BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2359
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VUJ0|RM39_DROME 39S ribosomal protein L39, mitochondrial OS=Drosophila melanogaster
GN=mRpL39 PE=1 SV=2
Length = 333
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 98/132 (74%), Gaps = 1/132 (0%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
MHRPL+ C LQLL+F+ S+P+ N+ FWR+CS MLG+ L+ AFK +QLHSFP PN+
Sbjct: 108 MHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRAFKPEANLQLHSFPGPNI 167
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
KSGSFV+D+ L NW+P E+R LSAEMVKLA + + ERL + QDLA+ +F+ +KY
Sbjct: 168 KSGSFVHDIVLQ-TQNWEPGKEEMRALSAEMVKLAAQDLRIERLDVQQDLAQEMFKDSKY 226
Query: 121 KLEQIPSIVQQS 132
K EQ+PSI QQ+
Sbjct: 227 KSEQLPSISQQT 238
>sp|Q9JKF7|RM39_MOUSE 39S ribosomal protein L39, mitochondrial OS=Mus musculus GN=Mrpl39
PE=2 SV=4
Length = 336
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
M++PL CE++ L F D DP N+ +WRSC++MLG V+ AFKD+ V L P V
Sbjct: 112 MYKPLTKSCEIKFLTFKDPDPKEVNKAYWRSCAMMLGCVIERAFKDDYVVSLVRAPEVPV 171
Query: 61 KSGSFVYDVQLSG-VDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
+G+F YDV L +D W PT LR + + L Y +PFE L + +A +F+HNK
Sbjct: 172 IAGAFCYDVTLDKRLDEWMPTKENLRSFTKDAHALIYRDLPFETLDVDARVALEIFQHNK 231
Query: 120 YKLEQIPSIVQQS 132
YK++ I Q+
Sbjct: 232 YKVDFIEEKASQN 244
>sp|Q9NYK5|RM39_HUMAN 39S ribosomal protein L39, mitochondrial OS=Homo sapiens GN=MRPL39
PE=1 SV=3
Length = 338
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
M++PL CE++ L F D DP N+ +WRSC++M+G V+ AFKD V L P V
Sbjct: 115 MYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPV 174
Query: 61 KSGSFVYDVQL-SGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
SG+F YDV L S +D W PT LR + + L Y+ +PFE L + +A +F+H+K
Sbjct: 175 ISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSK 234
Query: 120 YKLEQIPSIVQQS 132
YK++ I Q+
Sbjct: 235 YKVDFIEEKASQN 247
>sp|Q54J66|SYTC1_DICDI Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium
discoideum GN=thrS1 PE=3 SV=1
Length = 710
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE+DC LQL F D +TFW S + +LG + + + + P
Sbjct: 123 ISRPLEADCNLQLCKF---DSEEGKKTFWHSSAHILGQAMERIYGGQLCI------GPAT 173
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMV-KLAYEAVPFERLSISQDLAEALFEHNK 119
G F YD+ + K SAE L E+ K+ E PFERL++ +D+A +F+ NK
Sbjct: 174 SEG-FYYDMAMGD----KIVSAEDYKLINEVAQKIVQEKQPFERLAVPRDIALTMFKFNK 228
Query: 120 YKLEQIPSIVQQSIVA 135
YK E I I Q+ V+
Sbjct: 229 YKTEIISKIPQEDTVS 244
>sp|A5IJ45|SYT_THEP1 Threonine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=thrS PE=3 SV=1
Length = 640
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSP 58
+ RP+E+DCEL+L+ D + F+R I+ +V+ K+NV++ + P
Sbjct: 45 LKRPIENDCELRLVTLEDPEA----PEFYRHTMAHILAQAVMRIYGKENVKLGI----GP 96
Query: 59 NVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
+++G F YD + N K T +L + EM K+ E +P ER IS++ A LF +
Sbjct: 97 TIENG-FYYDFD---IKNGKLTEEDLPKIEQEMKKIIKENLPIERKEISKEEARKLFNNQ 152
Query: 119 KYKLEQIPSI 128
YKLE I I
Sbjct: 153 PYKLELIEEI 162
>sp|B1L7W6|SYT_THESQ Threonine--tRNA ligase OS=Thermotoga sp. (strain RQ2) GN=thrS PE=3
SV=1
Length = 640
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSP 58
+ RP+E+DCEL+L+ D + F+R I+ +V+ K+NV++ + P
Sbjct: 45 LKRPIENDCELRLVTLEDPEA----PEFYRHTMAHILAQAVMRIYGKENVKLGI----GP 96
Query: 59 NVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
+++G F YD + N + T +L + EM K+ E +P ER IS++ A LF +
Sbjct: 97 TIENG-FYYDFD---IKNGRLTEEDLPKIEQEMKKIIKENLPIERKEISKEEARKLFNNQ 152
Query: 119 KYKLEQIPSI 128
YKLE I I
Sbjct: 153 PYKLELIEEI 162
>sp|Q9WZJ9|SYT_THEMA Threonine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=thrS PE=3 SV=1
Length = 640
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSP 58
+ RP+E+DCEL+L+ D + F+R I+ +V+ K+NV++ + P
Sbjct: 45 LKRPIENDCELRLVTLEDPEA----PEFYRHTMAHILAQAVMRLYGKENVKLGI----GP 96
Query: 59 NVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
+++G F YD + N + T +L + EM K+ E +P ER IS++ A LF
Sbjct: 97 TIENG-FYYDFD---IKNGRLTEEDLPKIEQEMKKIIKENLPIERKEISKEEARELFRDQ 152
Query: 119 KYKLEQIPSI 128
YKLE I I
Sbjct: 153 PYKLELIEEI 162
>sp|B9KAN7|SYT_THENN Threonine--tRNA ligase OS=Thermotoga neapolitana (strain ATCC 49049
/ DSM 4359 / NS-E) GN=thrS PE=3 SV=1
Length = 640
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRS--CSIMLGSVLSNAFKDNVEVQLHSFPSP 58
+ RPLE DC ++ + D + F+R I+ +V+ K+NV++ + P
Sbjct: 45 LKRPLERDCRIRFVTLEDPEA----PEFYRHTMAHILAQAVMRLYGKENVKLGI----GP 96
Query: 59 NVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
+++G F YD + N K T +L + EM K+ E +P ER IS+D A+ +F+
Sbjct: 97 TIENG-FYYDFD---IRNGKLTEEDLPRIEQEMKKIIKENLPIEREEISKDEAKEIFKDQ 152
Query: 119 KYKLEQIPSI 128
YKLE I I
Sbjct: 153 PYKLELIEEI 162
>sp|A6QNM8|SYTC2_BOVIN Probable threonine--tRNA ligase 2, cytoplasmic OS=Bos taurus
GN=TARSL2 PE=2 SV=1
Length = 724
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE D ++LL F D + + +W S + +LG L + L P
Sbjct: 206 LDRPLEGDATVELLTFEDEE---ARAVYWHSSAHVLGEALELHYGG-----LLCCSPPG- 256
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
GSF YDV L ++ +SAEL VL + + E PFERL +S + LF++NK+
Sbjct: 257 -DGSFHYDVYL---EDRAVSSAELPVLESMCQAIIKEQQPFERLEVSTKVLLDLFKYNKF 312
Query: 121 K 121
K
Sbjct: 313 K 313
>sp|Q0V9S0|SYTC2_XENTR Probable threonine--tRNA ligase 2, cytoplasmic OS=Xenopus
tropicalis GN=tarsl2 PE=2 SV=1
Length = 814
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE D ++LL F D + +W S + +LG + N + + P +
Sbjct: 220 LDRPLEQDSNVELLKF---DSEEAQAVYWHSSAHILGETMENFYGGCLCY------GPPI 270
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
++G F YD+ L G +S E L + E PFERL +S+DL +F++NK+
Sbjct: 271 ENG-FYYDMYLDGRG---VSSNEFPSLENMCKAIIKEKQPFERLEVSKDLLLEMFKYNKF 326
Query: 121 K 121
K
Sbjct: 327 K 327
>sp|Q3UQ84|SYTM_MOUSE Threonine--tRNA ligase, mitochondrial OS=Mus musculus GN=Tars2 PE=2
SV=1
Length = 723
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSF--PSP 58
+ RPLE+DC L+ L F D FW S + +LG+ E QL + P
Sbjct: 112 LDRPLETDCHLRFLTF---DSPEGKAVFWHSSAHVLGAA--------AEQQLGAVLCRGP 160
Query: 59 NVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
+ +SG F +D L + SAEL +L +L A PF RL S+D LF+ N
Sbjct: 161 STESG-FYHDFFLGKERTVR--SAELPILERICQELIAAAQPFRRLEASRDQLRQLFKDN 217
Query: 119 KYKLEQI 125
+KL I
Sbjct: 218 HFKLHLI 224
>sp|P26639|SYTC_HUMAN Threonine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=TARS PE=1
SV=3
Length = 723
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE DC L+LL F D + + +W S + ++G + + + P +
Sbjct: 129 LDRPLEEDCTLELLKFEDEE---AQAVYWHSSAHIMGEAMERVYGGCLCY------GPPI 179
Query: 61 KSGSFVYDVQLS--GVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
++G F YD+ L GV +S + L A K+ E FERL + ++ A+F++N
Sbjct: 180 ENG-FYYDMYLEEGGV-----SSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYN 233
Query: 119 KYK 121
K+K
Sbjct: 234 KFK 236
>sp|P87144|SYTC_SCHPO Threonine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ths1 PE=3 SV=1
Length = 703
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE+ C L+L F D + R FW S + +LG +F H P
Sbjct: 95 LTRPLEASCTLKLCDFNDPE---GKRVFWHSSAHILGEATELSF------HCHLCIGPPT 145
Query: 61 KSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
G F Y++ G+DN + T+ + + + + + PFERL IS++ +F +NK
Sbjct: 146 DEG-FFYEM---GIDNGRVITNDDYSSIESYAKQAIKQKQPFERLVISKEGLLEMFRYNK 201
Query: 120 YK 121
YK
Sbjct: 202 YK 203
>sp|O04630|SYTM_ARATH Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana
GN=THRRS PE=2 SV=3
Length = 709
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
M+RPLE DC+L+L F DSD T W S + +LG L + QL P
Sbjct: 121 MNRPLEGDCKLELFKF-DSD--KGRDTLWHSSAHILGQALEQEYG----CQLCIGPCTTR 173
Query: 61 KSGSFVYDV---QLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 117
G F YD +L DN P+ + A K A EA PFER+ +++D A +F
Sbjct: 174 GEG-FYYDGFYGELGLSDNHFPS------IEAGAAKAAKEAQPFERIEVTKDQALEMFSE 226
Query: 118 NKYKLEQI 125
N +K+E I
Sbjct: 227 NNFKVELI 234
>sp|A2RTX5|SYTC2_HUMAN Probable threonine--tRNA ligase 2, cytoplasmic OS=Homo sapiens
GN=TARSL2 PE=1 SV=1
Length = 802
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE D L+LL F D + +W S + +LG + + H P +
Sbjct: 208 LDRPLEGDSSLELLTF---DNEEAQAVYWHSSAHILGEAMELYYGG------HLCYGPPI 258
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
++G F YD+ +++ +S EL L + E PFERL +S+++ +F++NK+
Sbjct: 259 ENG-FYYDM---FIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKF 314
Query: 121 K 121
K
Sbjct: 315 K 315
>sp|Q8BLY2|SYTC2_MOUSE Probable threonine--tRNA ligase 2, cytoplasmic OS=Mus musculus
GN=Tarsl2 PE=2 SV=1
Length = 790
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE D ++LL F D + +W S + +LG + + H P +
Sbjct: 196 LDRPLEGDSTVELLMF---DNEEAQAVYWHSSAHILGEAMELYYGG------HLCYGPPI 246
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
++G F YD+ +++ +S EL L + E PFERL +S+D +F++NK+
Sbjct: 247 ENG-FYYDM---FIEDRVVSSTELSALENICKTIIKEKQPFERLEVSKDTLLEMFKYNKF 302
Query: 121 K 121
K
Sbjct: 303 K 303
>sp|Q5XHY5|SYTC_RAT Threonine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Tars
PE=2 SV=1
Length = 695
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE+DC L+LL F D + + +W S + ++G + + + P +
Sbjct: 101 LDRPLETDCTLELLKFEDEE---AQAVYWHSSAHIMGEAMERVYGGCLCY------GPPI 151
Query: 61 KSGSFVYDVQLS--GVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
++G F YD+ L GV +S + L K+ E FERL + ++ +F++N
Sbjct: 152 ENG-FYYDMYLEEGGV-----SSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYN 205
Query: 119 KYK 121
K+K
Sbjct: 206 KFK 208
>sp|Q9D0R2|SYTC_MOUSE Threonine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Tars PE=1
SV=2
Length = 722
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE+DC L+LL F D + + +W S + ++G + + + P +
Sbjct: 128 LDRPLETDCTLELLKFEDEE---AQAVYWHSSAHIMGEAMERVYGGCLCY------GPPI 178
Query: 61 KSGSFVYDVQLS--GVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
++G F YD+ L GV +S + L K+ E FERL + ++ +F++N
Sbjct: 179 ENG-FYYDMYLEEGGV-----SSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYN 232
Query: 119 KYK 121
K+K
Sbjct: 233 KFK 235
>sp|Q3ZBV8|SYTC_BOVIN Threonine--tRNA ligase, cytoplasmic OS=Bos taurus GN=TARS PE=2 SV=1
Length = 723
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE DC L+LL F D + + +W S + ++G + + + P +
Sbjct: 129 LDRPLEEDCTLELLKFEDEE---AQAVYWHSSAHIMGEAMERVYGGCLCY------GPPI 179
Query: 61 KSGSFVYDVQLS--GVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN 118
++G F YD+ L GV +S + L K+ E FERL + ++ +F++N
Sbjct: 180 ENG-FYYDMYLEEGGV-----SSNDFSSLETLCKKIIKEKQAFERLEVKKETLLEMFKYN 233
Query: 119 KYK 121
K+K
Sbjct: 234 KFK 236
>sp|Q68FW7|SYTM_RAT Threonine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Tars2
PE=2 SV=1
Length = 723
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE+DC L+ L F D FWRS + +LG+ A + ++ L PS
Sbjct: 112 LDRPLETDCHLRFLTF---DSPEGKAVFWRSSAHVLGA----AAEQHLGAVLCRGPS--T 162
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
+SG F D L + S EL L ++ A PF RL S+ LF+ N +
Sbjct: 163 ESG-FYLDFFLGKERTVR--STELPTLERICQEIITAAQPFRRLEASRGQLRQLFKDNHF 219
Query: 121 KLEQI 125
KL I
Sbjct: 220 KLHVI 224
>sp|Q9BW92|SYTM_HUMAN Threonine--tRNA ligase, mitochondrial OS=Homo sapiens GN=TARS2 PE=1
SV=1
Length = 718
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RPLE+D +L+ L F D FW S + +LG+ + F V + P+
Sbjct: 107 LERPLETDSDLRFLTF---DSPEGKAVFWHSSTHVLGAA-AEQFLGAVLCR-----GPST 157
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
+ G F +D L + +EL VL +L A PF RL S+D LF+ N +
Sbjct: 158 EYG-FYHDFFLGKERTIR--GSELPVLERICQELTAAARPFRRLEASRDQLRQLFKDNPF 214
Query: 121 KLEQI 125
KL I
Sbjct: 215 KLHLI 219
>sp|C0QAP1|SYT_DESAH Threonine--tRNA ligase OS=Desulfobacterium autotrophicum (strain
ATCC 43914 / DSM 3382 / HRM2) GN=thrS PE=3 SV=1
Length = 636
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 117
P V+ G F YD+ ++ + + A+ + AEM K+ PF+R I++ A LF+
Sbjct: 96 PVVEDG-FYYDIDMAPI-----SDADFPKIEAEMAKIVKAKKPFQRSEITKQEALELFKD 149
Query: 118 NKYKLEQIPSIVQQSI 133
N YK+E I + Q+I
Sbjct: 150 NPYKVELINGLDDQTI 165
>sp|Q8SRH2|SYTC_ENCCU Probable threonine--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_1570 PE=3 SV=1
Length = 640
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
M + DC+L+L+ F D + FW S + +LG+ L N + D V P +
Sbjct: 49 MSSEILKDCKLELMTFEDDG---ARDIFWHSSAHVLGNALVNLYPDAKLVH-----GPPI 100
Query: 61 KSGSFVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSIS-QDLAEA 113
+ G F YDV ++ P S+E + EMVK+ + FER+ S ++L EA
Sbjct: 101 EEG-FFYDVDVT-----DPISSEDYEKIEEEMVKIMKKNYRFERVIKSKEELLEA 149
>sp|Q9PPV6|SYT_UREPA Threonine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=thrS PE=3 SV=1
Length = 580
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 117
P + G F YD L+ N T +L + EM K+ +A+ F+ ++ + A+ LF+H
Sbjct: 33 PTIDEG-FYYDFNLND-PNTSITPLDLLKIEKEMKKITTQALTFDYEQVTYEKAKELFKH 90
Query: 118 NKYKLEQI 125
NKYKL+ I
Sbjct: 91 NKYKLDII 98
>sp|B1AJH5|SYT_UREP2 Threonine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=thrS PE=3 SV=1
Length = 580
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 117
P + G F YD L+ N T +L + EM K+ +A+ F+ ++ + A+ LF+H
Sbjct: 33 PTIDEG-FYYDFNLND-PNTSITPLDLLKIEKEMKKITTQALTFDYEQVTYEKAKELFKH 90
Query: 118 NKYKLEQI 125
NKYKL+ I
Sbjct: 91 NKYKLDII 98
>sp|Q1MRV8|SYT_LAWIP Threonine--tRNA ligase OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=thrS PE=3 SV=1
Length = 642
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFE 116
P++++G F YD D +P T + + AEM ++ E++PFER+ IS+ A F
Sbjct: 94 PSIENG-FYYDF-----DAERPFTPEDFPAIEAEMQRIINESIPFERIEISKAEALEFFS 147
Query: 117 --HNKYKLEQIPSIVQQSI 133
H YK+E I S+ +I
Sbjct: 148 SLHENYKVEIINSLEDGNI 166
>sp|B6YQ95|SYT_AZOPC Threonine--tRNA ligase OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=thrS PE=3 SV=1
Length = 648
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ RP+ + ++L Y + + RTFW S + +L L + + +H P +
Sbjct: 47 LSRPINENASVKL---YKWEDFEGKRTFWHSSAHLLAESLQELYPN-----IHFGMGPAI 98
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALF--EHN 118
++G F YDV L D +L + +M +LA + + R ++++ A LF +
Sbjct: 99 ENG-FYYDVDLG--DGVVIKDVDLVTIEKKMQELASKKLSISRQNVTKQNALELFGKKGE 155
Query: 119 KYKLEQIPSI 128
YK+E I +
Sbjct: 156 TYKIELISKL 165
>sp|Q8GZ45|SYTC_ARATH Probable threonine--tRNA ligase, cytoplasmic OS=Arabidopsis
thaliana GN=At1g17960 PE=2 SV=2
Length = 458
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 44
M+RPLE DC L++ F DSD TFW S + +LG L +
Sbjct: 90 MNRPLEGDCSLEIFGF-DSD--QGRNTFWHSSAHILGQALEQEY 130
>sp|B5ZC42|SYT_UREU1 Threonine--tRNA ligase OS=Ureaplasma urealyticum serovar 10 (strain
ATCC 33699 / Western) GN=thrS PE=3 SV=1
Length = 580
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 117
P + G F YD L+ N T +L + EM K+A +A+ F+ +S + A+ LF++
Sbjct: 33 PAIDEG-FYYDFNLND-PNTSITPIDLLKIEKEMKKIAAQALTFDYEQVSYEQAKDLFKN 90
Query: 118 NKYKLEQI 125
NKYKL+ I
Sbjct: 91 NKYKLDII 98
>sp|Q189B8|SYT_CLOD6 Threonine--tRNA ligase OS=Clostridium difficile (strain 630)
GN=thrS PE=3 SV=1
Length = 639
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 5 LESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGS 64
+++DC+L L F D + F + + +L + + E +L PS +++G
Sbjct: 51 IDTDCDLNLFKFEDKE---GKEVFRHTSAHILAQAIKRLYP---EAKLAIGPS--IENG- 101
Query: 65 FVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHN--KYKL 122
F YD+ L + + +L + AEM K+A E + ER + ++ A L + YK+
Sbjct: 102 FYYDIDL----DHRLVPEDLEKIEAEMKKIAKEDLKIERFELPRNEALELMKEQGEDYKV 157
Query: 123 EQIPSIVQQSIVA 135
E I + + I++
Sbjct: 158 ELISDLPESEIIS 170
>sp|Q30Y11|SYT_DESDG Threonine--tRNA ligase OS=Desulfovibrio desulfuricans (strain G20)
GN=thrS PE=3 SV=1
Length = 644
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFE 116
P +++G F YD D +P T+ +L + AEM K+ A PFER +S+D A+ +F
Sbjct: 96 PAIENG-FYYDF-----DYERPFTADDLEAIEAEMDKIIKAAHPFERSVMSKDEAKKMFA 149
Query: 117 H--NKYKLEQIPSI 128
YKLE I ++
Sbjct: 150 DMGETYKLELIDAV 163
>sp|B8DPN2|SYT_DESVM Threonine--tRNA ligase OS=Desulfovibrio vulgaris (strain Miyazaki F
/ DSM 19637) GN=thrS PE=3 SV=1
Length = 644
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSISQDLAEALFE 116
P + SG F YD D +P S + L + AEM K+ A PF R +++D A ALFE
Sbjct: 96 PAIDSG-FYYDF-----DYERPFSVDDLEAIEAEMQKIVAAAHPFTRTEMTKDEAVALFE 149
Query: 117 --HNKYKLEQIPSIVQQSI 133
YK+E + I ++
Sbjct: 150 GMGEAYKVEIVRDIPADTV 168
>sp|Q1AWG4|SYT_RUBXD Threonine--tRNA ligase OS=Rubrobacter xylanophilus (strain DSM 9941
/ NBRC 16129) GN=thrS PE=3 SV=1
Length = 639
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 117
P V G F YD++++G + + +L + +M ++A +P R +S++ A L+
Sbjct: 96 PPVDDG-FYYDIEVNG----RISEEDLPRIEEKMREIARRDLPVRREEVSKEEARRLYRD 150
Query: 118 NKYKLEQIPSIVQQSI 133
N YKLE I I + +
Sbjct: 151 NPYKLELIDEIPDERV 166
>sp|Q830D0|SYT_ENTFA Threonine--tRNA ligase OS=Enterococcus faecalis (strain ATCC 700802
/ V583) GN=thrS PE=3 SV=1
Length = 645
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 58 PNVKSG-------SFVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSISQD 109
PN+K G F YD + P +AE L + AEM+K+ E P R IS+
Sbjct: 89 PNIKFGVGPAIDSGFYYDTD----NGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRA 144
Query: 110 LAEALFEHNKYKLEQIPSIVQQSIV 134
A LF + YK+E I + + I+
Sbjct: 145 EALELFADDPYKVELITDLPEDEII 169
>sp|B7XIA1|SYTC_ENTBH Probable threonine--tRNA ligase, cytoplasmic OS=Enterocytozoon
bieneusi (strain H348) GN=EBI_22768 PE=3 SV=1
Length = 634
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 ELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDV 69
E Q + YD D +W S + +LG+ L N + Q P + G F YD+
Sbjct: 53 ENQKIELYDFDSKEGQHVYWHSSAHILGNALVNLY------QCKLVNGPALDEG-FYYDI 105
Query: 70 QLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSI 128
+ +P E + EM ++ + + F + I +D +++ N YK+ I +I
Sbjct: 106 DIE-----RPIREEDFADIEKEMQRIINKNIDFRKKMIKKDDLLKMYKDNDYKVHFINNI 160
>sp|Q3ZXB5|SYT_DEHSC Threonine--tRNA ligase OS=Dehalococcoides sp. (strain CBDB1)
GN=thrS PE=3 SV=1
Length = 582
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 49 EVQLHSFPS------PNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFE 102
E L FP P + +G F YD L T +L + M +L +PF
Sbjct: 27 EAVLSMFPEAKLGIGPAIDTG-FYYDFDLPRT----LTPEDLPEIETRMNQLVKSNLPFR 81
Query: 103 RLSISQDLAEALFEHNKYKLEQIPSIVQQSI 133
R +S+D A LF + YKLE + I +++
Sbjct: 82 REEMSKDEARKLFANQPYKLELLNDITDETV 112
>sp|A5FRB3|SYT_DEHSB Threonine--tRNA ligase OS=Dehalococcoides sp. (strain BAV1) GN=thrS
PE=3 SV=1
Length = 582
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 49 EVQLHSFPS------PNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFE 102
E L FP P + +G F YD L T +L + M +L +PF
Sbjct: 27 EAVLSMFPEAKLGIGPAIDTG-FYYDFDLPRT----LTPEDLPEIETRMNQLVKSNLPFR 81
Query: 103 RLSISQDLAEALFEHNKYKLEQIPSIVQQSI 133
R +S+D A LF + YKLE + I +++
Sbjct: 82 REEMSKDEARKLFANQPYKLELLNDITDETV 112
>sp|A1VBB4|SYT_DESVV Threonine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=thrS PE=3 SV=1
Length = 644
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSISQDLAEALFE 116
P++ +G F YD D +P S E + EM K+ A PFER + +D A ALFE
Sbjct: 96 PSIDNG-FYYDF-----DAERPFSPEDFEAIEREMQKIVDAATPFERSEMPRDEAVALFE 149
Query: 117 --HNKYKLEQIPSIVQQSI 133
YK+E I + ++
Sbjct: 150 GMGETYKVEIIRDLPNDTV 168
>sp|Q728R5|SYT_DESVH Threonine--tRNA ligase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=thrS PE=3
SV=1
Length = 644
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 58 PNVKSGSFVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSISQDLAEALFE 116
P++ +G F YD D +P S E + EM K+ A PFER + +D A ALFE
Sbjct: 96 PSIDNG-FYYDF-----DAERPFSPEDFEAIEREMQKIVDAATPFERSEMPRDEAVALFE 149
Query: 117 --HNKYKLEQIPSIVQQSI 133
YK+E I + ++
Sbjct: 150 GMGETYKVEIIRDLPNDTV 168
>sp|B2RJD6|SYT_PORG3 Threonine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
33277 / DSM 20709 / JCM 12257) GN=thrS PE=3 SV=1
Length = 653
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+HRP+ D E++L + D++ H+ FW S + ++ L + ++ + P +
Sbjct: 47 LHRPINEDAEVKLFKWDDAEGKHA---FWHSSAHLMAEALEELYP-GIKFGI----GPAI 98
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALF--EHN 118
++G F YDV + A+L + M LA R I++ A +F + +
Sbjct: 99 ENG-FYYDVDPG--EGISIKDADLPAIEKRMQDLAARKETIIRRDIAKADALRMFGDKDD 155
Query: 119 KYKLEQIPSIVQQSI 133
+YK+E I + +I
Sbjct: 156 QYKVELISELADGTI 170
>sp|Q67LA3|SYT_SYMTH Threonine--tRNA ligase OS=Symbiobacterium thermophilum (strain T /
IAM 14863) GN=thrS PE=3 SV=1
Length = 651
Score = 35.8 bits (81), Expect = 0.088, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 5 LESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSG- 63
LE DC LQ+L F D + R +R S +++ A K FP + G
Sbjct: 54 LEKDCTLQVLTFKDEE----GREVFRHTST---HIMAQAVK-------RLFPEAKLTVGP 99
Query: 64 ----SFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH- 117
SF YD L +P T +L + AEM K+ P R + ++ A+ F
Sbjct: 100 PLENSFYYDFDLP-----RPLTPEDLEKIEAEMAKIVEADYPIVRQEVDREEAKRFFAER 154
Query: 118 -NKYKLEQIPSIVQQSIVA 135
YK+ + I + +V+
Sbjct: 155 GEDYKVLLVDKIPEDEVVS 173
>sp|B0S169|SYT_FINM2 Threonine--tRNA ligase OS=Finegoldia magna (strain ATCC 29328)
GN=thrS PE=3 SV=1
Length = 634
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 17/133 (12%)
Query: 5 LESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFP-SPNVKSG 63
++SDCE+Q + F D + + FW + S ++ + + F P++ SG
Sbjct: 51 IDSDCEVQFVKFDDDE---GKQVFWHTSSHLMAYAIQRLYPGT------KFAIGPSIDSG 101
Query: 64 SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALF--EHNKYK 121
F YD+ + K +L + AEM K+ E R+ IS+ A F E YK
Sbjct: 102 -FYYDLD----TDHKFVPEDLEKIEAEMKKIVKENPKLVRVEISRKEALERFKNEGQDYK 156
Query: 122 LEQIPSIVQQSIV 134
++ I + + + +
Sbjct: 157 VDLIENFDEDATI 169
>sp|Q3AYC6|SYT_SYNS9 Threonine--tRNA ligase OS=Synechococcus sp. (strain CC9902) GN=thrS
PE=3 SV=1
Length = 611
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 55 FPSPNVKSG-----SFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQ 108
FP+ V G F YD DN +P T +L+ + EM K+ +P ER+ +S+
Sbjct: 53 FPNAQVTIGPWTETGFYYDF-----DNPEPFTEDDLKAIKKEMGKIIGRKLPLERIEVSR 107
Query: 109 DLAEALF--EHNKYKLE 123
D AE ++ YKLE
Sbjct: 108 DEAETRIKAQNEPYKLE 124
>sp|A3DET1|SYT_CLOTH Threonine--tRNA ligase OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=thrS PE=3 SV=1
Length = 635
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 4 PLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSG 63
PLE+DC L LL F D + R + S +L + + D ++ + P +++G
Sbjct: 50 PLENDCTLNLLTFDDEGGRDAYR---HTTSHILAQAVKRLYPD-AKLAI----GPAIENG 101
Query: 64 SFVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEAVPFERLSISQDLAEALFE--HNKY 120
F YD + KP S E L + EM K+ E ER ++ ++ A E + Y
Sbjct: 102 -FYYDFDVE-----KPFSVEDLEKIEEEMKKIIKEDYKLERFTLPREEAIKFMEERNEPY 155
Query: 121 KLEQI 125
K+E I
Sbjct: 156 KVELI 160
>sp|A9NF46|SYT_ACHLI Threonine--tRNA ligase OS=Acholeplasma laidlawii (strain PG-8A)
GN=thrS PE=3 SV=1
Length = 642
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV 60
+ R LE D +LQLL + +H S + ++ + + D + P +
Sbjct: 47 ISRKLEHDGKLQLLTPKEELSFH---VLNHSAAHLMAQAIRKLYPDAL-----FGVGPAI 98
Query: 61 KSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKY 120
+ G + YDV + T A+L + M KL+ E ER+ +S D A +F+++ Y
Sbjct: 99 EEG-YYYDVDFK---DSVFTDADLEEVEKMMKKLSEENHLIERIEVSYDEARDIFKNDPY 154
Query: 121 KLEQI 125
KLE I
Sbjct: 155 KLELI 159
>sp|A5GJT7|SYT_SYNPW Threonine--tRNA ligase OS=Synechococcus sp. (strain WH7803) GN=thrS
PE=3 SV=1
Length = 610
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 55 FPSPNVKSGSFVYDVQLSGVDNWKP-TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEA 113
FP+ V G + DN +P T A+L+ + M+K+ + +P ER+ +S+ AE
Sbjct: 53 FPNARVTIGPWTESGFYYDFDNPEPFTEADLKAIKKGMIKIINKKLPLERVEVSRSEAEE 112
Query: 114 LF--EHNKYKLE 123
++ YKLE
Sbjct: 113 KIKAQNEPYKLE 124
>sp|A8F8Q8|SYT_THELT Threonine--tRNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301
/ DSM 14385 / TMO) GN=thrS PE=3 SV=1
Length = 638
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 5 LESDCELQLLH-FYDSDPYHSNRTFWRSCSIMLGSVLSNAF-KDNVEVQLHSFPSPNVKS 62
++SD E++ + F++ P + + S +L + N + K NV + + P +++
Sbjct: 46 IDSDGEVEFVDLFHELAP----EVYRHTMSHILAQAVMNVYGKKNVRLGI----GPAIEN 97
Query: 63 GSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALF--EHNKY 120
G F YD ++ N K T +L + EM K+ + +P ER+ +S+D A + + Y
Sbjct: 98 G-FYYDFEIL---NGKITEEDLSRIEEEMKKIIEQNIPVERIEMSKDDAISFMTEKDQPY 153
Query: 121 KLEQIPSIVQQSIVASK 137
K+E + I + K
Sbjct: 154 KVELLKEIQDNKVTLFK 170
>sp|P67585|SYT_STAAN Threonine--tRNA ligase OS=Staphylococcus aureus (strain N315)
GN=thrS PE=1 SV=1
Length = 645
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 60 VKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
V G F YD + + +S + + M ++ E + ER +S+D A+ LF +++
Sbjct: 99 VIEGGFYYDFDI----DQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDE 154
Query: 120 YKLEQIPSI 128
YKLE I +I
Sbjct: 155 YKLELIDAI 163
>sp|P67584|SYT_STAAM Threonine--tRNA ligase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=thrS PE=1 SV=1
Length = 645
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 60 VKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
V G F YD + + +S + + M ++ E + ER +S+D A+ LF +++
Sbjct: 99 VIEGGFYYDFDI----DQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDE 154
Query: 120 YKLEQIPSI 128
YKLE I +I
Sbjct: 155 YKLELIDAI 163
>sp|A7X3A6|SYT_STAA1 Threonine--tRNA ligase OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=thrS PE=3 SV=1
Length = 645
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 60 VKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNK 119
V G F YD + + +S + + M ++ E + ER +S+D A+ LF +++
Sbjct: 99 VIEGGFYYDFDI----DQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDE 154
Query: 120 YKLEQIPSI 128
YKLE I +I
Sbjct: 155 YKLELIDAI 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,442,690
Number of Sequences: 539616
Number of extensions: 1600943
Number of successful extensions: 4097
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 4014
Number of HSP's gapped (non-prelim): 110
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)