Query psy2359
Match_columns 137
No_of_seqs 121 out of 1063
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:57:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tke_A Threonyl-tRNA synthetas 100.0 2.6E-29 9E-34 190.1 12.3 117 1-130 47-166 (224)
2 1qf6_A THRRS, threonyl-tRNA sy 99.9 4.5E-26 1.5E-30 194.5 11.6 118 1-131 47-167 (642)
3 1nyr_A Threonyl-tRNA synthetas 99.9 3.1E-26 1E-30 195.5 9.9 118 1-131 49-166 (645)
4 1v4p_A Alanyl-tRNA synthetase; 99.8 1.9E-20 6.5E-25 134.2 9.9 89 25-121 4-92 (157)
5 3kew_A DHHA1 domain protein; s 99.5 2.8E-14 9.7E-19 108.9 6.1 78 25-115 93-170 (241)
6 2ztg_A Alanyl-tRNA synthetase; 99.4 5E-13 1.7E-17 115.2 10.8 83 25-116 595-677 (739)
7 2zze_A Alanyl-tRNA synthetase; 99.4 1.4E-12 4.6E-17 112.7 10.5 83 25-116 608-690 (752)
8 2e1b_A PH0108, 216AA long hypo 99.3 3.7E-12 1.3E-16 95.6 7.6 75 24-108 93-168 (216)
9 1wwt_A Threonyl-tRNA synthetas 97.9 4.4E-07 1.5E-11 58.4 -2.4 30 1-33 58-87 (88)
10 2kmm_A Guanosine-3',5'-BIS(dip 83.9 0.83 2.8E-05 27.1 2.8 20 1-20 48-67 (73)
11 1vje_A Autoinducer-2 productio 61.3 40 0.0014 23.8 8.4 70 16-97 43-113 (166)
12 1j6x_A Autoinducer-2 productio 53.3 55 0.0019 22.9 7.8 68 16-95 41-109 (160)
13 1j6w_A Autoinducer-2 productio 50.0 66 0.0023 22.8 8.0 72 16-96 40-113 (175)
14 3hvz_A Uncharacterized protein 49.1 12 0.00039 23.0 2.4 20 1-20 53-72 (78)
15 1xg8_A Hypothetical protein SA 34.7 61 0.0021 21.2 4.2 13 34-46 33-45 (111)
16 2fki_A Protein YJBR; NESG, GFT 34.5 95 0.0033 20.2 6.4 52 37-100 57-108 (126)
17 1j98_A Autoinducer-2 productio 30.0 1.4E+02 0.0048 20.7 8.1 72 16-96 40-114 (157)
18 2ki0_A DS119; beta-alpha-beta, 23.4 72 0.0025 16.1 2.4 14 80-93 13-26 (36)
19 1ctf_A Ribosomal protein L7/L1 22.9 1.3E+02 0.0043 18.3 3.9 27 89-115 35-61 (74)
20 2a1v_A Conserved hypothetical 20.2 2E+02 0.0069 19.1 5.4 54 36-100 67-121 (144)
No 1
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.96 E-value=2.6e-29 Score=190.06 Aligned_cols=117 Identities=21% Similarity=0.362 Sum_probs=107.8
Q ss_pred CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT 80 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it 80 (137)
|++|+..||.|+||++++++| +++||||++|||++|++++||+ .++ .+|+++ ++||||||..+ .++|
T Consensus 47 L~~~l~~~~~ve~it~~~~~g---~~~~~HS~~HlL~~A~~~~~~~-~~~----~~g~~~-~~g~y~d~~~~----~~~t 113 (224)
T 1tke_A 47 ACDLIENDAQLSIITAKDEEG---LEIIRHSCAHLLGHAIKQLWPH-TKM----AIGPVI-DNGFYYDVDLD----RTLT 113 (224)
T ss_dssp TTCCBCSCEEEEEECTTSHHH---HHHHHHHHHHHHHHHHHHHSTT-CEE----CCCCEE-TTEEEEEEECS----SCCC
T ss_pred cceEcCCCCeEEEEecCchhH---HHHHHHHHHHHHHHHHHHHCCC-cEE----EECCcc-CCeEEEEEeCC----CCCC
Confidence 678999999999999999999 9999999999999999999997 666 678888 56899999876 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhcccc-ccc
Q psy2359 81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQIPS-IVQ 130 (137)
Q Consensus 81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll~~-~~~ 130 (137)
++|+++||++|+++|++|+||++..++++||.++|+. ++||++|++. +|.
T Consensus 114 ~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~ 166 (224)
T 1tke_A 114 QEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAH 166 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCC
Confidence 9999999999999999999999999999999999987 8999999986 643
No 2
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.93 E-value=4.5e-26 Score=194.53 Aligned_cols=118 Identities=21% Similarity=0.364 Sum_probs=108.9
Q ss_pred CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT 80 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it 80 (137)
|++|++.||+|+|||+++++| ++++|||++|||++|++++||+ +++ .+|++++ +||||||..+ .++|
T Consensus 47 l~~~l~~d~~~~~~~~~~~~~---~~~~~HSa~HlL~~Al~~~~~~-~~~----~~G~~i~-~gfy~Df~~~----~~~t 113 (642)
T 1qf6_A 47 ACDLIENDAQLSIITAKDEEG---LEIIRHSCAHLLGHAIKQLWPH-TKM----AIGPVID-NGFYYDVDLD----RTLT 113 (642)
T ss_dssp TTSCBCSCEECCEECTTSHHH---HHHHHHHHHHHHHHHHHHHCTT-CEE----CCCCEET-TEEEEEEECS----SCCC
T ss_pred cccccCCCceEEEeecCcHHH---HHHHHHHHHHHHHHHHHHhCCC-cEE----EECCccC-CeeEEEEeCC----CCCC
Confidence 689999999999999999999 9999999999999999999998 666 6899995 6799999876 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhc--Chhhhhcc-cccccc
Q psy2359 81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEH--NKYKLEQI-PSIVQQ 131 (137)
Q Consensus 81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~--~~~k~~ll-~~~~~~ 131 (137)
++|+++||++|+++|++|+||++..+++++|.++|+. ++||++|+ +.++.+
T Consensus 114 ~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~ 167 (642)
T 1qf6_A 114 QEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHD 167 (642)
T ss_dssp HHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCC
Confidence 9999999999999999999999999999999999988 89999999 766543
No 3
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.93 E-value=3.1e-26 Score=195.45 Aligned_cols=118 Identities=23% Similarity=0.438 Sum_probs=109.7
Q ss_pred CCCccCCCceEEEeecCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCC
Q psy2359 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPT 80 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it 80 (137)
|++|+..||+|+||++++++| +++||||++|||++|++++||+ .++ .+|+++ .+||||||..+ .++|
T Consensus 49 l~~~l~~d~~v~~~~~~~~~g---~~~~~HSa~HlL~~A~~~~~~~-~~~----~~g~~~-~~g~~~Df~~~----~~~t 115 (645)
T 1nyr_A 49 LTKPLETDGSIEIVTPGSEEA---LEVLRHSTAHLMAHAIKRLYGN-VKF----GVGPVI-EGGFYYDFDID----QNIS 115 (645)
T ss_dssp TTSCCCSCBCCCEECTTSHHH---HHHHHHHHHHHHHHHHHHHSSS-CEE----CCCCEE-TTEEEEEEECS----SCCC
T ss_pred CCcccCCCCeEEEeeccchhH---HHHHHHHHHHHHHHHHHHHcCC-cEE----EECCcc-CCceEEEecCC----CCCC
Confidence 689999999999999999999 9999999999999999999998 666 578999 56899999876 5899
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeCHHHHHHHhhcChhhhhcccccccc
Q psy2359 81 SAELRVLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLEQIPSIVQQ 131 (137)
Q Consensus 81 ~edl~~Ie~~m~~iI~~~~pi~~~~v~~eeA~~~f~~~~~k~~ll~~~~~~ 131 (137)
++|+++||++|+++|++|+||++..++++||.++|++++||.+||+.++.+
T Consensus 116 ~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~ 166 (645)
T 1nyr_A 116 SDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPED 166 (645)
T ss_dssp STTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSS
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCC
Confidence 999999999999999999999999999999999999899999999987654
No 4
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.83 E-value=1.9e-20 Score=134.18 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
+++||||++|||++|++++||..+++ .+++++.++|+||+|+.+ ..+|++++++||++|+++|++|+||++.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~----~~~~~i~~~~~~~~~d~~----~~~t~e~l~~IE~~~n~~I~~~~pi~~~ 75 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKW----TYSTYVKGNKGVLIVKFD----RKPSDEEIREIERLANEKVKENAPIKIY 75 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCC----EEEEEEETTEEEEEEECS----SCCCHHHHHHHHHHHHHHHHHTCBCEEE
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEE----ecCceecCCCcEEEEEeC----CCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 89999999999999999999832433 456778655899999876 5899999999999999999999999999
Q ss_pred EeCHHHHHHHhhcChhh
Q psy2359 105 SISQDLAEALFEHNKYK 121 (137)
Q Consensus 105 ~v~~eeA~~~f~~~~~k 121 (137)
.+++++|.++|+.+.++
T Consensus 76 ~~~~~eA~~~f~~~~~~ 92 (157)
T 1v4p_A 76 ELPREEAEKMFGEDMYD 92 (157)
T ss_dssp EEEHHHHHHHHGGGGSC
T ss_pred EeCHHHHHHhhCccccc
Confidence 99999999999875444
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.49 E-value=2.8e-14 Score=108.91 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
..+.+||++|||++|++++||. .. .|+.+..++||+||. . ++|++++++||++||++|++|+||++.
T Consensus 93 ~~~~~HTa~HLL~~al~~~~g~-~~------~G~~v~~~~~r~Df~-~-----~lt~e~l~~IE~~vn~~I~~~~pV~~~ 159 (241)
T 3kew_A 93 DGMQQHLGQHLLSGCFYDLFGA-NT------CGFHLGKEISTVDIV-G-----FLDEKTIREAEKEANRLIFENLEVKSY 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-CE------EEEEECSSCEEEEEE-S-----CCCHHHHHHHHHHHHHHHHHTCBEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHCCC-Ce------EeccccCCeEEEEEC-C-----CCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5688999999999999999997 32 466665568999998 5 799999999999999999999999999
Q ss_pred EeCHHHHHHHh
Q psy2359 105 SISQDLAEALF 115 (137)
Q Consensus 105 ~v~~eeA~~~f 115 (137)
+++++||.+++
T Consensus 160 ~~~~~eA~~~~ 170 (241)
T 3kew_A 160 APSKKELKKVK 170 (241)
T ss_dssp CCCTTTTTTCC
T ss_pred EcCHHHHHhcC
Confidence 99999998875
No 6
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.44 E-value=5e-13 Score=115.25 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
..+++||++|||++|++++||.. +. ..+..+..+|+||||..+ ..+|++++++||++|+++|++|+||++.
T Consensus 595 ~~m~~HTAtHLL~~ALr~vlG~~--v~---q~GS~v~~d~~r~DF~~~----~~lT~edL~~IE~~vNeiI~~nlpV~~~ 665 (739)
T 2ztg_A 595 RHMRHHSATHVLLYSLQKVLGNH--VW---QAGARKEFSKARLDVTHF----RRPSEEEIKEIEMLANREILANKPIKWE 665 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT--CC---EEECCSCCSSCEEEEECS----SCCCHHHHHHHHHHHHHHHHTTCBEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc--EE---ecCcEEcCCcEEEEEeCC----CCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56999999999999999999862 21 123333456899999865 5899999999999999999999999999
Q ss_pred EeCHHHHHHHhh
Q psy2359 105 SISQDLAEALFE 116 (137)
Q Consensus 105 ~v~~eeA~~~f~ 116 (137)
.+++++|.++|+
T Consensus 666 ~~s~eEA~~~~~ 677 (739)
T 2ztg_A 666 WMDRIEAERKFG 677 (739)
T ss_dssp EEEHHHHHHHHC
T ss_pred EeCHHHHHHhCC
Confidence 999999999873
No 7
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.39 E-value=1.4e-12 Score=112.66 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q psy2359 25 NRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERL 104 (137)
Q Consensus 25 ~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~~~ 104 (137)
..+.+||++|||++|++++||. ... ..|+.+..++||+||... ..+|++++++||++||++|++|+||++.
T Consensus 608 ~~mr~HTAtHLL~~ALr~vlG~-~v~----q~Gs~v~~d~~rfDFs~~----~~lt~edL~~IE~~vNeiI~~nlpV~~~ 678 (752)
T 2zze_A 608 QHMRHHTGTHVLMGALVRVLGR-HVW----QAGSQLTTDWARLDISHY----XRISEEELXEIEMLANRIVMEDRXVTWE 678 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TCE----EEEEEECSSCEEEEEECS----SCCCHHHHHHHHHHHHHHHHHTCBEEEE
T ss_pred HHHHHhHHHHHHHHHHHHHcCC-cee----eecCcccCCceEEEEeCC----CCCCHHHHHHHHHHHHHHHHhCCcccee
Confidence 5688999999999999999986 322 246666567899999875 5899999999999999999999999999
Q ss_pred EeCHHHHHHHhh
Q psy2359 105 SISQDLAEALFE 116 (137)
Q Consensus 105 ~v~~eeA~~~f~ 116 (137)
.+++++|.+++.
T Consensus 679 ~~s~eEA~~~~~ 690 (752)
T 2zze_A 679 WLPRTTAEQXYG 690 (752)
T ss_dssp EEEHHHHHHHHC
T ss_pred ecCHHHHhhcch
Confidence 999999999875
No 8
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.31 E-value=3.7e-12 Score=95.64 Aligned_cols=75 Identities=9% Similarity=-0.009 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCC-ceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeE
Q psy2359 24 SNRTFWRSCSIMLGSVLSNAFKDN-VEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFE 102 (137)
Q Consensus 24 ~~~~y~~S~~~lL~~A~~~~~~~~-~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~pi~ 102 (137)
...+.+||++|||++|++++||.. +.+ .|+.+..++||+||..+ .+++++ +++||++||++|++|+||+
T Consensus 93 ~~~~~~HTA~HlL~~Al~~~~g~~~~~~-----~g~~v~~~~~r~Df~~~----~~lt~e-l~~IE~~vn~~I~~~~pv~ 162 (216)
T 2e1b_A 93 YKLMRIHTGLHLLEHVLNEVLGEGNWQL-----VGSGMSVEKGRYDIAYP----ENLNKY-KEQIISLFNKYVDEGGEVK 162 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCEE-----EECCBCSSEEEEEEECS----SCGGGG-HHHHHHHHHHHHHHCCBEE
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCcccee-----eeeeEcCCcEEEEEeCC----CCCCHH-HHHHHHHHHHHHhcCCCEE
Confidence 366889999999999999999861 133 35556567899999876 468886 9999999999999999999
Q ss_pred EEEeCH
Q psy2359 103 RLSISQ 108 (137)
Q Consensus 103 ~~~v~~ 108 (137)
+..+++
T Consensus 163 ~~~~~~ 168 (216)
T 2e1b_A 163 IWWEGD 168 (216)
T ss_dssp EEESSS
T ss_pred EEEcCC
Confidence 998885
No 9
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=97.91 E-value=4.4e-07 Score=58.41 Aligned_cols=30 Identities=40% Similarity=0.772 Sum_probs=27.7
Q ss_pred CCCccCCCceEEEeecCCCCChhhhHHHHHHHH
Q psy2359 1 MHRPLESDCELQLLHFYDSDPYHSNRTFWRSCS 33 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~g~~~~~~y~~S~~ 33 (137)
|++||+.||.|+||++++++| +++||||++
T Consensus 58 L~~~l~~d~~ve~vt~~~~eg---~~i~rHS~~ 87 (88)
T 1wwt_A 58 LDRPLEEDCTLELLKFEDEEA---QAVYSGPSS 87 (88)
T ss_dssp SSSCCCSSEEEEECSSCCSCC---SCSCCCCSC
T ss_pred CCcCcCCCCEEEEEeCCCHHH---hhheeccCC
Confidence 678999999999999999999 899999974
No 10
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=83.91 E-value=0.83 Score=27.09 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=17.2
Q ss_pred CCCccCCCceEEEeecCCCC
Q psy2359 1 MHRPLESDCELQLLHFYDSD 20 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~ 20 (137)
|+++|..+|.|+|+++.+..
T Consensus 48 l~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 48 LSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp TTCBCCSSSBEEEEECCCCC
T ss_pred CCcCcCCCCEEEEEECCCCc
Confidence 56899999999999998764
No 11
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=61.33 E-value=40 Score=23.76 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=42.0
Q ss_pred cCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHH-HHHHHHHH
Q psy2359 16 FYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRV-LSAEMVKL 94 (137)
Q Consensus 16 ~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~-Ie~~m~~i 94 (137)
|..|+-......=-||+-||++.-+++-.++-+.+ +.+|=. .|||.-+. + ..+.+++.. +++-|+.+
T Consensus 43 ~~qPN~e~m~~~~iHTlEHL~A~~lRnh~~~iId~---sPMGCr---TGFYlil~-G-----~~~~~~v~~~~~~~l~~I 110 (166)
T 1vje_A 43 FLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDV---SPMGAR---TGMYMAVI-G-----EPDEQGVMKAFEAALKDT 110 (166)
T ss_dssp CSCTTSCCCCHHHHHHHHHHHHHHHHHHCTTEEEE---EECTTS---SEEEEEEE-S-----SCCHHHHHHHHHHHHHHH
T ss_pred ecCCChhhCCCcchhHHHHHHHHHHhcCCCCeEEE---CCcccc---cccEEEEe-C-----CCCHHHHHHHHHHHHHHH
Confidence 44443323355668999999999999866541222 122322 37997664 3 466665554 66667777
Q ss_pred HHc
Q psy2359 95 AYE 97 (137)
Q Consensus 95 I~~ 97 (137)
..+
T Consensus 111 l~~ 113 (166)
T 1vje_A 111 AGH 113 (166)
T ss_dssp HTC
T ss_pred Hhc
Confidence 753
No 12
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=53.33 E-value=55 Score=22.90 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=40.5
Q ss_pred cCCCCChhhhHHHHHHHHHHHHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHH-HHHHHHHH
Q psy2359 16 FYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRV-LSAEMVKL 94 (137)
Q Consensus 16 ~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~-Ie~~m~~i 94 (137)
|..|+-......=-||+-||++.-+++-.++-+.+ +.+|=. .|||.-+. + ..+.+++.. +++-|+.+
T Consensus 41 ~~qPN~e~m~~~~iHTlEHL~A~~lRnh~~~iId~---sPMGCr---TGFYlil~-G-----~~~~~~v~~~~~~~l~~I 108 (160)
T 1j6x_A 41 FKQPNRDHMDMPSLHSLEHLVAEIIRNHANYVVDW---SPMGCQ---TGFYLTVL-N-----HDNYTEILEVLEKTMQDV 108 (160)
T ss_dssp CSCTTTCCCCHHHHHHHHHHHHHHHHHHCSCEEEE---EECTTS---SEEEEEEE-S-----CCCHHHHHHHHHHHHHHH
T ss_pred ecCCChhhCCCcchhHHHHHHHHHHhhCCCCeEEE---CCcCcc---hhcEEEEe-C-----CCCHHHHHHHHHHHHHHH
Confidence 44443323355668999999999999866541222 122322 37998664 3 466666555 55556666
Q ss_pred H
Q psy2359 95 A 95 (137)
Q Consensus 95 I 95 (137)
.
T Consensus 109 l 109 (160)
T 1j6x_A 109 L 109 (160)
T ss_dssp T
T ss_pred H
Confidence 5
No 13
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=50.00 E-value=66 Score=22.83 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=41.2
Q ss_pred cCCCCChhhhHHHHHHHHHHHHHHHHHHcCC-CceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHH-HHHHHHH
Q psy2359 16 FYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD-NVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRV-LSAEMVK 93 (137)
Q Consensus 16 ~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~-~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~-Ie~~m~~ 93 (137)
|..|+-......=-||+-||++.-+++-... ..++- -+||-==-.|||.-+. + ..+.+++.. +++-|+.
T Consensus 40 ~~qPN~e~m~~~~iHTlEHL~A~~lRnh~~~~~~~iI---d~sPMGCrTGFYlil~-G-----~~~~~~v~~~~~~~l~~ 110 (175)
T 1j6w_A 40 FCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEII---DISPMGCRTGFYMSLI-G-----TPNEQKVSEAWLASMQD 110 (175)
T ss_dssp CSCTTTCCCCHHHHHHHHHHHHHHHHHHHCBTTBEEE---EEEECTTSSEEEEEEE-S-----CCCHHHHHHHHHHHHHH
T ss_pred ecCCChhhCCCccchHHHHHHHHHHhhCccCCCCeEE---EeCCcCcccccEEEEe-C-----CCCHHHHHHHHHHHHHH
Confidence 4444332335566899999999999986542 12221 1222211237997664 3 466666555 6666777
Q ss_pred HHH
Q psy2359 94 LAY 96 (137)
Q Consensus 94 iI~ 96 (137)
+..
T Consensus 111 Il~ 113 (175)
T 1j6w_A 111 VLG 113 (175)
T ss_dssp HHT
T ss_pred HHh
Confidence 763
No 14
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=49.13 E-value=12 Score=22.96 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=15.4
Q ss_pred CCCccCCCceEEEeecCCCC
Q psy2359 1 MHRPLESDCELQLLHFYDSD 20 (137)
Q Consensus 1 L~~~l~~d~~ie~l~~~~~~ 20 (137)
|++||+.++.|++++.+.-+
T Consensus 53 L~~~L~~gd~VeIit~~~~~ 72 (78)
T 3hvz_A 53 IDYKVKTGEIIDVLTTKELE 72 (78)
T ss_dssp TTCBCCTTCBEEEEECC---
T ss_pred CCcccCCCCEEEEEccCccc
Confidence 57899999999999987543
No 15
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=34.66 E-value=61 Score=21.21 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCC
Q psy2359 34 IMLGSVLSNAFKD 46 (137)
Q Consensus 34 ~lL~~A~~~~~~~ 46 (137)
--|.+|+.+-||+
T Consensus 33 EWLqAal~RKyp~ 45 (111)
T 1xg8_A 33 DWLQPLLKRKYPN 45 (111)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHhCcCCC
Confidence 3578899999998
No 16
>2fki_A Protein YJBR; NESG, GFT-alpha-beta, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: d.198.3.1
Probab=34.51 E-value=95 Score=20.20 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy2359 37 GSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAVP 100 (137)
Q Consensus 37 ~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~~~~p 100 (137)
+..+++.+|+ + ..++.. +..-+..+.++ ..+++++|..+-...-++|.+++|
T Consensus 57 ~~~L~~~~~~-i------~Payhm-nK~hWisv~ld----~~v~~~~l~~lI~~Sy~lv~~~lp 108 (126)
T 2fki_A 57 AELLRQQHSD-V------RPSRHL-NKAHWSTVYLD----GSLPDSQIYYLVDASYQQAVNLLP 108 (126)
T ss_dssp HHHHHHSCST-T------CCCCSS-CTTTEEEEECT----TTSCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhhCCC-e------ecCCcC-CCceeEEEEcC----CCCCHHHHHHHHHHHHHHHHhhCC
Confidence 4455666765 3 345455 33456888876 479999999999999999999987
No 17
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=30.05 E-value=1.4e+02 Score=20.74 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=40.8
Q ss_pred cCCCCChhhhHHHHHHHHHHHHHHHHHHcCC--CceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHH-HHHHHH
Q psy2359 16 FYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD--NVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRV-LSAEMV 92 (137)
Q Consensus 16 ~~~~~g~~~~~~y~~S~~~lL~~A~~~~~~~--~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~-Ie~~m~ 92 (137)
|..|+-......=-||+-||++.-+++-... ..++- -+||-==-.|||.-+. + ..+.+++.. +++-|+
T Consensus 40 ~~qPN~e~m~~~~iHTlEHL~A~~lRnh~~~~~~~~iI---d~sPMGCrTGFYl~l~-G-----~~~~~~v~~~~~~~l~ 110 (157)
T 1j98_A 40 FCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDII---DISPMGCQTGYYLVVS-G-----ETTSAEIVDLLEDTMK 110 (157)
T ss_dssp CSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTCSSEEEE---EEEECTTSSEEEEEEE-E-----CCCHHHHHHHHHHHHH
T ss_pred ecCCChhhCCcccchHHHHHHHHHHhcCccccCCCCEE---EeCCcCcccccEEEEe-C-----CCCHHHHHHHHHHHHH
Confidence 4444332335566899999999999986542 01221 1222211237998664 3 456666655 566666
Q ss_pred HHHH
Q psy2359 93 KLAY 96 (137)
Q Consensus 93 ~iI~ 96 (137)
.+..
T Consensus 111 ~il~ 114 (157)
T 1j98_A 111 EAVE 114 (157)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6653
No 18
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=23.39 E-value=72 Score=16.06 Aligned_cols=14 Identities=43% Similarity=0.477 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHH
Q psy2359 80 TSAELRVLSAEMVK 93 (137)
Q Consensus 80 t~edl~~Ie~~m~~ 93 (137)
++++++++++++++
T Consensus 13 tpeelkklkeeakk 26 (36)
T 2ki0_A 13 TPEELKKLKEEAKK 26 (36)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 78999999988874
No 19
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=22.88 E-value=1.3e+02 Score=18.28 Aligned_cols=27 Identities=33% Similarity=0.195 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCeEEEEeCHHHHHHHh
Q psy2359 89 AEMVKLAYEAVPFERLSISQDLAEALF 115 (137)
Q Consensus 89 ~~m~~iI~~~~pi~~~~v~~eeA~~~f 115 (137)
++++++|..-...-+.-+++++|.++=
T Consensus 35 kEAK~lVe~~P~~iKe~vsKeeAe~ik 61 (74)
T 1ctf_A 35 KEAKDLVESAPAALKEGVSKDDAEALK 61 (74)
T ss_dssp HHHHHHHHTCSEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHcCCCHHHHHHHH
Confidence 568889987777778889999998863
No 20
>2a1v_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; 2.15A {Deinococcus radiodurans} SCOP: d.198.3.1
Probab=20.23 E-value=2e+02 Score=19.15 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCceeeecccCCCcccCCcEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH-cCCC
Q psy2359 36 LGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAY-EAVP 100 (137)
Q Consensus 36 L~~A~~~~~~~~~~v~~~~~~~~~i~~~gfy~d~~~~~~~~~~it~edl~~Ie~~m~~iI~-~~~p 100 (137)
...++.+.+|+.+ ..++.. ++.-++.+.++ ..+++++|..+-...-++|. +++|
T Consensus 67 ~~~~L~~~~~~~i------~Payhm-nK~hWvsV~Ld----~~v~~~el~elI~~Sy~Lv~~~~Lp 121 (144)
T 2a1v_A 67 RGEELRQAHPQSI------APGYHL-NKKHWVTVTLD----GTVPAELLGELLRGSYLLVTKKGFT 121 (144)
T ss_dssp HHHHHHHHSTTTE------EECTTS-CTTTEEEEECS----SSSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCeE------ecCCcc-CCCeEEEEEcC----CCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3455667777312 245455 34456888776 47999999999999999998 8876
Done!