +P L+
Sbjct: 352 CDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTILLSLI------------- 395
Query: 313 WEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMAT----ELYREAIHVPFMA 368
W DV + + V ++ L++ + K +T +Y E + V
Sbjct: 396 WFDVIKSDVMVVVNKLHKYS--------LVEKQP-----KESTISIPSIYLE-LKVKLEN 441
Query: 369 KFVVFAKRIEQLEARLRVFCMTD---DKEDK----TLEHQEHFTEVAKSRDVELLR 417
++ + ++ + F D D+ + H H + + L R
Sbjct: 442 EYALHRSIVDHYNIP-KTFDSDDLIPPYLDQYFYSHIGH--HLKNIEHPERMTLFR 494
Score = 45.6 bits (107), Expect = 3e-05
Identities = 59/409 (14%), Positives = 115/409 (28%), Gaps = 158/409 (38%)
Query: 100 FVKDCVSFTTTVSARFWLMDCRNVQDSAK--MATELYREAIHVPFMAKFVVFAKRIEQLE 157
FV + DC++VQD K ++ E I +
Sbjct: 29 FVDN--------------FDCKDVQDMPKSILSKEEIDHIIMSK---------DAVSGT- 64
Query: 158 ARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVEVLEGKSQ------------FVEFAGNL 205
LR+F K+++ + + F E + + L + ++E L
Sbjct: 65 --LRLFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 206 -----------VPVTKSGDQLR-----------------LGF----------RAFR-ENR 226
V + +LR LG +++ + +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 227 LPFTV------RVKDPHADV-IGRTLFMR-----EPKVSKGEAPQQPICVSKGE------ 268
+ F + P + + + L + + + I + E
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 269 APQQPICVLNIVLPDDI-IPET---------SLPESELTRYQYLTDSSGTARAQWEDVTG 318
+ C+L VL ++ + L TR++ +TD A
Sbjct: 240 SKPYENCLL--VL-LNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAAT-------- 285
Query: 319 TTPLTFVKDCVSFTTTVSARF---WLMDCRNVQDSAKMATELYREA--IHVPFMAKFVVF 373
TT ++ ++ T +L DCR +L RE + P +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYL-DCR--------PQDLPREVLTTN-PRRLS--II 333
Query: 374 AKRIEQLEAR----LRVFCMTDDKEDKTL----------EHQEHFTEVA 408
A+ I A V C DK + E+++ F ++
Sbjct: 334 AESIRDGLATWDNWKHVNC---DKLTTIIESSLNVLEPAEYRKMFDRLS 379
Score = 34.1 bits (77), Expect = 0.10
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 31/120 (25%)
Query: 299 YQYLTDSSGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAK--MATE 356
+ ++ +G + Q++D+ FV + DC++VQD K ++ E
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDN--------------FDCKDVQDMPKSILSKE 49
Query: 357 LYREAIHVPFMAKFVVFAKRIEQLEARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVELL 416
I + LR+F K+++ + + F E + + L
Sbjct: 50 EIDHIIMSK---------DAVSGT---LRLFWTLLSKQEEMV---QKFVEEVLRINYKFL 94
Score = 30.6 bits (68), Expect = 1.2
Identities = 44/270 (16%), Positives = 71/270 (26%), Gaps = 61/270 (22%)
Query: 176 HQEHF-TEVA----KSRD-VEVLEGKSQFVE-FAGNLVPVTKSGDQLRLGFRAFRENRLP 228
H H E + +D + V E FV+ F V D + + +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDA--FVDNFDCKDVQ-----DMPK---SILSKEEID 52
Query: 229 FTVRVKDPHADVIGRTLFMREPKVSKGEAPQQPICVSKGEAPQQPICVLNIVLPDDIIPE 288
+ KD + TL + +SK E Q V + L I E
Sbjct: 53 HIIMSKDA----VSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKF------LMSPIKTE 101
Query: 289 TSLPESELTRYQYLTDSSGTARAQWEDVTGTTPLTFVKDCVSFTTTVSA-RFWLMDCRNV 347
P Y D F K VS R L++ R
Sbjct: 102 QRQPSMMTRMYIE-----------QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 348 QD--------SAK--MATELYREAIHVPFMAKFVVF------AKRIEQLEARLRVFCMTD 391
++ S K +A ++ M F +F E + L+
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 392 DKEDKTLEHQ----EHFTEVAKSRDVELLR 417
D + + ++ LL+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 61/365 (16%), Positives = 105/365 (28%), Gaps = 128/365 (35%)
Query: 11 KWIAQPIPTDITAKLLGNRVAVS-PIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSG 69
+W+ P T LL + +S P+ I + Q A+ + + G
Sbjct: 217 EWLENPSNTPDKDYLL--SIPISCPL-------------IGVI----QLAHYVVTAKLLG 257
Query: 70 DAPTLRLLCSITGGTARAQ-------------WEDVTGTTPLTFVKDCVSFTTTVSARFW 116
P L + G T +Q WE F S ++ F+
Sbjct: 258 FTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWES--------FFV---SVRKAITVLFF 305
Query: 117 LMDCRNVQDSA---KMATELYREAIH----VP-FMAKFVVFAKRIEQLEARLRVFCMTDD 168
+ R ++ + + +++ VP M + EQ++ + +
Sbjct: 306 I-GVR-CYEAYPNTSLPPSILEDSLENNEGVPSPM--LSISNLTQEQVQDYV-------N 354
Query: 169 KEDKTLEHQEHFTEVAKSRDVEVLEGKSQFVEFAGN---L---------VPVTKSGDQLR 216
K + L + E++ ++ G V +G L DQ R
Sbjct: 355 KTNSHLPAGKQ-VEIS------LVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 217 LGF--RAFR-ENR-LPFTVRVKDP-H-------ADVIGRTLFMREPKVS-KGEAPQQPI- 262
+ F R + NR LP P H +D+I + L VS + Q P+
Sbjct: 407 IPFSERKLKFSNRFLPVAS----PFHSHLLVPASDLINKDLVKNN--VSFNAKDIQIPVY 460
Query: 263 CVSKGEAPQQPICVLNIVLPDDIIPETSLPESELTRYQYLTDSSGTARAQWEDVTGTTP- 321
G + L I + D +WE T
Sbjct: 461 DTFDGSDLRV--------LSGSISER-------------IVDCIIRLPVKWETTTQFKAT 499
Query: 322 --LTF 324
L F
Sbjct: 500 HILDF 504
Score = 47.0 bits (111), Expect = 1e-05
Identities = 61/384 (15%), Positives = 104/384 (27%), Gaps = 140/384 (36%)
Query: 91 DVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMATELYREAIHVPFMAKFVVFA 150
D T PLT + V + +A++L +E F
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFF-----------IASQL-QEQ-----------FN 38
Query: 151 KRIEQLEARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVEVLEGKSQFVEFAGNLVPVTK 210
K + + D E T E++ +F+ + +LV +K
Sbjct: 39 KILPEPTEGF-----AADDEPTT--------------PAELV---GKFLGYVSSLVEPSK 76
Query: 211 SGDQ---LRLGFRAFRENRLPFTVRVKDPHADVIGRTLFMREPKVSKGEAPQQPICVSKG 267
G L L F L D HA + + L + + K + + +
Sbjct: 77 VGQFDQVLNLCLTEFENCYL----EGNDIHA-LAAKLLQENDTTLVK----TKELIKNYI 127
Query: 268 EAPQQPICVLNIVLPDDIIPETSLPESELTRYQYLTDSSGTAR--AQ----------WED 315
A + P S L R G A+ A +E+
Sbjct: 128 TA----RIMAK-------RPFDKKSNSALFR----AVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 316 V--TGTTPLTFVKDCVS-------------------FTTTVSARFWLMDCRNVQDSAKMA 354
+ T V D + FT ++ WL + N D +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 355 TELYREAIHVPF-----MAKFVVFAKRI----EQLEARLR-------------VFCMTDD 392
+ I P +A +VV AK + +L + L+ TD
Sbjct: 233 S----IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 393 KEDKTLEHQEHFTEVAKSRDVELL 416
E F + + + +L
Sbjct: 289 WES--------FFVSVR-KAITVL 303
Score = 30.8 bits (69), Expect = 1.1
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 24/116 (20%)
Query: 302 LTDSSGTARAQWE-------DVTGTTPLTFVKDCVSFTTTVSARFWLMDCRNVQDSAKMA 354
L +S A+ W D G + L V + ++ F + +
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN---NPVNLTIHFGGEKGKRI------- 1684
Query: 355 TELYREAIHVPFMAKFVVFAKRIEQLEARLRVFCMTDDKE--DKTLEHQEHFTEVA 408
E Y I + + K +++ + +K T FT+ A
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-----QFTQPA 1735
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR
{Homo sapiens}
Length = 118
Score = 34.6 bits (79), Expect = 0.012
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 13 IAQPIPTDITAKLL------------GNRVAVSPIVTIEPRRRKFHKPITLTIP 54
I + + +I K+ +SP+V P KF KP+ L +P
Sbjct: 33 IPEGVEQEIYFKVCRDNSILPPLDKEKGETLLSPLVAAGPHGLKFLKPVELRLP 86
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched
ZO-associated protein; beta-barrel, protein binding; NMR
{Homo sapiens}
Length = 146
Score = 33.5 bits (76), Expect = 0.043
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 13 IAQPIPTDITAKLL------------GNRVAVSPIVTIEPRRRKFHKPITLTIP 54
I + + +I K+ +SP+V P KF KP+ L +P
Sbjct: 47 IPEGVEQEIYFKVCRDNSILPPLDKEKGETLLSPLVMCGPHGLKFLKPVELRLP 100
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_G* 3hs0_B*
Length = 252
Score = 34.0 bits (77), Expect = 0.059
Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 24/160 (15%)
Query: 141 PFMAKFVV--FAKRIEQLEARLRVF--CMTDDKEDKTLEHQEHFTEVAKS-----RDVEV 191
F + + EQ+E R + D L + F + + +
Sbjct: 81 VFFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPI 140
Query: 192 LEGKSQFVEFAGNLVPVTKSGDQLRLGFRAFRENRLPFTVRVKDP-HADVIGRTLFMREP 250
S+ V F + + + V++ +D + + L +
Sbjct: 141 KALSSRAVPFVIVPLEQG--------------LHDVEIKASVQEALWSDGVRKKLKVVPE 186
Query: 251 KVSKGEAPQQPICVSKGEAPQQPICVLNIVLPDDIIPETS 290
V K + + V+ DD +P+T
Sbjct: 187 GVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDDRVPDTE 226
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.17
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 151 KRIEQLEARLRVFCMTDDKE-----DKTLE 175
+ +++L+A L+++ DD T+E
Sbjct: 20 QALKKLQASLKLY--ADDSAPALAIKATME 47
Score = 31.8 bits (71), Expect = 0.17
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 375 KRIEQLEARLRVFCMTDDKE-----DKTLE 399
+ +++L+A L+++ DD T+E
Sbjct: 20 QALKKLQASLKLY--ADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 2.5
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 57 QAANK--GMINQYSGD-APTLRLLCSI 80
QA K + Y+ D AP L + ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P
usage, ANK repeat, cytoskeleton, disease mutation; 2.00A
{Homo sapiens} PDB: 3kbt_C 3kbu_C
Length = 161
Score = 32.0 bits (72), Expect = 0.19
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 13 IAQPIPTDITAKLLGNRVAVSPIVTIEPRRRKFHKPITLTIPVPQAANKGMINQYSGDAP 72
+ +P L S I+ + P +F P+ + IP + +G
Sbjct: 46 LVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRE------- 98
Query: 73 TLRLLCSITGGTARAQWEDVTGTTPLTFVKDCV 105
L +L S G W++ +++ +
Sbjct: 99 -LVVLRSENGSV----WKEHRSRYGESYLDQIL 126
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 0.54
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 10/69 (14%)
Query: 175 EHQEHFTEVAKSRDVEVLEGKS----QFVEFAGNLVPVTKSGD------QLRLGFRAFRE 224
E +E EV D+E E QF G+ V + + + +L G +
Sbjct: 918 EKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIP 977
Query: 225 NRLPFTVRV 233
L F V
Sbjct: 978 KALRFDRLV 986
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen,
carbohydrate-binding module, sugar-binding protein; HET:
GAL; 2.25A {Clostridium perfringens}
Length = 143
Score = 29.0 bits (65), Expect = 1.3
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 11/59 (18%)
Query: 57 QAANKGMINQYSGDAPTLRLLCSITGGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARF 115
+ N G I +Y I + GT + V+F + + A
Sbjct: 74 TSGNNGFITKYE-----------IHAINNGVETLVAEGTWEENNLVKTVTFDSPIDAEE 121
Score = 27.5 bits (61), Expect = 4.2
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 285 IIPETSLPESELTRYQYLTDSSGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARF 339
I P TS +T+Y+ + GT + V+F + + A
Sbjct: 70 ITPRTSGNNGFITKYEIHA---INNGVETLVAEGTWEENNLVKTVTFDSPIDAEE 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.399
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,313,790
Number of extensions: 375908
Number of successful extensions: 697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 29
Length of query: 417
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 321
Effective length of database: 4,021,377
Effective search space: 1290862017
Effective search space used: 1290862017
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)