Query psy2360
Match_columns 136
No_of_seqs 111 out of 1216
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 23:00:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tke_A Threonyl-tRNA synthetas 99.8 3.2E-21 1.1E-25 149.8 8.0 88 39-134 2-89 (224)
2 1qf6_A THRRS, threonyl-tRNA sy 99.8 2.7E-20 9.2E-25 163.7 7.0 88 39-134 2-89 (642)
3 1nyr_A Threonyl-tRNA synthetas 99.8 3.8E-20 1.3E-24 162.4 4.9 91 36-134 1-91 (645)
4 1wwt_A Threonyl-tRNA synthetas 99.8 2.5E-19 8.4E-24 120.8 3.2 78 37-121 10-87 (88)
5 2kmm_A Guanosine-3',5'-BIS(dip 99.3 3.7E-12 1.3E-16 82.1 7.9 65 39-108 3-67 (73)
6 3hvz_A Uncharacterized protein 99.2 1.1E-10 3.9E-15 77.6 7.9 67 37-108 6-72 (78)
7 1tyg_B YJBS; alpha beta barrel 97.3 0.00062 2.1E-08 45.6 5.9 63 35-104 17-83 (87)
8 1f0z_A THis protein; ubiquitin 97.1 0.0011 3.7E-08 41.6 5.5 58 39-104 1-62 (66)
9 1ryj_A Unknown; beta/alpha pro 97.1 0.0016 5.3E-08 41.4 6.1 59 38-104 4-66 (70)
10 2k5p_A THis protein, thiamine- 96.8 0.002 6.8E-08 42.1 5.2 60 39-105 1-66 (78)
11 2kl0_A Putative thiamin biosyn 96.8 0.0021 7.1E-08 41.5 5.1 58 39-105 1-62 (73)
12 2cu3_A Unknown function protei 96.8 0.0046 1.6E-07 38.4 6.5 55 41-104 2-60 (64)
13 2l32_A Small archaeal modifier 96.5 0.0036 1.2E-07 40.5 4.6 58 39-105 3-63 (74)
14 1vjk_A Molybdopterin convertin 95.7 0.022 7.5E-07 38.1 5.4 55 48-104 27-94 (98)
15 1rws_A Hypothetical protein PF 95.7 0.01 3.5E-07 38.2 3.6 54 47-104 20-73 (77)
16 3po0_A Small archaeal modifier 94.8 0.078 2.7E-06 34.4 6.0 51 51-103 21-84 (89)
17 3kew_A DHHA1 domain protein; s 94.6 0.023 7.9E-07 44.2 3.4 50 82-134 65-114 (241)
18 2q5w_D Molybdopterin convertin 94.6 0.037 1.3E-06 34.9 3.8 51 52-104 20-73 (77)
19 2e1b_A PH0108, 216AA long hypo 94.5 0.023 7.7E-07 43.4 3.1 21 114-134 95-115 (216)
20 1fm0_D Molybdopterin convertin 93.0 0.37 1.3E-05 30.4 6.4 46 58-104 25-77 (81)
21 2eki_A DRG 1, developmentally- 92.5 0.72 2.5E-05 31.1 7.5 54 52-107 29-90 (93)
22 2g1e_A Hypothetical protein TA 92.0 0.41 1.4E-05 30.7 5.7 52 51-104 18-86 (90)
23 2hj1_A Hypothetical protein; s 90.7 0.43 1.5E-05 32.2 4.9 56 52-109 30-90 (97)
24 2ztg_A Alanyl-tRNA synthetase; 89.1 0.23 7.8E-06 44.6 3.1 21 114-134 596-616 (739)
25 3rpf_C Molybdopterin convertin 88.7 0.76 2.6E-05 28.7 4.6 52 50-104 14-70 (74)
26 2zze_A Alanyl-tRNA synthetase; 87.7 0.32 1.1E-05 43.7 3.1 21 114-134 609-629 (752)
27 3dwg_C 9.5 kDa culture filtrat 86.9 1.1 3.8E-05 29.0 4.8 50 51-103 20-88 (93)
28 2l52_A Methanosarcina acetivor 83.9 2.6 8.7E-05 27.9 5.5 51 51-104 22-95 (99)
29 1v8c_A MOAD related protein; r 79.4 2.8 9.6E-05 30.6 4.8 46 59-105 23-84 (168)
30 1wxq_A GTP-binding protein; st 78.6 2 6.8E-05 35.2 4.1 53 50-104 341-395 (397)
31 2qjl_A URM1, ubiquitin-related 74.4 9.4 0.00032 24.9 5.9 45 58-103 31-94 (99)
32 1wgk_A Riken cDNA 2900073H19 p 53.1 28 0.00094 23.6 5.1 51 52-103 34-103 (114)
33 2io0_B Small ubiquitin-related 36.1 72 0.0025 20.4 4.9 51 37-90 4-58 (91)
34 2io1_B Small ubiquitin-related 28.8 1.2E+02 0.004 19.5 5.5 64 37-103 6-78 (94)
35 2cu1_A Mitogen-activated prote 27.6 1.1E+02 0.0037 20.7 4.6 47 37-84 7-53 (103)
36 3a4r_A Nfatc2-interacting prot 27.6 1.1E+02 0.0038 18.8 5.8 46 37-84 6-56 (79)
37 2gu3_A YPMB protein; APC1927, 27.5 1.5E+02 0.0052 20.4 6.5 52 58-110 74-129 (136)
38 2al3_A TUG long isoform; TUG U 25.5 1.5E+02 0.005 19.5 5.7 58 47-106 17-83 (90)
39 2uyz_B Small ubiquitin-related 23.5 1.2E+02 0.0042 17.9 6.4 47 36-84 1-51 (79)
40 2k9x_A Tburm1, uncharacterized 22.7 58 0.002 21.8 2.6 44 59-103 35-97 (110)
41 2jxx_A Nfatc2-interacting prot 22.5 1.7E+02 0.0057 19.1 5.1 46 37-84 24-74 (97)
42 3tix_A Ubiquitin-like protein 22.3 23 0.00079 27.0 0.5 64 37-103 56-127 (207)
43 3c8y_A Iron hydrogenase 1; dit 20.3 2E+02 0.0069 24.3 6.1 41 39-84 2-56 (574)
44 2bt6_A Adrenodoxin 1; rutheniu 20.3 1.1E+02 0.0036 19.7 3.5 29 39-69 7-37 (108)
No 1
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.84 E-value=3.2e-21 Score=149.83 Aligned_cols=88 Identities=18% Similarity=0.358 Sum_probs=84.1
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHH
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrh 118 (136)
++|++ |||+.++++. ++|+.|+|+.++..+.+.+++|+|||+ ++||++|++.|+.|++|++++++|+ ++|||
T Consensus 2 i~I~~---p~G~~~~~~~-g~T~~dia~~i~~~l~~~~vaakvNg~-l~dL~~~l~~~~~ve~it~~~~~g~---~~~~H 73 (224)
T 1tke_A 2 PVITL---PDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGE-LVDACDLIENDAQLSIITAKDEEGL---EIIRH 73 (224)
T ss_dssp CEEEC---TTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTE-EEETTCCBCSCEEEEEECTTSHHHH---HHHHH
T ss_pred eEEEe---CCCCEEEecC-CCCHHHHHHHHhhhcccceEEEEECCE-EeccceEcCCCCeEEEEecCchhHH---HHHHH
Confidence 56777 8999999999 599999999999999999999999999 9999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhcCC
Q psy2360 119 SCSIMLGSVLSNAFKD 134 (136)
Q Consensus 119 S~ahlLa~Av~~lfp~ 134 (136)
|++|||++|++++||+
T Consensus 74 S~~HlL~~A~~~~~~~ 89 (224)
T 1tke_A 74 SCAHLLGHAIKQLWPH 89 (224)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999999986
No 2
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.80 E-value=2.7e-20 Score=163.74 Aligned_cols=88 Identities=18% Similarity=0.358 Sum_probs=84.6
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHH
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrh 118 (136)
|+|++ |||+.++++. ++|+.+||+.|++.+++.+++|+|||+ +|||++|++.||+|++|+++|++|+ .++||
T Consensus 2 ~~~~~---~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~-~~dl~~~l~~d~~~~~~~~~~~~~~---~~~~H 73 (642)
T 1qf6_A 2 PVITL---PDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGE-LVDACDLIENDAQLSIITAKDEEGL---EIIRH 73 (642)
T ss_dssp CEEEC---TTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTE-EEETTSCBCSCEECCEECTTSHHHH---HHHHH
T ss_pred ceEEc---CCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCE-EeccccccCCCceEEEeecCcHHHH---HHHHH
Confidence 67888 9999999988 599999999999999999999999999 9999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhcCC
Q psy2360 119 SCSIMLGSVLSNAFKD 134 (136)
Q Consensus 119 S~ahlLa~Av~~lfp~ 134 (136)
|++|||++|++++||+
T Consensus 74 Sa~HlL~~Al~~~~~~ 89 (642)
T 1qf6_A 74 SCAHLLGHAIKQLWPH 89 (642)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999987
No 3
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.79 E-value=3.8e-20 Score=162.39 Aligned_cols=91 Identities=21% Similarity=0.402 Sum_probs=84.6
Q ss_pred cCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhH
Q psy2360 36 IEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRT 115 (136)
Q Consensus 36 ~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~v 115 (136)
|++++|++ |||+.++++. ++|+.+||+.+++.+++.+++|+|||+ ++||++|++.||+|+||+++|++|+ ++
T Consensus 1 ~~~~~i~~---~dg~~~~~~~-g~t~~~ia~~~~~~~~~~~v~~~vng~-~~dl~~~l~~d~~v~~~~~~~~~g~---~~ 72 (645)
T 1nyr_A 1 MEQINIQF---PDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQ-LVDLTKPLETDGSIEIVTPGSEEAL---EV 72 (645)
T ss_dssp ---CBBCC---TTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTE-EECTTSCCCSCBCCCEECTTSHHHH---HH
T ss_pred CCceEEEe---CCCCEEEecC-CCCHHHHHHHhhhhcccCeEEEEECCE-EEeCCcccCCCCeEEEeeccchhHH---HH
Confidence 34677888 9999999988 599999999999999999999999999 9999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q psy2360 116 FWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 116 yrhS~ahlLa~Av~~lfp~ 134 (136)
||||++|||++|++++||+
T Consensus 73 ~~HSa~HlL~~A~~~~~~~ 91 (645)
T 1nyr_A 73 LRHSTAHLMAHAIKRLYGN 91 (645)
T ss_dssp HHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999986
No 4
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-19 Score=120.81 Aligned_cols=78 Identities=36% Similarity=0.644 Sum_probs=72.2
Q ss_pred CceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHH
Q psy2360 37 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTF 116 (136)
Q Consensus 37 ~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vy 116 (136)
.+++|++ |||+.++++.+++|+.|+|+.++..+.+.+++|+|||+ ++||+++++.||.||||++++++|+ ++|
T Consensus 10 ~~i~I~l---pdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~-l~dL~~~l~~d~~ve~vt~~~~eg~---~i~ 82 (88)
T 1wwt_A 10 KPIKVTL---PDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNV-VWDLDRPLEEDCTLELLKFEDEEAQ---AVY 82 (88)
T ss_dssp CEEEEEC---TTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSS-EECSSSCCCSSEEEEECSSCCSCCS---CSC
T ss_pred CCEEEEE---CCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCE-EECCCcCcCCCCEEEEEeCCCHHHh---hhe
Confidence 4577888 89999999884599999999999999999999999999 9999999999999999999999999 999
Q ss_pred HHHHH
Q psy2360 117 WRSCS 121 (136)
Q Consensus 117 rhS~a 121 (136)
|||++
T Consensus 83 rHS~~ 87 (88)
T 1wwt_A 83 SGPSS 87 (88)
T ss_dssp CCCSC
T ss_pred eccCC
Confidence 99974
No 5
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.35 E-value=3.7e-12 Score=82.09 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=59.3
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCC
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSD 108 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~ 108 (136)
|.|++ |+|+.++++. ++|+.++++.++..++++++++++||+ ++||++++++++.|||+++.+..
T Consensus 3 i~i~~---p~g~~~~~~~-g~T~~dla~~i~~~l~~~~vaa~vNg~-lvdl~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 3 VMVFT---PKGEIKRLPQ-GATALDFAYSLHSDLGDHCIGAKVNHK-LVPLSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp EEEEC---TTCCEEEECT-TCBHHHHHHHHCSHHHHTEEEEEETTE-ECCTTCBCCSSSBEEEEECCCCC
T ss_pred EEEEc---CCCCEEEcCC-CCcHHHHHHHHhhccccceEEEEECCE-EeCCCcCcCCCCEEEEEECCCCc
Confidence 56666 8999999998 599999999998888889999999999 99999999999999999998765
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.16 E-value=1.1e-10 Score=77.57 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=59.2
Q ss_pred CceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCC
Q psy2360 37 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSD 108 (136)
Q Consensus 37 ~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~ 108 (136)
+.|.|.. |+|..+++++ ++|+.|+|..+.+.+.+.+++|+|||+ ++||+++|++++.||+++.+.-+
T Consensus 6 ~~i~v~t---P~G~~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkVNG~-~v~L~~~L~~gd~VeIit~~~~~ 72 (78)
T 3hvz_A 6 EEVFVFT---PKGDVISLPI-GSTVIDFAYAIHSAVGNRMIGAKVDGR-IVPIDYKVKTGEIIDVLTTKELE 72 (78)
T ss_dssp CEEEEEC---TTSCEEEEET-TCBHHHHHHHHCHHHHHTEEEEEETTE-EECTTCBCCTTCBEEEEECC---
T ss_pred ceEEEEC---CCCCEEEecC-CCCHHHHHHHhhhhhhcceEEEEECCE-EcCCCcccCCCCEEEEEccCccc
Confidence 3466776 9999999999 599999999999999999999999999 99999999999999999976543
No 7
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.26 E-value=0.00062 Score=45.65 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=47.3
Q ss_pred CcCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec----ccccCCCCceEEecc
Q psy2360 35 RIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF 104 (136)
Q Consensus 35 ~~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~ 104 (136)
.+..|+|++ +|+.++++.+.+|+.++++.+.. ....+++.+||+ +.+- .++|.++.+|+++.+
T Consensus 17 ~~~~M~I~v----NGe~~el~~~~~Tv~dLL~~L~~--~~~~vaVavNg~-iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 17 IGGRHMLQL----NGKDVKWKKDTGTIQDLLASYQL--ENKIVIVERNKE-IIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp -----CEEE----TTEEECCSSSCCBHHHHHHHTTC--TTSCCEEEETTE-EECGGGTTTSBCCSSSEEEEEEE
T ss_pred CCcceEEEE----CCEEEECCCCCCcHHHHHHHhCC--CCCCEEEEECCE-ECChhhcCCcCCCCCCEEEEEcc
Confidence 345688899 88899987732899999998754 345677999999 8765 578999999999875
No 8
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=97.11 E-value=0.0011 Score=41.59 Aligned_cols=58 Identities=7% Similarity=0.129 Sum_probs=47.3
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec----ccccCCCCceEEecc
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF 104 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~ 104 (136)
|+|++ +|+.++++. ++|+.++.+.+.. ....+++.+||+ +.+- .+++.++.+|+++.+
T Consensus 1 m~i~v----Ng~~~~~~~-~~tv~~ll~~l~~--~~~~v~vavN~~-~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 1 MQILF----NDQAMQCAA-GQTVHELLEQLDQ--RQAGAALAINQQ-IVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp CCEEE----SSCEECCCT-TCCHHHHHHHHTC--CCSSEEEEETTE-EECHHHHTTCCCCTTEEECEEES
T ss_pred CEEEE----CCEEEEcCC-CCcHHHHHHHcCC--CCCCEEEEECCE-ECCchhcCCcCCCCCCEEEEEee
Confidence 46788 888899888 5999999998754 345678999999 8765 789999999999875
No 9
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.08 E-value=0.0016 Score=41.44 Aligned_cols=59 Identities=7% Similarity=-0.010 Sum_probs=47.8
Q ss_pred ceEEEeeeCCCCcE----EEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 38 KINVTYKGLPEDAE----LIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 38 ~i~i~~~~~~dg~~----~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
.|+|++ +|+. ++++. ++|+.++.+.+... ...+++.+||+ +.+..+++.++.+|+++.+
T Consensus 4 ~m~i~v----Ng~~~~~~~~~~~-~~tv~~Ll~~l~~~--~~~v~vavN~~-~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTV----ITDDGKKILESGA-PRRIKDVLGELEIP--IETVVVKKNGQ-IVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEE----EETTEEEEEEESS-CCBHHHHHHHTTCC--TTTEEEEETTE-ECCTTSBCCTTCEEEEEEC
T ss_pred eEEEEE----eCccCceeEECCC-CCcHHHHHHHhCCC--CCCEEEEECCE-ECCCcccCCCCCEEEEEec
Confidence 477888 4555 88877 49999999987543 45567999999 9999999999999999875
No 10
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.84 E-value=0.002 Score=42.14 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=47.4
Q ss_pred eEEEeeeCCCCcEEEee--cCCCCHHHHHHhhchhhhccceEEEEcCeeeeecc----cccCCCCceEEeccC
Q psy2360 39 INVTYKGLPEDAELIMN--KNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHFY 105 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~--~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~----~~l~~d~~Ie~i~~~ 105 (136)
|+|++ +|+.++++ . ++|+.++++.+.... ..-+++.+||. +..-. ++|.++..||++.+=
T Consensus 1 M~I~v----NGe~~e~~~~~-~~Tl~~LL~~l~~~~-~~~vAVavNg~-iVpr~~~~~~~L~dGD~IEIv~~V 66 (78)
T 2k5p_A 1 MNLTV----NGKPSTVDGAE-SLNVTELLSALKVAQ-AEYVTVELNGE-VLEREAFDATTVKDGDAVEFLYFM 66 (78)
T ss_dssp CEEEE----TTEEEECSSCS-CEEHHHHHHHHTCSC-TTTCCEEETTE-ECCTTHHHHCEECSSBCEEECCCC
T ss_pred CEEEE----CCEEEEcCCCC-CCcHHHHHHHcCCCC-CCcEEEEECCE-ECChHHcCcccCCCCCEEEEEeee
Confidence 46888 78899987 7 599999999875321 34567999999 87654 789999999999863
No 11
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.83 E-value=0.0021 Score=41.49 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=46.4
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec----ccccCCCCceEEeccC
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHFY 105 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~~ 105 (136)
|+|++ +|+.+++ . ++|+.++++.+... ..-+++.+||. +..- .+++.++..||++.+=
T Consensus 1 M~I~v----NG~~~e~-~-~~Tl~~LL~~l~~~--~~~vAV~vNg~-iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 1 MLVTI----NGEQREV-Q-SASVAALMTELDCT--GGHFAVALNYD-VVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp CCEEE----TTEEECC-C-CSBHHHHHHHTTCC--SSSCEEEESSS-EECHHHHTTCBCCTTCEEEEECCC
T ss_pred CEEEE----CCEEEEc-C-CCcHHHHHHHcCCC--CCcEEEEECCE-ECChHHcCcccCCCCCEEEEEccc
Confidence 46788 7888888 6 49999999987543 45568999999 7665 4789999999999864
No 12
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=96.81 E-value=0.0046 Score=38.43 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=45.1
Q ss_pred EEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecc----cccCCCCceEEecc
Q psy2360 41 VTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHF 104 (136)
Q Consensus 41 i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~----~~l~~d~~Ie~i~~ 104 (136)
|++ +|+.+++ . ++|+.++.+.+... ...+++.+||+ +.+.. +++.++.+|+++.+
T Consensus 2 i~v----Ng~~~~~-~-~~tv~~ll~~l~~~--~~~v~vavN~~-~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 2 VWL----NGEPRPL-E-GKTLKEVLEEMGVE--LKGVAVLLNEE-AFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EEE----TTEEECC-T-TCCHHHHHHHHTBC--GGGEEEEETTE-EEEGGGCCCCCCCTTCEEEEEEC
T ss_pred EEE----CCEEEEc-C-CCcHHHHHHHcCCC--CCcEEEEECCE-ECCccccCCcCCCCCCEEEEEee
Confidence 567 7888888 6 49999999987543 45678999999 88865 89999999999875
No 13
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.52 E-value=0.0036 Score=40.49 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=44.7
Q ss_pred eEEEeeeCCCCcE---EEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccC
Q psy2360 39 INVTYKGLPEDAE---LIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105 (136)
Q Consensus 39 i~i~~~~~~dg~~---~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~ 105 (136)
++|++ . |.. ++++. ++|+.|+++.+... ..-+++.+||+ ..+.+++++ +..|+++.+=
T Consensus 3 v~Vkl---~-g~~~~~~ev~~-g~Tv~dLL~~Lgl~--~~~VvV~vNG~-~v~~d~~l~-GD~VeIv~~V 63 (74)
T 2l32_A 3 VTVEV---V-GEETSEVAVDD-DGTYADLVRAVDLS--PHEVTVLVDGR-PVPEDQSVE-VDRVKVLRLI 63 (74)
T ss_dssp EEEEC---S-SSSEEEEECST-TCSHHHHHHTTCCC--SSCCCEECCCC-CCCTTSSSC-CCCEEECSSC
T ss_pred EEEEE---e-CccceeEEcCC-CCcHHHHHHHcCCC--cceEEEEECCE-ECCHHHCCC-CCEEEEEEee
Confidence 55565 3 444 78888 59999999998654 33447999999 999999886 8899998874
No 14
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=95.68 E-value=0.022 Score=38.09 Aligned_cols=55 Identities=9% Similarity=0.092 Sum_probs=42.6
Q ss_pred CCcEEEeecCCCCHHHHHHhhchhhh-------------ccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 48 EDAELIMNKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 48 dg~~~~~~~~~tt~~dia~~i~~~~~-------------~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
+...++++. ++|+.++.+.+...++ ...+++.|||+ .+++++++.++.+|.|+..
T Consensus 27 ~~~~~e~~~-~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~-~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 27 DEEEIELPE-GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGR-YVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp SEEEEEECT-TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTB-CCCTTCBCCTTCEEEEESC
T ss_pred CeEEEECCC-CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCE-ECCCCCCCCCCCEEEEECC
Confidence 344566666 4899999988765432 25678999999 9999999999999999864
No 15
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=95.67 E-value=0.01 Score=38.17 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=43.8
Q ss_pred CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
.++..++++. ++|+.++++.+... ...+++.+||+ +.+..+++.++.+|+++..
T Consensus 20 ~n~~~~~~~~-~~Tv~dLl~~L~~~--~~~v~VavNg~-~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 20 NIEKEIEWRE-GMKVRDILRAVGFN--TESAIAKVNGK-VVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCCCCCS-SCCHHHHHHTTTCS--SCSSCEEETTE-EECSSSCCCSSCCCBCSCC
T ss_pred cCCEEEECCC-CCcHHHHHHHhCCC--CcCEEEEECCE-ECCCCCCcCCCCEEEEEcc
Confidence 3677777777 48999999987532 34568899999 9999999999999999864
No 16
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.83 E-value=0.078 Score=34.40 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=39.2
Q ss_pred EEEeecCCCCHHHHHHhhchhhhc-------------cceEEEEcCeeeeecccccCCCCceEEec
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEMLCD-------------RSVLALIDGVKLWDMHRPLESDCELQLLH 103 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~~~-------------~iv~a~vng~~l~DL~~~l~~d~~Ie~i~ 103 (136)
.++++. ++|..++.+.+...++. +.+...|||+ .++.++++.++.+|.|+.
T Consensus 21 ~~~~~~-~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~-~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 21 RVDVDG-DATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGE-AAALGEATAAGDELALFP 84 (89)
T ss_dssp EEECCT-TCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTE-ECCTTSBCCTTCEEEEEC
T ss_pred EEECCC-CCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCE-ECCCCcccCCCCEEEEEC
Confidence 344545 48999998887654432 2378889999 999999999999999875
No 17
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=94.63 E-value=0.023 Score=44.17 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=31.5
Q ss_pred cCeeeeecccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcCC
Q psy2360 82 DGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 82 ng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~ 134 (136)
+|..++-+..++..+..++..- +...+...+.|||++|||++|++++||.
T Consensus 65 ~g~i~H~~~~~l~~g~~V~~~v---D~~rR~~~~~~HTa~HLL~~al~~~~g~ 114 (241)
T 3kew_A 65 EGKVYHVLEKEPKKLKNLQCEL---DWERRFDGMQQHLGQHLLSGCFYDLFGA 114 (241)
T ss_dssp TTEEEEEESSCCCCCSSEEEEE---CHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEEECCcCCCCCEEEEEE---CHHHhhhHHHHHHHHHHHHHHHHHHCCC
Confidence 4542333444555555555432 1122223689999999999999999985
No 18
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=94.61 E-value=0.037 Score=34.90 Aligned_cols=51 Identities=6% Similarity=0.046 Sum_probs=38.6
Q ss_pred EEeecCCCCHHHHHHhhchhhhc-cce--EEEEcCeeeeecccccCCCCceEEecc
Q psy2360 52 LIMNKNLSTPYNCAQHMSEMLCD-RSV--LALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 52 ~~~~~~~tt~~dia~~i~~~~~~-~iv--~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
++++. ++|+.++.+.+...++. .-+ +..+||+ +.+.++++.++.+|+++..
T Consensus 20 ~~~~~-~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~-~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 20 IVLEQ-ALTVQQFEDLLFERYPQINNKKFQVAVNEE-FVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp CCCSS-CEEHHHHHHHHHHHCGGGTTCCCEEEETTE-EECTTSEECTTCEEEEECS
T ss_pred EECCC-CCCHHHHHHHHHHHCcchhcceEEEEECCE-ECCCCCCcCCCCEEEEECC
Confidence 34445 47999998887654322 224 7889999 9999999999999999864
No 19
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=94.52 E-value=0.023 Score=43.44 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q psy2360 114 RTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~lfp~ 134 (136)
.+.|||++|||++|++++||.
T Consensus 95 ~~~~HTA~HlL~~Al~~~~g~ 115 (216)
T 2e1b_A 95 LMRIHTGLHLLEHVLNEVLGE 115 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHcCC
Confidence 689999999999999999986
No 20
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.04 E-value=0.37 Score=30.36 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=36.3
Q ss_pred CCCHHHHHHhhchhhh-------ccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360 58 LSTPYNCAQHMSEMLC-------DRSVLALIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 58 ~tt~~dia~~i~~~~~-------~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
++|+.++.+.+...++ ..-+++.+||+ +.++++++.++.+|.++..
T Consensus 25 ~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~-~v~~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 25 FPTVEALRQHMAAQSDRWALALEDGKLLAAVNQT-LVSFDHPLTDGDEVAFFPP 77 (81)
T ss_dssp CSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTE-ECCTTCBCCTTCEEEEECC
T ss_pred CCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCE-ECCCCCCCCCCCEEEEeCC
Confidence 5899999888764321 23467999999 9999999999999999853
No 21
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=92.48 E-value=0.72 Score=31.09 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=45.1
Q ss_pred EEe-ecCCCCHHHHHHhhchhhhccceEEEE-------cCeeeeecccccCCCCceEEeccCCC
Q psy2360 52 LIM-NKNLSTPYNCAQHMSEMLCDRSVLALI-------DGVKLWDMHRPLESDCELQLLHFYDS 107 (136)
Q Consensus 52 ~~~-~~~~tt~~dia~~i~~~~~~~iv~a~v-------ng~~l~DL~~~l~~d~~Ie~i~~~s~ 107 (136)
+.+ ++ ++|+.|++..|-..+.+.+.-|.| ||+ -+.+++.|++..-|++++-..+
T Consensus 29 viL~~~-GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~q-rVgldh~L~d~DVV~Iv~~~~~ 90 (93)
T 2eki_A 29 VVLPYS-RTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQ-KVGKDHTLEDEDVIQIVKKSGP 90 (93)
T ss_dssp EEEETT-SCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSE-EECSSCCCCSSEEECEEECCSC
T ss_pred EEEecC-CCCHHHHHHHHHHHHHhhccEEEEecccccCCCE-ECCCCcEecCCCEEEEEeCCCC
Confidence 677 67 599999999999988888766665 899 9999999998888999886544
No 22
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=91.97 E-value=0.41 Score=30.66 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=39.6
Q ss_pred EEEeecCCCCHHHHHHhhchhhh-------------ccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGVKLWD----MHRPLESDCELQLLHF 104 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~~-------------~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~ 104 (136)
..+++. ++|+.++.+.+...++ ...+++.+||+ .++ +++++.++.+|.|+..
T Consensus 18 ~~~~~~-~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~-~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 18 EETFNG-ISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGN-NITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESS-CCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSS-BGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEEcCC-CCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCE-EccccCCCCcCCCCCCEEEEeCC
Confidence 456655 4899999988765431 14568999999 775 7999999999999864
No 23
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=90.68 E-value=0.43 Score=32.22 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=41.3
Q ss_pred EEeecCCCCHHHHHHhhchhhhc-----cceEEEEcCeeeeecccccCCCCceEEeccCCCCC
Q psy2360 52 LIMNKNLSTPYNCAQHMSEMLCD-----RSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDP 109 (136)
Q Consensus 52 ~~~~~~~tt~~dia~~i~~~~~~-----~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g 109 (136)
++++. ++|..++++........ ..++.-|||+ ..+++++|.++..||++.+=.-|-
T Consensus 30 ~~v~~-g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~-~v~~d~~L~dGDRVEIyrpl~~DP 90 (97)
T 2hj1_A 30 FQVDE-GITVQTAITQSGILSQFPEIDLSTNKIGIFSR-PIKLTDVLKEGDRIEIYRPLLADP 90 (97)
T ss_dssp EEEET-TCBHHHHHHHHTHHHHCTTCCTTTSEEEEEEC-SCCTTCBCCTTCEEEECCCCC---
T ss_pred EEcCC-CCcHHHHHHHcCCCccCCcccccccEEEEcCE-ECCCCccCCCCCEEEEEecccCCH
Confidence 46777 59999999886543221 1467889999 999999999999999987654333
No 24
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=89.06 E-value=0.23 Score=44.57 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q psy2360 114 RTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~lfp~ 134 (136)
.+++||++|||.+|++++||.
T Consensus 596 ~m~~HTAtHLL~~ALr~vlG~ 616 (739)
T 2ztg_A 596 HMRHHSATHVLLYSLQKVLGN 616 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 599999999999999999985
No 25
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=88.66 E-value=0.76 Score=28.72 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=39.5
Q ss_pred cEEEeecCCCCHHHHHHhhchhh--hc--cceEEEEcCeee-eecccccCCCCceEEecc
Q psy2360 50 AELIMNKNLSTPYNCAQHMSEML--CD--RSVLALIDGVKL-WDMHRPLESDCELQLLHF 104 (136)
Q Consensus 50 ~~~~~~~~~tt~~dia~~i~~~~--~~--~iv~a~vng~~l-~DL~~~l~~d~~Ie~i~~ 104 (136)
.+++. . ++|+.++.+.+.... .+ ..++..+||+ + .+.++++.++++|.++..
T Consensus 14 ~~~e~-~-~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~-~v~~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 14 ENFFI-K-ANDLKELRAILQEKEGLKEWLGVCAIALNDH-LIDNLNTPLKDGDVISLLPP 70 (74)
T ss_dssp CCEEE-E-CSSHHHHHHHHHTCTTTTTTTTTCEEEESSS-EECCTTCCCCTTCEEEEECC
T ss_pred eEEee-C-CCcHHHHHHHHHHCcCHHHHhhccEEEECCE-EcCCCCcCCCCCCEEEEECC
Confidence 34666 4 489999998876531 11 4578899999 6 789999999999998853
No 26
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=87.66 E-value=0.32 Score=43.74 Aligned_cols=21 Identities=10% Similarity=0.034 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q psy2360 114 RTFWRSCSIMLGSVLSNAFKD 134 (136)
Q Consensus 114 ~vyrhS~ahlLa~Av~~lfp~ 134 (136)
.+.+||++|||++|++++||.
T Consensus 609 ~mr~HTAtHLL~~ALr~vlG~ 629 (752)
T 2zze_A 609 HMRHHTGTHVLMGALVRVLGR 629 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhHHHHHHHHHHHHHcCC
Confidence 588999999999999999985
No 27
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=86.94 E-value=1.1 Score=29.02 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=37.6
Q ss_pred EEEeecCCCCHHHHHHhhchhhhc---------------cceEEEEcCeeeee----cccccCCCCceEEec
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEMLCD---------------RSVLALIDGVKLWD----MHRPLESDCELQLLH 103 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~~~---------------~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~ 103 (136)
.++. . ++|+.++...+...++. +.+...|||+ .++ +++++.++.+|.|+.
T Consensus 20 ~~~~-~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~-~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 20 SVSA-S-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDE-DVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEEE-C-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTE-EGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEec-C-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCE-EccCcCCCCcCCCCCCEEEEEC
Confidence 4453 4 48999999887654321 1478999999 776 799999999999875
No 28
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=83.86 E-value=2.6 Score=27.86 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=38.0
Q ss_pred EEEeecCCCCHHHHHHhhchhhh---cc---------ce-------EEEEcCeeee----ecccccCCCCceEEecc
Q psy2360 51 ELIMNKNLSTPYNCAQHMSEMLC---DR---------SV-------LALIDGVKLW----DMHRPLESDCELQLLHF 104 (136)
Q Consensus 51 ~~~~~~~~tt~~dia~~i~~~~~---~~---------iv-------~a~vng~~l~----DL~~~l~~d~~Ie~i~~ 104 (136)
..+++ ..|+.++.+.+...++ .. -+ ++.|||+ .+ ++++++.++.+|.++..
T Consensus 22 ~~~l~--~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~-~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 22 ELPLS--GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGN-NIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp EEEEE--CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTS-CGGGTTSTTSCCCTTEEEEEECC
T ss_pred eEEEe--CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCE-EccccCCCCCCCCCCCEEEEECC
Confidence 45555 3899999988755432 21 24 7899999 77 78999999999999864
No 29
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=79.44 E-value=2.8 Score=30.62 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=36.4
Q ss_pred CCHHHHHHhhchhhh------------ccceEEEEcCeeeeec----ccccCCCCceEEeccC
Q psy2360 59 STPYNCAQHMSEMLC------------DRSVLALIDGVKLWDM----HRPLESDCELQLLHFY 105 (136)
Q Consensus 59 tt~~dia~~i~~~~~------------~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~~ 105 (136)
+|+.++.+.+...++ ...+++.|||+ .++. ++++.++.+|.|+..-
T Consensus 23 ~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~-~v~~~~~~dt~L~dGDeVai~PpV 84 (168)
T 1v8c_A 23 ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGR-DVRYLQGLSTPLSPGATLDLFPPV 84 (168)
T ss_dssp SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTE-EGGGTTGGGCBCCTTCEEEEECSC
T ss_pred CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCE-ECCCcCCCccCCCCCCEEEEECcc
Confidence 799998888755431 24578999999 8877 8999999999998754
No 30
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=78.62 E-value=2 Score=35.21 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=45.2
Q ss_pred cEEEeecCCCCHHHHHHhhchhhhccceEE--EEcCeeeeecccccCCCCceEEecc
Q psy2360 50 AELIMNKNLSTPYNCAQHMSEMLCDRSVLA--LIDGVKLWDMHRPLESDCELQLLHF 104 (136)
Q Consensus 50 ~~~~~~~~~tt~~dia~~i~~~~~~~iv~a--~vng~~l~DL~~~l~~d~~Ie~i~~ 104 (136)
....+++ ++|+.|+|..+-....+..+.| .+||+ ...+.++++++.-|+|++-
T Consensus 341 ~~~~l~~-G~t~~d~a~~iH~d~~~~f~~a~~~~~~~-~~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 341 HVFLMKK-GSTPRDLAFKVHTDLGKGFLYAINARTKR-RVGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp CCEEEET-TCCHHHHHHHHCHHHHHTEEEEEETTTCS-BCCTTCCCCTTEEEEEEEC
T ss_pred eeEEeCC-CCCHHHHHHHHhHHHHhhhhhhHHhcCCE-EcCCCccccCCCEEEEEeC
Confidence 4566777 5999999999999888888888 77888 8899999998888998874
No 31
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=74.39 E-value=9.4 Score=24.91 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=33.5
Q ss_pred CCCHHHHHHhhchhhhc---------------cceEEEEcCeeeee----cccccCCCCceEEec
Q psy2360 58 LSTPYNCAQHMSEMLCD---------------RSVLALIDGVKLWD----MHRPLESDCELQLLH 103 (136)
Q Consensus 58 ~tt~~dia~~i~~~~~~---------------~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~ 103 (136)
++|..++...+...++. +.+...|||+ .|+ +.+++.++.+|-|+-
T Consensus 31 ~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~-~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 31 PVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDT-DWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp CCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTE-EGGGGTGGGCBCCTTCEEEEEE
T ss_pred CCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCE-EccccCCCCcCcCCCCEEEEEC
Confidence 48999988887644321 1246889999 765 789999999988874
No 32
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=53.12 E-value=28 Score=23.61 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=37.0
Q ss_pred EEeec--CCCCHHHHHHhhchhh-------------hccceEEEEcCeeee----ecccccCCCCceEEec
Q psy2360 52 LIMNK--NLSTPYNCAQHMSEML-------------CDRSVLALIDGVKLW----DMHRPLESDCELQLLH 103 (136)
Q Consensus 52 ~~~~~--~~tt~~dia~~i~~~~-------------~~~iv~a~vng~~l~----DL~~~l~~d~~Ie~i~ 103 (136)
++++. +..|..+++..+...+ -.+-+.+.|||+ -| .+.++++++.+|.|+.
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~-di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDA-DWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSS-BHHHHCTTTCBCCSSEEEEEEE
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCe-eeeccCCcCcCCCCCCEEEEeC
Confidence 55552 2369999998876543 234578999997 44 4889999999988875
No 33
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=36.10 E-value=72 Score=20.44 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=31.0
Q ss_pred CceEEEeeeCCCCcE--EEeecCCCCHHHHHHhhchhh--hccceEEEEcCeeeeecc
Q psy2360 37 EKINVTYKGLPEDAE--LIMNKNLSTPYNCAQHMSEML--CDRSVLALIDGVKLWDMH 90 (136)
Q Consensus 37 ~~i~i~~~~~~dg~~--~~~~~~~tt~~dia~~i~~~~--~~~iv~a~vng~~l~DL~ 90 (136)
+.|+|++.+ .+|+. +.+.. .+++..+.+.+.... +...+--.++|+ ..+-+
T Consensus 4 ~~i~ikVk~-~~g~~v~~~vk~-~t~l~kl~~~y~~~~gi~~~~~rf~FdG~-~l~~~ 58 (91)
T 2io0_B 4 DHINLKVAG-QDGSVVQFKIKR-HTPLSKLMKAYCERQGLSMRQIRFRFDGQ-PINET 58 (91)
T ss_dssp CEEEEEEEC-TTSCEEEEEEET-TSCTHHHHHHHHHHTTCCSTTEEEEETTE-ECCTT
T ss_pred CeEEEEEEC-CCCCEEEEEECC-CChHHHHHHHHHHHhCCCcccEEEEECCE-EcCCC
Confidence 456777654 56665 44556 477888888776533 234456677998 44433
No 34
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=28.83 E-value=1.2e+02 Score=19.45 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=37.5
Q ss_pred CceEEEeeeCCCCcE--EEeecCCCCHHHHHHhhchhh--hccceEEEEcCeeeeeccccc-----CCCCceEEec
Q psy2360 37 EKINVTYKGLPEDAE--LIMNKNLSTPYNCAQHMSEML--CDRSVLALIDGVKLWDMHRPL-----ESDCELQLLH 103 (136)
Q Consensus 37 ~~i~i~~~~~~dg~~--~~~~~~~tt~~dia~~i~~~~--~~~iv~a~vng~~l~DL~~~l-----~~d~~Ie~i~ 103 (136)
+.|.|++++ .+|+. +.+.. .+++..+.+.+.... +..-+--.++|+ ..+-+.++ +++..|+++-
T Consensus 6 ~~i~ikVk~-~~g~~i~~~v~~-~t~l~kl~~~y~~~~gi~~~~~rf~FdG~-~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 6 DHINLKVAG-QDGSVVQFKIKR-HTPLSKLMKAYCERQGLSMRQIRFRFDGQ-PINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp CEEEEEEEC-TTSCEEEEEEET-TSCTHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEC-CCCCEEEEEECC-CCHHHHHHHHHHHHhCCCcccEEEEECCE-EcCCCCCHHHcCCCCCCEEEEEE
Confidence 457777754 45664 45556 478888888876533 234456677998 44433332 2445566554
No 35
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.65 E-value=1.1e+02 Score=20.72 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=34.2
Q ss_pred CceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCe
Q psy2360 37 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGV 84 (136)
Q Consensus 37 ~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~ 84 (136)
.++.|+++...+-..+.|+. ++++.|+.......+...+-+-..|++
T Consensus 7 ~dvRiKfE~~GEkRIi~f~R-Pv~f~eL~~Kv~~~fGq~ldL~y~n~E 53 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPR-PVKLEDLRSKAKIAFGQSMDLHYTNNE 53 (103)
T ss_dssp CEEEEEEEETTEEEEEEEES-SCCHHHHHHHHHHHHSSCEEEEECSSS
T ss_pred CcEEEEEEecCeEEEEeccC-CccHHHHHHHHHHHhCCeeeEEEecce
Confidence 45667765544444677888 799999999988877777766666665
No 36
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=27.60 E-value=1.1e+02 Score=18.76 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=28.8
Q ss_pred CceEEEeeeCCCCc-E--EEeecCCCCHHHHHHhhchhh--hccceEEEEcCe
Q psy2360 37 EKINVTYKGLPEDA-E--LIMNKNLSTPYNCAQHMSEML--CDRSVLALIDGV 84 (136)
Q Consensus 37 ~~i~i~~~~~~dg~-~--~~~~~~~tt~~dia~~i~~~~--~~~iv~a~vng~ 84 (136)
+.|.|++.+ .+|+ . +.+.. .+++..+.+.+.... +...+--.++|+
T Consensus 6 ~~i~ikV~~-~~g~~~i~~~i~~-~t~l~kl~~~y~~~~gi~~~~~rf~fdG~ 56 (79)
T 3a4r_A 6 QELRLRVQG-KEKHQMLEISLSP-DSPLKVLMSHYEEAMGLSGHKLSFFFDGT 56 (79)
T ss_dssp CCEEEEEEC-SSTTCEEEEEECT-TSCHHHHHHHHHHHHTCTTCCCEEEETTE
T ss_pred CEEEEEEEe-CCCCEEEEEEECC-CChHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 567777754 4664 3 55656 478888888876533 223455667888
No 37
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=27.54 E-value=1.5e+02 Score=20.37 Aligned_cols=52 Identities=13% Similarity=0.044 Sum_probs=33.7
Q ss_pred CCCHHHHHHhhchhh----hccceEEEEcCeeeeecccccCCCCceEEeccCCCCCc
Q psy2360 58 LSTPYNCAQHMSEML----CDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPY 110 (136)
Q Consensus 58 ~tt~~dia~~i~~~~----~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~ 110 (136)
++|-.++.+.+.... -..+.++..||+.+|++.+. ..++.+.+...+=++|.
T Consensus 74 GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~-~~~~~~~Y~~~~F~~G~ 129 (136)
T 2gu3_A 74 GISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYL-DKEGQYSLSYVDFTTGK 129 (136)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEE-CTTSCEEEEEEETTTCC
T ss_pred CCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEE-ccCCcEEEEEEEeeCCe
Confidence 577777665554332 25678888999879999986 44566665544444443
No 38
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=25.48 E-value=1.5e+02 Score=19.45 Aligned_cols=58 Identities=5% Similarity=0.095 Sum_probs=38.8
Q ss_pred CCCcE--EEeecCCCCHHHHHHhhchh--hhccceEEEEcCeeeeecccccC-----CCCceEEeccCC
Q psy2360 47 PEDAE--LIMNKNLSTPYNCAQHMSEM--LCDRSVLALIDGVKLWDMHRPLE-----SDCELQLLHFYD 106 (136)
Q Consensus 47 ~dg~~--~~~~~~~tt~~dia~~i~~~--~~~~iv~a~vng~~l~DL~~~l~-----~d~~Ie~i~~~s 106 (136)
++++. +.+.. .+++.||.++--.. +...--.-+-+++ ..||.-|+. .++++|++....
T Consensus 17 ~n~rr~~VKvtp-~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k-~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 17 PNGRRHTVKVTP-STVLLQVLEDTCRRQDFNPSEYDLKFQRT-VLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp TTSCEEEECCCT-TSBHHHHHHHHHHHTTCCGGGCEEEETTE-EESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred CCCcEEEEEECC-CCCHHHHHHHHHHHhCCChhhCeEEeCCE-eccccceeEecCCCCCCEEEEEEccC
Confidence 67764 44555 48899987773221 1222335577889 999999884 678999987653
No 39
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=23.47 E-value=1.2e+02 Score=17.87 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=28.1
Q ss_pred cCceEEEeeeCCCCcE--EEeecCCCCHHHHHHhhchhh--hccceEEEEcCe
Q psy2360 36 IEKINVTYKGLPEDAE--LIMNKNLSTPYNCAQHMSEML--CDRSVLALIDGV 84 (136)
Q Consensus 36 ~~~i~i~~~~~~dg~~--~~~~~~~tt~~dia~~i~~~~--~~~iv~a~vng~ 84 (136)
|+.|.|++++ .+|++ +++.. ..|..++.+.+.... +..-.--..+|+
T Consensus 1 m~~m~i~vk~-~~g~~~~~~v~~-~~tv~~lk~~i~~~~gi~~~~qrL~~~G~ 51 (79)
T 2uyz_B 1 MEYIKLKVIG-QDSSEIHFKVKM-TTHLKKLKESYCQRQGVPMNSLRFLFEGQ 51 (79)
T ss_dssp CCEEEEEEEC-TTCCEEEEEEET-TSCTHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred CCeEEEEEEC-CCCCEEEEEECC-CChHHHHHHHHHHHHCCCcccEEEEECCE
Confidence 5667777754 35554 45656 488888887776533 112233356787
No 40
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=22.69 E-value=58 Score=21.84 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=32.4
Q ss_pred CCHHHHHHhhchhh---------------hccceEEEEcCeeee----ecccccCCCCceEEec
Q psy2360 59 STPYNCAQHMSEML---------------CDRSVLALIDGVKLW----DMHRPLESDCELQLLH 103 (136)
Q Consensus 59 tt~~dia~~i~~~~---------------~~~iv~a~vng~~l~----DL~~~l~~d~~Ie~i~ 103 (136)
.|..++++.+...+ -.+-+++.|||. -| .+.++++++.+|.|+.
T Consensus 35 ~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~-d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 35 TNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSC-DAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp CCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSS-BHHHHTSSCCCCCSSCEEEEEE
T ss_pred ccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCe-eeeccCCcccCCCCcCEEEEeC
Confidence 58889888876542 112367899998 66 4889999999888854
No 41
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=22.49 E-value=1.7e+02 Score=19.10 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=29.1
Q ss_pred CceEEEeeeCCCCc---EEEeecCCCCHHHHHHhhchhh--hccceEEEEcCe
Q psy2360 37 EKINVTYKGLPEDA---ELIMNKNLSTPYNCAQHMSEML--CDRSVLALIDGV 84 (136)
Q Consensus 37 ~~i~i~~~~~~dg~---~~~~~~~~tt~~dia~~i~~~~--~~~iv~a~vng~ 84 (136)
+.|+|++.. .+|. .+.+.. .+++..+++.+.... ....+--.+||.
T Consensus 24 ~~I~LkV~~-~dg~~~v~fkIk~-~t~l~kLm~aY~~~~g~~~~~vrF~FDG~ 74 (97)
T 2jxx_A 24 QQLQLRVQG-KEKHQTLEVSLSR-DSPLKTLMSHYEEAMGLSGRKLSFFFDGT 74 (97)
T ss_dssp SEEEEEEEE-SSSSCEEEEEEET-TSCHHHHHHHHHHHTTCSSSCCEEEETTE
T ss_pred CeEEEEEEc-CCCCEEEEEEECC-CChHHHHHHHHHHHHCCCcccEEEEECCE
Confidence 467777644 5663 355666 477888888876533 234566677888
No 42
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=22.33 E-value=23 Score=26.95 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=36.1
Q ss_pred CceEEEeeeCCCCcEE--EeecCCCCHHHHHHhhchhh--hccceEEEEcCeeeeeccccc----CCCCceEEec
Q psy2360 37 EKINVTYKGLPEDAEL--IMNKNLSTPYNCAQHMSEML--CDRSVLALIDGVKLWDMHRPL----ESDCELQLLH 103 (136)
Q Consensus 37 ~~i~i~~~~~~dg~~~--~~~~~~tt~~dia~~i~~~~--~~~iv~a~vng~~l~DL~~~l----~~d~~Ie~i~ 103 (136)
+.|+|++. .+|+.+ .+.. .+++..|++.+.... +...+--.+||+.+.+=.+|- +++..|+++-
T Consensus 56 e~InLKVk--~dG~eV~FKIKr-tTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 56 THINLKVS--DGSSEIFFKIKK-TTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp CEEEEEEE--CSSCEEEEEEET-TSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred CcEEEEEe--cCCCEEEEEEcc-CChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 45777774 367654 4455 477778887775532 334455677998344433332 2344555543
No 43
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=20.33 E-value=2e+02 Score=24.31 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=30.3
Q ss_pred eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhh--------------ccceEEEEcCe
Q psy2360 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLC--------------DRSVLALIDGV 84 (136)
Q Consensus 39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~--------------~~iv~a~vng~ 84 (136)
|++++ ||+.++++. ++|+.+++.......+ =...++.+||.
T Consensus 2 v~~~i----ng~~v~v~~-g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~ 56 (574)
T 3c8y_A 2 KTIII----NGVQFNTDE-DTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGT 56 (574)
T ss_dssp EEEEE----TTEEEEECC-CCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTT
T ss_pred eEEEE----CCEEEEeCC-CCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCC
Confidence 56777 899999988 5999999988643111 14667888886
No 44
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=20.28 E-value=1.1e+02 Score=19.73 Aligned_cols=29 Identities=7% Similarity=0.009 Sum_probs=20.2
Q ss_pred eEEEeeeCCCCc--EEEeecCCCCHHHHHHhhc
Q psy2360 39 INVTYKGLPEDA--ELIMNKNLSTPYNCAQHMS 69 (136)
Q Consensus 39 i~i~~~~~~dg~--~~~~~~~~tt~~dia~~i~ 69 (136)
++|++.. ++|. +++++. +.|+.+++.+..
T Consensus 7 ~~V~~~~-~~g~~~~v~~~~-g~tLL~aa~~~g 37 (108)
T 2bt6_A 7 ITVHFIN-RDGETLTTKGKI-GDSLLDVVVQNN 37 (108)
T ss_dssp EEEEEEC-TTSCEEEEEEET-TCBHHHHHHHTT
T ss_pred EEEEEEC-CCCCEEEEEECC-CChHHHHHHHcC
Confidence 4555532 5777 778878 599999987744
Done!