RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2360
(136 letters)
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, ligase; NMR {Homo sapiens}
Length = 88
Score = 59.1 bits (144), Expect = 8e-13
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 37 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 96
+ I VT LP+ ++ +TPY A +S+ L D +V+A ++ +WD+ RPLE D
Sbjct: 10 KPIKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNN-VVWDLDRPLEED 65
Query: 97 CELQLLHFYDSDPYHSNRTFWRSCS 121
C L+LL F D + + + S
Sbjct: 66 CTLELLKFEDEE---AQAVYSGPSS 87
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 41.0 bits (97), Expect = 4e-05
Identities = 19/100 (19%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 37 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 96
E+IN+ P+ + +K +T + AQ +S L ++V +G +L D+ +PLE+D
Sbjct: 2 EQINIQ---FPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGKFNG-QLVDLTKPLETD 56
Query: 97 CELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDTH 136
++++ + + S + ++ + + +
Sbjct: 57 GSIEIVTPGSEE---ALEVLRHSTAHLMAHAIKRLYGNVK 93
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 40.2 bits (95), Expect = 8e-05
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 59 STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
+P + A + L + ++G +L D +E+D +L ++ D +
Sbjct: 18 VSPMDVALDIGPGLAKACIAGRVNG-ELVDACDLIENDAQLSIITAKDEE---GLEIIRH 73
Query: 119 SCSIMLGSVLSNAFKDTH 136
SC+ +LG + + T
Sbjct: 74 SCAHLLGHAIKQLWPHTK 91
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 60 TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 119
+P + A + L + ++G +L D +E+D +L ++ D + S
Sbjct: 19 SPMDVALDIGPGLAKACIAGRVNG-ELVDACDLIENDAQLSIITAKDEEGLE---IIRHS 74
Query: 120 CSIMLGSVLSNAFKDTH 136
C+ +LG + + T
Sbjct: 75 CAHLLGHAIKQLWPHTK 91
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 28.8 bits (65), Expect = 0.52
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 31 NAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML 72
A G N + + + +++ NL + + A +++L
Sbjct: 93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLL 134
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 27.6 bits (62), Expect = 1.2
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 31 NAVGRIEKINVTYKGL-----PEDAELIMNKNLSTPYNCAQH 67
NA ++ I T + I N L Y C+ +
Sbjct: 90 NAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVY 131
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 27.5 bits (62), Expect = 1.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 32 AVGRIEKINVTYKGLPEDAE 51
+G EKI+VTY L +D
Sbjct: 98 VLGTPEKISVTYPSLIDDVS 117
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 27.5 bits (62), Expect = 1.4
Identities = 4/19 (21%), Positives = 4/19 (21%)
Query: 33 VGRIEKINVTYKGLPEDAE 51
I V K E
Sbjct: 109 KSDGTYIPVPNKAFFSAVE 127
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 27.5 bits (62), Expect = 1.4
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 47 PEDAELIMNKNLSTPYNCAQHMSEML 72
++ + + ++ PY H +L
Sbjct: 119 ADNFTRMFSVHMLAPYLINLHCEPLL 144
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 27.5 bits (62), Expect = 1.5
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 21/58 (36%)
Query: 4 ELGNRQISSNIVQ------------KQNDIFNKEFKRQQNAVGRIEKINVTYKGLPED 49
+LG R I+ N + + + + +A R+ G ED
Sbjct: 178 QLGARGITVNAILPGFVKTDMNAELLSDPMMKQYAT-TISAFNRL--------GEVED 226
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 26.8 bits (60), Expect = 1.8
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGV 84
PE + ++ L N + L D+ L G+
Sbjct: 79 PEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGI 116
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 27.2 bits (61), Expect = 2.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 32 AVGRIEKINVTYKGLPEDAE 51
G EK +VTY+ L D +
Sbjct: 118 VEGTPEKFSVTYENLINDVQ 137
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 26.8 bits (60), Expect = 2.7
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 33 VGRIEKINVTYKGLPEDAE 51
+G I +Y LP+ +
Sbjct: 135 IGDETTIACSYGALPQSVK 153
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 26.8 bits (60), Expect = 2.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 33 VGRIEKINVTYKGLPEDAE 51
+G I +YK LP+ +
Sbjct: 144 LGDETCIACSYKKLPQSVK 162
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 26.7 bits (60), Expect = 3.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 33 VGRIEKINVTYKGLPEDAE 51
+G E + VTY+G D
Sbjct: 100 IGNSEMVAVTYEGFTTDLS 118
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 26.5 bits (59), Expect = 3.6
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 33 VGRIEKINVTYKGLPEDAE 51
+G E I+ +Y LP+ +
Sbjct: 151 LGNSECISCSYSLLPKSVQ 169
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger,
transferase, viral protein; HET: SAM; 2.00A {Sars
coronavirus}
Length = 344
Score = 26.3 bits (57), Expect = 3.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 106 DSDPYHSNRTFWRSCSIMLGSVLS 129
D H+N FWR+ + + S S
Sbjct: 266 DGYTMHANYIFWRNTNPIQLSSYS 289
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 26.4 bits (59), Expect = 3.9
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 37 EKINVTYKGLPEDAE 51
+K + Y+ L +
Sbjct: 123 DKFYIDYQNLSKVVR 137
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein
complex, rossman fold; HET: SAH; 2.00A {Sars
coronavirus} PDB: 2xyv_A* 2xyr_A*
Length = 290
Score = 26.2 bits (57), Expect = 4.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 106 DSDPYHSNRTFWRSCSIMLGSVLS 129
D H+N FWR+ + + S S
Sbjct: 220 DGYTMHANYIFWRNTNPIQLSSYS 243
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding,
T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP:
b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Length = 573
Score = 25.7 bits (56), Expect = 6.6
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVL 78
PE A+L+++ + + + + +L + L
Sbjct: 539 PEKADLVVDFSKQSVRSIVHEIILVLESQGFL 570
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 25.7 bits (57), Expect = 6.9
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 37 EKINVTYKGLPEDAE 51
+ + V YK + +
Sbjct: 124 KIMYVDYKNITKVIS 138
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A
1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A*
1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A*
2vgg_A* ...
Length = 550
Score = 25.4 bits (56), Expect = 6.9
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 37 EKINVTYKGLPEDAE 51
+ + YK + + E
Sbjct: 174 NILWLDYKNICKVVE 188
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular
chaperone, actin-like ATPase domain, beta/BETA/alpha
swiveling domain, hydrolase; 2.40A {Klebsiella
pneumoniae} SCOP: c.51.3.2
Length = 117
Score = 24.8 bits (54), Expect = 7.7
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 32 AVGRIEKINVTYKGLPEDAELIMNKNLSTPYNC 64
+ +I +T+ LP DA L +
Sbjct: 65 GLSASGEIALTHAQLPADAPLATGHVTDSDDQL 97
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP;
2.31A {Aquifex aeolicus}
Length = 546
Score = 25.3 bits (55), Expect = 8.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVL 78
P E+ ++ TP A + E L +
Sbjct: 513 PVAPEVRVDTTKLTPEESALKILEFLKKEGFI 544
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.1 bits (54), Expect = 9.0
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 7 NRQISSNIVQKQNDIFNKEFKRQQNA 32
+ Q+ N + N I +K F +Q +A
Sbjct: 128 SEQVEKN--KINNRIADKAFYQQPDA 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 9.5
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 29/93 (31%)
Query: 37 EKINVTYKGL--------PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDG----V 84
++ L D +++NK L S L +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNK---------------LHKYS-LVEKQPKESTI 426
Query: 85 KLWDMHRPLESDCE-LQLLHFYDSDPYHSNRTF 116
+ ++ L+ E LH D Y+ +TF
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.412
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,969,028
Number of extensions: 99609
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 31
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)