BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2360
         (136 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl-
           Trna Synthetase
          Length = 88

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 46  LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105
           LP+  ++      +TPY  A  +S+ L D +V+A ++ V +WD+ RPLE DC L+LL F 
Sbjct: 16  LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNV-VWDLDRPLEEDCTLELLKFE 74

Query: 106 DSD 108
           D +
Sbjct: 75  DEE 77


>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL
           Dehydrogenase From Clostridium Thermocellum
          Length = 247

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 16/75 (21%)

Query: 13  NIVQKQNDIFNKE-----FKRQQNAVGRIEKINVTYKGLPEDAEL----------IMNKN 57
           N+V  + D+ N E      K   +A GRI+ I V   G+  D  +          ++N N
Sbjct: 56  NVVVAKGDVKNPEDVENMVKTAMDAFGRID-ILVNNAGITRDTLMLKMSEKDWDDVLNTN 114

Query: 58  LSTPYNCAQHMSEML 72
           L + Y C + +S+++
Sbjct: 115 LKSAYLCTKAVSKIM 129


>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
           Phosphoadenosine 5'-Phosphosulphate Synthetase 2
 pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
           Phosphoadenosine 5'-Phosphosulphate Synthetase 2
 pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
           Phosphoadenosine 5'-Phosphosulphate Synthetase 2
 pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
           Phosphoadenosine 5'-Phosphosulphate Synthetase 2
          Length = 198

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 47  PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVL 78
           PE  E ++  NLST  +C   + E+L +++++
Sbjct: 165 PETPERVLKTNLSTVSDCVHQVVELLQEQNIV 196


>pdb|3QB2|A Chain A, The Crystal Structure Of Immunity Factor For Spn (Ifs)
 pdb|3QB2|B Chain B, The Crystal Structure Of Immunity Factor For Spn (Ifs)
 pdb|3QB2|C Chain C, The Crystal Structure Of Immunity Factor For Spn (Ifs)
 pdb|3QB2|D Chain D, The Crystal Structure Of Immunity Factor For Spn (Ifs)
          Length = 187

 Score = 26.9 bits (58), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 42  TYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLES-DCELQ 100
           +Y G   D E+I+   +   +       +   + ++L   +  +  D+++ +++ + E  
Sbjct: 42  SYXGDISDPEVILEYGVYPAFIKGYTQLKANIEEALLEXSNSGQALDIYQAVQTLNAENX 101

Query: 101 LLHFYDSDPYHSNRTFWRSCSIMLGSVLSN---AFKDTH 136
           LL++Y+S P++ NR           S+L+N   A KD H
Sbjct: 102 LLNYYESLPFYLNRQ----------SILANITKALKDAH 130


>pdb|3PNT|B Chain B, Crystal Structure Of The Streptococcus Pyogenes Nad+
           Glycohydrolase Spn In Complex With Ifs, The Immunity
           Factor For Spn
 pdb|3PNT|D Chain D, Crystal Structure Of The Streptococcus Pyogenes Nad+
           Glycohydrolase Spn In Complex With Ifs, The Immunity
           Factor For Spn
          Length = 161

 Score = 26.6 bits (57), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 42  TYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLES-DCELQ 100
           +Y G   D E+I+   +   +       +   + ++L   +  +  D+++ +++ + E  
Sbjct: 42  SYXGDISDPEVILEYGVYPAFIKGYTQLKANIEEALLEXSNSGQALDIYQAVQTLNAENX 101

Query: 101 LLHFYDSDPYHSNRTFWRSCSIMLGSVLSN---AFKDTH 136
           LL++Y+S P++ NR           S+L+N   A KD H
Sbjct: 102 LLNYYESLPFYLNRQ----------SILANITKALKDAH 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,902,383
Number of Sequences: 62578
Number of extensions: 142317
Number of successful extensions: 312
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 6
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)