RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2358
         (417 letters)



>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 415

 Score = 26.8 bits (59), Expect = 5.9
 Identities = 9/36 (25%), Positives = 12/36 (33%)

Query: 382 ARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVELLR 417
           A +    MT+D  D          +   SR    LR
Sbjct: 134 ANVSDVVMTNDPFDDNERISWLEGKQPDSRFHAALR 169



 Score = 26.5 bits (58), Expect = 7.7
 Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 8/80 (10%)

Query: 158 ARLRVFCMTDDKEDKTLEHQEHFTEVAKSRDVEVL--------EGKSQFVEFAGNLVPVT 209
           A +    MT+D  D          +   SR    L          +++            
Sbjct: 134 ANVSDVVMTNDPFDDNERISWLEGKQPDSRFHAALRLDPLLNEYEQTKHRLRDWGYKVND 193

Query: 210 KSGDQLRLGFRAFRENRLPF 229
           +  +      + F  + +  
Sbjct: 194 EWNEGSIQEVKRFLTDWIER 213


>d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 201

 Score = 26.2 bits (58), Expect = 6.8
 Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 4/47 (8%)

Query: 301 YLTDSSGTARAQWEDVTGTTPLTFVKDCVSFTTTVSARFWL-MDCRN 346
           YL D      A  ++       + V             FW  MD RN
Sbjct: 61  YLIDHHHLVLALSKEGVEHVLTSEVAKFSHLGK---DEFWSVMDHRN 104


>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal
           domain {Maize (Zea mays) [TaxId: 4577]}
          Length = 380

 Score = 26.5 bits (57), Expect = 7.7
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 18/53 (33%)

Query: 114 RFWLMDCRNVQDSA----KMATELYREAIHVPFMAKFVVFAKRIEQLEARLRV 162
           R W++ CR  + +     K+A ++  E +              +E   A   V
Sbjct: 331 RLWMLQCRTGKRTGKSAVKIAVDMVNEGL--------------VEPRSAIKMV 369



 Score = 26.5 bits (57), Expect = 7.7
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 18/53 (33%)

Query: 338 RFWLMDCRNVQDSA----KMATELYREAIHVPFMAKFVVFAKRIEQLEARLRV 386
           R W++ CR  + +     K+A ++  E +              +E   A   V
Sbjct: 331 RLWMLQCRTGKRTGKSAVKIAVDMVNEGL--------------VEPRSAIKMV 369


>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal
           domain {Trypanosoma brucei [TaxId: 5691]}
          Length = 405

 Score = 26.5 bits (57), Expect = 7.9
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 18/53 (33%)

Query: 114 RFWLMDCRNVQDSA----KMATELYREAIHVPFMAKFVVFAKRIEQLEARLRV 162
           R WL+ CRN + +     ++A ++  E +              I + EA LR+
Sbjct: 357 RLWLLQCRNGKRTIHAAVRIAIDMVNEGL--------------ISREEAVLRI 395



 Score = 26.5 bits (57), Expect = 7.9
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 18/53 (33%)

Query: 338 RFWLMDCRNVQDSA----KMATELYREAIHVPFMAKFVVFAKRIEQLEARLRV 386
           R WL+ CRN + +     ++A ++  E +              I + EA LR+
Sbjct: 357 RLWLLQCRNGKRTIHAAVRIAIDMVNEGL--------------ISREEAVLRI 395


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,517,943
Number of extensions: 69777
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 15
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.9 bits)