RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2360
         (136 letters)



>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS),
           N-terminal 'additional' domain {Staphylococcus aureus
           [TaxId: 1280]}
          Length = 59

 Score = 41.2 bits (97), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 39  INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
           IN+     P+  +   +K  +T  + AQ +S  L  ++V    +G +L D+ +PLE+D  
Sbjct: 1   INIQ---FPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGKFNG-QLVDLTKPLETDGS 55

Query: 99  LQLL 102
           ++++
Sbjct: 56  IEIV 59


>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS),
           N-terminal 'additional' domain {Escherichia coli [TaxId:
           562]}
          Length = 62

 Score = 36.6 bits (85), Expect = 5e-05
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 39  INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
             +T   LP+ ++   +    +P + A  +   L    +   ++G +L D    +E+D +
Sbjct: 2   PVIT---LPDGSQRHYDHA-VSPMDVALDIGPGLAKACIAGRVNG-ELVDACDLIENDAQ 56

Query: 99  LQLL 102
           L ++
Sbjct: 57  LSII 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 491,548
Number of extensions: 20066
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 6
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.8 bits)