Query psy2360
Match_columns 136
No_of_seqs 111 out of 1216
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 23:00:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02908 threonyl-tRNA synthet 99.9 7.5E-27 1.6E-31 208.2 13.4 115 12-133 23-139 (686)
2 PRK12444 threonyl-tRNA synthet 99.8 2.6E-18 5.7E-23 152.1 10.1 89 38-134 5-93 (639)
3 PRK00413 thrS threonyl-tRNA sy 99.7 6.2E-17 1.4E-21 142.8 9.8 88 39-134 2-89 (638)
4 KOG1637|consensus 99.7 7.6E-18 1.7E-22 143.9 1.9 82 47-134 6-87 (560)
5 PF02824 TGS: TGS domain; Int 99.4 7.2E-13 1.6E-17 84.9 7.3 60 39-103 1-60 (60)
6 cd01667 TGS_ThrRS_N TGS _ThrRS 99.1 6.7E-10 1.4E-14 68.1 7.0 60 40-104 2-61 (61)
7 cd01616 TGS The TGS domain, na 98.8 3.3E-08 7.1E-13 60.0 6.5 55 47-103 6-60 (60)
8 cd01668 TGS_RelA_SpoT TGS_RelA 98.6 3.2E-07 6.9E-12 57.0 6.6 55 47-103 6-60 (60)
9 COG0441 ThrS Threonyl-tRNA syn 97.9 8.7E-06 1.9E-10 72.5 4.3 46 76-134 2-47 (589)
10 COG0317 SpoT Guanosine polypho 97.5 0.0008 1.7E-08 61.2 9.2 61 47-110 394-454 (701)
11 PRK11092 bifunctional (p)ppGpp 97.4 0.0003 6.5E-09 64.0 6.4 59 47-107 393-451 (702)
12 PRK05659 sulfur carrier protei 97.4 0.0009 1.9E-08 42.7 6.4 58 39-104 1-62 (66)
13 PRK07440 hypothetical protein; 97.3 0.0011 2.5E-08 43.4 6.5 59 38-104 4-66 (70)
14 PRK08364 sulfur carrier protei 97.2 0.0016 3.5E-08 42.5 6.4 59 38-104 4-66 (70)
15 cd00565 ThiS ThiaminS ubiquiti 97.2 0.0014 3E-08 41.9 5.6 56 41-104 2-61 (65)
16 PRK07696 sulfur carrier protei 97.1 0.002 4.4E-08 41.8 6.0 59 39-104 1-63 (67)
17 PLN02837 threonine-tRNA ligase 97.1 0.00055 1.2E-08 61.3 4.1 36 96-134 29-64 (614)
18 PRK10872 relA (p)ppGpp synthet 97.1 0.0019 4E-08 59.3 7.5 59 47-107 411-469 (743)
19 PRK08053 sulfur carrier protei 97.0 0.0035 7.6E-08 40.3 6.6 58 39-104 1-62 (66)
20 PRK06944 sulfur carrier protei 97.0 0.0038 8.3E-08 39.6 6.4 57 39-104 1-61 (65)
21 TIGR00691 spoT_relA (p)ppGpp s 97.0 0.0041 9E-08 56.5 8.5 59 47-107 367-425 (683)
22 COG2104 ThiS Sulfur transfer p 96.9 0.0046 1E-07 40.6 6.4 59 38-104 2-64 (68)
23 PRK06488 sulfur carrier protei 96.9 0.0046 1E-07 39.5 6.1 57 39-104 1-61 (65)
24 PRK06083 sulfur carrier protei 96.7 0.0096 2.1E-07 40.5 6.8 62 35-104 15-80 (84)
25 PRK06437 hypothetical protein; 96.6 0.011 2.4E-07 38.3 6.2 51 50-104 13-63 (67)
26 PRK05863 sulfur carrier protei 96.2 0.016 3.5E-07 37.1 5.3 58 39-104 1-61 (65)
27 TIGR01683 thiS thiamine biosyn 96.1 0.022 4.8E-07 36.2 5.6 53 48-104 4-60 (64)
28 PRK11840 bifunctional sulfur c 95.3 0.056 1.2E-06 45.3 6.3 58 39-104 1-62 (326)
29 cd00754 MoaD Ubiquitin domain 95.0 0.087 1.9E-06 34.1 5.4 52 51-104 19-76 (80)
30 PF02597 ThiS: ThiS family; I 94.6 0.14 3E-06 32.9 5.6 52 51-104 15-73 (77)
31 PLN02799 Molybdopterin synthas 94.6 0.12 2.6E-06 34.1 5.3 55 48-104 19-78 (82)
32 PRK01777 hypothetical protein; 94.4 0.25 5.4E-06 34.3 6.7 73 36-110 1-82 (95)
33 PF14453 ThiS-like: ThiS-like 93.6 0.4 8.6E-06 30.5 5.9 55 39-103 1-55 (57)
34 cd01666 TGS_DRG_C TGS_DRG_C: 92.8 0.38 8.1E-06 32.0 5.3 51 51-103 18-75 (75)
35 cd01669 TGS_Ygr210_C TGS_Ygr21 92.0 0.51 1.1E-05 31.4 5.1 50 51-103 24-76 (76)
36 TIGR01682 moaD molybdopterin c 91.8 0.72 1.5E-05 30.2 5.7 52 51-103 19-75 (80)
37 PRK01584 alanyl-tRNA synthetas 86.2 0.65 1.4E-05 42.0 2.9 21 114-134 453-473 (594)
38 PRK11130 moaD molybdopterin sy 85.4 4.6 9.9E-05 26.5 6.1 45 58-103 25-76 (81)
39 TIGR01687 moaD_arch MoaD famil 84.1 5.5 0.00012 26.2 6.1 45 58-103 24-83 (88)
40 PF14451 Ub-Mut7C: Mut7-C ubiq 77.3 7.6 0.00016 26.1 4.9 50 52-104 27-76 (81)
41 cd04938 TGS_Obg-like TGS_Obg-l 76.0 13 0.00027 24.6 5.7 51 51-103 25-76 (76)
42 PTZ00305 NADH:ubiquinone oxido 69.7 18 0.00038 30.2 6.3 77 38-125 68-160 (297)
43 PRK00252 alaS alanyl-tRNA synt 64.7 4.9 0.00011 37.8 2.3 21 114-134 549-569 (865)
44 PRK07569 bidirectional hydroge 62.8 16 0.00035 28.7 4.7 76 36-124 1-92 (234)
45 TIGR00344 alaS alanine--tRNA l 60.8 8.1 0.00018 36.4 3.0 21 114-134 556-576 (851)
46 PF13510 Fer2_4: 2Fe-2S iron-s 59.5 15 0.00032 24.3 3.4 28 38-70 3-30 (82)
47 COG1977 MoaD Molybdopterin con 57.6 19 0.00041 23.9 3.7 44 59-103 28-79 (84)
48 COG1034 NuoG NADH dehydrogenas 49.2 43 0.00093 31.1 5.6 74 39-124 2-91 (693)
49 PLN02900 alanyl-tRNA synthetas 47.7 18 0.00039 34.6 3.0 21 114-134 594-614 (936)
50 PRK09130 NADH dehydrogenase su 45.3 61 0.0013 29.8 6.0 76 39-125 2-93 (687)
51 PF11316 Rhamno_transf: Putati 44.9 23 0.0005 28.2 2.9 28 1-28 10-49 (234)
52 PLN02961 alanine-tRNA ligase 44.3 14 0.0003 29.0 1.5 20 114-133 82-102 (223)
53 PRK13902 alaS alanyl-tRNA synt 44.0 19 0.00042 34.2 2.6 21 114-134 589-609 (900)
54 TIGR03683 A-tRNA_syn_arch alan 42.3 25 0.00053 33.5 3.1 22 113-134 592-613 (902)
55 PF09836 DUF2063: Uncharacteri 37.9 43 0.00093 22.3 3.0 28 104-134 27-54 (94)
56 PRK08493 NADH dehydrogenase su 36.4 1.6E+02 0.0034 27.9 7.3 54 39-97 2-68 (819)
57 TIGR00597 rad10 DNA repair pro 34.9 24 0.00053 25.3 1.4 21 3-23 43-63 (112)
58 PF07801 DUF1647: Protein of u 34.2 59 0.0013 24.2 3.5 45 82-135 46-90 (142)
59 PRK12814 putative NADPH-depend 34.2 2.3E+02 0.0051 25.6 7.9 60 36-101 1-76 (652)
60 KOG0010|consensus 34.2 89 0.0019 27.9 5.0 65 38-104 15-86 (493)
61 COG2872 Predicted metal-depend 33.7 28 0.0006 28.1 1.7 20 114-133 95-114 (241)
62 PF14452 Multi_ubiq: Multiubiq 32.9 1.3E+02 0.0028 19.0 6.9 32 39-74 3-34 (72)
63 PF06616 BsuBI_PstI_RE: BsuBI/ 32.8 1.1E+02 0.0024 25.7 5.1 54 24-81 132-187 (306)
64 cd01764 Urm1 Urm1-like ubuitin 29.5 1.4E+02 0.003 20.2 4.5 45 58-103 28-89 (94)
65 PRK13033 formyl peptide recept 28.5 89 0.0019 22.4 3.4 37 60-96 75-115 (133)
66 COG0634 Hpt Hypoxanthine-guani 27.9 52 0.0011 25.5 2.3 17 88-104 52-68 (178)
67 PF14009 DUF4228: Domain of un 27.5 97 0.0021 22.2 3.7 29 38-70 17-45 (181)
68 PRK09129 NADH dehydrogenase su 27.1 1E+02 0.0023 28.3 4.5 41 39-84 2-55 (776)
69 PRK07860 NADH dehydrogenase su 26.9 1.1E+02 0.0023 28.6 4.6 42 38-84 4-58 (797)
70 PF03658 Ub-RnfH: RnfH family 26.8 1.6E+02 0.0036 19.9 4.4 51 51-103 17-72 (84)
71 PF03948 Ribosomal_L9_C: Ribos 26.8 76 0.0016 21.3 2.7 49 39-97 16-64 (87)
72 PRK00969 hypothetical protein; 25.1 1.2E+02 0.0027 27.1 4.4 41 39-84 2-42 (508)
73 PF03990 DUF348: Domain of unk 24.7 1.5E+02 0.0032 17.0 3.9 29 39-71 2-30 (43)
74 PRK09270 nucleoside triphospha 24.6 2.8E+02 0.0062 21.2 6.0 47 16-68 10-56 (229)
75 KOG1680|consensus 23.5 73 0.0016 26.5 2.5 46 87-135 35-80 (290)
76 PF06787 UPF0254: Uncharacteri 23.1 99 0.0021 23.5 3.0 38 92-136 64-101 (160)
77 COG3383 Uncharacterized anaero 22.3 2.1E+02 0.0046 27.4 5.5 54 39-98 6-73 (978)
78 KOG1769|consensus 21.8 2E+02 0.0043 20.2 4.1 54 37-92 19-76 (99)
79 PF03416 Peptidase_C54: Peptid 21.3 1.2E+02 0.0026 24.6 3.4 27 104-133 30-56 (278)
80 PF10354 DUF2431: Domain of un 20.9 3.6E+02 0.0078 20.0 6.6 60 1-67 83-142 (166)
No 1
>PLN02908 threonyl-tRNA synthetase
Probab=99.94 E-value=7.5e-27 Score=208.22 Aligned_cols=115 Identities=37% Similarity=0.634 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc--CcCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec
Q psy2360 12 SNIVQKQNDIFNKEFKRQQNAVG--RIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM 89 (136)
Q Consensus 12 ~~~~~~r~~lf~~~~~~~~~~~~--~~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL 89 (136)
|.|+++|++||++||++|+++++ +.++|+|++ +||+.+++++++|||.+||+++++.+++.+++|+|||+ +|||
T Consensus 23 ~~~~~~r~~~f~~~~~~~~~~~~~~~~~~i~i~~---~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~-l~dL 98 (686)
T PLN02908 23 SAVIKKRIELFEKIQARQLARLESAGGDPIKVTL---PDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGV-LWDM 98 (686)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhccCCceEEEe---CCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCE-Eeec
Confidence 38999999999999999999998 447899999 89999999887899999999999999999999999999 9999
Q ss_pred ccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcC
Q psy2360 90 HRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFK 133 (136)
Q Consensus 90 ~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp 133 (136)
++|+++||+|+|++++|++|+ ++||||++|||++|++++|+
T Consensus 99 ~~~l~~d~~le~l~~~~~eg~---~~y~hS~ahlL~~A~~~~~~ 139 (686)
T PLN02908 99 TRPLEGDCKLKLFKFDDDEGR---DTFWHSSAHILGEALELEYG 139 (686)
T ss_pred CccccCCCeeEEeccccHHHH---HHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999 99999999999999999994
No 2
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.76 E-value=2.6e-18 Score=152.15 Aligned_cols=89 Identities=20% Similarity=0.319 Sum_probs=84.7
Q ss_pred ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHH
Q psy2360 38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFW 117 (136)
Q Consensus 38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyr 117 (136)
.++|++ +||+.++++. ++|+.+||+++++.+.+.+++|+|||+ ++||++++++||+|+|++++|++|. ++||
T Consensus 5 mi~i~~---~~~~~~~~~~-g~t~~~ia~~~~~~~~~~iv~a~vn~~-l~dL~~~i~~d~~i~fv~~~~~~g~---~iy~ 76 (639)
T PRK12444 5 MIEIKF---PDGSVKEFVK-GITLEEIAGSISSSLKKKAVAGKVNDK-LYDLRRNLEEDAEVEIITIDSNEGV---EIAR 76 (639)
T ss_pred CeEEEe---CCCCEEEecC-CCCHHHHHHHhhhhcchheEEEEECCE-EEEcCcccCCCCeEEEecCCChHHH---HHHH
Confidence 378888 8899999998 599999999999988999999999999 9999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy2360 118 RSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 118 hS~ahlLa~Av~~lfp~ 134 (136)
||++|||++|++++||+
T Consensus 77 hS~~hlL~~A~~~~~~~ 93 (639)
T PRK12444 77 HSAAHILAQAVKRLYGD 93 (639)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999986
No 3
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.70 E-value=6.2e-17 Score=142.78 Aligned_cols=88 Identities=22% Similarity=0.347 Sum_probs=83.6
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHH
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrh 118 (136)
++|++ ++|..++++. ++|+.|+|+.++....+.+++|+|||+ ++||+++++.||+|+|+++++++|+ ++|||
T Consensus 2 ~~i~~---~~g~~~~~~~-gtt~~dia~~~~~~~~~~~v~a~vng~-l~dL~~~l~~d~~Vefi~~~~~~g~---~~y~h 73 (638)
T PRK00413 2 IKITL---PDGSVREFEA-GVTVADVAASISPGLAKAAVAGKVNGE-LVDLSTPIEEDASLEIITAKDEEGL---EIIRH 73 (638)
T ss_pred cEEEe---CCCCEEEeCC-CCCHHHHHHHhhhhchhheEEEEECCE-EeeCCccccCCCceeeeeccchhhH---HHHhh
Confidence 57788 7899999999 599999999999988899999999999 9999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhcCC
Q psy2360 119 SCSIMLGSVLSNAFKD 134 (136)
Q Consensus 119 S~ahlLa~Av~~lfp~ 134 (136)
|++|||+.|++++||+
T Consensus 74 S~~hll~~A~~~~~~~ 89 (638)
T PRK00413 74 SAAHLLAQAVKRLYPD 89 (638)
T ss_pred hHHHHHHHHHHHHcCC
Confidence 9999999999999985
No 4
>KOG1637|consensus
Probab=99.68 E-value=7.6e-18 Score=143.93 Aligned_cols=82 Identities=39% Similarity=0.722 Sum_probs=79.7
Q ss_pred CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHH
Q psy2360 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGS 126 (136)
Q Consensus 47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~ 126 (136)
|||+.++..+|.|||++||.. |..++++++.++|||. +|||++|++.|| +|+++|+|++|. .+||||+||+|++
T Consensus 6 pdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~-~~Dl~rp~e~~~-lell~f~~~~~k---~vfwhssahvlg~ 79 (560)
T KOG1637|consen 6 PDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGV-LWDLDRPLEGDC-LELLKFDDDEGK---DVFWHSSAHVLGE 79 (560)
T ss_pred CCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCc-eeccCCcchhhH-HHHccCCCcccc---eeeeehhhhHhhH
Confidence 999999999999999999999 8899999999999999 999999999999 999999999999 9999999999999
Q ss_pred HHHHhcCC
Q psy2360 127 VLSNAFKD 134 (136)
Q Consensus 127 Av~~lfp~ 134 (136)
|+++.|+.
T Consensus 80 a~e~~~g~ 87 (560)
T KOG1637|consen 80 ALEQEYGA 87 (560)
T ss_pred HHHHhcCe
Confidence 99999974
No 5
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.42 E-value=7.2e-13 Score=84.87 Aligned_cols=60 Identities=27% Similarity=0.407 Sum_probs=55.0
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
|.|++ |||+.+++++| +|+.|+|+.+++++.+.+++|+|||+ ++||++||+++|.|+++|
T Consensus 1 I~v~l---pdG~~~~~~~g-~T~~d~A~~I~~~l~~~~~~A~Vng~-~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYL---PDGSIKELPEG-STVLDVAYSIHSSLAKRAVAAKVNGQ-LVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEE---TTSCEEEEETT-BBHHHHHHHHSHHHHHCEEEEEETTE-EEETTSBB-SSEEEEEEE
T ss_pred CEEEC---CCCCeeeCCCC-CCHHHHHHHHCHHHHhheeEEEEcCE-ECCCCCCcCCCCEEEEEC
Confidence 45566 99999999995 99999999999999999999999999 999999999999999986
No 6
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=99.07 E-value=6.7e-10 Score=68.12 Aligned_cols=60 Identities=37% Similarity=0.643 Sum_probs=53.8
Q ss_pred EEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 40 NVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 40 ~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
.+++ ++|..+.++. ++|+.++++.++....+.++++++||+ ++||++++.++++|+|+++
T Consensus 2 ~i~~---~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~v~~~vng~-~~dL~~~l~~~~~ie~i~~ 61 (61)
T cd01667 2 KITL---PDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGE-LVDLSRPLEEDCELEIITF 61 (61)
T ss_pred EEEc---CCCCEEEeCC-CCCHHHHHHHHHHHHHhheEEEEECCE-EecCCcCcCCCCEEEEEeC
Confidence 4556 7888889988 699999999998877789999999999 9999999999999999985
No 7
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.77 E-value=3.3e-08 Score=59.99 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=50.2
Q ss_pred CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
++|..+.+++ ++|+.++++.+.....+.++++.+||+ ++||++++.+++.|+|++
T Consensus 6 ~~~~~~~~~~-g~t~~~~~~~~~~~~~~~~~~~~vn~~-~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 6 PDGSAVELPK-GATAMDFALKIHTDLGKGFIGALVNGQ-LVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred CCCCEEEcCC-CCCHHHHHHHHHHHHHhheEEEEECCE-ECCCCcCcCCCCEEEEeC
Confidence 6788999988 599999999998877789999999999 999999999999999985
No 8
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.56 E-value=3.2e-07 Score=56.99 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=50.2
Q ss_pred CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
++|+.++++. ++|+.++++.++....+.++++.+||+ +.|+++++.+++.|++++
T Consensus 6 ~~g~~~~~~~-~~t~~~~~~~~~~~~~~~~va~~vng~-~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 6 PKGEIIELPA-GATVLDFAYAIHTEIGNRCVGAKVNGK-LVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CCCCEEEcCC-CCCHHHHHHHHChHhhhheEEEEECCE-ECCCCCCCCCCCEEEEEC
Confidence 7899999988 599999999988877789999999999 999999999999999875
No 9
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=8.7e-06 Score=72.52 Aligned_cols=46 Identities=17% Similarity=0.404 Sum_probs=36.9
Q ss_pred ceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcCC
Q psy2360 76 SVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 76 iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~ 134 (136)
++++.+||. +|+.. +.++..+.+|+ .++|||+|||||+||+++||+
T Consensus 2 ~~~~~~~~~--~~~~~--------~~~~~~~~~~~---~~~rhs~ah~l~~av~~l~p~ 47 (589)
T COG0441 2 ALAIHVDGE--LDLKD--------EIITAEDEEGL---EIIRHSCAHVLAQAVKRLYPD 47 (589)
T ss_pred ceEEEcccc--eeccc--------cccCccCccch---hhhhhHHHHHHHHHHHHhCCC
Confidence 678899994 66655 33444444999 999999999999999999997
No 10
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=97.45 E-value=0.0008 Score=61.19 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=56.7
Q ss_pred CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCc
Q psy2360 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPY 110 (136)
Q Consensus 47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~ 110 (136)
|.|..+..+.| .||.|+|-.+-.+.....++|+|||+ ++.|+++|+.+..||+||-.. .+-
T Consensus 394 PkG~vi~LP~G-atplDFAY~vHt~iG~~c~gAkVnG~-ivpl~~~Lk~Gd~VEIit~k~-~~P 454 (701)
T COG0317 394 PKGKVIDLPKG-ATPLDFAYAVHTDIGHRCIGAKVNGR-IVPLTTKLQTGDQVEIITSKH-AGP 454 (701)
T ss_pred CCCCEEeCCCC-CcchhhhhhhhchhcceeeEEEECCE-EeccceecCCCCEEEEEeCCC-CCC
Confidence 88999999995 99999999999999999999999999 999999999999999999887 444
No 11
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.44 E-value=0.0003 Score=63.99 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=55.5
Q ss_pred CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCC
Q psy2360 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDS 107 (136)
Q Consensus 47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~ 107 (136)
|+|..+..+.| .||.|+|-.+-.+.....++|+|||+ ++.|+++|+.+..||++|-+..
T Consensus 393 P~G~v~~LP~G-aT~lDFAY~iHt~iG~~c~gAkVNg~-~vpL~~~L~~Gd~VeIiT~~~~ 451 (702)
T PRK11092 393 PEGRIVELPAG-ATPVDFAYAVHTDIGHACVGARVDRQ-PYPLSQPLTSGQTVEIITAPGA 451 (702)
T ss_pred CCCCEEeCCCC-CchhhhhHhhCchhhceeEEEEECCE-ECCCCccCCCCCEEEEEeCCCC
Confidence 89999999994 99999999999999999999999999 9999999999999999997653
No 12
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.38 E-value=0.0009 Score=42.71 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=47.2
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 104 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~ 104 (136)
|+|++ +|+.+++++ ++|+.++++.... ...-+++.+||. +.. .+++++++..||++.+
T Consensus 1 m~i~v----NG~~~~~~~-~~tl~~lL~~l~~--~~~~vav~vNg~-iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 1 MNIQL----NGEPRELPD-GESVAALLAREGL--AGRRVAVEVNGE-IVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred CEEEE----CCeEEEcCC-CCCHHHHHHhcCC--CCCeEEEEECCe-EeCHHHcCcccCCCCCEEEEEEE
Confidence 46788 899999988 5999999988654 345566779998 776 8889999999999875
No 13
>PRK07440 hypothetical protein; Provisional
Probab=97.33 E-value=0.0011 Score=43.40 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=50.2
Q ss_pred ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360 38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 104 (136)
Q Consensus 38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~ 104 (136)
.|+|++ +|+.++++. ++|+.++++.+.. ....+++.+||+ +.. -.+++.++..||++++
T Consensus 4 ~m~i~v----NG~~~~~~~-~~tl~~lL~~l~~--~~~~vav~~N~~-iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 4 PITLQV----NGETRTCSS-GTSLPDLLQQLGF--NPRLVAVEYNGE-ILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred ceEEEE----CCEEEEcCC-CCCHHHHHHHcCC--CCCeEEEEECCE-EeCHHHcCceecCCCCEEEEEEE
Confidence 578888 899999988 5999999987654 457899999999 877 7788999999999986
No 14
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=97.23 E-value=0.0016 Score=42.47 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=47.8
Q ss_pred ceEEEeeeCCCCc----EEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 38 KINVTYKGLPEDA----ELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 38 ~i~i~~~~~~dg~----~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
.|+|++ +|+ .++++. ++|+.++++.+... ...++..+||+ +...++++.++.+|+++.+
T Consensus 4 mm~v~v----ng~~~~~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vNg~-iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKV----IGRGIEKEIEWRK-GMKVADILRAVGFN--TESAIAKVNGK-VALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEE----eccccceEEEcCC-CCcHHHHHHHcCCC--CccEEEEECCE-ECCCCcCcCCCCEEEEEcc
Confidence 467777 555 677777 59999999987543 46789999999 8778999999999999875
No 15
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=97.17 E-value=0.0014 Score=41.91 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=46.6
Q ss_pred EEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecc----cccCCCCceEEecc
Q psy2360 41 VTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHF 104 (136)
Q Consensus 41 i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~----~~l~~d~~Ie~i~~ 104 (136)
|++ +|+.++++. ++|+.++++.+... ...+++.+||+ +.+.. +++.++.+|+++.+
T Consensus 2 i~i----Ng~~~~~~~-~~tv~~ll~~l~~~--~~~i~V~vNg~-~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 2 ITV----NGEPREVEE-GATLAELLEELGLD--PRGVAVALNGE-IVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred EEE----CCeEEEcCC-CCCHHHHHHHcCCC--CCcEEEEECCE-EcCHHHcCceecCCCCEEEEEEe
Confidence 566 788999988 59999999987643 45667889999 98888 89999999999875
No 16
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=97.12 E-value=0.002 Score=41.76 Aligned_cols=59 Identities=8% Similarity=0.176 Sum_probs=47.5
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecc----cccCCCCceEEecc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHF 104 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~----~~l~~d~~Ie~i~~ 104 (136)
|+|++ +|+.++++.+.+|+.++++.+.. ....+++.+||+ +..-. +++.++..||++++
T Consensus 1 m~I~v----NG~~~~~~~~~~tv~~lL~~l~~--~~~~vav~vN~~-iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 1 MNLKI----NGNQIEVPESVKTVAELLTHLEL--DNKIVVVERNKD-ILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CEEEE----CCEEEEcCCCcccHHHHHHHcCC--CCCeEEEEECCE-EeCHHHcCceecCCCCEEEEEEE
Confidence 56788 88899987743689999987654 356889999999 77655 77999999999986
No 17
>PLN02837 threonine-tRNA ligase
Probab=97.09 E-value=0.00055 Score=61.26 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=33.9
Q ss_pred CCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcCC
Q psy2360 96 DCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 96 d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~ 134 (136)
...+++++.++++|+ .++|||++|||++|++++||+
T Consensus 29 ~~~~~~~~~~~~~~~---~~~~HSa~HLL~~Av~~l~~~ 64 (614)
T PLN02837 29 PERVVLPTNESSEKL---LKIRHTCAHVMAMAVQKLFPD 64 (614)
T ss_pred CceEEEEeccChhhH---HHHHHHHHHHHHHHHHHHcCC
Confidence 368999999999999 999999999999999999985
No 18
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=97.09 E-value=0.0019 Score=59.29 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=55.5
Q ss_pred CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCC
Q psy2360 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDS 107 (136)
Q Consensus 47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~ 107 (136)
|+|..+.++.| +|+.|+|..+.+......++|+|||+ .+.++++++.+..||++|-+..
T Consensus 411 PkG~~~~Lp~g-aT~lDfAy~iHt~iG~~~~gAkvng~-~v~l~~~L~~GD~VeIits~~~ 469 (743)
T PRK10872 411 PKGDVVDLPAG-STPLDFAYHIHSDVGHRCIGAKIGGR-IVPFTYQLQMGDQIEIITQKQP 469 (743)
T ss_pred CCCCeEEcCCC-CcHHHHHHHHhHHHHhhceEEEECCE-ECCCCcCCCCCCEEEEEeCCCC
Confidence 89999999994 99999999999999999999999999 9999999999999999997764
No 19
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=97.05 E-value=0.0035 Score=40.30 Aligned_cols=58 Identities=7% Similarity=0.165 Sum_probs=46.6
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 104 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~ 104 (136)
|+|++ +|+.++++. ++|+.++++.+... .+.+++.+|++ +.. -.+++.++..|+++.+
T Consensus 1 m~i~v----Ng~~~~~~~-~~tl~~ll~~l~~~--~~~vaVavN~~-iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF----NDQPMQCAA-GQTVHELLEQLNQL--QPGAALAINQQ-IIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE----CCeEEEcCC-CCCHHHHHHHcCCC--CCcEEEEECCE-EeChHHcCccccCCCCEEEEEEE
Confidence 56788 899999988 59999999886553 46689999999 754 3447899999999975
No 20
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=97.00 E-value=0.0038 Score=39.56 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=46.2
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec----ccccCCCCceEEecc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF 104 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~ 104 (136)
|+|++ +|+.++++. ++|+.++++.+... .-++..+||. +++- .++++++.+|+++.+
T Consensus 1 m~i~v----Ng~~~~~~~-~~tl~~ll~~l~~~---~~~~v~vN~~-~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 1 MDIQL----NQQTLSLPD-GATVADALAAYGAR---PPFAVAVNGD-FVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CEEEE----CCEEEECCC-CCcHHHHHHhhCCC---CCeEEEECCE-EcCchhcccccCCCCCEEEEEee
Confidence 46788 899999988 59999999887542 4468899999 8764 678999999999875
No 21
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=96.95 E-value=0.0041 Score=56.48 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=55.6
Q ss_pred CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCC
Q psy2360 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDS 107 (136)
Q Consensus 47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~ 107 (136)
|+|..+.++. ++|+.|+|..+.+......+.|+|||+ .+.|+++++++..||+++-+..
T Consensus 367 PkG~~~~lp~-gst~~DfAy~ih~~~g~~~~~a~vng~-~v~l~~~l~~gd~vei~t~~~~ 425 (683)
T TIGR00691 367 PKGDVVELPS-GSTPVDFAYAVHTDVGNKCTGAKVNGK-IVPLDKELENGDVVEIITGKNS 425 (683)
T ss_pred CCCeEEEcCC-CCCHHHHHHHHhHHhHhceeEEEECCE-ECCCCccCCCCCEEEEEeCCCC
Confidence 8999999999 499999999999999999999999999 9999999999999999997764
No 22
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.93 E-value=0.0046 Score=40.58 Aligned_cols=59 Identities=8% Similarity=0.174 Sum_probs=49.6
Q ss_pred ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360 38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 104 (136)
Q Consensus 38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~ 104 (136)
+|++.+ +|+..+.+.+ +|+.|+++++.-. ...+++.+||. +.. .+..++++..||++.+
T Consensus 2 ~m~i~~----ng~~~e~~~~-~tv~dLL~~l~~~--~~~vav~vNg~-iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 2 PMTIQL----NGKEVEIAEG-TTVADLLAQLGLN--PEGVAVAVNGE-IVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred cEEEEE----CCEEEEcCCC-CcHHHHHHHhCCC--CceEEEEECCE-EccchhhhhccccCCCEEEEEEe
Confidence 467777 7999999884 9999999987553 57899999999 888 8889999899999875
No 23
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.90 E-value=0.0046 Score=39.46 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=46.4
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec----ccccCCCCceEEecc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF 104 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~ 104 (136)
|+|++ +|+.++. . .+|+.++.+.+... ...+++.+|++ +..- ++++.++.+|+++.+
T Consensus 1 m~i~~----Ng~~~~~-~-~~tl~~Ll~~l~~~--~~~vavavN~~-iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 1 MKLFV----NGETLQT-E-ATTLALLLAELDYE--GNWLATAVNGE-LVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CEEEE----CCeEEEc-C-cCcHHHHHHHcCCC--CCeEEEEECCE-EcCHHHcCccccCCCCEEEEEEe
Confidence 56788 7888888 4 37999999887543 46788999999 8876 779999999999975
No 24
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=96.71 E-value=0.0096 Score=40.53 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=48.9
Q ss_pred CcCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360 35 RIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 104 (136)
Q Consensus 35 ~~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~ 104 (136)
+|..|+|++ +|+.++++. ++|+.++++.+. +....+++.+||. +.. -.+.+.++..||++++
T Consensus 15 ~~~~m~I~V----NG~~~~~~~-~~tl~~LL~~l~--~~~~~vAVevNg~-iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 15 AMVLITISI----NDQSIQVDI-SSSLAQIIAQLS--LPELGCVFAINNQ-VVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CCceEEEEE----CCeEEEcCC-CCcHHHHHHHcC--CCCceEEEEECCE-EeCHHHcCcccCCCCCEEEEEEE
Confidence 445788888 899999988 599999998864 4467788899998 654 3445788899999876
No 25
>PRK06437 hypothetical protein; Provisional
Probab=96.58 E-value=0.011 Score=38.30 Aligned_cols=51 Identities=6% Similarity=0.124 Sum_probs=41.8
Q ss_pred cEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 50 AELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 50 ~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
+.++++. ++|+.++++.+... ..-+++.+||. +.+..++++++.+|+++.+
T Consensus 13 ~~~~i~~-~~tv~dLL~~Lgi~--~~~vaV~vNg~-iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 13 KTIEIDH-ELTVNDIIKDLGLD--EEEYVVIVNGS-PVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred eEEEcCC-CCcHHHHHHHcCCC--CccEEEEECCE-ECCCceEcCCCCEEEEEec
Confidence 5677777 59999999987553 34557779999 9999999999999999976
No 26
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=96.19 E-value=0.016 Score=37.12 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=45.2
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeee---eecccccCCCCceEEecc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKL---WDMHRPLESDCELQLLHF 104 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l---~DL~~~l~~d~~Ie~i~~ 104 (136)
|+|++ +|+.+.+++ ++|+.++++.+.- ...-++..+||. + .+..+.+.++..||++.+
T Consensus 1 m~i~v----NG~~~~~~~-~~tl~~ll~~l~~--~~~~vav~~N~~-iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 1 MIVVV----NEEQVEVDE-QTTVAALLDSLGF--PEKGIAVAVDWS-VLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred CEEEE----CCEEEEcCC-CCcHHHHHHHcCC--CCCcEEEEECCc-CcChhHhhhhcCCCCEEEEEee
Confidence 56788 899999988 5999999988654 456788888986 3 234456999999999875
No 27
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=96.12 E-value=0.022 Score=36.19 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=42.8
Q ss_pred CCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360 48 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 104 (136)
Q Consensus 48 dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~ 104 (136)
+|+.++++. ++|+.++++.+... ...++..+||+ +.. -.+++.++.+|+++.+
T Consensus 4 Ng~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vN~~-iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVED-GLTLAALLESLGLD--PRRVAVAVNGE-IVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCC-CCcHHHHHHHcCCC--CCeEEEEECCE-EcCHHHcCceecCCCCEEEEEEe
Confidence 788999988 59999999987644 46788899999 753 3357899999999875
No 28
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=95.27 E-value=0.056 Score=45.35 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=48.1
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 104 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~ 104 (136)
|+|++ +|+.++++. ++|+.++++.+... ...++..+||+ +.+ -+++++++..||++.+
T Consensus 1 M~I~V----NGk~~el~e-~~TL~dLL~~L~i~--~~~VAVeVNge-IVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 1 MRIRL----NGEPRQVPA-GLTIAALLAELGLA--PKKVAVERNLE-IVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CEEEE----CCEEEecCC-CCcHHHHHHHcCCC--CCeEEEEECCE-ECCHHHcCccccCCCCEEEEEEE
Confidence 46788 899999988 49999999987553 45677779999 887 6679999999999987
No 29
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.99 E-value=0.087 Score=34.15 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=41.6
Q ss_pred EEEeecCCCCHHHHHHhhchhh------hccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEML------CDRSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~------~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
.++++. ++|+.++.+.+...+ ....+++.+||+ .++.+++++++.+|.++..
T Consensus 19 ~~~~~~-~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~-~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 19 ELELPE-GATVGELLDALEARYPGLLEELLARVRIAVNGE-YVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred EEECCC-CCcHHHHHHHHHHHCchHHHhhhhcEEEEECCe-EcCCCcccCCCCEEEEeCC
Confidence 345555 489999999886543 246889999999 9999999999999999864
No 30
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=94.62 E-value=0.14 Score=32.86 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=42.9
Q ss_pred EEEeecCCCCHHHHHHhhchhhhc----cceEEEEcCeeeeec---ccccCCCCceEEecc
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEMLCD----RSVLALIDGVKLWDM---HRPLESDCELQLLHF 104 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~~~----~iv~a~vng~~l~DL---~~~l~~d~~Ie~i~~ 104 (136)
....+. ++|+.++.+.+...++. ..++..+||+ +.+. ++++.++++|.++..
T Consensus 15 ~~~~~~-~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~-~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 15 EIEVPE-GSTVRDLLEALAERYPELALRDRVAVAVNGE-IVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEESS-TSBHHHHHHHHCHHTGGGHTTTTEEEEETTE-EEGGGTTTSBEETTEEEEEEES
T ss_pred EEecCC-CCcHHHHHHHHHhhccccccCccEEEEECCE-EcCCccCCcCcCCCCEEEEECC
Confidence 344555 59999999999887642 7899999999 8888 999999999999864
No 31
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=94.55 E-value=0.12 Score=34.06 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCcEEEeecCCCCHHHHHHhhchhh---hc--cceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 48 EDAELIMNKNLSTPYNCAQHMSEML---CD--RSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 48 dg~~~~~~~~~tt~~dia~~i~~~~---~~--~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
+...++++. ++|+.++.+.+...+ .. ..++..+||+ +.+.+++++++.+|.++..
T Consensus 19 ~~~~~~~~~-~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~-~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 19 SDMTLELPA-GSTTADCLAELVAKFPSLEEVRSCCVLALNEE-YTTESAALKDGDELAIIPP 78 (82)
T ss_pred CeEEEECCC-CCcHHHHHHHHHHHChhHHHHhhCcEEEECCE-EcCCCcCcCCCCEEEEeCC
Confidence 445566666 589999988875433 22 4567889999 8899999999999999864
No 32
>PRK01777 hypothetical protein; Validated
Probab=94.36 E-value=0.25 Score=34.31 Aligned_cols=73 Identities=16% Similarity=0.074 Sum_probs=48.3
Q ss_pred cCceEEEeee-CCCCc---EEEeecCCCCHHHHHHhhchhhhc-cc----eEEEEcCeeeeecccccCCCCceEEeccCC
Q psy2360 36 IEKINVTYKG-LPEDA---ELIMNKNLSTPYNCAQHMSEMLCD-RS----VLALIDGVKLWDMHRPLESDCELQLLHFYD 106 (136)
Q Consensus 36 ~~~i~i~~~~-~~dg~---~~~~~~~~tt~~dia~~i~~~~~~-~i----v~a~vng~~l~DL~~~l~~d~~Ie~i~~~s 106 (136)
|+.|+|++.. .++.. .++++. ++|..|+++........ .+ ...-|||+ ..+++++|+++..||++--=.
T Consensus 1 ~~~i~v~V~ya~~~~~~~~~l~vp~-GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk-~v~~d~~L~dGDRVeIyrPL~ 78 (95)
T PRK01777 1 MGKIRVEVVYALPERQYLQRLTLQE-GATVEEAIRASGLLELRTDIDLAKNKVGIYSR-PAKLTDVLRDGDRVEIYRPLL 78 (95)
T ss_pred CCeeEEEEEEECCCceEEEEEEcCC-CCcHHHHHHHcCCCccCcccccccceEEEeCe-ECCCCCcCCCCCEEEEecCCC
Confidence 4556666532 23322 466777 59999999886432211 12 35668999 999999999999999976544
Q ss_pred CCCc
Q psy2360 107 SDPY 110 (136)
Q Consensus 107 ~~g~ 110 (136)
-|-.
T Consensus 79 ~DPk 82 (95)
T PRK01777 79 ADPK 82 (95)
T ss_pred CCHH
Confidence 4443
No 33
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=93.55 E-value=0.4 Score=30.48 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=43.7
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
|+|.+ +|+.+.... .+|+.++.+.+.+. .-...+||. ...=+.+|+++.+|-||.
T Consensus 1 M~I~v----N~k~~~~~~-~~tl~~lr~~~k~~----~DI~I~NGF-~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKV----NEKEIETEE-NTTLFELRKESKPD----ADIVILNGF-PTKEDIELKEGDEVFLIK 55 (57)
T ss_pred CEEEE----CCEEEEcCC-CcCHHHHHHhhCCC----CCEEEEcCc-ccCCccccCCCCEEEEEe
Confidence 46788 889999988 49999998887764 335589999 887888888888887764
No 34
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=92.85 E-value=0.38 Score=31.99 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=42.0
Q ss_pred EEEeecCCCCHHHHHHhhchhhhccceEEEE-------cCeeeeecccccCCCCceEEec
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEMLCDRSVLALI-------DGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~~~~iv~a~v-------ng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
.+.++. ++|..|++..+..+..+....|.+ +|+ ...++++|+++.-|++++
T Consensus 18 ~liL~~-GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq-~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 18 PVILRR-GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQ-RVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CEEECC-CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCe-ECCCCCEecCCCEEEEeC
Confidence 577778 599999999988777677666664 888 899999999999888864
No 35
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=91.99 E-value=0.51 Score=31.38 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=40.1
Q ss_pred EEEeecCCCCHHHHHHhhchhhhccce---EEEEcCeeeeecccccCCCCceEEec
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEMLCDRSV---LALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~~~~iv---~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
...+++ ++|..|+|..+..+..+... .++ ||+ ...++++++++..|++++
T Consensus 24 ~~~l~~-GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~-~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 24 AFLLPK-GSTARDLAYAIHTDIGDGFLHAIDAR-TGR-RVGEDYELKHRDVIKIVS 76 (76)
T ss_pred eEEECC-CCCHHHHHHHHHHHHHhcceeeEEee-CCE-EeCCCcEecCCCEEEEeC
Confidence 356667 59999999998877766633 345 999 999999999999998875
No 36
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=91.79 E-value=0.72 Score=30.22 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=38.8
Q ss_pred EEEeecCCCCHHHHHHhhchhhh-----ccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEMLC-----DRSVLALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~~-----~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
+++++.+++|..++...+...++ ...+...+|++ ..+.+.+++++.+|.++-
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~-~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEE-YVTDDALLNEGDEVAFIP 75 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCE-EcCCCcCcCCCCEEEEeC
Confidence 34444434888888888765543 14567889999 888999999999998875
No 37
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=86.18 E-value=0.65 Score=41.96 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q psy2360 114 RTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~lfp~ 134 (136)
.+-+||++|||.+|++++||+
T Consensus 453 ~~r~HTAtHLL~~ALr~vlG~ 473 (594)
T PRK01584 453 TTKLHTATHLLHKALRLVLGD 473 (594)
T ss_pred HHHHHHHHHHHHHHHHHHcCc
Confidence 789999999999999999985
No 38
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=85.44 E-value=4.6 Score=26.54 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=33.8
Q ss_pred CCCHHHHHHhhchhhh-------ccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360 58 LSTPYNCAQHMSEMLC-------DRSVLALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 58 ~tt~~dia~~i~~~~~-------~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
++|..++.+.+...++ ...+..-||++ +.++++++.++.+|-|+-
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~-~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQT-LVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCE-EcCCCCCCCCCCEEEEeC
Confidence 4788888777654432 23356788999 989999999999998874
No 39
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=84.14 E-value=5.5 Score=26.24 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=33.9
Q ss_pred CCCHHHHHHhhchhhhc-------------cceEEEEcCeeeeeccc--ccCCCCceEEec
Q psy2360 58 LSTPYNCAQHMSEMLCD-------------RSVLALIDGVKLWDMHR--PLESDCELQLLH 103 (136)
Q Consensus 58 ~tt~~dia~~i~~~~~~-------------~iv~a~vng~~l~DL~~--~l~~d~~Ie~i~ 103 (136)
++|..++++.+...++. +.+...+||+ ..+-.. +++++.+|.|+.
T Consensus 24 ~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~-~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 24 GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGR-NVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCE-ecCccCCCCCCCCCEEEEeC
Confidence 48999999988655432 2377889999 766555 999999988875
No 40
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=77.26 E-value=7.6 Score=26.08 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=39.7
Q ss_pred EEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 52 LIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 52 ~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
+.+.. .+|+.++++.+.--. ..+-+..+||+ -.|+++.+.++..|.+.-.
T Consensus 27 ~~~~~-~~tvkd~IEsLGVP~-tEV~~i~vNG~-~v~~~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 27 HPFDG-GATVKDVIESLGVPH-TEVGLILVNGR-PVDFDYRLKDGDRVAVYPV 76 (81)
T ss_pred EecCC-CCcHHHHHHHcCCCh-HHeEEEEECCE-ECCCcccCCCCCEEEEEec
Confidence 34444 599999999986643 45778889999 9999999999988877643
No 41
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=75.98 E-value=13 Score=24.55 Aligned_cols=51 Identities=16% Similarity=0.002 Sum_probs=40.6
Q ss_pred EEEeecCCCCHHHHHHhhchhhhccceEEEEcC-eeeeecccccCCCCceEEec
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDG-VKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng-~~l~DL~~~l~~d~~Ie~i~ 103 (136)
...+.+ ++|..++|..+-....+...-|.+-| + ...+++.++++.-|+|++
T Consensus 25 ~~~l~~-g~tv~d~a~~IH~d~~~~F~~A~v~~~~-~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 25 CVLVKK-GTTVGDVARKIHGDLEKGFIEAVGGRRR-LEGKDVILGKNDILKFKT 76 (76)
T ss_pred eEEEcC-CCCHHHHHHHHhHHHHhccEEEEEccCE-EECCCEEecCCCEEEEEC
Confidence 456667 59999999999888888888888877 6 788899988877777653
No 42
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=69.73 E-value=18 Score=30.20 Aligned_cols=77 Identities=6% Similarity=-0.070 Sum_probs=47.4
Q ss_pred ceEEEeeeCCCCcEEEe-ecCCCCHHHHHHhhchhhh-------------ccceEEEEcCe--eeeecccccCCCCceEE
Q psy2360 38 KINVTYKGLPEDAELIM-NKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGV--KLWDMHRPLESDCELQL 101 (136)
Q Consensus 38 ~i~i~~~~~~dg~~~~~-~~~~tt~~dia~~i~~~~~-------------~~iv~a~vng~--~l~DL~~~l~~d~~Ie~ 101 (136)
+++|+| ||+.+++ ++ ++|+.++|++.....+ =++.++.|+|. ...-=.+|+.++-.|.
T Consensus 68 ~~~I~I----DGk~VeV~~~-G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~- 141 (297)
T PTZ00305 68 RAIMFV----NKRPVEIIPQ-EENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII- 141 (297)
T ss_pred ceEEEE----CCEEEEecCC-CChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE-
Confidence 578888 9999999 78 4999999988644321 14577888875 0122345556555433
Q ss_pred eccCCCCCcchhhHHHHHHHHHHH
Q psy2360 102 LHFYDSDPYHSNRTFWRSCSIMLG 125 (136)
Q Consensus 102 i~~~s~~g~~~~~vyrhS~ahlLa 125 (136)
.+++.-. ++=+..+.+||+
T Consensus 142 --T~Se~v~---~~Rk~vLElLLs 160 (297)
T PTZ00305 142 --TDSRLVR---DAREGNVELILI 160 (297)
T ss_pred --eCCHHHH---HHHHHHHHHHHh
Confidence 3444443 444444555554
No 43
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=64.67 E-value=4.9 Score=37.83 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q psy2360 114 RTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~lfp~ 134 (136)
.+-+||++|||.+|++++|+.
T Consensus 549 ~m~~HTa~HLL~~al~~~lg~ 569 (865)
T PRK00252 549 IARNHSATHLLHAALREVLGE 569 (865)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 588999999999999999874
No 44
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=62.84 E-value=16 Score=28.71 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=45.8
Q ss_pred cCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhc-------------cceEEEEcCeee---eecccccCCCCce
Q psy2360 36 IEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCD-------------RSVLALIDGVKL---WDMHRPLESDCEL 99 (136)
Q Consensus 36 ~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~-------------~iv~a~vng~~l---~DL~~~l~~d~~I 99 (136)
|..++|++ ||+.+.+++| .|+.+.+.......+. ....+.|||. . .-=.+++.++-.|
T Consensus 1 m~~v~i~i----dg~~~~~~~g-~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~-~~~~~aC~t~v~~Gm~v 74 (234)
T PRK07569 1 MSVKTLTI----DDQLVSAREG-ETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGS-NKLLPACVTPVAEGMVV 74 (234)
T ss_pred CceEEEEE----CCEEEEeCCC-CHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCC-CccccCcCCCCCCCCEE
Confidence 56788888 9999999994 9999998874432221 3467788885 2 1234455555432
Q ss_pred EEeccCCCCCcchhhHHHHHHHHHH
Q psy2360 100 QLLHFYDSDPYHSNRTFWRSCSIML 124 (136)
Q Consensus 100 e~i~~~s~~g~~~~~vyrhS~ahlL 124 (136)
+ .+++ .. .-+|+....+|
T Consensus 75 ~---t~~~-~~---~~~rk~~l~~l 92 (234)
T PRK07569 75 Q---TNTP-RL---QEYRRMIVELL 92 (234)
T ss_pred E---ECCH-HH---HHHHHHHHHHH
Confidence 2 2233 33 45555554433
No 45
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=60.80 E-value=8.1 Score=36.39 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q psy2360 114 RTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~lfp~ 134 (136)
.+-+||++|||.+|++++|+.
T Consensus 556 ~m~~HTAtHLL~aAL~~vlg~ 576 (851)
T TIGR00344 556 IMRNHSATHLLHAALQKVLGN 576 (851)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999864
No 46
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=59.52 E-value=15 Score=24.31 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=22.0
Q ss_pred ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhch
Q psy2360 38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70 (136)
Q Consensus 38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~ 70 (136)
.|+|++ ||+.+++.+| .|+.+.+.....
T Consensus 3 ~v~i~i----dG~~v~~~~G-~til~al~~~gi 30 (82)
T PF13510_consen 3 MVTITI----DGKPVEVPPG-ETILEALLAAGI 30 (82)
T ss_dssp EEEEEE----TTEEEEEEET--BHHHHHHHTT-
T ss_pred EEEEEE----CCEEEEEcCC-CHHHHHHHHCCC
Confidence 578888 9999999994 999998887543
No 47
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=57.56 E-value=19 Score=23.91 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=30.3
Q ss_pred CCHHHHHHhhchhh-------h-ccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360 59 STPYNCAQHMSEML-------C-DRSVLALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 59 tt~~dia~~i~~~~-------~-~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
.|+.++.+.+.... . +.++.+.+|.. +.++++++.++++|-|+.
T Consensus 28 ~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~t~L~dGDeVa~~P 79 (84)
T COG1977 28 ATVGELEELLPKEGERWLLALEDNIVVNAANNEF-LVGLDTPLKDGDEVAFFP 79 (84)
T ss_pred HHHHHHHHHHHhhhhhHHhccCccceEEeeecee-eccccccCCCCCEEEEeC
Confidence 56666665553322 1 24466666677 999999999999998875
No 48
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=49.19 E-value=43 Score=31.08 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=48.7
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhh-------------hccceEEEEcC--eeeeecccccCCCCceEEec
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML-------------CDRSVLALIDG--VKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~-------------~~~iv~a~vng--~~l~DL~~~l~~d~~Ie~i~ 103 (136)
++|++ ||++++++++ .|+.+.+....... +=+.+++.++| +.+..=..|..++- + |.
T Consensus 2 ~tI~I----DG~ei~v~~g-~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM-~--I~ 73 (693)
T COG1034 2 VTITI----DGKEIEVPEG-ETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGM-V--IS 73 (693)
T ss_pred eEEEE----CCEEEecCCC-cHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCe-E--Ee
Confidence 67888 9999999995 89999998854322 22567888888 41333344665544 3 77
Q ss_pred cCCCCCcchhhHHHHH-HHHHH
Q psy2360 104 FYDSDPYHSNRTFWRS-CSIML 124 (136)
Q Consensus 104 ~~s~~g~~~~~vyrhS-~ahlL 124 (136)
.+|++.+ -+|++ ..+||
T Consensus 74 T~s~~vk----~~R~~vmE~LL 91 (693)
T COG1034 74 TNSEEVK----KAREGVMEFLL 91 (693)
T ss_pred cCCHHHH----HHHHHHHHHHH
Confidence 7777776 44554 34444
No 49
>PLN02900 alanyl-tRNA synthetase
Probab=47.70 E-value=18 Score=34.60 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q psy2360 114 RTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~lfp~ 134 (136)
.+-+||+.|||.+|++++|+.
T Consensus 594 ~m~~HTAtHLL~aALr~vlG~ 614 (936)
T PLN02900 594 IAPNHTATHLLNSALKEVLGD 614 (936)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 578999999999999999875
No 50
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=45.28 E-value=61 Score=29.75 Aligned_cols=76 Identities=9% Similarity=0.041 Sum_probs=45.5
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhh-------------ccceEEEEcCe---eeeecccccCCCCceEEe
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGV---KLWDMHRPLESDCELQLL 102 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~-------------~~iv~a~vng~---~l~DL~~~l~~d~~Ie~i 102 (136)
+++++ ||+.+++++| +|+.+.++......+ =+++++.|+|. ...-=.+|+.++-. |
T Consensus 2 ~~~~I----dg~~v~v~~g-~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~---v 73 (687)
T PRK09130 2 VKLKV----DGKEIEVPDG-YTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMV---I 73 (687)
T ss_pred eEEEE----CCEEEEeCCC-CHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCE---E
Confidence 67888 9999999994 999999988544321 14577777663 11123344444443 2
Q ss_pred ccCCCCCcchhhHHHHHHHHHHH
Q psy2360 103 HFYDSDPYHSNRTFWRSCSIMLG 125 (136)
Q Consensus 103 ~~~s~~g~~~~~vyrhS~ahlLa 125 (136)
..+++... ++=+-.+.+||+
T Consensus 74 ~T~s~~v~---~~r~~~le~ll~ 93 (687)
T PRK09130 74 FTNTPMVK---KAREGVMEFLLI 93 (687)
T ss_pred EeCCHHHH---HHHHHHHHHHHh
Confidence 23445444 454555556665
No 51
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=44.88 E-value=23 Score=28.21 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=21.0
Q ss_pred CCcccccc------------cCChHHHHHHHHHHHHHHHH
Q psy2360 1 MPCELGNR------------QISSNIVQKQNDIFNKEFKR 28 (136)
Q Consensus 1 ~~~~~~~~------------~~~~~~~~~r~~lf~~~~~~ 28 (136)
.||.+|+. -..+.|+.+|..||+++==.
T Consensus 10 ~~~~ggf~~~~~~~~~~~a~l~~p~rLe~R~~lFe~~~Lp 49 (234)
T PF11316_consen 10 YPAPGGFQVEHSDLEERRAYLYAPERLEERFALFETYCLP 49 (234)
T ss_pred cccCCCcccccCCHhHHHHhhcCHHHHHHHHHHHHHHHhh
Confidence 47888876 23558999999999987543
No 52
>PLN02961 alanine-tRNA ligase
Probab=44.32 E-value=14 Score=28.97 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHh-cC
Q psy2360 114 RTFWRSCSIMLGSVLSNA-FK 133 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~l-fp 133 (136)
.+-.||+.|||.+|++++ ++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~ 102 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLG 102 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCC
Confidence 466799999999999986 54
No 53
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=43.97 E-value=19 Score=34.19 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q psy2360 114 RTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~lfp~ 134 (136)
.+-+||+.|||.+|++++|+.
T Consensus 589 ~mr~HTAtHLL~~al~~vlG~ 609 (900)
T PRK13902 589 LMRHHTATHIILAAARKVLGD 609 (900)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 566799999999999999873
No 54
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=42.33 E-value=25 Score=33.51 Aligned_cols=22 Identities=5% Similarity=-0.037 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCC
Q psy2360 113 NRTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 113 ~~vyrhS~ahlLa~Av~~lfp~ 134 (136)
..+-.||+.|||.+|++++|+.
T Consensus 592 ~~m~~HTAtHLL~~alr~vlG~ 613 (902)
T TIGR03683 592 RLMRHHTATHVLLAAARRVLGR 613 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999874
No 55
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=37.91 E-value=43 Score=22.32 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=19.1
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHhcCC
Q psy2360 104 FYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 104 ~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~ 134 (136)
..+.+++ .|||+...--|..|++..||-
T Consensus 27 ~~~~~rl---~iYr~~~~~~l~~~L~~~fP~ 54 (94)
T PF09836_consen 27 LSPARRL---AIYRNNYRARLIEALEATFPV 54 (94)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTTT
T ss_pred CChHHHH---HHHHHHHHHHHHHHHHHHhHH
Confidence 5567889 999999999999999999994
No 56
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=36.35 E-value=1.6e+02 Score=27.93 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=36.1
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhh-------------ccceEEEEcCeeeeecccccCCCC
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGVKLWDMHRPLESDC 97 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~-------------~~iv~a~vng~~l~DL~~~l~~d~ 97 (136)
|++++ ||+.+++++ +.|+.+++.......+ =+.+++.|||+...-=.+|+.++.
T Consensus 2 v~i~I----dG~~v~~~~-G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM 68 (819)
T PRK08493 2 ITITI----NGKECEAQE-GEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGM 68 (819)
T ss_pred eEEEE----CCEEEEeCC-CCHHHHHHHHcCCccccccccCCCCCCccccceEEEECCEEeccccCCCCCCC
Confidence 67888 999999998 4999999988543221 134788889972222334444444
No 57
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.88 E-value=24 Score=25.26 Aligned_cols=21 Identities=5% Similarity=0.210 Sum_probs=17.7
Q ss_pred cccccccCChHHHHHHHHHHH
Q psy2360 3 CELGNRQISSNIVQKQNDIFN 23 (136)
Q Consensus 3 ~~~~~~~~~~~~~~~r~~lf~ 23 (136)
+.+.||.++|+||.+|.+-+.
T Consensus 43 LSLkYH~L~peYi~~Ri~~L~ 63 (112)
T TIGR00597 43 LSLRYHNLHPDYIHRRLQSLG 63 (112)
T ss_pred EEhhhhccCHHHHHHHHHHhc
Confidence 357899999999999997665
No 58
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=34.25 E-value=59 Score=24.17 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=36.0
Q ss_pred cCeeeeecccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcCCC
Q psy2360 82 DGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDT 135 (136)
Q Consensus 82 ng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~~ 135 (136)
.|. +.||..+.+...+|-||+.-+++=. .-+.-++++|++.||..
T Consensus 46 ~~~-~v~l~~~~~n~~~vvfVSa~S~~h~--------~~~~~~i~si~~~~P~~ 90 (142)
T PF07801_consen 46 PGP-FVDLSSSSKNSSDVVFVSATSDNHF--------NESMKSISSIRKFYPNH 90 (142)
T ss_pred CCc-ceecccccccCCccEEEEEecchHH--------HHHHHHHHHHHHHCCCC
Confidence 467 8999999998899999998887655 34466788899999964
No 59
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=34.20 E-value=2.3e+02 Score=25.62 Aligned_cols=60 Identities=10% Similarity=0.101 Sum_probs=39.3
Q ss_pred cCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhh---hc----------cceEEEEcCeee---eecccccCCCCce
Q psy2360 36 IEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML---CD----------RSVLALIDGVKL---WDMHRPLESDCEL 99 (136)
Q Consensus 36 ~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~---~~----------~iv~a~vng~~l---~DL~~~l~~d~~I 99 (136)
|..++|++ ||+.+++++ +.|+.+++....... .. ..+++.|||. - .-=.+|+.++-.|
T Consensus 1 ~~~v~~~i----dg~~~~~~~-g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~g~-~~~~~aC~t~~~~Gm~v 74 (652)
T PRK12814 1 MNTISLTI----NGRSVTAAP-GTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIKGK-NRFVPACSTAVSEGMVI 74 (652)
T ss_pred CCeEEEEE----CCEEEEeCC-cCcHHHHHHHcCCccccccCCCCCCCccccceeEEEECCC-cceecCcCCCCCCCCEE
Confidence 55688899 999999998 499999988743221 11 3577788885 2 1223555665554
Q ss_pred EE
Q psy2360 100 QL 101 (136)
Q Consensus 100 e~ 101 (136)
+.
T Consensus 75 ~t 76 (652)
T PRK12814 75 ET 76 (652)
T ss_pred Ee
Confidence 43
No 60
>KOG0010|consensus
Probab=34.17 E-value=89 Score=27.91 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=41.0
Q ss_pred ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhh---hccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360 38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML---CDRSVLALIDGVKLWD----MHRPLESDCELQLLHF 104 (136)
Q Consensus 38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~---~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~ 104 (136)
.++|+|+++.|...+.+... .|+.++-+.|.... .+..++ +..|+.|+| ..+-+.++.+|.+|-.
T Consensus 15 ~irV~Vkt~~dk~~~~V~~~-ssV~qlKE~I~~~f~a~~dqlvL-IfaGrILKD~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVASD-SSVLQLKELIAQRFGAPPDQLVL-IYAGRILKDDDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred eeEEEEecCCcceeEecccc-hHHHHHHHHHHHhcCCChhHeee-eecCccccChhhHHHcCCCCCcEEEEEec
Confidence 47888888777666777774 78888776665532 233444 445554666 3445567777777653
No 61
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=33.66 E-value=28 Score=28.11 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHhcC
Q psy2360 114 RTFWRSCSIMLGSVLSNAFK 133 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~lfp 133 (136)
.+=.||+.|||..++...|+
T Consensus 95 ~mr~HTa~Hlls~~~~~~~~ 114 (241)
T COG2872 95 HMRMHTALHLLSAVLYKVYG 114 (241)
T ss_pred HHhhhHHHHHHHHHhhcccc
Confidence 46679999999999998886
No 62
>PF14452 Multi_ubiq: Multiubiquitin
Probab=32.92 E-value=1.3e+02 Score=18.99 Aligned_cols=32 Identities=6% Similarity=-0.149 Sum_probs=24.4
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCD 74 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~ 74 (136)
.++++ ||..+++....+|..+|.+--......
T Consensus 3 ~~i~v----n~~~~~~~~~~iTg~qi~~lA~~~~~~ 34 (72)
T PF14452_consen 3 FRIIV----NGRPYEWPDPTITGRQILALAGPDPPD 34 (72)
T ss_pred EEEEE----CCeEEEECCCCcCHHHHHHHhCCCCCc
Confidence 56778 899999988789999988775554444
No 63
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=32.81 E-value=1.1e+02 Score=25.66 Aligned_cols=54 Identities=9% Similarity=0.210 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCcCceEEEeeeCCCCcEEEeecCCCC--HHHHHHhhchhhhccceEEEE
Q psy2360 24 KEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLST--PYNCAQHMSEMLCDRSVLALI 81 (136)
Q Consensus 24 ~~~~~~~~~~~~~~~i~i~~~~~~dg~~~~~~~~~tt--~~dia~~i~~~~~~~iv~a~v 81 (136)
.|.++.+++ .+|..|.|++ |+|..+.+..|+.+ ...|++++.+.......+..|
T Consensus 132 ~L~~~~a~~-r~~~~ipV~~---p~G~~~~lspG~hn~L~kaIIEeFaprF~pg~~vLyv 187 (306)
T PF06616_consen 132 TLVRKYAKE-RQMDRIPVTL---PNGEEITLSPGPHNELIKAIIEEFAPRFAPGPEVLYV 187 (306)
T ss_dssp HHHHHHHHH-HHHTSEEEEE---ETTEEEEE-SSTTHHHHHHHHHTHHHHHSTT-EEEEE
T ss_pred HHHHHHHHH-hccccceEEc---CCCceEEECCCcchHHHHHHHHHHHHhhCCCceEEEE
Confidence 344444432 2667899999 99999999776554 334666677766554444455
No 64
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=29.53 E-value=1.4e+02 Score=20.24 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCCHHHHHHhhchhhh-------------ccceEEEEcCeeee----ecccccCCCCceEEec
Q psy2360 58 LSTPYNCAQHMSEMLC-------------DRSVLALIDGVKLW----DMHRPLESDCELQLLH 103 (136)
Q Consensus 58 ~tt~~dia~~i~~~~~-------------~~iv~a~vng~~l~----DL~~~l~~d~~Ie~i~ 103 (136)
+.|..++++.+...+. .+-+...|||. -| .+.++++++.+|.|+.
T Consensus 28 ~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~-di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 28 PVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDT-DWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred CCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCc-cccccCCcccCCCCcCEEEEEC
Confidence 4788888877654331 22578888998 54 4789999999988875
No 65
>PRK13033 formyl peptide receptor-like 1 inhibitory protein; Reviewed
Probab=28.48 E-value=89 Score=22.43 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=24.4
Q ss_pred CHHHHHHhhchhhhccceEEEEcC----eeeeecccccCCC
Q psy2360 60 TPYNCAQHMSEMLCDRSVLALIDG----VKLWDMHRPLESD 96 (136)
Q Consensus 60 t~~dia~~i~~~~~~~iv~a~vng----~~l~DL~~~l~~d 96 (136)
.++-|++.++..-.+.++.-..|| -+-.||.+|+++.
T Consensus 75 dly~i~kkl~~g~vk~avv~ikdgg~~~yytfdltrplee~ 115 (133)
T PRK13033 75 DLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEEN 115 (133)
T ss_pred hHHHHHHHhcCCCcceEEEEeecCCCCccEEEeccCchHHh
Confidence 355678888775444555544444 3568999999875
No 66
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=27.86 E-value=52 Score=25.49 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=7.0
Q ss_pred ecccccCCCCceEEecc
Q psy2360 88 DMHRPLESDCELQLLHF 104 (136)
Q Consensus 88 DL~~~l~~d~~Ie~i~~ 104 (136)
||-+.+.-+.+++|++.
T Consensus 52 dL~r~i~~~~e~dFm~v 68 (178)
T COG0634 52 DLIRAIDFPLEVDFMHV 68 (178)
T ss_pred HHHHhcCCCceeEEEEE
Confidence 33333334444444443
No 67
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=27.49 E-value=97 Score=22.22 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=23.0
Q ss_pred ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhch
Q psy2360 38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70 (136)
Q Consensus 38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~ 70 (136)
.++|.. +||...++.. ++|..+|+.++..
T Consensus 17 ~vkvv~---~~G~v~~~~~-pv~a~evm~~~P~ 45 (181)
T PF14009_consen 17 TVKVVH---PDGKVEEFKR-PVTAAEVMLENPG 45 (181)
T ss_pred eEEEEc---CCCcEEEeCC-CcCHHHHHHHCCC
Confidence 455555 8999999977 7999999988644
No 68
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=27.13 E-value=1e+02 Score=28.34 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=30.8
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhc-------------cceEEEEcCe
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCD-------------RSVLALIDGV 84 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~-------------~iv~a~vng~ 84 (136)
|++++ ||+.+++++ ++|+.+++.......+. +.+++.|+|.
T Consensus 2 ~~~~i----dg~~~~~~~-g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~~~ 55 (776)
T PRK09129 2 VEIEI----DGKKVEVPE-GSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEKA 55 (776)
T ss_pred eEEEE----CCEEEEeCC-CCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEECCC
Confidence 67888 999999999 49999999885433211 4577778775
No 69
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=26.87 E-value=1.1e+02 Score=28.57 Aligned_cols=42 Identities=21% Similarity=0.409 Sum_probs=31.1
Q ss_pred ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchh---hhc----------cceEEEEcCe
Q psy2360 38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEM---LCD----------RSVLALIDGV 84 (136)
Q Consensus 38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~---~~~----------~iv~a~vng~ 84 (136)
.|++++ ||+.+++++| +|+.+.++..... +.. +.+++.|+|.
T Consensus 4 ~v~~~i----dg~~~~~~~g-~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~ 58 (797)
T PRK07860 4 LVTLTI----DGVEVSVPKG-TLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQ 58 (797)
T ss_pred eEEEEE----CCEEEEeCCC-ChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCC
Confidence 478888 9999999994 9999998875332 211 4477788885
No 70
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=26.85 E-value=1.6e+02 Score=19.87 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=25.2
Q ss_pred EEEeecCCCCHHHHHHhh--chhhhc---cceEEEEcCeeeeecccccCCCCceEEec
Q psy2360 51 ELIMNKNLSTPYNCAQHM--SEMLCD---RSVLALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i--~~~~~~---~iv~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
.++++. ++|..+.++.- ...++. .....=|-|+ ...+++++.++..||+.-
T Consensus 17 ~l~vp~-GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk-~~~~d~~L~~GDRVEIYR 72 (84)
T PF03658_consen 17 TLEVPE-GTTVAQAIEASGILEQFPEIDLEKNKVGIFGK-LVKLDTVLRDGDRVEIYR 72 (84)
T ss_dssp EEEEET-T-BHHHHHHHHTHHHH-TT--TTTSEEEEEE--S--TT-B--TT-EEEEE-
T ss_pred EEECCC-cCcHHHHHHHcCchhhCcccCcccceeeeeee-EcCCCCcCCCCCEEEEec
Confidence 366788 59999877652 211111 1222234567 888999999999999864
No 71
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=26.81 E-value=76 Score=21.25 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=29.5
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCC
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDC 97 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~ 97 (136)
+.+....+.+|+. | |++|+.||++.+.... ...++-+ -.+|..|+..=|
T Consensus 16 l~i~~k~g~~gkl--f--GSVt~~dIa~~l~~~~-----g~~Idk~-~I~l~~~IK~~G 64 (87)
T PF03948_consen 16 LTIKRKAGENGKL--F--GSVTSKDIAKALKEQT-----GIEIDKK-KIELPEPIKSLG 64 (87)
T ss_dssp EEEEECBSSCSSB--S--SEBSHHHHHHHHHHCC-----SSSSSSS-SBCSSSTBESSE
T ss_pred EEEEEEecCCcce--e--cCcCHHHHHHHHHHhh-----CCeEecc-EEECCCchhccE
Confidence 4444455556643 3 3589999999987642 2235555 566666665443
No 72
>PRK00969 hypothetical protein; Provisional
Probab=25.06 E-value=1.2e+02 Score=27.14 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=33.0
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCe
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGV 84 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~ 84 (136)
|.|.+ ||+.+.++. +.|+.|+++.-...+.+....+.+-|.
T Consensus 2 m~V~v----ng~~~~v~~-g~Tl~Dal~~s~~~y~~g~~I~iikg~ 42 (508)
T PRK00969 2 MSVKV----NGEEVTVPE-GSTLKDALKASGAPYIEGTNIGIIKGT 42 (508)
T ss_pred eEEEE----CCEEeecCC-CCcHHHHHhhcCCCcCCCCEEEEEeCc
Confidence 67888 899999998 599999998655566677788888774
No 73
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=24.74 E-value=1.5e+02 Score=16.99 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=20.8
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchh
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEM 71 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~ 71 (136)
++|.+ ||+...+.-...|..+++++....
T Consensus 2 Vtv~~----dG~~~~v~T~a~tV~~~L~~~gI~ 30 (43)
T PF03990_consen 2 VTVTV----DGKEKTVYTTASTVGDALKELGIT 30 (43)
T ss_pred EEEEE----CCEEEEEEeCCCCHHHHHHhCCCC
Confidence 56676 888877755568899988875443
No 74
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=24.58 E-value=2.8e+02 Score=21.15 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCceEEEeeeCCCCcEEEeecCCCCHHHHHHhh
Q psy2360 16 QKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHM 68 (136)
Q Consensus 16 ~~r~~lf~~~~~~~~~~~~~~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i 68 (136)
.++..+|+.|.++-......-.+..+....+++| +|+||+...+...
T Consensus 10 ~~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~G------sGKTTl~~~L~~~ 56 (229)
T PRK09270 10 EEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPG------AGKSTLAEFLEAL 56 (229)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC------CCHHHHHHHHHHH
Confidence 3677888888887666554433333333334555 4568887755543
No 75
>KOG1680|consensus
Probab=23.52 E-value=73 Score=26.52 Aligned_cols=46 Identities=11% Similarity=0.103 Sum_probs=39.1
Q ss_pred eecccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcCCC
Q psy2360 87 WDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDT 135 (136)
Q Consensus 87 ~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~~ 135 (136)
.+......+|..|-+|+++-+..+ .++.+-.+.=|..|++++..++
T Consensus 35 ~~~~~~~~~d~~I~lItlNRP~~~---Nal~~~~m~eL~~A~~~~e~D~ 80 (290)
T KOG1680|consen 35 PIKIELVGEDNGIALITLNRPKAL---NALCRATMLELAEAFKDFESDD 80 (290)
T ss_pred cceeEEeecCCCeEEEEeCChHHh---ccccHHHHHHHHHHHHHhhccC
Confidence 344445578899999999999999 9999999999999999988663
No 76
>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function.
Probab=23.13 E-value=99 Score=23.55 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=26.5
Q ss_pred ccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCC
Q psy2360 92 PLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDTH 136 (136)
Q Consensus 92 ~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~~~ 136 (136)
|++.|-.+.-+...+++.- .-.|++||+||+++-..|+
T Consensus 64 ~pePd~~~~~~K~Y~ee~D-------~~vA~~mA~avk~~~~~dI 101 (160)
T PF06787_consen 64 PPEPDYVIKYIKAYNEEND-------LEVAKLMAKAVKNKLNCDI 101 (160)
T ss_pred CCCcchhhccceeeccccc-------HHHHHHHHHHHHHHhCCCe
Confidence 4555666666666666554 3579999999999877653
No 77
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=22.32 E-value=2.1e+02 Score=27.45 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=39.5
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhh-------------hccceEEEEcCeeee-ecccccCCCCc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML-------------CDRSVLALIDGVKLW-DMHRPLESDCE 98 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~-------------~~~iv~a~vng~~l~-DL~~~l~~d~~ 98 (136)
+++++ ||+.++++. ++|..+.+....... .=+.+++.+||+ +. .=.++++++..
T Consensus 6 i~vti----dg~~~~v~~-G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~-l~rsCsT~v~dGm~ 73 (978)
T COG3383 6 ITVTI----DGRSIEVEE-GTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGK-LVRSCSTPVEDGMV 73 (978)
T ss_pred EEEEE----CCeEEecCC-ChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCc-eeccccccccCCcE
Confidence 78888 999999999 599999988754332 225688899998 54 45566666554
No 78
>KOG1769|consensus
Probab=21.83 E-value=2e+02 Score=20.24 Aligned_cols=54 Identities=24% Similarity=0.408 Sum_probs=34.4
Q ss_pred CceEEEeeeCCCCcEEEe--ecCCCCHHHHHHhhchh--hhccceEEEEcCeeeeecccc
Q psy2360 37 EKINVTYKGLPEDAELIM--NKNLSTPYNCAQHMSEM--LCDRSVLALIDGVKLWDMHRP 92 (136)
Q Consensus 37 ~~i~i~~~~~~dg~~~~~--~~~~tt~~dia~~i~~~--~~~~iv~a~vng~~l~DL~~~ 92 (136)
..|++++.+ .|+.++.| .. .+++..+++.+... +.-+.+.-.+||+.+.+-++|
T Consensus 19 ~hi~LKV~g-qd~~~~~Fkikr-~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP 76 (99)
T KOG1769|consen 19 EHINLKVKG-QDGSVVVFKIKR-HTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTP 76 (99)
T ss_pred ceEEEEEec-CCCCEEEEEeec-CChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCCh
Confidence 346667654 66766544 44 47777888887653 344667778899845555554
No 79
>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification.; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.
Probab=21.33 E-value=1.2e+02 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=20.6
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHhcC
Q psy2360 104 FYDSDPYHSNRTFWRSCSIMLGSVLSNAFK 133 (136)
Q Consensus 104 ~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp 133 (136)
+.++-|+ -..-||+..+||+|+...+-
T Consensus 30 ~tSD~GW---GCmlRs~QMlLAqaL~~~~l 56 (278)
T PF03416_consen 30 LTSDCGW---GCMLRSGQMLLAQALLRHHL 56 (278)
T ss_dssp -SB-TTT----HHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCc---ccccchhHHHHHHHHHHHhh
Confidence 6677788 67889999999999988753
No 80
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=20.86 E-value=3.6e+02 Score=20.04 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=40.3
Q ss_pred CCcccccccCChHHHHHHHHHHHHHHHHHHHHhcCcCceEEEeeeCCCCcEEEeecCCCCHHHHHHh
Q psy2360 1 MPCELGNRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQH 67 (136)
Q Consensus 1 ~~~~~~~~~~~~~~~~~r~~lf~~~~~~~~~~~~~~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~ 67 (136)
.|+-|+...-...-+..--+|...+.+-....++.-+.|-|++ .+|+. +..| -+.++|+.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl---~~~~p--y~~W--~i~~lA~~ 142 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL---KDGQP--YDSW--NIEELAAE 142 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe---CCCCC--Cccc--cHHHHHHh
Confidence 3666644443444555666777888888888887878999999 67766 3566 34456654
Done!