BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2363
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O01377|PCNA_BOMMO Proliferating cell nuclear antigen OS=Bombyx mori GN=PCNA PE=2 SV=1
Length = 260
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 107/156 (68%), Gaps = 34/156 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARICRDL+QFGES+ ISCTKEGVKFSATGDIGSAN+KLAQT ++DKEEE
Sbjct: 139 MPSSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKEEE----- 193
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
AV +EM+EPV+L FAC+YL F KA LS Q
Sbjct: 194 -----------------------------AVVIEMEEPVTLTFACQYLNYFTKATSLSPQ 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDDN 156
V LSMS DVPLVVE++I DIGHIRYYLAPKIE +D+
Sbjct: 225 VQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEEDS 260
>sp|P17917|PCNA_DROME Proliferating cell nuclear antigen OS=Drosophila melanogaster
GN=mus209 PE=1 SV=2
Length = 260
Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 104/155 (67%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MP+ EFARICRDLAQF ES+ I CTKEGVKFSA+GD+G+ANIKLAQTG+VDKEEEAV +E
Sbjct: 139 MPAMEFARICRDLAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAVIIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
MQEPV+L FACRYL F KA P LS Q
Sbjct: 199 MQEPVTLTFACRYLNAFTKATP----------------------------------LSTQ 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V LSM DVPLVVE+ I D+GHIRYYLAPKIE ++
Sbjct: 225 VQLSMCADVPLVVEYAIKDLGHIRYYLAPKIEDNE 259
>sp|O16852|PCNA_SARCR Proliferating cell nuclear antigen OS=Sarcophaga crassipalpis
GN=PCNA PE=3 SV=1
Length = 260
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/156 (58%), Positives = 104/156 (66%), Gaps = 34/156 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARICRDLAQF ES+ I CTKEGVKFSA+GD+GSAN+KLAQT +VDKEEEAV +E
Sbjct: 139 MPSMEFARICRDLAQFSESMLICCTKEGVKFSASGDVGSANVKLAQTSSVDKEEEAVIIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
MQEPV+L FACRYL F KA P LS Q
Sbjct: 199 MQEPVTLTFACRYLNAFTKATP----------------------------------LSAQ 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDDN 156
V LSM DVPLVVE+ I ++GHIRYYLAPKIE D++
Sbjct: 225 VQLSMCADVPLVVEYAIKELGHIRYYLAPKIEDDES 260
>sp|P61258|PCNA_MACFA Proliferating cell nuclear antigen OS=Macaca fascicularis GN=PCNA
PE=2 SV=1
Length = 261
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 102/155 (65%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+ G+++ ISC K+GVKFSA+G++G+ NIKL+QT NVDKEEEAVT+E
Sbjct: 139 MPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA RYL F KA P LS+
Sbjct: 199 MNEPVQLTFALRYLNFFTKATP----------------------------------LSST 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V LSMS DVPLVVE+KI D+GH++YYLAPKIE ++
Sbjct: 225 VTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259
>sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1
SV=1
Length = 261
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 102/155 (65%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+ G+++ ISC K+GVKFSA+G++G+ NIKL+QT NVDKEEEAVT+E
Sbjct: 139 MPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA RYL F KA P LS+
Sbjct: 199 MNEPVQLTFALRYLNFFTKATP----------------------------------LSST 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V LSMS DVPLVVE+KI D+GH++YYLAPKIE ++
Sbjct: 225 VTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259
>sp|P57761|PCNA_CRIGR Proliferating cell nuclear antigen OS=Cricetulus griseus GN=PCNA
PE=1 SV=1
Length = 261
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 102/155 (65%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+ G+++ ISC K+GVKFSA+G++G+ NIKL+QT NVDKEEEAVT+E
Sbjct: 139 MPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA RYL F KA PLS P
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLS-------------PT--------------------- 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V LSMS DVPLVVE+KI D+GH++YYLAPKIE ++
Sbjct: 225 VTLSMSTDVPLVVEYKISDMGHLKYYLAPKIEDEE 259
>sp|P17918|PCNA_MOUSE Proliferating cell nuclear antigen OS=Mus musculus GN=Pcna PE=1
SV=2
Length = 261
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 101/155 (65%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+ G+++ ISC K GVKFSA+G++G+ NIKL+QT NVDKEEEAVT+E
Sbjct: 139 MPSGEFARICRDLSHIGDAVVISCAKNGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA RYL F KA PLS P
Sbjct: 199 MNEPVHLTFALRYLNFFTKATPLS-------------PT--------------------- 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V LSMS DVPLVVE+KI D+GH++YYLAPKIE ++
Sbjct: 225 VTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259
>sp|P18248|PCNA_XENLA Proliferating cell nuclear antigen OS=Xenopus laevis GN=pcna PE=2
SV=1
Length = 261
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 102/155 (65%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+Q G+++ ISC K+GVKFSA+G++G+ N+KL+QT NVDKEEEAVT+E
Sbjct: 139 MPSGEFARICRDLSQIGDAVVISCAKDGVKFSASGELGTGNVKLSQTSNVDKEEEAVTIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA RYL F KA PLS P
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLS-------------PT--------------------- 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V LSMS D+PLVVE+KI D+ H++YYLAPKIE ++
Sbjct: 225 VILSMSADIPLVVEYKIADMEHVKYYLAPKIEDEE 259
>sp|P04961|PCNA_RAT Proliferating cell nuclear antigen OS=Rattus norvegicus GN=Pcna
PE=1 SV=1
Length = 261
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 102/155 (65%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+ G+++ ISC K+GVKFSA+G++G+ NIKL+QT NVDKEEEAV++E
Sbjct: 139 MPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVSIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA RYL F KA PLS P
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLS-------------PT--------------------- 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V LSMS DVPLVVE+KI D+GH++YYLAPKIE ++
Sbjct: 225 VTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259
>sp|Q3ZBW4|PCNA_BOVIN Proliferating cell nuclear antigen OS=Bos taurus GN=PCNA PE=2 SV=1
Length = 261
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 101/155 (65%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+ G+++ ISC K+GVKFSA+G++G+ NIKL+QT NVDKEEEAV +E
Sbjct: 139 MPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVAIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA RYL F KA PLS P
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLS-------------PT--------------------- 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V LSMS DVPLVVE+KI D+GH++YYLAPKIE ++
Sbjct: 225 VTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259
>sp|Q6B6N4|PCNA_HAPBU Proliferating cell nuclear antigen OS=Haplochromis burtoni GN=pcna
PE=2 SV=1
Length = 260
Score = 162 bits (411), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 99/152 (65%), Gaps = 34/152 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+Q G+++ ISC K+GVKFSA+G++G+ NIKL+QT NVDKE+EAVT+E
Sbjct: 139 MPSGEFARICRDLSQIGDAVMISCAKDGVKFSASGELGTGNIKLSQTSNVDKEDEAVTIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA YL F KA PLS
Sbjct: 199 MNEPVQLIFALNYLNFFTKA----------------------------------TPLSKT 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152
V LSMS D+PLVVE+KI D+GHI+YYLAPKI+
Sbjct: 225 VTLSMSADIPLVVEYKIADMGHIKYYLAPKID 256
>sp|Q9PTP1|PCNA_DANRE Proliferating cell nuclear antigen OS=Danio rerio GN=pcna PE=1 SV=2
Length = 260
Score = 162 bits (410), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 99/152 (65%), Gaps = 34/152 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+Q G+++ ISC K+GVKFSA+G++G+ NIKL+QT NVDKE+EAVT+E
Sbjct: 139 MPSGEFARICRDLSQIGDAVMISCAKDGVKFSASGELGTGNIKLSQTSNVDKEDEAVTIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA YL F KA PLS
Sbjct: 199 MNEPVQLIFALNYLNFFTKA----------------------------------TPLSKT 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152
V LSMS D+PLVVE+KI D+GH++YYLAPKI+
Sbjct: 225 VTLSMSADIPLVVEYKIADMGHVKYYLAPKID 256
>sp|Q9DEA3|PCNA_CHICK Proliferating cell nuclear antigen OS=Gallus gallus GN=PCNA PE=1
SV=1
Length = 262
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 98/152 (64%), Gaps = 34/152 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARICRDL+ G+++ ISC K+GVKFSA G++G+ NIKL+QT NVDKEEEAVT+E
Sbjct: 139 MPSAEFARICRDLSHIGDAVVISCAKDGVKFSANGELGNGNIKLSQTSNVDKEEEAVTIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA RYL F KA PLS P
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLS-------------PT--------------------- 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152
V LSMS DVPLVVE+KI D+GH++YYLAPKIE
Sbjct: 225 VTLSMSADVPLVVEYKIADMGHLKYYLAPKIE 256
>sp|Q9DDF1|PCNA_COTJA Proliferating cell nuclear antigen OS=Coturnix coturnix japonica
GN=PCNA PE=2 SV=1
Length = 262
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 97/152 (63%), Gaps = 34/152 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARICRDL+ G+++ ISC K+GVKFSA G++G+ NIKL+QT NVDKEEEAVT+E
Sbjct: 139 MPSAEFARICRDLSHIGDAVVISCAKDGVKFSANGELGNGNIKLSQTSNVDKEEEAVTIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPV L FA RYL F KA PLS P
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLS-------------PT--------------------- 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152
V LSMS DVPLVVE+KI D+GH +YYLAPKIE
Sbjct: 225 VTLSMSADVPLVVEYKIADMGHXKYYLAPKIE 256
>sp|Q9W644|PCNA_ANGJA Proliferating cell nuclear antigen OS=Anguilla japonica GN=pcna
PE=2 SV=1
Length = 260
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 98/152 (64%), Gaps = 34/152 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+Q G+++ ISC K+GV FSA+G++G+ N+KL+QT NVD
Sbjct: 139 MPSGEFARICRDLSQIGDAVMISCAKDGVMFSASGELGTGNVKLSQTSNVD--------- 189
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
+E++AVT+EM EPV L FA YL F KA PLS
Sbjct: 190 -------------------------EEDDAVTIEMNEPVQLIFALNYLNFFTKATPLSKT 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152
V LSMS D+PLVVE+KI D+GH++YYLAPKI+
Sbjct: 225 VTLSMSADIPLVVEYKIADMGHVKYYLAPKID 256
>sp|Q9MAY3|PCNA_POPNI Proliferating cell nuclear antigen OS=Populus nigra GN=PCNA PE=2
SV=1
Length = 264
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 95/155 (61%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARIC+DLA G+++ IS TKEGVKFS GDIG+ANI L Q VDK E+A +E
Sbjct: 139 MPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEDATVIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPVS+ FA RY+ +F KA P LSN
Sbjct: 199 MNEPVSMTFALRYMNSFTKATP----------------------------------LSNT 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V +SMS D+P+VVE+KI ++G++R+YLAPK+E D+
Sbjct: 225 VTISMSPDLPVVVEYKIAEMGYVRFYLAPKMEEDE 259
>sp|P53358|PCNA_STYCL Proliferating cell nuclear antigen OS=Styela clava GN=PCNA PE=2
SV=1
Length = 264
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 98/156 (62%), Gaps = 35/156 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQ-TGNVDKEEEAVTV 59
+PS EF RICRDL+Q GE + I+CTK+GV+FSA GD+G+ IKL Q TG+ KEEE VTV
Sbjct: 139 LPSQEFGRICRDLSQIGECVVITCTKDGVQFSAKGDLGAGKIKLKQNTGSDIKEEEQVTV 198
Query: 60 EMQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSN 119
E+ EPV L FA +YL FAKA +PLS
Sbjct: 199 EISEPVQLTFAIKYLNLFAKA----------------------------------SPLSP 224
Query: 120 QVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
VCLSMS +VPLVVE+K+ D+GHI+Y+LAPKIE ++
Sbjct: 225 SVCLSMSNNVPLVVEYKVADMGHIKYFLAPKIEDEE 260
>sp|Q9ZW35|PCNA2_ARATH Proliferating cell nuclear antigen 2 OS=Arabidopsis thaliana
GN=At2g29570 PE=1 SV=1
Length = 264
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 100/156 (64%), Gaps = 34/156 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEF+RIC+DL+ G+++ IS TKEGVKFS GDIG+ANI L Q VDK E+A+ +E
Sbjct: 139 MPSGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPVSL+FA RY+ +F KA PLS E VT+
Sbjct: 199 MNEPVSLSFALRYMNSFTKATPLS----ETVTI--------------------------- 227
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDDN 156
S+S ++P+VVE+K+ ++G+IRYYLAPKIE +++
Sbjct: 228 ---SLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED 260
>sp|P24314|PCNA_CATRO Proliferating cell nuclear antigen OS=Catharanthus roseus PE=2 SV=1
Length = 268
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 94/155 (60%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARIC+DL+ G+++ IS TKEGVKFS GDIG+ANI Q VDK +EA +E
Sbjct: 139 MPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPDEATIIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPVSL FA RYL +F KA PLSN
Sbjct: 199 ----------------------------------MNEPVSLTFALRYLNSFTKATPLSNN 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V +S+S ++P+VVE+KI ++G+IR+YLAPKIE DD
Sbjct: 225 VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDD 259
>sp|Q00265|PCNA2_DAUCA Proliferating cell nuclear antigen large form OS=Daucus carota PE=2
SV=1
Length = 365
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 96/155 (61%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARIC+DL+ G+++ IS TKEGVKFS GDIG+ANI Q +VDK E+A +E
Sbjct: 139 MPSAEFARICKDLSTIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTSVDKPEDATIIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
MQE VSL FA RY+ +F KA PL+NQ
Sbjct: 199 ----------------------------------MQETVSLTFALRYMNSFTKATPLANQ 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V +S+S ++P+VVE+KI ++G+IRYYLAPKIE +D
Sbjct: 225 VTISLSSELPVVVEYKIAEMGYIRYYLAPKIEEED 259
>sp|Q43124|PCNA_BRANA Proliferating cell nuclear antigen OS=Brassica napus PE=2 SV=1
Length = 263
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EF+RIC+DL+ G+++ IS TKEGVKFS GDIG+ANI L Q VDK E+A+ +E
Sbjct: 139 MPSNEFSRICKDLSTIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M EPVSL+FA RY+ +F KA PLS+
Sbjct: 199 MNEPVSLSFALRYMNSFTKA----------------------------------TPLSDT 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V +S+S ++P+VVE+K+ ++G+IRYYLAPKIE D+
Sbjct: 225 VTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEDE 259
>sp|Q9M7Q7|PCNA1_ARATH Proliferating cellular nuclear antigen 1 OS=Arabidopsis thaliana
GN=PCNA PE=1 SV=2
Length = 263
Score = 142 bits (358), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 34/156 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EF+RIC+DL+ G+++ IS TKEGVKFS GDIG+ANI L Q VDK E+A+ +E
Sbjct: 139 MPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M+EPVSL+FA RY+ +F KA PLS+
Sbjct: 199 MKEPVSLSFALRYMNSFTKA----------------------------------TPLSDT 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDDN 156
V +S+S ++P+VVE+K+ ++G+IRYYLAPKIE +++
Sbjct: 225 VTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED 260
>sp|O82797|PCNA_TOBAC Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA
PE=2 SV=1
Length = 264
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 94/155 (60%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EF+RIC+DL+ G+++ IS TKEGVKFS GDIG+ANI Q VDK EEA +
Sbjct: 139 MPSAEFSRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVI- 197
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
EM EPVSL FA RYL +F KA PLSN
Sbjct: 198 ---------------------------------EMNEPVSLTFALRYLNSFTKATPLSNT 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V +S+S ++P+VVE+KI ++G+IR+YLAPKIE D+
Sbjct: 225 VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 259
>sp|P17070|PCNA_ORYSJ Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica
GN=Os02g0805200 PE=2 SV=2
Length = 263
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 96/155 (61%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EF+RIC+DL+ G+++ IS TKEGVKFS GDIG+ANI Q VDK E+A +E
Sbjct: 139 MPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANIVCRQNKTVDKPEDATIIE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
MQEPVSL FA RY+ +F KA+PLS Q
Sbjct: 199 ----------------------------------MQEPVSLTFALRYMNSFTKASPLSEQ 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V +S+S ++P+VVE+KI ++G+IR+YLAPKIE D+
Sbjct: 225 VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 259
>sp|P22177|PCNA_SOYBN Proliferating cell nuclear antigen (Fragment) OS=Glycine max PE=2
SV=1
Length = 236
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARIC+DL+ G+++ IS TKEGVKFS GDIG+ANI Q +VDK EEA +
Sbjct: 109 MPSSEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTSVDKPEEATVI- 167
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
EM EPVSL FA RY+ +F KA PLSN
Sbjct: 168 ---------------------------------EMNEPVSLTFALRYMNSFTKATPLSNT 194
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V +S+S ++P+VVE+KI ++G++R+YLAPKIE D+
Sbjct: 195 VTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDE 229
>sp|Q00268|PCNA1_DAUCA Proliferating cell nuclear antigen OS=Daucus carota PE=3 SV=1
Length = 264
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 96/156 (61%), Gaps = 34/156 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARIC+DL+ G+++ IS TKEGVKFS GDIG+ANI Q VDK EEA +
Sbjct: 139 MPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTTVDKPEEATVI- 197
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
EM EPVSL FA RY+ +F KA+PLS+
Sbjct: 198 ---------------------------------EMNEPVSLTFALRYMNSFTKASPLSST 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDDN 156
V +S+S ++P+VVE+KI ++G+IR+YLAPKIE +++
Sbjct: 225 VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEEED 260
>sp|Q43266|PCNA_MAIZE Proliferating cell nuclear antigen OS=Zea mays GN=PCNA PE=2 SV=1
Length = 263
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 95/155 (61%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EF RIC+DL+ G+++ IS TKEGVKFS +G+IGSANI Q +DK EEA +
Sbjct: 139 MPSSEFMRICKDLSSIGDTVVISVTKEGVKFSTSGEIGSANIVCRQNQTIDKPEEATII- 197
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
EMQEPVSL FA RY+ +F KA+ LS Q
Sbjct: 198 ---------------------------------EMQEPVSLTFALRYMNSFTKASSLSEQ 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V +S+S ++P+VVE+KI ++G+IR+YLAPKIE D+
Sbjct: 225 VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEDDE 259
>sp|O82134|PCNA_PEA Proliferating cell nuclear antigen OS=Pisum sativum GN=PCNA PE=2
SV=1
Length = 266
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 94/155 (60%), Gaps = 34/155 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPS EFARIC+DL+ G+++ I+ +KEGVKFS GDIGSANI Q VDK EEA +
Sbjct: 139 MPSAEFARICKDLSSIGDTVVIAVSKEGVKFSTKGDIGSANIVCRQNTTVDKPEEATVI- 197
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
EM EPV+L FA RY+ +F KA PLS+
Sbjct: 198 ---------------------------------EMNEPVALQFALRYMNSFTKATPLSSS 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V +S+S ++P+VVE+KI ++G++R+YLAPKIE D+
Sbjct: 225 VTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDE 259
>sp|Q54K47|PCNA_DICDI Proliferating cell nuclear antigen OS=Dictyostelium discoideum
GN=pcna PE=3 SV=1
Length = 258
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 86/153 (56%), Gaps = 35/153 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVD-KEEEAVTV 59
MPS E RICRDL+ GE + IS KEGVKFS +GD GS NI + T + D E+A +
Sbjct: 140 MPSAELQRICRDLSIIGEIVTISANKEGVKFSVSGDSGSGNITIKPTSDSDVPAEQATVI 199
Query: 60 EMQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSN 119
E +EPV LNFA ++L NF KA PLS P+
Sbjct: 200 ESKEPVVLNFALKFLSNFTKATPLS-------------------------------PM-- 226
Query: 120 QVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152
V LSMS +P+VVE+KIDD+G + ++LAPKIE
Sbjct: 227 -VTLSMSEGIPVVVEYKIDDLGFLGFFLAPKIE 258
>sp|O02115|PCNA_CAEEL Proliferating cell nuclear antigen OS=Caenorhabditis elegans
GN=pcn-1 PE=1 SV=3
Length = 263
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 34/156 (21%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MP+GEF + C+DL+ F +S+NI+ TK G+ F+ GDIGS+ + + + N D E EAVT+E
Sbjct: 140 MPAGEFQKTCKDLSTFSDSLNITATKAGIVFTGKGDIGSSVVTYSPSSNTDDETEAVTLE 199
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
+++PV++NF+ +Y+ F K A LS++
Sbjct: 200 VKDPVNVNFSIKYMNQFTK----------------------------------ATALSDR 225
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDDN 156
V LS+ DVP+VVE+ I++ G++R+YLAPKI+ D+N
Sbjct: 226 VRLSLCNDVPVVVEYPIEENGYLRFYLAPKIDDDEN 261
>sp|Q03392|PCNA_SCHPO Proliferating cell nuclear antigen OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pcn1 PE=1 SV=1
Length = 260
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 35/155 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MP+ EF RI RDL +S+ I+ +KEGV+FS GDIG+ + L Q ++ +++++ +
Sbjct: 139 MPAAEFQRITRDLLTLSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSIEIS 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
+ + V+L F+ +YL F KA PL+ +
Sbjct: 199 LTQAVTLTFSLKYLAQFTKA----------------------------------TPLATR 224
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V LSMS DVPL+VE+K++ G +R+YLAPKI +D
Sbjct: 225 VTLSMSNDVPLLVEYKMES-GFLRFYLAPKIGEED 258
>sp|P15873|PCNA_YEAST Proliferating cell nuclear antigen OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL30 PE=1 SV=1
Length = 258
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 58/86 (67%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
+PS EF++I RDL+Q +SINI TKE +KF A GDIGS ++ + +++ E ++ +E
Sbjct: 139 LPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLE 198
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQ 86
M +PV L F +YLL+ K + LS++
Sbjct: 199 MDQPVDLTFGAKYLLDIIKGSSLSDR 224
>sp|P11038|PCNA_NPVAC Probable DNA polymerase sliding clamp OS=Autographa californica
nuclear polyhedrosis virus GN=PCNA PE=2 SV=1
Length = 256
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 39/155 (25%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
M S EFA++C+D+ QF I +SC+K+G++F A GDIGSA+++++ D E +V ++
Sbjct: 137 MSSVEFAQVCKDMTQFDHDIIVSCSKKGLQFRANGDIGSADVQMS----ADNENFSV-LK 191
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
++ V+ FA YL +FAKAAPL AP
Sbjct: 192 AKQTVTHTFAGDYLCHFAKAAPL-------------------------------AP---T 217
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
V + MS ++P +E+ I D+G + +LAPKI ++D
Sbjct: 218 VTIYMSEELPFKLEYCIKDVGVLACFLAPKIVNND 252
>sp|O10308|PCNA_NPVOP Probable DNA polymerase sliding clamp OS=Orgyia pseudotsugata
multicapsid polyhedrosis virus GN=PCNA PE=3 SV=1
Length = 249
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 47/154 (30%)
Query: 1 MPSGEFARICRDLAQFG-ESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTV 59
+PS E R C DLA+ G ++ +S G+ F+A D G
Sbjct: 136 VPSAELTRACADLARLGATTVEMSSGTTGLSFAAHADDG--------------------- 174
Query: 60 EMQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSN 119
R LL + +P Q P++ FAC YL A+A+ LS
Sbjct: 175 ---------VRVRVLL---RGSP-------------QRPLTQAFACCYLNKLARASALSE 209
Query: 120 QVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIES 153
V + M +PL + F++ +G + YLAP++ S
Sbjct: 210 TVDVCMDASMPLRLRFRLGPLGALDLYLAPRVPS 243
>sp|O41056|PCNA2_PBCV1 Probable DNA polymerase sliding clamp 2 OS=Paramecium bursaria
Chlorella virus 1 GN=A574L PE=3 SV=1
Length = 264
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 93 VEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKID--DIGHIRYYLAPK 150
VE++ ++ FA RYL+ FAKAA +S +V + + D P + E+ D I ++LAPK
Sbjct: 195 VEIKGRLTCEFATRYLMTFAKAAGISKRVVIKLLDDQPGIFEYVFDAESDSKISFFLAPK 254
Query: 151 IESD 154
++ D
Sbjct: 255 VKDD 258
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 8 RICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSL 67
+ +++A FG+++ I + V G+IG ++++ VE++ ++
Sbjct: 154 KYLKNMAGFGDTVKIYTQDDVVHMKTAGEIGEVDLQIHDQ----------RVEIKGRLTC 203
Query: 68 NFACRYLLNFAKAAPLSNQ 86
FA RYL+ FAKAA +S +
Sbjct: 204 EFATRYLMTFAKAAGISKR 222
>sp|Q8TUF7|PCNA_METAC DNA polymerase sliding clamp OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=pcn PE=3
SV=1
Length = 245
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 83 LSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIG 141
L ++ + ++ E SL F+ YL + K N+V LS+ D P++++F+I + G
Sbjct: 174 LEMGRDQLIDLKAGEACSL-FSLDYLTDIVKPTNKVNEVTLSLGRDFPILIDFEIANGAG 232
Query: 142 HIRYYLAPKIESD 154
I Y LAP+IESD
Sbjct: 233 RISYLLAPRIESD 245
>sp|Q8PX25|PCNA_METMA DNA polymerase sliding clamp OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=pcn PE=3 SV=1
Length = 245
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 83 LSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIG 141
L ++ + ++ E SL F+ YL + K N+V LS+ D P++++F+I + G
Sbjct: 174 LEMGRDQLIDLKAGEACSL-FSLDYLTDIVKPTNKVNEVTLSLGRDFPILIDFEIANGAG 232
Query: 142 HIRYYLAPKIESD 154
I Y LAP+IESD
Sbjct: 233 RISYLLAPRIESD 245
>sp|Q74MV1|PCNA_NANEQ DNA polymerase sliding clamp OS=Nanoarchaeum equitans (strain
Kin4-M) GN=pcn PE=3 SV=2
Length = 249
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 83 LSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGH 142
L+ E+ V++++QE +++ YL FAKAA +S+ L + D PL +E++ D
Sbjct: 180 LTEGEDAVVSIDIQEEAYASYSIDYLKKFAKAADVSDIAILKLKTDYPLWLEYRYLDKMT 239
Query: 143 IRYYLAPK 150
+ + LAP+
Sbjct: 240 LIFILAPR 247
>sp|Q46E39|PCNA_METBF DNA polymerase sliding clamp OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=pcn PE=3 SV=1
Length = 245
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 103 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 154
F+ YL + K N+V LS+ D P++++F+I + G I Y LAP+IESD
Sbjct: 193 FSLDYLTDIVKPTNKVNEVTLSLGKDFPILIDFEIANGSGRISYLLAPRIESD 245
>sp|Q5JF32|PCNA1_PYRKO DNA polymerase sliding clamp 1 OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=pcn1 PE=1 SV=1
Length = 249
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 83 LSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGH 142
L+ ++E + +E++E + RYL + K +++V L ++PL +E+ I D G
Sbjct: 179 LTLEDEGLLDLEVEEETKSAYGIRYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGR 238
Query: 143 IRYYLAPKIE 152
+ + LAP++E
Sbjct: 239 LTFLLAPRVE 248
>sp|P31008|PCNA_PLAFK Proliferating cell nuclear antigen OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=PCNA PE=3 SV=1
Length = 274
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 43/158 (27%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
+ S E I R+L++F +++ I +KF+ G +G A + L
Sbjct: 141 LSSKELTNIFRNLSEFSDTVFIEIDSNCIKFTTKGIVGDAEVAL---------------- 184
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
K +++++ VT++ ++ + +FA +YL F+K+ L++
Sbjct: 185 ------------------KPRDSTSEDDIGVTIKSKKKIKQSFAIKYLNLFSKSNILADV 226
Query: 121 VCLSMSLDVPLVVEFKIDD---------IGHIRYYLAP 149
V L +S P+ +++I D IG ++++LAP
Sbjct: 227 VVLGLSDSRPIEFKYEIKDTSPDSDTLKIGFVKFFLAP 264
>sp|P61074|PCNA_PLAF7 Proliferating cell nuclear antigen OS=Plasmodium falciparum
(isolate 3D7) GN=PCNA PE=3 SV=1
Length = 274
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 43/158 (27%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
+ S E I R+L++F +++ I +KF+ G +G A + L
Sbjct: 141 LSSKELTNIFRNLSEFSDTVFIEIDSNCIKFTTKGIVGDAEVAL---------------- 184
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
K +++++ VT++ ++ + +FA +YL F+K+ L++
Sbjct: 185 ------------------KPRDSTSEDDIGVTIKSKKKIKQSFAIKYLNLFSKSNILADV 226
Query: 121 VCLSMSLDVPLVVEFKIDD---------IGHIRYYLAP 149
V L +S P+ +++I D IG ++++LAP
Sbjct: 227 VVLGLSDSRPIEFKYEIKDTSPDSDTLKIGFVKFFLAP 264
>sp|Q12U18|PCNA_METBU DNA polymerase sliding clamp OS=Methanococcoides burtonii (strain
DSM 6242) GN=pcn PE=3 SV=1
Length = 245
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 103 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 154
F+ YL + K A SN++ L + D P+ + F I + G I Y LAP+IESD
Sbjct: 193 FSLDYLSDIIKPASKSNEISLHLGNDFPIKINFSIANGKGTIGYLLAPRIESD 245
>sp|B8GG80|PCNA_METPE DNA polymerase sliding clamp OS=Methanosphaerula palustris (strain
ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pcn PE=3 SV=1
Length = 247
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 103 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 154
F+ YL + K + +V +S+ +D P+ F I D GH+ Y LAP+IE+D
Sbjct: 195 FSLDYLKDMGKTMSKAEKVEISLGIDHPVEFTFDIADGKGHVMYLLAPRIEAD 247
>sp|Q84513|PCNA1_PBCV1 Probable DNA polymerase sliding clamp 1 OS=Paramecium bursaria
Chlorella virus 1 GN=A193L PE=3 SV=1
Length = 262
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 37/150 (24%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MP+ F RICRD++ D + V V+
Sbjct: 146 MPANYFQRICRDMS------------------------------------DITDHLVIVK 169
Query: 61 MQEPVSLNFACRYLLNFA-KAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSN 119
+ VS N + +FA + + + + +T F+ +YL +F KA+ +S+
Sbjct: 170 KGDEVSFNSDYTCVTDFASQKTIIGDSDNGQITCNNDTDYESKFSLKYLTSFCKASGMSS 229
Query: 120 QVCLSMSLDVPLVVEFKIDDIGHIRYYLAP 149
V + + PL++++ + +G +++ +AP
Sbjct: 230 AVEIYLKESYPLILKYTVGSMGALKFVIAP 259
>sp|Q8ZTY0|PCNA1_PYRAE DNA polymerase sliding clamp A OS=Pyrobaculum aerophilum (strain
ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=pcnA PE=3 SV=1
Length = 249
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 94 EMQEPVSLNFACRYLLNF-AKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152
+++EP S F+ YL++ +K + +S+ V + ++ P+ + F I G I Y++AP++E
Sbjct: 190 DVKEPASARFSLEYLVDITSKTSKISDIVTIELATAKPIYLSFDIPAGGKISYFIAPRVE 249
>sp|Q9HN45|PCNA_HALSA DNA polymerase sliding clamp OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=pcn PE=3 SV=1
Length = 247
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 103 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDI-GHIRYYLAPKIES 153
F+ YL + KA P + +V L + + P+ + F I D GH+ Y LAP+I+S
Sbjct: 195 FSLDYLKDMNKAIPTTAEVELELGDEFPIKLHFDIADAQGHVTYMLAPRIQS 246
>sp|B0R7F7|PCNA_HALS3 DNA polymerase sliding clamp OS=Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1) GN=pcn PE=3 SV=1
Length = 247
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 103 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDI-GHIRYYLAPKIES 153
F+ YL + KA P + +V L + + P+ + F I D GH+ Y LAP+I+S
Sbjct: 195 FSLDYLKDMNKAIPTTAEVELELGDEFPIKLHFDIADAQGHVTYMLAPRIQS 246
>sp|A9A2X4|PCNA_NITMS DNA polymerase sliding clamp OS=Nitrosopumilus maritimus (strain
SCM1) GN=pcn PE=3 SV=1
Length = 248
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 40/154 (25%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
+ S +F +I D+ + + I + FS GD G I L DK++E +
Sbjct: 134 LSSSKFDKILGDVQVVSDYLTIHTSDSKGDFSGKGDSGEVVIDL------DKDDEGI--- 184
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKA-APLSN 119
+S++E+ T ++ YL KA +
Sbjct: 185 --------------------EEISSKEDSVGT----------YSLEYLNPVVKAVGTTAG 214
Query: 120 QVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIES 153
+ S PL +EFK+ +IG I +YLAP++ES
Sbjct: 215 FITCEFSSAKPLRIEFKVANIGRIHFYLAPRVES 248
>sp|A0B7Y8|PCNA_METTP DNA polymerase sliding clamp OS=Methanosaeta thermophila (strain
DSM 6194 / PT) GN=pcn PE=3 SV=1
Length = 244
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDD 139
A L+ + E + ++ E SL F+ YL + +K+ + +V L + +D PL + F + D
Sbjct: 171 ALKLTMRSSELLDMKPGEARSL-FSLDYLSDMSKSIGKAPEVKLEIGIDYPLRISFMLKD 229
Query: 140 IGHIRYYLAPKIESD 154
H+ Y LAP+IE +
Sbjct: 230 NVHVSYLLAPRIEQE 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,865,374
Number of Sequences: 539616
Number of extensions: 1930454
Number of successful extensions: 4182
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 4054
Number of HSP's gapped (non-prelim): 150
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)