BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2360
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VUJ0|RM39_DROME 39S ribosomal protein L39, mitochondrial OS=Drosophila melanogaster
GN=mRpL39 PE=1 SV=2
Length = 333
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 96/123 (78%)
Query: 11 SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70
SS + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED L+MN N+STP+NCAQH+SE
Sbjct: 30 SSASLAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSE 89
Query: 71 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
C RS LALIDG WDMHRPL+ C LQLL+F+ S+P+ N+ FWR+CS MLG+ L+
Sbjct: 90 GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149
Query: 131 AFK 133
AFK
Sbjct: 150 AFK 152
>sp|Q9JKF7|RM39_MOUSE 39S ribosomal protein L39, mitochondrial OS=Mus musculus GN=Mrpl39
PE=2 SV=4
Length = 336
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 86/126 (68%), Gaps = 2/126 (1%)
Query: 12 SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQHMSE 70
+ + + +ND+FN+E RQ + R EKI V + G + + +MNKN+STPY+CA H+SE
Sbjct: 35 TELTEMRNDLFNREKSRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSE 94
Query: 71 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
C +S+LAL+DG + WDM++PL CE++ L F D DP N+ +WRSC++MLG V+
Sbjct: 95 WYCSKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDPDPKEVNKAYWRSCAMMLGCVIER 153
Query: 131 AFKDTH 136
AFKD +
Sbjct: 154 AFKDDY 159
>sp|Q9NYK5|RM39_HUMAN 39S ribosomal protein L39, mitochondrial OS=Homo sapiens GN=MRPL39
PE=1 SV=3
Length = 338
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 86/126 (68%), Gaps = 2/126 (1%)
Query: 12 SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQHMSE 70
+ + + +ND+FNKE RQ + R EKI V + G + + +MNKN+STPY+CA H+SE
Sbjct: 38 TELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSE 97
Query: 71 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
C +S+LAL+DG + WDM++PL CE++ L F D DP N+ +WRSC++M+G V+
Sbjct: 98 WYCRKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIER 156
Query: 131 AFKDTH 136
AFKD +
Sbjct: 157 AFKDEY 162
>sp|Q54J66|SYTC1_DICDI Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium
discoideum GN=thrS1 PE=3 SV=1
Length = 710
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 37 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 96
E INVT LP+ + KN +TPY+ A+ +S L D V + ++G ++WD+ RPLE+D
Sbjct: 74 EPINVT---LPDGKVVAGIKNKTTPYDIAKGISRGLADSIVSSKVNGEQIWDISRPLEAD 130
Query: 97 CELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
C LQL F D +TFW S + +LG + +
Sbjct: 131 CNLQLCKF---DSEEGKKTFWHSSAHILGQAMERIY 163
>sp|P87144|SYTC_SCHPO Threonine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ths1 PE=3 SV=1
Length = 703
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 3 CELGNRQISSNIVQKQNDIFNK---EFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLS 59
L N + +Q + D+F+K E+K R E+I++T LP+ + +
Sbjct: 11 ASLDNLSLEIPFIQHRLDLFDKLQKEYKESLATKPR-EEIDIT---LPDGKVIKGTSWET 66
Query: 60 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 119
TP + A +S+ L DR +A+++G + WD+ RPLE+ C L+L F D + R FW S
Sbjct: 67 TPISIAASISKGLADRVTVAIVNG-EPWDLTRPLEASCTLKLCDFNDPE---GKRVFWHS 122
Query: 120 CSIMLGSVLSNAF 132
+ +LG +F
Sbjct: 123 SAHILGEATELSF 135
>sp|Q68FW7|SYTM_RAT Threonine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Tars2
PE=2 SV=1
Length = 723
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 46 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105
LPE ++ +TPY AQ +S L D +V A ++G +L+D+ RPLE+DC L+ L F
Sbjct: 70 LPEGQKVDAVAWNTTPYQLAQQISSTLADTAVAAEVNG-ELYDLDRPLETDCHLRFLTF- 127
Query: 106 DSDPYHSNRTFWRSCSIMLGS 126
D FWRS + +LG+
Sbjct: 128 --DSPEGKAVFWRSSAHVLGA 146
>sp|Q9D0R2|SYTC_MOUSE Threonine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Tars PE=1
SV=2
Length = 722
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
I VT LP+ ++ +TPY A +S+ L D +V+A ++ V +WD+ RPLE+DC
Sbjct: 82 IKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKV-VWDLDRPLETDCT 137
Query: 99 LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
L+LL F D + + +W S + ++G + +
Sbjct: 138 LELLKFEDEE---AQAVYWHSSAHIMGEAMERVY 168
>sp|Q5XHY5|SYTC_RAT Threonine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Tars
PE=2 SV=1
Length = 695
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
I VT LP+ ++ +TPY A +S+ L D +V+A ++ V +WD+ RPLE+DC
Sbjct: 55 IKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKV-VWDLDRPLETDCT 110
Query: 99 LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
L+LL F D + + +W S + ++G + +
Sbjct: 111 LELLKFEDEE---AQAVYWHSSAHIMGEAMERVY 141
>sp|P26639|SYTC_HUMAN Threonine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=TARS PE=1
SV=3
Length = 723
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
I VT LP+ ++ +TPY A +S+ L D +V+A ++ V +WD+ RPLE DC
Sbjct: 83 IKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNV-VWDLDRPLEEDCT 138
Query: 99 LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
L+LL F D + + +W S + ++G + +
Sbjct: 139 LELLKFEDEE---AQAVYWHSSAHIMGEAMERVY 169
>sp|Q3ZBV8|SYTC_BOVIN Threonine--tRNA ligase, cytoplasmic OS=Bos taurus GN=TARS PE=2 SV=1
Length = 723
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
I VT LP+ ++ +TPY A +S+ L D +V+A ++ +WD+ RPLE DC
Sbjct: 83 IKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNKA-VWDLDRPLEEDCT 138
Query: 99 LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
L+LL F D + + +W S + ++G + +
Sbjct: 139 LELLKFEDEE---AQAVYWHSSAHIMGEAMERVY 169
>sp|O04630|SYTM_ARATH Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana
GN=THRRS PE=2 SV=3
Length = 709
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+TP + A +S+ L + ++++ +D V LWDM+RPLE DC+L+L F DSD T W
Sbjct: 92 TTPMDIAAQISKGLANSALISAVDDV-LWDMNRPLEGDCKLELFKF-DSD--KGRDTLWH 147
Query: 119 SCSIMLGSVLSNAF 132
S + +LG L +
Sbjct: 148 SSAHILGQALEQEY 161
>sp|A6QNM8|SYTC2_BOVIN Probable threonine--tRNA ligase 2, cytoplasmic OS=Bos taurus
GN=TARSL2 PE=2 SV=1
Length = 724
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+TPY A +S+ L + +V+A ++G +LWD+ RPLE D ++LL F D + + +W
Sbjct: 177 TTPYQVAAEISQELAETTVVAKVNG-ELWDLDRPLEGDATVELLTFEDEE---ARAVYWH 232
Query: 119 SCSIMLGSVL 128
S + +LG L
Sbjct: 233 SSAHVLGEAL 242
>sp|A2RTX5|SYTC2_HUMAN Probable threonine--tRNA ligase 2, cytoplasmic OS=Homo sapiens
GN=TARSL2 PE=1 SV=1
Length = 802
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+TPY A +S+ L + +V+A ++G +LWD+ RPLE D L+LL F D + +W
Sbjct: 179 TTPYQVAAEISQELAESTVIAKVNG-ELWDLDRPLEGDSSLELLTF---DNEEAQAVYWH 234
Query: 119 SCSIMLGSVL 128
S + +LG +
Sbjct: 235 SSAHILGEAM 244
>sp|Q8BLY2|SYTC2_MOUSE Probable threonine--tRNA ligase 2, cytoplasmic OS=Mus musculus
GN=Tarsl2 PE=2 SV=1
Length = 790
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+TPY A +S+ L + +V+A ++GV LWD+ RPLE D ++LL F D + +W
Sbjct: 167 TTPYQVAAGISKELAEHTVIAKVNGV-LWDLDRPLEGDSTVELLMF---DNEEAQAVYWH 222
Query: 119 SCSIMLGSVL 128
S + +LG +
Sbjct: 223 SSAHILGEAM 232
>sp|Q3UQ84|SYTM_MOUSE Threonine--tRNA ligase, mitochondrial OS=Mus musculus GN=Tars2 PE=2
SV=1
Length = 723
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 46 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105
LPE ++ +TPY A +S L D +V A ++G +L+D+ RPLE+DC L+ L F
Sbjct: 70 LPEGQKVDAVAWNTTPYQLAHQISVTLADTAVAAEVNG-ELYDLDRPLETDCHLRFLTF- 127
Query: 106 DSDPYHSNRTFWRSCSIMLGS 126
D FW S + +LG+
Sbjct: 128 --DSPEGKAVFWHSSAHVLGA 146
>sp|Q8GZ45|SYTC_ARATH Probable threonine--tRNA ligase, cytoplasmic OS=Arabidopsis
thaliana GN=At1g17960 PE=2 SV=2
Length = 458
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 46 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105
LP+ E + ++P + A +S+ L ++++ ++ V LWDM+RPLE DC L++ F
Sbjct: 48 LPDGIEKEGRRWETSPMDIAVQISKGLAKSALVSSVNHV-LWDMNRPLEGDCSLEIFGF- 105
Query: 106 DSDPYHSNRTFWRSCSIMLGSVLSNAF 132
DSD TFW S + +LG L +
Sbjct: 106 DSD--QGRNTFWHSSAHILGQALEQEY 130
>sp|P52709|SYTC_CAEEL Threonine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=trs-1 PE=2 SV=1
Length = 725
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+TP+ A+ +S+ L + +V+A ++G +WD+ RP E + +L+LL F D + + + FW
Sbjct: 99 TTPFEIAERISKGLAEAAVIAKVNGA-VWDLDRPFEGNAKLELLKFDDDE---AKQVFWH 154
Query: 119 SCSIMLGSVL 128
S + +LG +
Sbjct: 155 SSAHVLGEAM 164
>sp|Q0V9S0|SYTC2_XENTR Probable threonine--tRNA ligase 2, cytoplasmic OS=Xenopus
tropicalis GN=tarsl2 PE=2 SV=1
Length = 814
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+TPY A +S+ L D V+A ++ +LWD+ RPLE D ++LL F D + +W
Sbjct: 191 TTPYQVAIGISKGLADNVVIAKVNN-ELWDLDRPLEQDSNVELLKF---DSEEAQAVYWH 246
Query: 119 SCSIMLGSVLSNAF 132
S + +LG + N +
Sbjct: 247 SSAHILGETMENFY 260
>sp|Q9BW92|SYTM_HUMAN Threonine--tRNA ligase, mitochondrial OS=Homo sapiens GN=TARS2 PE=1
SV=1
Length = 718
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+TPY A+ +S L D +V A ++G + +D+ RPLE+D +L+ L F D FW
Sbjct: 78 TTPYQLARQISSTLADTAVAAQVNG-EPYDLERPLETDSDLRFLTF---DSPEGKAVFWH 133
Query: 119 SCSIMLGS 126
S + +LG+
Sbjct: 134 SSTHVLGA 141
>sp|P04801|SYTC_YEAST Threonine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=THS1 PE=1 SV=2
Length = 734
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDC----ELQLLHFYDSDPYHSNR 114
+TP + A+ +S+ L DR ++ ++G +LWD+ RP E + +L+LL F +SD +
Sbjct: 92 TTPMDIAKGISKSLADRLCISKVNG-QLWDLDRPFEGEANEEIKLELLDF-ESD--EGKK 147
Query: 115 TFWRSCSIMLG 125
FW S + +LG
Sbjct: 148 VFWHSSAHVLG 158
>sp|B6YQ95|SYT_AZOPC Threonine--tRNA ligase OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=thrS PE=3 SV=1
Length = 648
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+TP A+ +S L + + A ++G ++WD+ RP+ + ++L Y + + RTFW
Sbjct: 18 TTPMQIAESISCRLAEEILSANVNG-EMWDLSRPINENASVKL---YKWEDFEGKRTFWH 73
Query: 119 SCSIMLGSVLSNAFKDTH 136
S + +L L + + H
Sbjct: 74 SSAHLLAESLQELYPNIH 91
>sp|B2RJD6|SYT_PORG3 Threonine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
33277 / DSM 20709 / JCM 12257) GN=thrS PE=3 SV=1
Length = 653
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 60 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 119
T ++ A +S L + A ++G ++WD+HRP+ D E++L + D++ H+ FW S
Sbjct: 19 TGWDIAGSISPRLQQDVLAAGVNG-QVWDLHRPINEDAEVKLFKWDDAEGKHA---FWHS 74
Query: 120 CSIMLGSVLSNAF 132
+ ++ L +
Sbjct: 75 SAHLMAEALEELY 87
>sp|A6L9S2|SYT_PARD8 Threonine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=thrS PE=3 SV=1
Length = 651
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+T A+ +S L + A ++G ++WD+ RP+ D ++LL + D + H+ FW
Sbjct: 18 TTAMQIAESISSRLAQEVLAASVNG-EVWDLSRPINDDATVKLLKWEDEEGKHA---FWH 73
Query: 119 SCSIMLGSVLSNAF 132
S + ++ L +
Sbjct: 74 SSAHLMAEALQELY 87
>sp|B1L7W6|SYT_THESQ Threonine--tRNA ligase OS=Thermotoga sp. (strain RQ2) GN=thrS PE=3
SV=1
Length = 640
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 46 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105
LP+ E ++ + TP A+ E+ +++ A+++G +LWD+ RP+E+DCEL+L+
Sbjct: 7 LPDGKEKEYDRGI-TPAEIAK---ELGVKKAIGAVVNG-ELWDLKRPIENDCELRLVTLE 61
Query: 106 DSD 108
D +
Sbjct: 62 DPE 64
>sp|A5IJ45|SYT_THEP1 Threonine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=thrS PE=3 SV=1
Length = 640
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 46 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105
LP+ E ++ + TP A+ E+ +++ A+++G +LWD+ RP+E+DCEL+L+
Sbjct: 7 LPDGKEKEYDRGI-TPAEIAK---ELGVKKAIGAVVNG-ELWDLKRPIENDCELRLVTLE 61
Query: 106 DSD 108
D +
Sbjct: 62 DPE 64
>sp|Q9WZJ9|SYT_THEMA Threonine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=thrS PE=3 SV=1
Length = 640
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 46 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105
LP+ E ++ + TP A+ E+ +++ A+++G +LWD+ RP+E+DCEL+L+
Sbjct: 7 LPDGKEKEYDRGI-TPAEIAK---ELGIKKAIGAVVNG-ELWDLKRPIENDCELRLVTLE 61
Query: 106 DSD 108
D +
Sbjct: 62 DPE 64
>sp|Q0BXC2|SYT_HYPNA Threonine--tRNA ligase OS=Hyphomonas neptunium (strain ATCC 15444)
GN=thrS PE=3 SV=1
Length = 657
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDP 109
++P + A+ +S+ L +++ A +DG ++WD+ RPLE D + ++ D DP
Sbjct: 18 ASPLDVAESISKSLAKKALAAKVDG-QMWDLVRPLEGDASVAII--TDRDP 65
>sp|Q11UK3|SYT_CYTH3 Threonine--tRNA ligase OS=Cytophaga hutchinsonii (strain ATCC 33406
/ NCIMB 9469) GN=thrS PE=3 SV=1
Length = 645
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 60 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 119
T A +SE L R+VLA ++WD R + SD +QLL + D++ TFW S
Sbjct: 19 TSMGIALSISEGLA-RNVLAAKVNGEIWDASRAITSDSTVQLLTWNDTE---GKSTFWHS 74
Query: 120 CSIMLGSVLSNAFKDT 135
+ +L L + T
Sbjct: 75 SAHLLAEALEALYPGT 90
>sp|Q7MVQ5|SYT_PORGI Threonine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=thrS PE=3 SV=1
Length = 653
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 60 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 119
T ++ A +S L + A ++G ++WD+HR + D E++L + D++ H+ FW S
Sbjct: 19 TGWDIAGSISPRLQQDVLAAGVNG-QVWDLHRQINEDAEVKLFKWDDAEGKHA---FWHS 74
Query: 120 CSIMLGSVLSNAF 132
+ ++ L +
Sbjct: 75 SAHLMAEALEELY 87
>sp|Q8R9A4|SYT_THETN Threonine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=thrS PE=3
SV=1
Length = 644
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 60 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 119
T Y A+ +S+ L +V +G K+ +++ +E D EL++L F D + + +W +
Sbjct: 28 TVYEIAKSISDKLAREAVGGKFNG-KIVELNTKIEEDGELEILTFEDEE---GKKIYWHT 83
Query: 120 CSIMLGSVLSNAFKD 134
S +L + FKD
Sbjct: 84 SSHILAQAVKRLFKD 98
>sp|B0S169|SYT_FINM2 Threonine--tRNA ligase OS=Finegoldia magna (strain ATCC 29328)
GN=thrS PE=3 SV=1
Length = 634
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 63 NCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSI 122
+ + +SE L V A++DG K+ + ++SDCE+Q + F D + + FW + S
Sbjct: 22 DVCKSISEGLARDCVGAVVDG-KIMGLMETIDSDCEVQFVKFDDDE---GKQVFWHTSSH 77
Query: 123 MLGSVLSNAFKDT 135
++ + + T
Sbjct: 78 LMAYAIQRLYPGT 90
>sp|Q8SRH2|SYTC_ENCCU Probable threonine--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_1570 PE=3 SV=1
Length = 640
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 17/83 (20%)
Query: 59 STPYNCAQHMSEMLCD-----RSVLAL-IDGVKLWDMHRPLESDCELQLLHFYDSDPYHS 112
+TPY+ +LCD + V++ IDGV DM + DC+L+L+ F D +
Sbjct: 21 TTPYD-------ILCDYFKDRKDVISCRIDGV-YSDMSSEILKDCKLELMTFEDDG---A 69
Query: 113 NRTFWRSCSIMLGSVLSNAFKDT 135
FW S + +LG+ L N + D
Sbjct: 70 RDIFWHSSAHVLGNALVNLYPDA 92
>sp|Q0AM08|SYT_MARMM Threonine--tRNA ligase OS=Maricaulis maris (strain MCS10) GN=thrS
PE=3 SV=1
Length = 644
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
INVT LP+ ++ + ++P + A +S+ L +++A +DG + WD+ RPL+ D +
Sbjct: 2 INVT---LPDGSKRELPDG-ASPLDLAADISKSLAKAAIIATVDG-QDWDLKRPLDGDAQ 56
Query: 99 LQLL 102
+ ++
Sbjct: 57 VAII 60
>sp|Q97GK4|SYT_CLOAB Threonine--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=thrS PE=3 SV=1
Length = 637
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
I VT K D +++ +N +TP + A+ +S L +++ A I+G K ++ ++ DC
Sbjct: 2 IKVTLK----DGKVMEFENTTTPGDVAKAISPGLYKKAISAKING-KRAELMTNIDKDCN 56
Query: 99 LQLLHFYDSD 108
L++L F D D
Sbjct: 57 LEILTFDDED 66
>sp|Q8MP20|SYTC2_DICDI Probable threonine--tRNA ligase 2, cytoplasmic OS=Dictyostelium
discoideum GN=thrS2 PE=3 SV=1
Length = 698
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 49 DAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLE---SDCELQLLHFY 105
D + ++ TP A +++ + +S+L+ ++G KL M +E D ++ L+F
Sbjct: 46 DGRIFKFEDKQTPLTIANKINKTIGKQSILSRLNGNKLISMKEIIEMSGKDYNIEFLNFE 105
Query: 106 DSDPYHSNRT--FWRSCSIMLGSVLSNAFKD 134
+ HS+ FW S S++L FK+
Sbjct: 106 E----HSDARICFWNSSSLVLARATMEYFKN 132
>sp|Q7VDS9|CINAL_PROMA CinA-like protein OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=cinA PE=3 SV=1
Length = 423
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 15 VQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTP 61
+ K NDI K+ KR+ N+ + + N LPE AE+I NK+ + P
Sbjct: 97 LTKNNDIL-KDIKRKLNSHSHVSENNFKQALLPEGAEIIPNKSGTAP 142
>sp|O27605|NIFD_METTH Nitrogenase molybdenum-iron protein alpha chain
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=nifD PE=3 SV=1
Length = 469
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 13 NIVQKQNDIFNKEF-KRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEM 71
N+ + D F E+ KR A G Y G+PE AE ++ + +++
Sbjct: 281 NVPYMKVDFFGIEYCKRNLMATGE-------YFGIPERAEEVIKDRMEKIGPEIEYLRNK 333
Query: 72 LCDRSVLALIDGVKLWDMHRPLESDCELQLL 102
L + V G K W + RPLE + ++++
Sbjct: 334 LAGKKVWVFSGGPKNWHLPRPLEDELGMEVV 364
>sp|Q50788|NIFD_METTM Nitrogenase molybdenum-iron protein alpha chain
OS=Methanothermobacter marburgensis (strain DSM 2133 /
14651 / NBRC 100331 / OCM 82 / Marburg) GN=nifD PE=3
SV=3
Length = 470
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 20 DIFNKEFKRQQ-NAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVL 78
D F E+ R+ A+G Y G+PE AE ++ + Q+ + L + V
Sbjct: 288 DFFGIEYCRKNLMAIGE-------YFGIPERAERVIEDRMKKIGPEIQYFKDKLRGKRVW 340
Query: 79 ALIDGVKLWDMHRPLESDCELQLL 102
G K W + RPLE + ++++
Sbjct: 341 VFSGGPKNWHLPRPLEDELGMEVV 364
>sp|B9KAN7|SYT_THENN Threonine--tRNA ligase OS=Thermotoga neapolitana (strain ATCC 49049
/ DSM 4359 / NS-E) GN=thrS PE=3 SV=1
Length = 640
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 75 RSVLALIDGVKLWDMHRPLESDCELQLLHFYDSD 108
+ V+ + +LWD+ RPLE DC ++ + D +
Sbjct: 31 KKVIGAVVDEELWDLKRPLERDCRIRFVTLEDPE 64
>sp|A8GML4|SYT_RICAH Threonine--tRNA ligase OS=Rickettsia akari (strain Hartford)
GN=thrS PE=3 SV=1
Length = 635
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
IN+++ D + +N T Y A +S L +++A I+G +L D+ +E+DC+
Sbjct: 2 INISFP----DGSVRQFENDITAYEVANAISMSLAKAAMVAEING-ELKDLSTVIENDCK 56
Query: 99 LQLLHFYDS--------DPYH----SNRTFWRSCSIMLGSVLSNAF 132
L++L DS D H + + + + +G + N F
Sbjct: 57 LRILTAKDSECLEIIRHDAAHIIAEAAKELFPDIQVTIGPAIENGF 102
>sp|Q86HG9|Y9871_DICDI Probable serine/threonine-protein kinase DDB_G0271682
OS=Dictyostelium discoideum GN=DDB_G0271682 PE=3 SV=2
Length = 1024
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 2 PCELGNRQISSNIVQKQNDIFNKEFK---RQQNAVGRIEKINVTYKGLPEDAELIMNKNL 58
P ++ I SNI+ + + F + K R + E NVT+ L ++ + K+
Sbjct: 46 PIQVFQLNIGSNIIGRGSPSFLNDIKISRRHAEIIVSAEVGNVTFNQLGQNHSTLYRKD- 104
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMH 90
TP + +S L D +++L DG + +H
Sbjct: 105 QTPIKMVRGISNQLLDDDLISLYDGSIPFSIH 136
>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1
SV=2
Length = 1638
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 25 EFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE-MLCDRSVLALIDG 83
EF++ AVG V+YKG P+ L+ N+ +T +N E ++ D++VLA I
Sbjct: 840 EFEKWAPAVG-----VVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQ- 893
Query: 84 VKLW------DMHRPLESDCEL-QLLHFYDSDPY 110
W + HR C+L Q+L+ + PY
Sbjct: 894 ---WKYMIIDEGHRMKNHHCKLTQVLNTHYIAPY 924
>sp|Q5UX65|SYT_HALMA Threonine--tRNA ligase OS=Haloarcula marismortui (strain ATCC 43049
/ DSM 3752 / JCM 8966 / VKM B-1809) GN=thrS PE=3 SV=2
Length = 642
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 46 LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLL 102
LP+ L + + ST + A + L D +V ++DG +L D H PL +D EL+++
Sbjct: 8 LPDGTPLEVERG-STVEDVAYEIGPGLGDDTVAGVVDG-ELVDKHAPLTADVELEIV 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,980,141
Number of Sequences: 539616
Number of extensions: 1810800
Number of successful extensions: 4294
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 4249
Number of HSP's gapped (non-prelim): 53
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)