RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2359
         (137 letters)



>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
           second 'additional' domain {Escherichia coli [TaxId:
           562]}
          Length = 162

 Score = 25.5 bits (55), Expect = 2.1
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 26  RTFWRSCSIMLGSVLSNAFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELR 85
                SC+ +LG  +   +      ++   P        +  D+          T  ++ 
Sbjct: 7   EIIRHSCAHLLGHAIKQLWPH---TKMAIGPV-IDNGFYYDVDLD------RTLTQEDVE 56

Query: 86  VLSAEMVKLAYEAVPFERLSISQDLAEALFEHNKYKLE 123
            L   M +LA +     +  +S   A   F +     +
Sbjct: 57  ALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYK 94


>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 62

 Score = 23.8 bits (52), Expect = 3.5
 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 6/23 (26%)

Query: 115 FEHNKYKLEQIPSIVQQSIVASK 137
           F+ NK  +E+       S V++K
Sbjct: 28  FDTNKKLVEEF------STVSTK 44


>d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia
          coli [TaxId: 562]}
          Length = 309

 Score = 24.0 bits (51), Expect = 7.4
 Identities = 13/57 (22%), Positives = 21/57 (36%)

Query: 43 AFKDNVEVQLHSFPSPNVKSGSFVYDVQLSGVDNWKPTSAELRVLSAEMVKLAYEAV 99
            +  VE+  + F   N K+    Y  Q     +W     E  +    +V+LA  A 
Sbjct: 3  QQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAY 59


>d1qqp1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus)
           coat proteins {FMDV (Foot-and-mouth disease virus),
           strain bfs, 1860 [TaxId: 12110]}
          Length = 210

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 69  VQLSGVDNWKPTSAELRVLSAEMVKLAYEAVPFERLSI 106
           V+  G   W P  A  + L       AY   P  RL++
Sbjct: 80  VKHEGDLTWVPNGAPEKALDNTTNPTAYHKAPLTRLAL 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 478,737
Number of extensions: 19039
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 9
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)