Query psy2359
Match_columns 137
No_of_seqs 121 out of 1063
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:57:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02908 threonyl-tRNA synthet 99.9 7.7E-27 1.7E-31 201.7 13.1 118 1-130 98-216 (686)
2 PRK12444 threonyl-tRNA synthet 99.9 7.5E-26 1.6E-30 194.2 13.5 117 1-130 51-169 (639)
3 PRK00413 thrS threonyl-tRNA sy 99.9 1.8E-24 3.8E-29 185.4 13.4 118 1-131 47-166 (638)
4 PLN02837 threonine-tRNA ligase 99.8 1E-19 2.2E-24 155.9 13.2 108 8-129 29-138 (614)
5 PRK12305 thrS threonyl-tRNA sy 99.8 9E-20 1.9E-24 155.0 11.4 101 17-130 1-101 (575)
6 COG0441 ThrS Threonyl-tRNA syn 99.7 7.4E-18 1.6E-22 143.1 10.7 99 13-129 18-116 (589)
7 TIGR00418 thrS threonyl-tRNA s 99.7 3.1E-16 6.7E-21 133.1 9.2 90 29-128 1-91 (563)
8 PRK01584 alanyl-tRNA synthetas 99.4 4.4E-12 9.6E-17 108.2 10.5 81 25-114 452-532 (594)
9 KOG1637|consensus 99.3 6.5E-13 1.4E-17 109.2 -0.6 72 1-89 46-117 (560)
10 TIGR00344 alaS alanine--tRNA l 99.2 2.7E-10 5.9E-15 101.1 11.1 83 25-116 555-637 (851)
11 PRK00252 alaS alanyl-tRNA synt 99.1 4.7E-10 1E-14 99.8 10.8 81 25-114 548-628 (865)
12 PLN02900 alanyl-tRNA synthetas 99.1 1E-09 2.2E-14 98.1 11.2 81 25-114 593-673 (936)
13 TIGR03683 A-tRNA_syn_arch alan 99.0 6.5E-09 1.4E-13 92.8 11.3 83 25-116 592-674 (902)
14 PRK13902 alaS alanyl-tRNA synt 99.0 6.5E-09 1.4E-13 92.8 11.3 82 25-115 588-669 (900)
15 COG0013 AlaS Alanyl-tRNA synth 98.7 1.1E-07 2.3E-12 84.3 9.5 80 26-114 563-642 (879)
16 PLN02961 alanine-tRNA ligase 98.6 1.7E-07 3.6E-12 71.6 8.6 78 25-114 81-163 (223)
17 COG2872 Predicted metal-depend 98.5 2.5E-07 5.4E-12 71.5 6.4 80 25-117 94-173 (241)
18 KOG0188|consensus 98.2 4.1E-06 8.8E-11 72.8 7.8 78 27-114 568-645 (895)
19 KOG2105|consensus 96.2 0.019 4.1E-07 45.9 6.5 92 2-109 87-179 (415)
20 PF10752 DUF2533: Protein of u 90.6 0.75 1.6E-05 29.8 4.6 37 77-113 43-79 (84)
21 COG1854 LuxS LuxS protein invo 80.9 14 0.00031 26.9 7.4 61 27-96 51-112 (161)
22 PRK02260 S-ribosylhomocysteina 43.3 1.3E+02 0.0028 22.0 7.2 60 27-95 51-111 (158)
23 PRK11026 ftsX cell division AB 40.6 98 0.0021 24.7 5.9 46 65-117 66-111 (309)
24 COG2315 MmcQ Uncharacterized p 39.2 1.3E+02 0.0028 20.8 6.6 41 55-100 68-108 (118)
25 KOG1637|consensus 38.2 24 0.00052 30.3 2.1 94 25-131 350-451 (560)
26 PF10750 DUF2536: Protein of u 37.6 36 0.00079 21.2 2.3 24 79-102 15-38 (68)
27 TIGR00439 ftsX putative protei 36.4 1.3E+02 0.0027 24.1 5.9 46 65-117 66-111 (309)
28 PRK12399 tagatose 1,6-diphosph 35.7 61 0.0013 26.4 4.0 59 65-127 126-204 (324)
29 PRK04161 tagatose 1,6-diphosph 34.2 61 0.0013 26.5 3.7 59 65-127 128-206 (329)
30 PF09836 DUF2063: Uncharacteri 32.1 64 0.0014 20.7 3.0 27 17-46 28-54 (94)
31 PF02664 LuxS: S-Ribosylhomocy 32.0 2E+02 0.0044 20.9 8.5 65 25-98 48-114 (157)
32 KOG4727|consensus 31.1 34 0.00074 25.4 1.7 13 57-69 68-80 (193)
33 TIGR01213 conserved hypothetic 30.6 1.8E+02 0.0038 24.4 6.0 85 27-117 182-272 (388)
34 PF03416 Peptidase_C54: Peptid 27.3 67 0.0015 25.3 2.9 29 15-46 29-57 (278)
35 TIGR01232 lacD tagatose 1,6-di 26.1 1.1E+02 0.0023 25.0 3.8 59 65-127 127-205 (325)
36 PF09778 Guanylate_cyc_2: Guan 23.9 2.2E+02 0.0048 21.7 5.0 38 80-117 85-122 (212)
37 TIGR02530 flg_new flagellar op 23.3 1.6E+02 0.0035 19.7 3.7 32 77-109 30-61 (96)
38 PRK14799 thrS threonyl-tRNA sy 22.1 47 0.001 28.8 1.2 20 107-126 47-66 (545)
39 PF02686 Glu-tRNAGln: Glu-tRNA 21.1 1.2E+02 0.0027 18.1 2.7 25 79-103 1-25 (72)
40 PF03085 RAP-1: Rhoptry-associ 20.8 1.4E+02 0.0031 23.3 3.6 39 85-125 187-225 (251)
41 KOG1680|consensus 20.5 1.1E+02 0.0023 24.6 2.8 39 6-47 42-80 (290)
No 1
>PLN02908 threonyl-tRNA synthetase
Probab=99.94 E-value=7.7e-27 Score=201.71 Aligned_cols=118 Identities=31% Similarity=0.580 Sum_probs=107.8
Q ss_pred CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCccc-CCcEEEEEecCCCCCCCC
Q psy2359 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVK-SGSFVYDVQLSGVDNWKP 79 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~-~~gfy~d~~~~~~~~~~i 79 (137)
|++|++.||+|+||++++++| +++||||++|||++|++++|+ +++ +++|+++ ++|||||+.+++ .++
T Consensus 98 L~~~l~~d~~le~l~~~~~eg---~~~y~hS~ahlL~~A~~~~~~--~~l----~ig~~i~~~~Gfy~d~~~~~---~~~ 165 (686)
T PLN02908 98 MTRPLEGDCKLKLFKFDDDEG---RDTFWHSSAHILGEALELEYG--CKL----CIGPCTTRGEGFYYDAFYGD---RTL 165 (686)
T ss_pred cCccccCCCeeEEeccccHHH---HHHHHHHHHHHHHHHHHHHhC--CeE----EecCccccCCcEEEEeecCC---CCC
Confidence 689999999999999999999 999999999999999999994 455 6899994 168999998652 479
Q ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhcChhhhhccccccc
Q psy2359 80 TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQ 130 (137)
Q Consensus 80 t~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~~~~k~~ll~~~~~ 130 (137)
|++|+++|+++|++||++++||++..|++++|+++|+.++||++||+.++.
T Consensus 166 t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~ 216 (686)
T PLN02908 166 NEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPE 216 (686)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999999988763
No 2
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=7.5e-26 Score=194.23 Aligned_cols=117 Identities=26% Similarity=0.446 Sum_probs=108.3
Q ss_pred CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT 80 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it 80 (137)
|++|+..||+|+||++++++| .++||||++|||++|++++||+ ..+ .+++++ ++||||||..+ .++|
T Consensus 51 L~~~i~~d~~i~fv~~~~~~g---~~iy~hS~~hlL~~A~~~~~~~-~~~----~i~~~~-~~g~y~d~~~~----~~it 117 (639)
T PRK12444 51 LRRNLEEDAEVEIITIDSNEG---VEIARHSAAHILAQAVKRLYGD-VNL----GVGPVI-ENGFYYDMDLP----SSVN 117 (639)
T ss_pred cCcccCCCCeEEEecCCChHH---HHHHHHHHHHHHHHHHHHHcCC-cEE----EeCCcC-CCeEEEEEeCC----CCCC
Confidence 689999999999999999999 9999999999999999999998 555 578998 56899999876 5799
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhccccccc
Q psy2359 81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPSIVQ 130 (137)
Q Consensus 81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll~~~~~ 130 (137)
++++.+|+++|+++|++|+||++..++++||+++|++ +.+|.+|++..+.
T Consensus 118 ~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~ 169 (639)
T PRK12444 118 VEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPS 169 (639)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCC
Confidence 9999999999999999999999999999999999997 8899999987654
No 3
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=1.8e-24 Score=185.45 Aligned_cols=118 Identities=25% Similarity=0.420 Sum_probs=108.5
Q ss_pred CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT 80 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it 80 (137)
|++++..||+|+|+++++++| +++||||++|||++|++++||+ .++ .+++++ ++||||||..+ .++|
T Consensus 47 L~~~l~~d~~Vefi~~~~~~g---~~~y~hS~~hll~~A~~~~~~~-~~~----~~~~~~-~~g~y~d~~~~----~~lt 113 (638)
T PRK00413 47 LSTPIEEDASLEIITAKDEEG---LEIIRHSAAHLLAQAVKRLYPD-AKL----TIGPVI-ENGFYYDFDRE----RPFT 113 (638)
T ss_pred CCccccCCCceeeeeccchhh---HHHHhhhHHHHHHHHHHHHcCC-ceE----EECCcc-CCeEEEEEeCC----CCCC
Confidence 689999999999999999999 9999999999999999999997 666 578888 46899999876 5799
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhcccccccc
Q psy2359 81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPSIVQQ 131 (137)
Q Consensus 81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll~~~~~~ 131 (137)
++++.+|+++|+++|++|+||++..+++++|.++|++ +.+|++|+++++.+
T Consensus 114 ~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~ 166 (638)
T PRK00413 114 PEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPED 166 (638)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCC
Confidence 9999999999999999999999999999999999998 88999999887543
No 4
>PLN02837 threonine-tRNA ligase
Probab=99.82 E-value=1e-19 Score=155.88 Aligned_cols=108 Identities=21% Similarity=0.340 Sum_probs=97.4
Q ss_pred CceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHH
Q psy2359 8 DCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVL 87 (137)
Q Consensus 8 d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~I 87 (137)
..++++++.++++| +.++|||++|||++|++++||+ .++ .++++++ +||||||..+ ++|++|+.+|
T Consensus 29 ~~~~~~~~~~~~~~---~~~~~HSa~HLL~~Av~~l~~~-~~~----~ig~~~~-~g~y~D~~~~-----~lt~edl~~I 94 (614)
T PLN02837 29 PERVVLPTNESSEK---LLKIRHTCAHVMAMAVQKLFPD-AKV----TIGPWIE-NGFYYDFDME-----PLTDKDLKRI 94 (614)
T ss_pred CceEEEEeccChhh---HHHHHHHHHHHHHHHHHHHcCC-cEE----EECCccC-CCEEEEecCC-----CCCHHHHHHH
Confidence 46899999999999 9999999999999999999998 666 5788884 6799999753 7999999999
Q ss_pred HHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhcccccc
Q psy2359 88 SAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPSIV 129 (137)
Q Consensus 88 e~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll~~~~ 129 (137)
|++|+++|++|+||++..++++||.++|.+ +.||.+|++..+
T Consensus 95 Ek~m~~iI~~n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~ 138 (614)
T PLN02837 95 KKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEILEGIK 138 (614)
T ss_pred HHHHHHHHHcCCCEEEEEecHHHHHHHHHHcCCchhHHHhccCC
Confidence 999999999999999999999999999986 788999887643
No 5
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.82 E-value=9e-20 Score=154.97 Aligned_cols=101 Identities=26% Similarity=0.402 Sum_probs=90.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2359 17 YDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAY 96 (137)
Q Consensus 17 ~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~ 96 (137)
++++| .++||||++|||++|++++||+ .++ .+++++ .+||||||..+ .++|++++.+|+++|+++|+
T Consensus 1 ~~~~g---~~~~~hS~~hlL~~A~~~~~~~-~~~----~~~~~~-~~g~~~d~~~~----~~it~e~l~~Ie~~m~~lI~ 67 (575)
T PRK12305 1 DSPDG---LEVIRHSAAHVLAQAVQELFPD-AKL----GIGPPI-EDGFYYDFDVP----EPFTPEDLKKIEKKMKKIIK 67 (575)
T ss_pred CCHHH---HHHHHHHHHHHHHHHHHHHcCC-ceE----EeCCCc-CCeEEEEeeCC----CCCCHHHHHHHHHHHHHHHh
Confidence 35677 9999999999999999999997 555 578888 46799999876 47999999999999999999
Q ss_pred cCCCeEEEEeCHHHHHHHhhcChhhhhccccccc
Q psy2359 97 EAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQ 130 (137)
Q Consensus 97 ~~~pi~~~~v~~eeA~~~f~~~~~k~~ll~~~~~ 130 (137)
+|+||++..+++++|.++|+.+.||.+|++..+.
T Consensus 68 ~~~pi~~~~v~~eeA~~~f~~~~~k~~l~~~~~~ 101 (575)
T PRK12305 68 RGLPFEREEVSREEAREEFANEPYKLELIDDIPE 101 (575)
T ss_pred cCCCEEEEEecHHHHHHhCCcChhHHHhhhhcCC
Confidence 9999999999999999999999999999987654
No 6
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=7.4e-18 Score=143.07 Aligned_cols=99 Identities=26% Similarity=0.365 Sum_probs=89.0
Q ss_pred EeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q psy2359 13 LLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMV 92 (137)
Q Consensus 13 ~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~ 92 (137)
+++.++ +| ..+.|||++|||+.|++++||+ . .+|+.++ +||||||+.+ .++|++|+.+||++|+
T Consensus 18 ~~~~~~-~~---~~~~rhs~ah~l~~av~~l~p~-~------~~gp~ie-~gfyyd~~~~----~~~~~~dl~~ie~~m~ 81 (589)
T COG0441 18 ITAEDE-EG---LEIIRHSCAHVLAQAVKRLYPD-V------TIGPVIE-EGFYYDFDVK----EPITPEDLLKIEKEMK 81 (589)
T ss_pred cCccCc-cc---hhhhhhHHHHHHHHHHHHhCCC-c------cccCccc-ceeEEeeccC----CCCCHHHHHHHHHHHH
Confidence 344444 78 9999999999999999999998 3 5688885 5799999987 4699999999999999
Q ss_pred HHHHcCCCeEEEEeCHHHHHHHhhcChhhhhcccccc
Q psy2359 93 KLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIV 129 (137)
Q Consensus 93 ~iI~~~~pi~~~~v~~eeA~~~f~~~~~k~~ll~~~~ 129 (137)
+++++++||++..+++++|++.|+ .||+++|+..+
T Consensus 82 ~i~~~~~~~~~~~~~~e~a~~~f~--~yK~~~i~~~~ 116 (589)
T COG0441 82 EIAKENLPIEREVVSREEARAPFG--PYKAELIDCKG 116 (589)
T ss_pred HHHHhcCceEEEEecHHHHHHHhh--hhHHHHHhcCC
Confidence 999999999999999999999999 89999999876
No 7
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.66 E-value=3.1e-16 Score=133.06 Aligned_cols=90 Identities=29% Similarity=0.441 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCH
Q psy2359 29 WRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQ 108 (137)
Q Consensus 29 ~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~ 108 (137)
|||++|||.+|++++||+ ..+ .+++++ ++||||||..+ .++|++++.+|+++|+++|++|+||++..+++
T Consensus 1 ~HS~~hLl~~Al~~~~~~-~~~----~~~~~i-~~g~~~df~~~----~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~ 70 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPD-VKL----AIGPVV-EDGFYYDFELD----RSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSL 70 (563)
T ss_pred CChHHHHHHHHHHHHcCC-cEE----EEcCCc-CCCceecccCC----CCCCHHHHHHHHHHHHHHHhcCCCEEEEEECH
Confidence 799999999999999998 555 578899 45799999865 57999999999999999999999999999999
Q ss_pred HHHHHHhh-cChhhhhccccc
Q psy2359 109 DLAEALFE-HNKYKLEQIPSI 128 (137)
Q Consensus 109 eeA~~~f~-~~~~k~~ll~~~ 128 (137)
++|.++|. .++||.+|++++
T Consensus 71 eeA~~~f~~~~~~k~~Ll~~~ 91 (563)
T TIGR00418 71 EEALEAFKVLEPYKLELLDEI 91 (563)
T ss_pred HHHHHHHhccChhHHHHHhcC
Confidence 99999998 588999999876
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.36 E-value=4.4e-12 Score=108.17 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
.-+.+||++|||.+|++++||. ... ..|..+..++||+||..+ .++|++++++||++|+++|++|+||+..
T Consensus 452 ~~~r~HTAtHLL~~ALr~vlG~-~v~----q~Gs~v~~d~~r~DF~~~----~~it~edL~~IE~~vNeiI~~n~pV~~~ 522 (594)
T PRK01584 452 ETTKLHTATHLLHKALRLVLGD-HVR----QKGSNITAERLRFDFSHP----EKMTDDEIKKVEDIVNLQIKNDLSVKKE 522 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHcCc-cce----eecCCcCCCcEEEEEeCC----CCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 5678999999999999999987 322 245555567899999876 5899999999999999999999999999
Q ss_pred EeCHHHHHHH
Q psy2359 105 SISQDLAEAL 114 (137)
Q Consensus 105 ~v~~eeA~~~ 114 (137)
.+++++|.++
T Consensus 523 ~~s~eEA~~~ 532 (594)
T PRK01584 523 VMSLEEAREK 532 (594)
T ss_pred EcCHHHHHhc
Confidence 9999999984
No 9
>KOG1637|consensus
Probab=99.25 E-value=6.5e-13 Score=109.24 Aligned_cols=72 Identities=33% Similarity=0.711 Sum_probs=65.2
Q ss_pred CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT 80 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it 80 (137)
|++|++.|| +++++|++++| ..+||||++|+|+.|+.+.|++ .+ +.|++++ +|||||+ ++ .++
T Consensus 46 l~rp~e~~~-lell~f~~~~~---k~vfwhssahvlg~a~e~~~g~--~l----c~Gpp~~-~gf~yd~-~~-----~i~ 108 (560)
T KOG1637|consen 46 LDRPLEGDC-LELLKFDDDEG---KDVFWHSSAHVLGEALEQEYGA--HL----CIGPPIE-EGFYYDM-LD-----EIS 108 (560)
T ss_pred cCCcchhhH-HHHccCCCccc---ceeeeehhhhHhhHHHHHhcCe--eE----eeCCCCc-Cceehhh-hc-----ccc
Confidence 689999999 99999999999 8899999999999999999986 33 8999995 5799999 55 499
Q ss_pred HHHHHHHHH
Q psy2359 81 SAELRVLSA 89 (137)
Q Consensus 81 ~edl~~Ie~ 89 (137)
.+|+..||.
T Consensus 109 ~~d~~~~e~ 117 (560)
T KOG1637|consen 109 SNDFPSIEA 117 (560)
T ss_pred ccccccccc
Confidence 999999988
No 10
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.16 E-value=2.7e-10 Score=101.07 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
..+-+||++|||.+|++++|+..+. ..|..+..+++|+||..+ .++|++++++||++||++|++|+||+..
T Consensus 555 ~~m~~HTAtHLL~aAL~~vlg~~v~-----q~Gs~v~~d~~r~Df~~~----~~lt~eel~~IE~~vNelI~~n~pV~~~ 625 (851)
T TIGR00344 555 RIMRNHSATHLLHAALQKVLGNHVW-----QAGSLVSVKKLRFDFSHY----RALTREELEKIEDLVNEQILANIPIKVI 625 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceE-----eccCcccCCcEEEEecCC----CCCCHHHHHHHHHHHHHHHHhCCceEEE
Confidence 4578999999999999999975221 134445456899999865 4899999999999999999999999999
Q ss_pred EeCHHHHHHHhh
Q psy2359 105 SISQDLAEALFE 116 (137)
Q Consensus 105 ~v~~eeA~~~f~ 116 (137)
.+++++|.+++.
T Consensus 626 ~~~~eeA~~~~~ 637 (851)
T TIGR00344 626 FMDLDEAKAKGA 637 (851)
T ss_pred EeCHHHHHhcch
Confidence 999999998764
No 11
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.12 E-value=4.7e-10 Score=99.78 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
..+-+||++|||.+|++++|+..+. ..|..+..+++++||..+ .++|++++.+||++|+++|.+|+||+..
T Consensus 548 ~~m~~HTa~HLL~~al~~~lg~~v~-----q~Gs~~~~~~~r~Df~~~----~~lt~eel~~IE~~vN~lI~~n~pV~~~ 618 (865)
T PRK00252 548 AIARNHSATHLLHAALREVLGEHVT-----QAGSLVAPDRLRFDFSHF----EALTPEELRKIEDLVNEKIRENLPVETE 618 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheE-----eccCcccCCeEEEEeecC----CCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 5688999999999999999985221 134444466899999875 5899999999999999999999999999
Q ss_pred EeCHHHHHHH
Q psy2359 105 SISQDLAEAL 114 (137)
Q Consensus 105 ~v~~eeA~~~ 114 (137)
.+++++|.+.
T Consensus 619 ~~~~~eA~~~ 628 (865)
T PRK00252 619 EMSIEEAKKM 628 (865)
T ss_pred EeCHHHHHhC
Confidence 9999999873
No 12
>PLN02900 alanyl-tRNA synthetase
Probab=99.08 E-value=1e-09 Score=98.14 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
..+-+||++|||.+|++++|+..+. ..|..+..+++++||..+ .++|++++.+||++||++|.+|+||+..
T Consensus 593 ~~m~~HTAtHLL~aALr~vlG~~v~-----q~Gs~v~~d~~r~Df~~~----~~lt~eel~~IE~~vNe~I~~n~pV~~~ 663 (936)
T PLN02900 593 RIAPNHTATHLLNSALKEVLGDHVD-----QKGSLVAFEKLRFDFSHG----KPMTPEELREVESLVNEWIGDALPVEAK 663 (936)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEE-----eccccccCCeEEEEeeCC----CCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 5678999999999999999986221 134445566899999876 5899999999999999999999999999
Q ss_pred EeCHHHHHHH
Q psy2359 105 SISQDLAEAL 114 (137)
Q Consensus 105 ~v~~eeA~~~ 114 (137)
.+++++|.++
T Consensus 664 ~~~~eEA~~~ 673 (936)
T PLN02900 664 EMPLADAKRI 673 (936)
T ss_pred EcCHHHHhhc
Confidence 9999999983
No 13
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=98.96 E-value=6.5e-09 Score=92.80 Aligned_cols=83 Identities=10% Similarity=0.082 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
..+-+||++|||.+|++++++.. ++ ..|..+..+.+++||... ..+|++++.+||+.+|++|.+|+||+..
T Consensus 592 ~~m~~HTAtHLL~~alr~vlG~~--v~---q~Gs~v~~d~~r~Df~~~----~~lt~eel~~IE~~vN~~I~~n~pV~~~ 662 (902)
T TIGR03683 592 RLMRHHTATHVLLAAARRVLGRH--VW---QAGAQKDTDKARLDITHY----KRISEEEIKEIERLANRIVMENRPVSVK 662 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc--ee---ecCccccCCcEEEEEeCC----CCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 56789999999999999999852 21 134445456799999754 4799999999999999999999999999
Q ss_pred EeCHHHHHHHhh
Q psy2359 105 SISQDLAEALFE 116 (137)
Q Consensus 105 ~v~~eeA~~~f~ 116 (137)
.+++++|.+.+.
T Consensus 663 ~~~~~eA~~~~~ 674 (902)
T TIGR03683 663 WMDRNEAEQKYG 674 (902)
T ss_pred EeCHHHHHhcCc
Confidence 999999987643
No 14
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=98.96 E-value=6.5e-09 Score=92.78 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
..+-+||++|||.+|++++|+. . ++ ..|..+..+.+++||... ..+|++++.+||+.+|++|.+|+||+..
T Consensus 588 ~~mr~HTAtHLL~~al~~vlG~-~-v~---q~Gs~v~~d~~r~Df~~~----~~lt~eel~~IE~~vN~~I~~n~pV~~~ 658 (900)
T PRK13902 588 RLMRHHTATHIILAAARKVLGD-H-VW---QAGAQKTVDKARLDITHY----KRITREEVKEIERLANEIVMENRPVKVE 658 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-c-ee---ecCccccCCCEEEEEeCC----CCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4566799999999999999985 2 21 134444456799999764 4899999999999999999999999999
Q ss_pred EeCHHHHHHHh
Q psy2359 105 SISQDLAEALF 115 (137)
Q Consensus 105 ~v~~eeA~~~f 115 (137)
.+++++|.+.+
T Consensus 659 ~~~~~eA~~~~ 669 (900)
T PRK13902 659 WMDRNEAEQKY 669 (900)
T ss_pred ecCHHHHHhcc
Confidence 99999998865
No 15
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.1e-07 Score=84.28 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEE
Q psy2359 26 RTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLS 105 (137)
Q Consensus 26 ~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~ 105 (137)
-+-.||++|||-+|++++.+. . |+ + -|.-+..+..++||.-. ..+|.++|++||..+|++|.+|+|++...
T Consensus 563 ~~~nHTATHLLh~ALr~VLG~-h-V~--Q-aGSlv~~~~lRfDfsH~----~~it~Eel~~IE~~vNe~I~~n~~V~~~~ 633 (879)
T COG0013 563 LMRNHTATHLLHAALRKVLGD-H-VW--Q-AGSLVDPEKLRFDFSHY----KALTAEELKEIERLVNEIIRENLPVKTEE 633 (879)
T ss_pred HHhhChHHHHHHHHHHHHhCc-c-ce--e-cCcccCCCeeEEeecCC----CCCCHHHHHHHHHHHHHHHHcCCceeEEE
Confidence 355799999999999999987 2 21 1 24444456678888654 68999999999999999999999999999
Q ss_pred eCHHHHHHH
Q psy2359 106 ISQDLAEAL 114 (137)
Q Consensus 106 v~~eeA~~~ 114 (137)
+++++|.++
T Consensus 634 m~~~eAk~~ 642 (879)
T COG0013 634 MDLDEAKAK 642 (879)
T ss_pred ccHHHHHHh
Confidence 999998775
No 16
>PLN02961 alanine-tRNA ligase
Probab=98.65 E-value=1.7e-07 Score=71.59 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHH-cCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHH----HHHHHHHHHHHHHcCC
Q psy2359 25 NRTFWRSCSIMLGSVLSNA-FKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAE----LRVLSAEMVKLAYEAV 99 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~-~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~ed----l~~Ie~~m~~iI~~~~ 99 (137)
..+-.||+.|||.+|++++ ++. ... ..+... .++-|+++. ..++.++ +.+||+++|++|++++
T Consensus 81 ~~m~~HTa~HLL~~al~~~~~~~-~~~----~~g~~~-~~~~~v~~~------~~i~~~~~~~~~~~iE~~~N~~I~~~~ 148 (223)
T PLN02961 81 LHSRLHSAGHLLDVCMARVGLGP-LEP----GKGYHF-PDGPFVEYK------GKIPQGELDSKQDELEAEANELIAEGG 148 (223)
T ss_pred hhhccCcHHHHHHHHHHHcCCCc-ccc----cccccc-CCccceeec------ccCCHHHHHhHHHHHHHHHHHHHHcCC
Confidence 5577899999999999997 653 111 123333 345677764 2455444 5799999999999999
Q ss_pred CeEEEEeCHHHHHHH
Q psy2359 100 PFERLSISQDLAEAL 114 (137)
Q Consensus 100 pi~~~~v~~eeA~~~ 114 (137)
||+...+++++|.++
T Consensus 149 ~V~~~~~~~~ea~~~ 163 (223)
T PLN02961 149 KVSAAVLPYDEAAEL 163 (223)
T ss_pred ceeEEEeCHHHHHHh
Confidence 999999999999886
No 17
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=98.52 E-value=2.5e-07 Score=71.46 Aligned_cols=80 Identities=18% Similarity=0.104 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
..+-+||+.|||++++++.|+.. +.|..+....-++||+.+ .+++++..+++..+++|++|+|+...
T Consensus 94 ~~mr~HTa~Hlls~~~~~~~~~~-------~~g~~i~~d~~~iD~~~e------~~~~~~~~v~~~~ne~v~~~~~v~~~ 160 (241)
T COG2872 94 RHMRMHTALHLLSAVLYKVYGAL-------TTGFEIGEDYARIDFDGE------DTEDEIEEVEALANELVKENLPVIIY 160 (241)
T ss_pred HHHhhhHHHHHHHHHhhccccce-------eecceecccccccccccc------cchhhHHHHHHHHHHHHHcCCeeeee
Confidence 45678999999999999999741 345555455566777644 28999999999999999999999999
Q ss_pred EeCHHHHHHHhhc
Q psy2359 105 SISQDLAEALFEH 117 (137)
Q Consensus 105 ~v~~eeA~~~f~~ 117 (137)
.++++||.+++.-
T Consensus 161 ~i~~EE~~~~p~~ 173 (241)
T COG2872 161 FIPREEAEKLPGL 173 (241)
T ss_pred ecCHHHHhhCcCh
Confidence 9999999998765
No 18
>KOG0188|consensus
Probab=98.24 E-value=4.1e-06 Score=72.84 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEe
Q psy2359 27 TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSI 106 (137)
Q Consensus 27 ~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~v 106 (137)
+-.||++|||..|+++++++ ..- .|..+..+.+.+||... ..+|.++++++|..|++.|.++.|++...+
T Consensus 568 m~nHTaTHlLN~aLr~~l~~-t~Q-----kGSlV~pdklRfDf~~k----~~lt~eql~~vE~~~ne~I~~~~~V~~~e~ 637 (895)
T KOG0188|consen 568 MRNHTATHLLNFALRQVLKG-TDQ-----KGSLVAPDKLRFDFSTK----GALTKEQLKKVEDKINEFIQKNAPVYAKEL 637 (895)
T ss_pred hhcchHHHHHHHHHHHhccc-ccc-----cccccChhHeeeecccC----CCCCHHHHHHHHHHHHHHHhcCCceEEEec
Confidence 55799999999999999965 322 35555566788888765 469999999999999999999999999999
Q ss_pred CHHHHHHH
Q psy2359 107 SQDLAEAL 114 (137)
Q Consensus 107 ~~eeA~~~ 114 (137)
+..+|.++
T Consensus 638 ~l~~ak~i 645 (895)
T KOG0188|consen 638 PLAEAKKI 645 (895)
T ss_pred CHHHHhcC
Confidence 99999774
No 19
>KOG2105|consensus
Probab=96.19 E-value=0.019 Score=45.92 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=65.9
Q ss_pred CCccCCCceEEE-eecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359 2 HRPLESDCELQL-LHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT 80 (137)
Q Consensus 2 ~~~l~~d~~ie~-l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it 80 (137)
|.||+....|+. |++.-. --.+-+||..||+.+.+..+|.-. +.+-++ |||.--+.++ ..++|
T Consensus 87 ~~~iePGt~V~V~VD~qkR----~D~MQQHsGQHLitAvad~~fKlk-------TtSWel--G~~~sa~e~~---~~~mT 150 (415)
T KOG2105|consen 87 NDYIEPGTTVEVAVDEQKR----MDYMQQHSGQHLITAVADHLFKLK-------TTSWEL--GRFRSAIELD---TPSMT 150 (415)
T ss_pred CCCCCCCCeEEEEecHHHH----hHHHHHhcchhHHHHHHHhhhccc-------eeeeec--cceeeccccC---CCCcc
Confidence 456766666553 222211 145779999999999999999742 223343 5788777654 24789
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeCHH
Q psy2359 81 SAELRVLSAEMVKLAYEAVPFERLSISQD 109 (137)
Q Consensus 81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~e 109 (137)
.+++..|++..|+.|..-+|+.....+.+
T Consensus 151 aeqvaaieqsvNe~I~d~~~~~v~E~sl~ 179 (415)
T KOG2105|consen 151 AEQVAAIEQSVNEKIRDRLPVNVRELSLD 179 (415)
T ss_pred HHHHHHHHHHHHHHHHhccchheeecccC
Confidence 99999999999999999999887776654
No 20
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=90.62 E-value=0.75 Score=29.80 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHH
Q psy2359 77 WKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEA 113 (137)
Q Consensus 77 ~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~ 113 (137)
.++|-+.+..|.++||++.+.++-=.|..|+.+-..+
T Consensus 43 ~pFs~d~IN~vT~~mN~LAk~givP~Rk~VT~eMV~E 79 (84)
T PF10752_consen 43 EPFSTDKINEVTKEMNELAKQGIVPTRKYVTVEMVKE 79 (84)
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCCCcchhccHHHHHH
Confidence 5899999999999999999999988899999865544
No 21
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=80.91 E-value=14 Score=26.87 Aligned_cols=61 Identities=23% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCH-HHHHHHHHHHHHHHH
Q psy2359 27 TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTS-AELRVLSAEMVKLAY 96 (137)
Q Consensus 27 ~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~-edl~~Ie~~m~~iI~ 96 (137)
.=-||+-||++.-+++-..+..++.=.+.+|= ..|||.-+. + ..++ +-+..++.-|+++..
T Consensus 51 ~~iHTlEHL~A~~iRnh~~g~~~iID~SPMGC---rTGFYm~l~-G-----~~~~~~i~~~~~~~m~dvl~ 112 (161)
T COG1854 51 AGIHTLEHLLAGFIRNHLNGNVEIIDISPMGC---RTGFYMILI-G-----TPTSQDIADVLEATMKDVLK 112 (161)
T ss_pred cchhhHHHHHHHHHHhcccCceeEEEecCccc---ccceEEEEE-C-----CCCHHHHHHHHHHHHHHHHc
Confidence 34699999999999987654222210012222 237998764 3 3455 445667888888887
No 22
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=43.29 E-value=1.3e+02 Score=21.96 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHH-HHHHHHHHH
Q psy2359 27 TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRV-LSAEMVKLA 95 (137)
Q Consensus 27 ~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~-Ie~~m~~iI 95 (137)
.=.||+-||++.-+++-.....++- -+||-==-.|||.-+. + ..+.+++.. +++-++.|.
T Consensus 51 ~alHTlEHL~At~lRn~~~~~~~iI---~~sPMGCrTGFYli~~-g-----~~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 51 AGIHTLEHLLAGFLRNHLDGGVEII---DISPMGCRTGFYLILI-G-----TPDEEDVADALKATLEDVL 111 (158)
T ss_pred cchhHHHHHHHHHHhhCccCCceEE---EECCCccccccEEEEe-C-----CCCHHHHHHHHHHHHHHHH
Confidence 4479999999999998433211221 2233211237997664 3 456655555 455555554
No 23
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=40.62 E-value=98 Score=24.68 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=33.3
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc
Q psy2359 65 FVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 117 (137)
Q Consensus 65 fy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~ 117 (137)
.-+.+.++ ...++++.+.+.+++++ ..+ --+...+|+|||.+.|++
T Consensus 66 ~ei~vyl~----~~~~~~~~~~l~~~L~~--~~~-V~~v~~vskeeal~~l~~ 111 (309)
T PRK11026 66 PQLTVYLD----KTLDDDAANAVVEQLKA--EDG-VEKVNYLSREEALGEFRN 111 (309)
T ss_pred ceEEEEEC----CCCCHHHHHHHHHHHhC--CCC-cceEEEECHHHHHHHHHH
Confidence 33455455 47899999999988875 222 226678899999999976
No 24
>COG2315 MmcQ Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.19 E-value=1.3e+02 Score=20.80 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=34.1
Q ss_pred cCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy2359 55 FPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVP 100 (137)
Q Consensus 55 ~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~p 100 (137)
..++.. +..-++.+.++ .+++.+++..+-+.-.++|..++|
T Consensus 68 ~Payhm-nK~hWisv~l~----~~v~~e~l~~li~~Sy~Lv~~~Lp 108 (118)
T COG2315 68 RPAYHM-NKKHWISVYLD----GSVPDEELYDLIEQSYQLVKAGLP 108 (118)
T ss_pred Cccccc-ccceeEEEecC----CcCCHHHHHHHHHHHHHHHHhhCC
Confidence 355566 45688999887 689999999999999999999887
No 25
>KOG1637|consensus
Probab=38.21 E-value=24 Score=30.34 Aligned_cols=94 Identities=11% Similarity=0.126 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEE----EEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVY----DVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVP 100 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~----d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~p 100 (137)
.---|.-+...|..|+... +..-.+ .. ++|+|| |+.+.+ +--+..+...|....+-.++-+++
T Consensus 350 ~l~~Wd~AE~~L~~al~e~-g~pw~l--------N~-GDGAFYGPKIDi~l~D---al~r~hQcaTIQLDFqLP~rFdL~ 416 (560)
T KOG1637|consen 350 DLETWDEAEFKLEEALNES-GEPWVL--------NP-GDGAFYGPKIDITLDD---ALGRKHQCATIQLDFQLPIRFDLE 416 (560)
T ss_pred CHHHHHHHHHHHHHHHHHh-CCCcee--------cC-CCcccccceeeeEhhh---hcCcccceeeeeecccChhhcCce
Confidence 4456888888899888764 331111 12 344554 444332 334667788888888999999999
Q ss_pred eEE----EEeCHHHHHHHhhcChhhhhcccccccc
Q psy2359 101 FER----LSISQDLAEALFEHNKYKLEQIPSIVQQ 131 (137)
Q Consensus 101 i~~----~~v~~eeA~~~f~~~~~k~~ll~~~~~~ 131 (137)
++. ...+.--++++|++-+++..+|.+...+
T Consensus 417 y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~~g 451 (560)
T KOG1637|consen 417 YETEDGDLERPVMIHRAILGSVERMIAILLESYGG 451 (560)
T ss_pred eecccccccchhhHHHHHhhhHHHHHHHHHHHhCC
Confidence 998 6677778899999977777777654443
No 26
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=37.65 E-value=36 Score=21.23 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCeE
Q psy2359 79 PTSAELRVLSAEMVKLAYEAVPFE 102 (137)
Q Consensus 79 it~edl~~Ie~~m~~iI~~~~pi~ 102 (137)
+-..+++.+|+.+++.|..|.++-
T Consensus 15 FEA~~l~~LEkkIneqIe~Nkail 38 (68)
T PF10750_consen 15 FEANDLQTLEKKINEQIEHNKAIL 38 (68)
T ss_pred EecchHHHHHHHHHHHHhcCceEE
Confidence 345789999999999999998763
No 27
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=36.39 E-value=1.3e+02 Score=24.08 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=32.4
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc
Q psy2359 65 FVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 117 (137)
Q Consensus 65 fy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~ 117 (137)
.-+.+.++ ...++++.+.+.++++. ...--....+|+|||.+.|++
T Consensus 66 ~~i~vyl~----~~~~~~~~~~l~~~l~~---~~~V~~v~~iskeeAl~~l~~ 111 (309)
T TIGR00439 66 PQITVYLE----KALAQSDADTVVSLLTR---DKGVENINYISREDGLAEFQS 111 (309)
T ss_pred ceEEEEeC----CCCCHHHHHHHHHHHhC---CCCccEEEEECHHHHHHHHHH
Confidence 34444445 37899999998888764 222225588899999999976
No 28
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=35.67 E-value=61 Score=26.38 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=43.6
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHH--------------------HHHHHhhcChhhhhc
Q psy2359 65 FVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQD--------------------LAEALFEHNKYKLEQ 124 (137)
Q Consensus 65 fy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~e--------------------eA~~~f~~~~~k~~l 124 (137)
.||+.+-+ ..++.....-|++.-.+-.++++||--..++.+ +|.+.|.+..|.+++
T Consensus 126 lyy~pD~~----~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~d~~~~~yak~kP~~V~~a~kefs~~~~gvDV 201 (324)
T PRK12399 126 LYYDVDEP----DEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFGVDV 201 (324)
T ss_pred EEECCCCC----HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcccccccHHHHhhChHHHHHHHHHhccCCCCCcE
Confidence 56776544 357788888888888889999999988877765 566777766666666
Q ss_pred ccc
Q psy2359 125 IPS 127 (137)
Q Consensus 125 l~~ 127 (137)
++-
T Consensus 202 lKv 204 (324)
T PRK12399 202 LKV 204 (324)
T ss_pred EEE
Confidence 643
No 29
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.17 E-value=61 Score=26.46 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=43.3
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHH--------------------HHHHHhhcChhhhhc
Q psy2359 65 FVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQD--------------------LAEALFEHNKYKLEQ 124 (137)
Q Consensus 65 fy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~e--------------------eA~~~f~~~~~k~~l 124 (137)
.||+.+-+ ..++.....-|++.-.+-.++++||--..++.+ +|.+.|....|.+++
T Consensus 128 lyy~pD~~----~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~d~~~~eyak~kP~~V~~amkefs~~~~gvDV 203 (329)
T PRK04161 128 LYYDVDGD----EEINDQKQAYIERIGSECTAEDIPFFLELLTYDERISDNNSAAYAKLKPHKVNGAMKVFSDKRFGVDV 203 (329)
T ss_pred EEECCCCC----HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcccccccHHHHhhChHHHHHHHHHhccCCCCCcE
Confidence 56776543 467778888888888888999999988877644 566777766676666
Q ss_pred ccc
Q psy2359 125 IPS 127 (137)
Q Consensus 125 l~~ 127 (137)
++-
T Consensus 204 lKv 206 (329)
T PRK04161 204 LKV 206 (329)
T ss_pred EEE
Confidence 654
No 30
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=32.15 E-value=64 Score=20.69 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=19.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHHHcCC
Q psy2359 17 YDSDPYHSNRTFWRSCSIMLGSVLSNAFKD 46 (137)
Q Consensus 17 ~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~ 46 (137)
....+ ..+|++....-|..|+...||.
T Consensus 28 ~~~~r---l~iYr~~~~~~l~~~L~~~fP~ 54 (94)
T PF09836_consen 28 SPARR---LAIYRNNYRARLIEALEATFPV 54 (94)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHH---HHHHHHHHHHHHHHHHHHHhHH
Confidence 44556 9999999999999999999997
No 31
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=32.00 E-value=2e+02 Score=20.93 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHcCC-CceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHH-HHHHHHHHHHHHHcC
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKD-NVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAE-LRVLSAEMVKLAYEA 98 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~-~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~ed-l~~Ie~~m~~iI~~~ 98 (137)
...=.||.-|+++.-+++-..+ ..++- -+||-==..|||.-+. + ..+.++ +..+++-++.|+..+
T Consensus 48 ~~~~lHTlEHL~A~~lRn~~~~~~~~iI---~~gPMGCrTGFYli~~-g-----~~~~~~i~~l~~~~l~~i~~~~ 114 (157)
T PF02664_consen 48 DTAALHTLEHLFATYLRNHLDGDKDKII---DFGPMGCRTGFYLILW-G-----DPSSEDIADLLKETLEFILEFE 114 (157)
T ss_dssp -HHHHHHHHHHHHHHHHHHHSCTTEEEE---EEEE-TTSSEEEEEEE-S-----S--HHHHHHHHHHHHHHHHT-S
T ss_pred CCcchhHHHHHHHHHHhcCccCCCCeEE---EecCcccccccEEEEe-C-----CCCHHHHHHHHHHHHHHHHhcC
Confidence 4566899999999999987653 11221 1222211237998664 3 456555 566677777777644
No 32
>KOG4727|consensus
Probab=31.08 E-value=34 Score=25.41 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=9.3
Q ss_pred CCcccCCcEEEEE
Q psy2359 57 SPNVKSGSFVYDV 69 (137)
Q Consensus 57 ~~~i~~~gfy~d~ 69 (137)
.|.-..||||||+
T Consensus 68 tp~sq~~GyyCdV 80 (193)
T KOG4727|consen 68 TPRSQKGGYYCDV 80 (193)
T ss_pred CcccccCceeeee
Confidence 3444568999997
No 33
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=30.64 E-value=1.8e+02 Score=24.37 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceeeecccCCCcc-----cCC-cEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy2359 27 TFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNV-----KSG-SFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVP 100 (137)
Q Consensus 27 ~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i-----~~~-gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~p 100 (137)
.|..|..-+++..+.+.|++ ....||....-.+ .+| -|-+++..+ . ...-++.++++.+|......+.
T Consensus 182 ~~~~SVeelI~~~v~~~~~~-~~~~Fh~aGREDvDvRMLG~GRPFvlEi~~P----~-rr~~dl~~le~~IN~~~~g~V~ 255 (388)
T TIGR01213 182 NYPESVEELIASPFLKATGG-TDAYFHGAGREDVDVRMLGTGRPFVLEVKEP----R-YRKIDLDPLEEEINTSGKGKVE 255 (388)
T ss_pred CcCchHHHHHHHHHHHHhCC-ceeEEeccCccccceeeccCCCceEEEecCC----c-cCCCCHHHHHHHHhhccCCCEE
Confidence 37779999999999999987 4566666443222 223 477888755 1 2233577888888887777777
Q ss_pred eEEEEeCHHHHHHHhhc
Q psy2359 101 FERLSISQDLAEALFEH 117 (137)
Q Consensus 101 i~~~~v~~eeA~~~f~~ 117 (137)
|.-+.+...+....++.
T Consensus 256 v~~L~~~~~~~v~~ik~ 272 (388)
T TIGR01213 256 VEGLKFATREEVEEVKE 272 (388)
T ss_pred EEEeEEEcHHHHHHHhc
Confidence 77766555555555554
No 34
>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification.; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.
Probab=27.29 E-value=67 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=22.0
Q ss_pred ecCCCCChhhhHHHHHHHHHHHHHHHHHHcCC
Q psy2359 15 HFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD 46 (137)
Q Consensus 15 ~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~ 46 (137)
++.|+-| +-+.-||+.+||+.|+.+.+-+
T Consensus 29 ~~tSD~G---WGCmlRs~QMlLAqaL~~~~lg 57 (278)
T PF03416_consen 29 GLTSDCG---WGCMLRSGQMLLAQALLRHHLG 57 (278)
T ss_dssp S-SB-TT---T-HHHHHHHHHHHHHHHHHHC-
T ss_pred CcccCCC---cccccchhHHHHHHHHHHHhhc
Confidence 3677888 9999999999999999887643
No 35
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.14 E-value=1.1e+02 Score=25.03 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=41.4
Q ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHH--------------------HHHHHhhcChhhhhc
Q psy2359 65 FVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSISQD--------------------LAEALFEHNKYKLEQ 124 (137)
Q Consensus 65 fy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~e--------------------eA~~~f~~~~~k~~l 124 (137)
.||+.+-+ ..++.....-|++.-.+-.++++||--..++.+ +|.+.|.+..|.+++
T Consensus 127 lyy~pD~~----~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~~~~~~~~yak~kP~~V~~a~kefs~~~~gvDV 202 (325)
T TIGR01232 127 LYYDVDDA----EEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFAKVKPRKVNEAMKLFSEPRFNVDV 202 (325)
T ss_pred EEeCCCCC----hHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCCCCcHHHHHhChHHHHHHHHHhccCCCCCcE
Confidence 56666543 367777777888888888899999988877763 456667665666665
Q ss_pred ccc
Q psy2359 125 IPS 127 (137)
Q Consensus 125 l~~ 127 (137)
++-
T Consensus 203 lKv 205 (325)
T TIGR01232 203 LKV 205 (325)
T ss_pred EEE
Confidence 543
No 36
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=23.89 E-value=2.2e+02 Score=21.71 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc
Q psy2359 80 TSAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH 117 (137)
Q Consensus 80 t~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~ 117 (137)
-++|...+.+.-.+.-+.+++|+...++.++..+....
T Consensus 85 ~~~D~~RV~~lF~~A~~~gi~V~~rsvs~~ei~~hl~~ 122 (212)
T PF09778_consen 85 FDEDENRVNRLFQKAKAAGINVEKRSVSIQEIIEHLSS 122 (212)
T ss_pred hhhHHHHHHHHHHHHHHcCCceEEeeccHHHHHHHHhC
Confidence 35667899999999999999999999999998887765
No 37
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=23.29 E-value=1.6e+02 Score=19.67 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeEEEEeCHH
Q psy2359 77 WKPTSAELRVLSAEMVKLAYEAVPFERLSISQD 109 (137)
Q Consensus 77 ~~it~edl~~Ie~~m~~iI~~~~pi~~~~v~~e 109 (137)
..++++++.+|++.+.+.-.++.. +.+.+-.+
T Consensus 30 I~l~~~~~~~i~~av~~A~~KG~k-esLvl~~d 61 (96)
T TIGR02530 30 ISINPDDWKKLLEAVEEAESKGVK-DSLILMND 61 (96)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCC-ceEEEeCC
Confidence 578999999999999999999876 55555433
No 38
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=22.08 E-value=47 Score=28.85 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=13.7
Q ss_pred CHHHHHHHhhcChhhhhccc
Q psy2359 107 SQDLAEALFEHNKYKLEQIP 126 (137)
Q Consensus 107 ~~eeA~~~f~~~~~k~~ll~ 126 (137)
+++||+++|+.+.||..+|+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~ 66 (545)
T PRK14799 47 TLDEVKKAINENVLANVSIE 66 (545)
T ss_pred cHHHHHHHHhcCcceeeEee
Confidence 55667777777777766665
No 39
>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation. The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....
Probab=21.05 E-value=1.2e+02 Score=18.13 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCeEE
Q psy2359 79 PTSAELRVLSAEMVKLAYEAVPFER 103 (137)
Q Consensus 79 it~edl~~Ie~~m~~iI~~~~pi~~ 103 (137)
++++++..+.+.|+.|+..=-.+..
T Consensus 1 l~eeE~~~~~~~l~~il~~~~~l~~ 25 (72)
T PF02686_consen 1 LTEEELEKLTKQLNDILDYVEKLQE 25 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4788888898888888775444433
No 40
>PF03085 RAP-1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR004318 Members of this family are found in the parasite Babesia bigemina. Other rhoptry-associated proteins are found in Plasmodium falciparum but these do not belong to this family. Animal infection with B. bigemina may produce a pattern similar to human malaria []. Rhoptry organelles form part of the apical complex in apicomplexan parasites. Rhoptry-associated proteins are antigenic, and generate partially protective immune responses in infected mammals. Thus RAPs are among the targeted vaccine antigens for babesial (and malarial) parasites. However, RAP-1 proteins are encoded by by a multigene family; thus RAP-1 proteins are polymorphic, with B and T cell epitopes that are conserved among strains, but not across species [, , ]. Antibodies to B. bigemina RAP-1 may also be helpful in the serological detection of B. bigemina infections [].
Probab=20.79 E-value=1.4e+02 Score=23.32 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhcChhhhhcc
Q psy2359 85 RVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQI 125 (137)
Q Consensus 85 ~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~~~~k~~ll 125 (137)
..|++.++++|+.+.|-....++.++...++.. |+..|.
T Consensus 187 ~~i~~~L~~~ir~~~~~~~~~~~~~~L~~v~~~--Y~~Yl~ 225 (251)
T PF03085_consen 187 KKIKRALKRIIRSNVPEDFIKYSISDLSHVFDS--YKDYLM 225 (251)
T ss_pred hhHHHHHHHHHHHhCccccccCCHHHHHHHHHH--HHHHHh
Confidence 478999999999999999999999998888875 554444
No 41
>KOG1680|consensus
Probab=20.47 E-value=1.1e+02 Score=24.57 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCC
Q psy2359 6 ESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDN 47 (137)
Q Consensus 6 ~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~ 47 (137)
.+|..|-+|+++-+.. ++++.+-.+.=|..|+.++..++
T Consensus 42 ~~d~~I~lItlNRP~~---~Nal~~~~m~eL~~A~~~~e~D~ 80 (290)
T KOG1680|consen 42 GEDNGIALITLNRPKA---LNALCRATMLELAEAFKDFESDD 80 (290)
T ss_pred ecCCCeEEEEeCChHH---hccccHHHHHHHHHHHHHhhccC
Confidence 4788999999999988 88999999999999999987653
Done!