RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2360
(136 letters)
>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase.
Length = 686
Score = 75.6 bits (186), Expect = 6e-17
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 15 VQKQNDIFNKEFKRQQNAVGRI--EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML 72
++K+ ++F K RQ + + I VT LP+ A K ++TP + A+ +S+ L
Sbjct: 26 IKKRIELFEKIQARQLARLESAGGDPIKVT---LPDGAVKDGKKWVTTPMDIAKEISKGL 82
Query: 73 CDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
+ +++A +DGV LWDM RPLE DC+L+L F D + TFW S + +LG L +
Sbjct: 83 ANSALIAQVDGV-LWDMTRPLEGDCKLKLFKFDDDE---GRDTFWHSSAHILGEALELEY 138
>gnl|CDD|133437 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRNA
Synthetase) is a class II tRNA synthetase that couples
threonine to its cognate tRNA. In addition to its
catalytic and anticodon-binding domains, ThrRS has an
N-terminal TGS domain, named after the ThrRS, GTPase,
and SpoT proteins where it occurs. The TGS domain is
thought to interact with the tRNA acceptor arm along
with an adjacent N-terminal domain. The specific
function of TGS is not well understood.
Length = 61
Score = 68.7 bits (169), Expect = 9e-17
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
I +T LP+ + K +TP + A+ +S L ++V A ++G +L D+ RPLE DCE
Sbjct: 1 IKIT---LPDGSVKEFPKG-TTPLDIAKSISPGLAKKAVAAKVNG-ELVDLSRPLEEDCE 55
Query: 99 LQLLHF 104
L+++ F
Sbjct: 56 LEIITF 61
>gnl|CDD|217243 pfam02824, TGS, TGS domain. The TGS domain is named after ThrRS,
GTPase, and SpoT. Interestingly, TGS domain was detected
also at the amino terminus of the uridine kinase from
the spirochaete Treponema pallidum (but not any other
organism, including the related spirochaete Borrelia
burgdorferi). TGS is a small domain that consists of ~50
amino acid residues and is predicted to possess a
predominantly beta-sheet structure. There is no direct
information on the functions of the TGS domain, but its
presence in two types of regulatory proteins (the
GTPases and guanosine polyphosphate
phosphohydrolases/synthetases) suggests a ligand (most
likely nucleotide)-binding, regulatory role.
Length = 60
Score = 40.5 bits (96), Expect = 7e-06
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLL 102
STP + A + L + + A ++G + + LE ++++
Sbjct: 17 STPEDFAYAIHTDLGKKFIGAKVNG-QRVGLDHVLEDGDVVEIV 59
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 38.1 bits (90), Expect = 5e-04
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
T + A +S L +V ++G +L D+ P+E D L+++ D +
Sbjct: 18 VTVADVAASISPGLAKAAVAGKVNG-ELVDLSTPIEEDASLEIITAKDEE---GLEIIRH 73
Query: 119 SCSIMLGSVLSNAFKDTH 136
S + +L + + D
Sbjct: 74 SAAHLLAQAVKRLYPDAK 91
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase.
Length = 298
Score = 27.2 bits (61), Expect = 2.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 111 HSNRTFWRSCSI 122
HSNR F+R C I
Sbjct: 134 HSNRQFYRDCDI 145
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase
inhibitor.
Length = 565
Score = 27.1 bits (60), Expect = 3.0
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 104 FYDSDPYHSNRTFWRSCSIMLGSV 127
F D+ H+ R F+R C+I G+V
Sbjct: 385 FQDTLYAHAQRQFYRECNI-YGTV 407
>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore
protein Cenp-F/LEK1. Cenp-F, a centromeric kinetochore,
microtubule-binding protein consisting of two
1,600-amino acid-long coils, is essential for the full
functioning of the mitotic checkpoint pathway. There are
several leucine-rich repeats along the sequence of LEK1
that are considered to be zippers, though they do not
appear to be binding DNA directly in this instance.
Length = 140
Score = 26.7 bits (59), Expect = 3.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 15 VQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAE 51
V+ + + K+ + +Q V +EK+N + + L E+ E
Sbjct: 78 VRSEKENLTKQLQEKQERVSELEKLNSSTENLLEEKE 114
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 27.3 bits (61), Expect = 3.4
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 3 CELGNRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPY 62
C + I+ + F++E++ ++E++ Y+ E A + L T
Sbjct: 257 CPFCQQTITEERKAELEAHFDEEYQELIE---QLEELIDKYESHIEKALEELESILDTEK 313
>gnl|CDD|188127 TIGR01284, alt_nitrog_alph, nitrogenase alpha chain. This model
represents the alpha chains of various forms of the
nitrogen-fixing enzyme nitrogenase: vanadium-iron,
iron-iron, and molybdenum-iron. Most examples of NifD,
the molybdenum-iron type nitrogenase alpha chain, are
excluded from this model and described instead by
equivalog model TIGR01282. It appears by phylogenetic
and UPGMA trees that this model represents a distinct
clade of NifD homologs, in which arose several
molybdenum-independent forms [Central intermediary
metabolism, Nitrogen fixation].
Length = 457
Score = 26.7 bits (59), Expect = 4.6
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 43 YKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLL 102
+ G+ E AE ++ + ++ E L + V G KLW RPLE + ++++
Sbjct: 294 FFGIEERAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLEDELGMEVV 353
Query: 103 HFY 105
Sbjct: 354 AVS 356
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase.
Length = 586
Score = 26.3 bits (58), Expect = 5.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 104 FYDSDPYHSNRTFWRSCSI 122
F D+ HSNR F+R C I
Sbjct: 405 FQDTLYAHSNRQFYRDCDI 423
>gnl|CDD|152703 pfam12268, DUF3612, Protein of unknown function (DUF3612). This
domain family is found in bacteria, and is approximately
180 amino acids in length. The family is found in
association with pfam01381.
Length = 178
Score = 25.5 bits (56), Expect = 7.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 24 KEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTP 61
K K ++V RI IN +G+ E+A LI ++ P
Sbjct: 131 KHIKTDLSSVARILNINWIERGIQEEARLICSRGAVCP 168
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional.
Length = 470
Score = 25.8 bits (57), Expect = 9.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 26 FKRQQNAVGRIEKINVTYKGLPED 49
F ++ VG E++ VTY+G D
Sbjct: 93 FTTDKSVVGNKERVAVTYEGFTAD 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.412
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,512,194
Number of extensions: 543843
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 19
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)