Query psy2363
Match_columns 156
No_of_seqs 118 out of 488
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:04:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fds_C DNA polymerase sliding 100.0 6.5E-28 2.2E-32 198.0 13.9 111 1-151 138-249 (249)
2 3k4x_A PCNA, proliferating cel 99.9 2.4E-27 8.1E-32 221.3 15.5 120 1-155 145-264 (798)
3 3pge_A SUMO-modified prolifera 99.9 4.2E-27 1.4E-31 189.7 13.6 95 26-155 106-200 (200)
4 3p91_A Proliferating cell nucl 99.9 4.3E-27 1.5E-31 193.8 13.9 118 1-155 143-261 (265)
5 3k4x_A PCNA, proliferating cel 99.9 6.2E-27 2.1E-31 218.5 15.5 120 1-155 679-798 (798)
6 3l0w_B Monoubiquitinated proli 99.9 5.7E-26 2E-30 177.5 13.7 92 26-152 78-169 (169)
7 3ifv_A PCNA; processivity fact 99.9 2.2E-25 7.5E-30 181.5 12.7 112 1-154 133-247 (247)
8 3lx2_A DNA polymerase sliding 99.9 7.1E-25 2.4E-29 179.6 14.2 115 1-153 136-250 (259)
9 3fds_D DNA polymerase sliding 99.9 2.4E-24 8.2E-29 175.0 13.8 111 1-151 135-245 (245)
10 1plq_A Proliferating cell nucl 99.9 2.1E-23 7.3E-28 169.1 16.1 120 1-155 139-258 (258)
11 3a1j_C Cell cycle checkpoint p 99.9 4.1E-24 1.4E-28 175.7 10.5 111 1-150 146-262 (263)
12 1u7b_A PCNA, cyclin, prolifera 99.9 3.2E-23 1.1E-27 168.1 15.3 121 1-155 139-259 (261)
13 2zvv_A PCNA 1, proliferating c 99.9 3.6E-22 1.2E-26 164.4 15.5 118 1-152 159-276 (276)
14 3a1j_B HHUS1, checkpoint prote 99.8 1.2E-19 3.9E-24 151.2 14.0 115 1-148 161-278 (281)
15 1iz5_A Proliferating cell nucl 99.8 2.9E-19 1E-23 144.0 14.8 114 1-153 136-249 (249)
16 3aiz_A DNA polymerase sliding 99.8 5.1E-19 1.8E-23 142.5 13.5 111 1-151 138-248 (248)
17 3aiz_C DNA polymerase sliding 99.8 9.8E-19 3.4E-23 140.7 14.1 112 1-152 134-246 (246)
18 1rwz_A DNA polymerase sliding 99.8 1.9E-18 6.5E-23 139.2 14.1 112 1-154 133-245 (245)
19 2ijx_A DNA polymerase sliding 99.8 1.1E-18 3.8E-23 140.3 12.4 111 1-151 134-244 (244)
20 1ud9_A DNA polymerase sliding 99.8 1.1E-18 3.8E-23 140.4 12.0 112 1-152 134-245 (245)
21 3a1j_A Cell cycle checkpoint c 99.6 1.2E-15 4.2E-20 125.2 6.5 112 1-149 147-264 (266)
22 3g65_A Cell cycle checkpoint c 98.5 4.2E-07 1.4E-11 76.2 10.2 121 1-155 147-270 (296)
23 1vpk_A DNA polymerase III, bet 98.3 2.5E-06 8.7E-11 72.7 10.0 99 2-149 270-374 (378)
24 2avt_A DNA polymerase III beta 98.1 1.5E-05 5.1E-10 68.3 10.7 101 2-149 267-374 (378)
25 3d1g_A DNA polymerase III subu 98.1 3.1E-05 1.1E-09 66.1 12.2 100 2-150 259-364 (366)
26 3l0w_B Monoubiquitinated proli 97.8 1.8E-05 6.2E-10 61.1 4.9 47 54-104 106-154 (169)
27 3pge_A SUMO-modified prolifera 97.7 3.9E-05 1.3E-09 61.5 5.1 26 56-81 136-161 (200)
28 3t0p_A DNA polymerase III, bet 97.5 0.0013 4.6E-08 56.1 11.9 102 2-153 260-368 (371)
29 3p91_A Proliferating cell nucl 97.0 0.023 7.8E-07 46.0 13.8 106 2-148 13-121 (265)
30 3a1j_C Cell cycle checkpoint p 96.6 0.075 2.6E-06 42.8 13.8 103 2-147 11-122 (263)
31 3lx2_A DNA polymerase sliding 96.5 0.057 2E-06 43.3 12.8 107 2-152 9-117 (259)
32 3fds_D DNA polymerase sliding 96.5 0.13 4.6E-06 40.7 14.5 107 2-153 8-117 (245)
33 1u7b_A PCNA, cyclin, prolifera 96.4 0.15 5E-06 40.4 14.6 111 2-153 8-121 (261)
34 3p16_A DNA polymerase III subu 96.4 0.051 1.7E-06 47.1 12.3 101 2-149 282-403 (408)
35 1plq_A Proliferating cell nucl 96.3 0.12 4E-06 41.0 13.4 112 2-154 8-122 (258)
36 2zvv_A PCNA 1, proliferating c 96.1 0.22 7.5E-06 40.1 14.2 110 2-152 28-140 (276)
37 3fds_C DNA polymerase sliding 96.0 0.16 5.5E-06 40.8 13.0 104 2-147 8-115 (249)
38 3a1j_B HHUS1, checkpoint prote 96.0 0.1 3.4E-06 42.8 11.7 100 4-136 15-119 (281)
39 1iz5_A Proliferating cell nucl 95.7 0.36 1.2E-05 37.9 13.5 34 2-35 9-42 (249)
40 3aiz_C DNA polymerase sliding 94.7 1.2 4.1E-05 34.8 13.7 34 2-35 7-40 (246)
41 3aiz_A DNA polymerase sliding 94.4 0.73 2.5E-05 36.1 11.9 109 2-152 8-119 (248)
42 3a1j_A Cell cycle checkpoint c 93.9 0.68 2.3E-05 37.2 11.0 111 3-151 10-127 (266)
43 1ud9_A DNA polymerase sliding 93.5 1.2 4.2E-05 34.7 11.5 34 2-35 7-40 (245)
44 2ijx_A DNA polymerase sliding 93.5 1.6 5.6E-05 33.9 12.2 34 2-35 7-40 (244)
45 3ifv_A PCNA; processivity fact 93.1 0.19 6.6E-06 39.9 6.3 34 2-35 7-40 (247)
46 1rwz_A DNA polymerase sliding 92.9 2.7 9.1E-05 32.8 14.0 34 2-35 7-40 (245)
47 3g65_A Cell cycle checkpoint c 80.3 4.8 0.00017 33.1 7.0 42 4-45 11-54 (296)
48 3izc_W 60S ribosomal protein R 80.2 1.9 6.6E-05 31.8 4.1 31 1-31 28-65 (121)
49 4a18_M RPL22, ribosomal protei 79.4 1.9 6.6E-05 31.7 3.8 24 103-126 73-100 (118)
50 1vpk_A DNA polymerase III, bet 75.6 34 0.0012 28.4 11.6 34 1-34 141-183 (378)
51 3iz5_W 60S ribosomal protein L 73.5 3.9 0.00013 30.5 4.1 30 1-30 36-73 (130)
52 3dwl_D Actin-related protein 2 24.6 90 0.0031 26.3 4.7 76 54-151 164-249 (317)
53 2ovi_A Hypothetical protein CH 21.5 1.7E+02 0.0058 21.8 5.3 37 3-40 44-80 (164)
54 2ph0_A Uncharacterized protein 20.4 1.7E+02 0.0058 22.1 5.1 37 3-40 45-81 (174)
No 1
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=99.95 E-value=6.5e-28 Score=197.98 Aligned_cols=111 Identities=16% Similarity=0.291 Sum_probs=98.4
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|+|++|+++||||+.+||+|+|.+++++++|++.||.|+.++.+..+. +.
T Consensus 138 m~s~~f~~~~~dl~~~sd~v~i~~~~~~~~f~~~gd~~~~~~~~~~~~------~l------------------------ 187 (249)
T 3fds_C 138 TDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDK------PL------------------------ 187 (249)
T ss_dssp ECHHHHHHHHHHHHHHCSEEEEEEETTEEEEEEEETTEEEEEEEEETB------EE------------------------
T ss_pred EEHHHHHHHHHHHHHhCCEEEEEEECCEEEEEEEecCcEEEEEEcCCC------Cc------------------------
Confidence 799999999999999999999999999999999999998888886542 12
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhh-hcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecc
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAK-AAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 151 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~K-aa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki 151 (156)
+.+++++|++.+|+++||+.|+| |+++|++|+|+|++++||+|+|.++++|+|+|||||||
T Consensus 188 ----------~~~~~~~~~~~~fsl~yL~~~~K~a~~ls~~V~i~~~~~~Pl~l~y~i~~~G~l~f~lAPri 249 (249)
T 3fds_C 188 ----------KELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL 249 (249)
T ss_dssp ----------SEEEESSCCEEEEEHHHHHHHHHTTTTCCSCEEEEECTTCCEEEEEECTTSCEEEEEECCBC
T ss_pred ----------EEEEcCCceEEEEEHHHHHHHHhhhcccCCEEEEEecCCcCEEEEEEeCCCcEEEEEEeccC
Confidence 23445556666777777999999 99999999999999999999999999999999999997
No 2
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.4e-27 Score=221.28 Aligned_cols=120 Identities=38% Similarity=0.750 Sum_probs=102.2
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|+|++|+++||||+.+||+|+|.+++++|+|++.||.|++++.+++..+.++++..
T Consensus 145 m~s~~f~~~~~dl~~~sd~v~i~~~~~~~~~s~~Gd~g~~~v~~~~~~~~~~~~~~------------------------ 200 (798)
T 3k4x_A 145 LPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETS------------------------ 200 (798)
T ss_dssp EEHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSEEEEEEECCBCCSSCGGGC------------------------
T ss_pred EEHHHHHHHHHHHHhhCCEEEEEEECCEEEEEEEecCcEEEEEEcCCCCCCCccce------------------------
Confidence 78999999999999999999999999999999999999999999887655444444
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccCCCC
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~~e~ 155 (156)
+++++++|++++|+++||+.|+||+++|++|+|+|+++.||+|+|.| ++|+|+||||||+++||
T Consensus 201 ----------~~i~~~e~~~~~ysl~yL~~~~Ka~~ls~~V~l~~~~~~PL~l~y~i-~~G~l~f~lAPri~~~~ 264 (798)
T 3k4x_A 201 ----------IKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDL-KSGFLQFFLAPKFNDEG 264 (798)
T ss_dssp ----------BEEEESSCEEEEEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEEE-TTEEEEEEECCC-----
T ss_pred ----------EEEEeCCceeEEEEHHHHHHhhcccccCCEEEEEeCCCCcEEEEEEE-CCeEEEEEEccCCCCcc
Confidence 44455556666666666999999999999999999999999999999 89999999999999887
No 3
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.2e-27 Score=189.72 Aligned_cols=95 Identities=33% Similarity=0.706 Sum_probs=74.0
Q ss_pred CCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCCCCCCcccccceEEEecCceeeeeeh
Q psy2363 26 KEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFAC 105 (156)
Q Consensus 26 ~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~~~~~~~~~~~V~i~~~~~V~l~Fa~ 105 (156)
+++|+|+++||+|+++|.|++..+.+ ++++.|+|+|++||+++||+
T Consensus 106 kd~v~Fs~~GD~G~~~i~l~~~~~~d----------------------------------k~e~~v~ie~~e~v~~~fsl 151 (200)
T 3pge_A 106 GETIKFVADGDIGSGSVIIKPFVDME----------------------------------HPETSIKLEMDQPVDLTFGA 151 (200)
T ss_dssp -CCEEEEEECSSCEEEEEECCBCCSS----------------------------------SCTTCBEEEESSCEEEEEEH
T ss_pred CceEEEEeeccCCeEEEEEecCCCCC----------------------------------CcccceEEEeCCcceeeEhH
Confidence 56666666666666666666655444 44555666666677777777
Q ss_pred hhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccCCCC
Q psy2363 106 RYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155 (156)
Q Consensus 106 ~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~~e~ 155 (156)
+||+.|+||++||++|+|+|++++||+|+|+|+ +|+|+|||||||++|+
T Consensus 152 ~YL~~f~Ka~~ls~~V~l~l~~~~Pl~l~y~i~-~G~l~f~LAPrie~~~ 200 (200)
T 3pge_A 152 KYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLK-SGFLQFFLAPKFNDEE 200 (200)
T ss_dssp HHHHHHGGGGGGCSEEEEEECSSSCEEEEEEET-TEEEEEEECCCCC---
T ss_pred HHHHHHhccccCCCeEEEEEcCCCCEEEEEEEC-CEEEEEEECCccCCCC
Confidence 779999999999999999999999999999998 8999999999999875
No 4
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=99.95 E-value=4.3e-27 Score=193.82 Aligned_cols=118 Identities=36% Similarity=0.672 Sum_probs=97.9
Q ss_pred CCcHHHHHHHHHHhccC-CeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 1 MPSGEFARICRDLAQFG-ESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~g-d~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
|+|++|+++||+++.+| |.|+|.+++++|+|++.||.|++++.+.+....+ +
T Consensus 143 ~~s~~f~~~i~~~~~~s~d~V~i~~~~~~v~~ss~gd~G~~~~~l~~~~~~~--~------------------------- 195 (265)
T 3p91_A 143 LSSAEFLKITKDFSALGDDSITIGCTKNEVTLTTKGAMCETCMTLSALENVD--S------------------------- 195 (265)
T ss_dssp EEHHHHHHHHHHHHHHCCSEEEEEECSSEEEEEEECSSCEEEEEEEC---------------------------------
T ss_pred EEHHHHHHHHHHHHhCCCCEEEEEEECCEEEEEEEecCceEEEEEecCCCCC--C-------------------------
Confidence 68999999999999999 9999999999999999999999999997654321 1
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccCCCC
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~~e~ 155 (156)
..+++++.+|++.+|+++||+.++||+++|++|+|+|+++.||+|+|.+ ++|+|+||||||+++||
T Consensus 196 ---------~~~~~~~~e~~~~~F~~~YL~~~~Ka~~ls~~V~i~~~~~~Pl~l~~~i-~~g~~~f~lAPri~~~~ 261 (265)
T 3p91_A 196 ---------NGLQIEHNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFKG-EACVLKFYLAPKFDEED 261 (265)
T ss_dssp ----------CCEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECSSSCEEEEEEE-TTEEEEEEECCBC----
T ss_pred ---------ceEEEEcCCcEEEEEEHHHHHHhhcccccCCEEEEEeCCCccEEEEEEE-CCEEEEEEEcCCCCCcc
Confidence 1244555566777777777999999999999999999999999999999 79999999999999886
No 5
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.2e-27 Score=218.48 Aligned_cols=120 Identities=38% Similarity=0.757 Sum_probs=102.7
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|+|.+|+++||||+.+||+|+|++++++|+|++.||.|++++.+.+....+++++.
T Consensus 679 m~s~~f~~~~~~l~~~sd~v~i~~~~~~v~~s~~gd~G~~~~~l~~~~~~~~~~~~------------------------ 734 (798)
T 3k4x_A 679 LPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETS------------------------ 734 (798)
T ss_dssp EEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEEEEECCBCCSSCGGGC------------------------
T ss_pred EEHHHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEcccceEEEEecCCCCCCCcccc------------------------
Confidence 78999999999999999999999999999999999999999999887665554444
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccCCCC
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~~e~ 155 (156)
++|++++|++++|+++||+.|+||++||++|+|+|++++||+|+|.| ++|+|+|||||||++|+
T Consensus 735 ----------~~i~~~e~~~~~f~l~YL~~~~Ka~~ls~~V~i~~~~~~Pl~~~y~i-~~G~i~fylAPki~~~~ 798 (798)
T 3k4x_A 735 ----------IKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDL-KSGFLQFFLAPKFNDEE 798 (798)
T ss_dssp ----------BEEEESSCEEEEEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEEE-TTEEEEEEECCC-----
T ss_pred ----------EEEEcCCceEEEEEHHHHHHHhhhccCCCeEEEEeCCCccEEEEEEE-cceEEEEEECcCCCCCC
Confidence 44555556666667777999999999999999999999999999999 89999999999999985
No 6
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.94 E-value=5.7e-26 Score=177.54 Aligned_cols=92 Identities=34% Similarity=0.702 Sum_probs=74.3
Q ss_pred CCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCCCCCCcccccceEEEecCceeeeeeh
Q psy2363 26 KEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFAC 105 (156)
Q Consensus 26 ~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~~~~~~~~~~~V~i~~~~~V~l~Fa~ 105 (156)
+++|+|+++||+|+++|.+++..+. +++++.|+|+|++|++++||+
T Consensus 78 k~~vkfs~~Gd~g~~~i~l~~~~~~----------------------------------~~~~~~~~i~~~~~~~~~fsl 123 (169)
T 3l0w_B 78 GETIKFVADGDIGSGSVIIKPFVDM----------------------------------EHPETSIKLEMDQPVDLTFGA 123 (169)
T ss_dssp -CCEEEEEECSSCEEEEEECCBCCS----------------------------------SCGGGCBEEEESSCEEEEEEH
T ss_pred cccccccccCcccceeEEEecCCCC----------------------------------CCcccceEEecCCcceEEEhH
Confidence 4666777777777777666665544 344555666666777777777
Q ss_pred hhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccC
Q psy2363 106 RYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152 (156)
Q Consensus 106 ~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~ 152 (156)
+||+.|+||+++|++|+|+|++++||+++|+++ +|+|+|||||||+
T Consensus 124 ~yl~~~~ka~~~s~~v~l~~~~~~Pl~~~~~~~-~g~~~~~lAPri~ 169 (169)
T 3l0w_B 124 KYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLK-SGFLQFFLAPKFN 169 (169)
T ss_dssp HHHHHHGGGGGGCSEEEEEECSSSCEEEEEEET-TEEEEEEECCCCC
T ss_pred HHHHHHhccccCCCeEEEEEcCCCCEEEEEEEC-CEEEEEEEccccC
Confidence 779999999999999999999999999999997 8999999999996
No 7
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.93 E-value=2.2e-25 Score=181.53 Aligned_cols=112 Identities=23% Similarity=0.469 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEe--CCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeeccccc
Q psy2363 1 MPSGEFARICRDLAQFGESINISCT--KEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFA 78 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~--~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~ 78 (156)
|++++|+++||+++.+||.|+|.++ +++++|++.||.|++++.+.++. .+.++
T Consensus 133 ~~s~~f~~~i~~~~~~sd~V~i~~~~~~~~~~~s~~gd~g~~~~~l~~~~-------~~~~~------------------ 187 (247)
T 3ifv_A 133 LEGTHLDRGIKAADMVSDHIRLRVDGAEETFHIEAEGDTDDVDLSLPPAD-------LISIE------------------ 187 (247)
T ss_dssp EEHHHHHHHHHHHHHHCSEEEEEEETTTTEEEEEEECSSCEEEEEECGGG-------CSEEE------------------
T ss_pred EEHHHHHHHHHHHHhhCCEEEEEEECCCCEEEEEEEecceEEEEEECCCc-------eEEEe------------------
Confidence 6899999999999999999999999 99999999999999998886431 22333
Q ss_pred CCCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeC-CCeEEEEEEeeccCCC
Q psy2363 79 KAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKID-DIGHIRYYLAPKIESD 154 (156)
Q Consensus 79 k~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~-~~G~l~~yLAPki~~e 154 (156)
.+|++.+|+++||+.++||+++|++|+|+|++++||+++|.++ +.|+++||||||+++|
T Consensus 188 -----------------~e~~~~~F~~~YL~~~~Ka~~~s~~V~i~~~~~~Pl~l~~~i~~~~g~~~~~lAPri~~~ 247 (247)
T 3ifv_A 188 -----------------AGAADSLFSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQIAEGMGTITYMLAPRIQSD 247 (247)
T ss_dssp -----------------ECCCEEEEEHHHHHHHHHHSCTTCEEEEEECBSSCEEEEEEEGGGTEEEEEEECCC----
T ss_pred -----------------cCeEEEEEeHHHHHHhhhhccCCCEEEEEecCCccEEEEEEEcCCcEEEEEEEeecccCC
Confidence 3456666666669999999999999999999999999999998 4799999999999986
No 8
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=99.92 E-value=7.1e-25 Score=179.62 Aligned_cols=115 Identities=19% Similarity=0.419 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++++|+++||+++.+|+.|+|.+++++++|++.||.|++++.+.+... ..+.+++.
T Consensus 136 ~~s~~f~~~i~~~~~~sd~V~i~~~~~~v~~ss~gd~G~~~~~l~~~~~-----~~~~~~~~------------------ 192 (259)
T 3lx2_A 136 VLAGALKRAVKAAKLVSDSIYFMATPEKLTFKAEGNDSEVRTVLTMEDP-----GLLDLEHK------------------ 192 (259)
T ss_dssp EEHHHHHHHHHHHHHHCSEEEEEECSSCEEEEEECSSCEEEEEECTTST-----TEEEEEES------------------
T ss_pred EEHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCcEEEEEEcCCCC-----ceEEEEec------------------
Confidence 6899999999999999999999999999999999999999999876532 23444444
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccCC
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIES 153 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~~ 153 (156)
.+|++.+|+++||+.++||+++|++|+|+|+++.||+++|.++++|+++||||||+++
T Consensus 193 ---------------~e~~~~~F~~~YL~~~~Ka~~~s~~V~l~~~~~~Pl~l~~~i~~~g~~~y~laP~~~~ 250 (259)
T 3lx2_A 193 ---------------MTKAKSAYGVAYLEDILRSLADADEVIIRFGFDIPLLLKYMVRDAGEVSFLIAPRVEE 250 (259)
T ss_dssp ---------------SSCEEEEEEHHHHHHHHSSSCTTSEEEEEECTTSCEEEEEEETTTEEEEEEECCCC--
T ss_pred ---------------CceEEEEEEHHHHHhhhccccCCCeEEEEeCCCCCEEEEEEeCCCeEEEEEEccccCC
Confidence 0455555556669999999999999999999999999999999899999999999986
No 9
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.92 E-value=2.4e-24 Score=174.99 Aligned_cols=111 Identities=25% Similarity=0.464 Sum_probs=97.5
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++++|+++||+++.+||.|+|.+++++++|++.||.|++++.+.+..+ ..+.++
T Consensus 135 ~~s~~f~~~i~~~~~~s~~V~i~~~~~~l~~s~~gd~g~~~~~l~~~~~-----~~~~~~-------------------- 189 (245)
T 3fds_D 135 LLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNG-----TLLEAS-------------------- 189 (245)
T ss_dssp EEHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSCEEEEEECTTSS-----SCSEEE--------------------
T ss_pred EEHHHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEecCcEEEEEEcCCCC-----ceEEEe--------------------
Confidence 6899999999999999999999999999999999999999999876432 122333
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecc
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 151 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki 151 (156)
.+|++.+|+++||+.++|+.++|++|+|+|+++.||+++|.++++|+++||||||+
T Consensus 190 ---------------~e~~~~~F~~~YL~~~~ka~~~s~~V~i~~~~~~Pl~l~~~i~~~g~~~y~laPr~ 245 (245)
T 3fds_D 190 ---------------GADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRA 245 (245)
T ss_dssp ---------------ECCCEEEEEHHHHHHGGGGGGTCSEEEEEECTTSCEEEEEECSTTCEEEEEECCCC
T ss_pred ---------------cceEEEEEEHHHHHHHhhhcccCCEEEEEecCCccEEEEEEeCCCeEEEEEEeecC
Confidence 34666666666699999999999999999999999999999999999999999996
No 10
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=99.91 E-value=2.1e-23 Score=169.10 Aligned_cols=120 Identities=38% Similarity=0.757 Sum_probs=102.8
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++.+|+++||+++.+|+.|+|.+++++++|++.||.|++.+.+....+.+++++.+.++
T Consensus 139 ~~~~~l~~av~r~~~~s~~v~i~~~~~~l~ls~~~d~g~~~~~l~~~~~~~~~~~~~~~~-------------------- 198 (258)
T 1plq_A 139 LPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLE-------------------- 198 (258)
T ss_dssp EEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEEEEECCBCCTTCGGGCBEEE--------------------
T ss_pred EeHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEccCceEEEEEecCCCCCCCccceEEe--------------------
Confidence 678999999999999999999999999999999999999999997654433333334444
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccCCCC
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~~e~ 155 (156)
+.+|++..|+++||..+.|+.++|++|+|+|+++.|+.++|.++ +|+++||||||+++||
T Consensus 199 --------------~ge~~~i~f~~~yL~~~lka~~~s~~V~i~~~~~~Pl~l~~~~~-~~~~~y~l~P~~~~e~ 258 (258)
T 1plq_A 199 --------------MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLK-SGFLQFFLAPKFNDEE 258 (258)
T ss_dssp --------------ESSCEEEEEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEEET-TEEEEEEECCCSSSCC
T ss_pred --------------cCCcEEEEEEHHHHHHHhccccCCceEEEEECCCCCEEEEEEEC-CeEEEEEECCcCCCCC
Confidence 44555666666669999999999999999999999999999998 7899999999999875
No 11
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=99.90 E-value=4.1e-24 Score=175.69 Aligned_cols=111 Identities=18% Similarity=0.284 Sum_probs=98.2
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCC--eEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeeccccc
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKE--GVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFA 78 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~--~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~ 78 (156)
|+|++|+++||||..+||+|+|.++++ +|+|+++||.|++++.+.+... ..+
T Consensus 146 m~s~~l~~~~~dl~~~~d~v~i~~~~~~p~~~~~~~Gd~g~~~i~~~~~~~-----~~~--------------------- 199 (263)
T 3a1j_C 146 LQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSD-----LME--------------------- 199 (263)
T ss_dssp EEGGGGHHHHHTSCTTSSEEEEEECSSSSSEEEEEEETTEEEEEEECTTCS-----SEE---------------------
T ss_pred EehHHHHHHHHHHhccCCeEEEEEEcCCCEEEEEEEcCCccEEEEEcCCCC-----eEE---------------------
Confidence 789999999999999999999999999 9999999999999999976432 123
Q ss_pred CCCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCC-CeE---EEEEEeec
Q psy2363 79 KAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDD-IGH---IRYYLAPK 150 (156)
Q Consensus 79 k~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~-~G~---l~~yLAPk 150 (156)
++++++|++.+|+++||+.++||+++|++|+|+|+++.||+|+|.+.+ +|+ |+||||||
T Consensus 200 -------------~~~~~~~~~~~y~l~yL~~~~ka~~~s~~v~i~~~~~~pL~l~~~i~~~~g~~~~v~f~laP~ 262 (263)
T 3a1j_C 200 -------------AFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPD 262 (263)
T ss_dssp -------------EEEECSCEEEEEEHHHHTTHHHHHHHCSEEEEEEETTCCEEEEEEEECTTSCEEEEEEEECCC
T ss_pred -------------EEEeCChhhcEEeHHHHHHHHhhhhhcCEEEEEECCCeeEEEEEEEecCCCCEEEEEEEEEEC
Confidence 344455677777777799999999999999999999999999999987 788 99999998
No 12
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=99.90 E-value=3.2e-23 Score=168.06 Aligned_cols=121 Identities=69% Similarity=1.140 Sum_probs=99.1
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++.+|+++||+++.+|+.|+|.+++++++|++.||.|++.+.+....+.+++++.
T Consensus 139 ~~~~~l~~ai~r~~~~s~~v~i~~~~~~l~ls~~~d~g~~~~~~~~~~~~~~~~~~------------------------ 194 (261)
T 1u7b_A 139 MPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEA------------------------ 194 (261)
T ss_dssp EEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEETTEEEEEEECCCC----CCSC------------------------
T ss_pred EEHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCceEEEEEecCCCCCCCccc------------------------
Confidence 67899999999999999999999999999999999999999998765433222333
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccCCCC
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~~e~ 155 (156)
+++++.+|++..|..+||..+.|+.++|++|+|+|+++.|+.++|.++++|+++||||||+++||
T Consensus 195 ----------~~~~~~e~~~i~f~~~yL~~~lka~~~s~~V~i~~~~~~P~~l~~~~~~~~~~~y~l~P~i~~e~ 259 (261)
T 1u7b_A 195 ----------VTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259 (261)
T ss_dssp ----------CEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECTTSCEEEEEEETTTEEEEEEECCBC----
T ss_pred ----------eEEecCCcEEEEEeHHHHHHHhCcccCCCeEEEEECCCCCEEEEEEeCCCcEEEEEECCcCcccC
Confidence 44455556666666667999999999999999999999999999999767999999999999876
No 13
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=99.89 E-value=3.6e-22 Score=164.43 Aligned_cols=118 Identities=60% Similarity=1.020 Sum_probs=100.3
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++.+|+++||+++.+|+.|+|.+++++++|++.||.|++.+.+.+..+.+++++.
T Consensus 159 ~~~~~l~~av~r~~~~sd~V~i~~~~~~l~lsa~gd~g~~~~~l~~~~~~~~~~~~------------------------ 214 (276)
T 2zvv_A 159 MPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDA------------------------ 214 (276)
T ss_dssp EEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEETTEEEEEEECCCSSCCSGGGC------------------------
T ss_pred EEHHHHHHHHHHHHhhCCEEEEEEeCCEEEEEEEeeccEEEEEEccCCCCCCcccc------------------------
Confidence 67899999999999999999999999999999999999999998765543333333
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccC
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~ 152 (156)
+++++.+|++..|..+||..+.|+.++|++|+|+|+++.|+.|+|.++++|+++||||||++
T Consensus 215 ----------~~~~~ge~~~i~fn~~YL~d~lka~~ls~~V~i~l~~~~Pl~l~~~~~~~g~~~y~laP~i~ 276 (276)
T 2zvv_A 215 ----------IVIEMKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIE 276 (276)
T ss_dssp ----------CEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECTTSCEEEEEEETTTEEEEEEECCBC-
T ss_pred ----------EEEecCCcEEEEEEHHHHHHHhccccCCCEEEEEEcCCceEEEEEEeCCCcEEEEEEccccC
Confidence 34444556666666666999999999999999999999999999999767999999999986
No 14
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=99.82 E-value=1.2e-19 Score=151.18 Aligned_cols=115 Identities=10% Similarity=0.229 Sum_probs=96.2
Q ss_pred CCc-HHHHHHHHHHhccCCeEEEEEeCCe-EEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeeccccc
Q psy2363 1 MPS-GEFARICRDLAQFGESINISCTKEG-VKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFA 78 (156)
Q Consensus 1 m~s-~~f~~i~rdl~~~gd~v~i~~~~~~-v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~ 78 (156)
||| .+|++||+||.++||+|+|+++++| ++|+++||.+++.+.+++......
T Consensus 161 lPsl~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~~~d~~~~~~~~~~l~~~~~-------------------------- 214 (281)
T 3a1j_B 161 LPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPL-------------------------- 214 (281)
T ss_dssp CCCHHHHHHHHHHHHTTCSEEEEEECTTSCEEEEEECSSEEEEEEECCCCCCCC--------------------------
T ss_pred CCCHHHHHHHHHHHhccCCeEEEEEECCCeEEEEEEeeeEEEEEEEcCCCCCCC--------------------------
Confidence 788 7999999999999999999999888 999999999999999987432100
Q ss_pred CCCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEE-eeCCCcEEEEEEeCCCeEEEEEEe
Q psy2363 79 KAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLS-MSLDVPLVVEFKIDDIGHIRYYLA 148 (156)
Q Consensus 79 k~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~-l~~~~Pl~v~f~i~~~G~l~~yLA 148 (156)
+++++.++++++++++++|++|||..|+|+++|+.+|.+. ++.+.||.+ |.+.+.|+|+|||+
T Consensus 215 ------~~~~~~~~~~~~~~~sv~~~~k~l~~f~k~~~ls~~v~~~~i~~~~~l~~-y~~~~~g~l~yylp 278 (281)
T 3a1j_B 215 ------ASESTHEDRNVEHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHF-DLLHEDVSLQYFIP 278 (281)
T ss_dssp ----------------CCCCEEEEEEHHHHHHHHHHCCSCCSEEEEEEETTTEEEE-EEESSSCEEEEEEE
T ss_pred ------CccccccccCCCccEEEEEEHHHHHHhhCcccCCCcEEEEEEeCCceEEE-EEeCCcEEEEEEee
Confidence 0112335677889999999999999999999999999999 999999999 99999999999996
No 15
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=99.82 E-value=2.9e-19 Score=144.03 Aligned_cols=114 Identities=20% Similarity=0.398 Sum_probs=94.8
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++.+|+++|++++.+++.|+|.++++.++|++.||.|+++..+..... +.+.+++.+
T Consensus 136 i~~~~l~~a~~r~~~ls~~V~l~~~~~~l~ls~~~d~g~~~~~l~~~~~-----~~~~~~~ge----------------- 193 (249)
T 1iz5_A 136 VLGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDE-----GLLDIEVQE----------------- 193 (249)
T ss_dssp EEHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSCEEEEEEETTTT-----SSSEEEESS-----------------
T ss_pred EEHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCceEEEEEccCCC-----ccEEEEcCC-----------------
Confidence 5789999999999999999999999999999999999999988865432 123444444
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccCC
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIES 153 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~~ 153 (156)
|++..|..+||..+.|+.++|++|.|+|+++.|+.++|.++++|++.||||||+++
T Consensus 194 -----------------~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~~~~ 249 (249)
T 1iz5_A 194 -----------------ETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPRVEE 249 (249)
T ss_dssp -----------------CEEEEEEHHHHHHHHTTSCTTCEEEEEECTTCCEEEEEEETTTEEEEEEECCC---
T ss_pred -----------------ceEEEEeHHHHHHHhhhccCCCeEEEEEcCCCCEEEEEEeCCCcEEEEEEccccCC
Confidence 45555555559999999999999999999999999999997679999999999974
No 16
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=99.80 E-value=5.1e-19 Score=142.54 Aligned_cols=111 Identities=21% Similarity=0.378 Sum_probs=95.0
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++.+|+++||+++.+++.|+|.+++++++|++.||.|+++..+.+..+ .+.+++
T Consensus 138 ~~~~~l~~av~r~~~~s~~V~i~~~~~~l~ls~~~d~g~~~~~~~~~~~------~~~~~~------------------- 192 (248)
T 3aiz_A 138 TDGDVLKDIARDLSLVGEEVEISADENTVTLSTEEAGRTYKSLLKQDKP------LKSLNV------------------- 192 (248)
T ss_dssp ECHHHHHHHHHHHTTSCSEEEEEECSSEEEEEEEETTEEEEEEEEETBE------ESEEEE-------------------
T ss_pred EeHHHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEccCceEEEEEcCCCc------ceEEec-------------------
Confidence 6789999999999999999999999999999999999999988865321 123333
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecc
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 151 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki 151 (156)
.+|++..|..+||..+.|+.++|++|.|+|+++.|+.++|.++++|+++|||||||
T Consensus 193 ---------------ge~~~i~fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~i 248 (248)
T 3aiz_A 193 ---------------ESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQLIFWIAPRL 248 (248)
T ss_dssp ---------------SSCEEEEEEHHHHHHHHHHGGGCSSEEEEEETTEEEEEEEECTTSCEEEEEECCCC
T ss_pred ---------------CCceEEEEEHHHHHHHhhhccCCCeEEEEEcCCCCEEEEEEeCCCcEEEEEECCcC
Confidence 34556666666699999999999999999999999999999976789999999996
No 17
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=99.80 E-value=9.8e-19 Score=140.73 Aligned_cols=112 Identities=22% Similarity=0.409 Sum_probs=95.4
Q ss_pred CCcHHHHHHHHHHhcc-CCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 1 MPSGEFARICRDLAQF-GESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~-gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
|++.+|+++|++++.+ ++.|+|.++++.++|++.||.|+++..+..... ..+.++. +
T Consensus 134 i~~~~l~~a~~r~~~l~s~~V~l~~~~~~l~ls~~~d~g~~~~~l~~~~~-----~~~~~~g-e---------------- 191 (246)
T 3aiz_C 134 ALTVTFTDIIDEIEDIGGDSITFKAEGGKLYLSANSDMGSSTIELSTENG-----GLLESEG-G---------------- 191 (246)
T ss_dssp EEHHHHHHHHHHHHHHCCSEEEEEEETTEEEEEEECSSCEEEEEECTTTT-----SCSEEEE-C----------------
T ss_pred EEHHHHHHHHHHHhhCCCCEEEEEEECCEEEEEEEcCCceEEEEEecCCC-----ccEEEEE-e----------------
Confidence 5789999999999999 999999999999999999999999988865422 1234444 3
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccC
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~ 152 (156)
|++..|..+||..+.|+.++|++|.|+|+++.|+.++|.++++|+++||||||++
T Consensus 192 ------------------~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~~~ 246 (246)
T 3aiz_C 192 ------------------DAESVYGLEYVVNTSKMRKPSDTVEIAFGSQIPLKLRYNLPQGGYADFYIAPRAE 246 (246)
T ss_dssp ------------------CEEEEEEHHHHHTTGGGTTTCSEEEEEEETTEEEEEEEEETTTEEEEEEECBCCC
T ss_pred ------------------eEEEEEEHHHHHHHhhhccCCCeEEEEecCCCcEEEEEEeCCCCEEEEEEcccCC
Confidence 4455555555999999999999999999999999999999777999999999986
No 18
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=99.79 E-value=1.9e-18 Score=139.18 Aligned_cols=112 Identities=26% Similarity=0.473 Sum_probs=91.6
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++.+|+++|++++.+++.|+|.++++.++|++.||.|++.....+. ..+.++.++
T Consensus 133 ~~~~~l~~av~r~~~ls~~V~l~~~~~~l~ls~~~d~g~~~~~~~~e-------~~~~~~g~~----------------- 188 (245)
T 1rwz_A 133 MDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDSIVFHMTET-------ELIEFNGGE----------------- 188 (245)
T ss_dssp EEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEEEEECGG-------GSSEECCCC-----------------
T ss_pred EEHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEccCcEEEEecCCC-------ccEEEEEee-----------------
Confidence 57899999999999999999999999999999999999855433211 123333333
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCC-eEEEEEEeeccCCC
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDI-GHIRYYLAPKIESD 154 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~-G~l~~yLAPki~~e 154 (156)
++..|..+||..+.|+.++|++|.|+|+++.|+.++|.++++ |++.||||||+++|
T Consensus 189 ------------------~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~~y~i~P~~~~~ 245 (245)
T 1rwz_A 189 ------------------ARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIESE 245 (245)
T ss_dssp ------------------EEEEEEHHHHHHHGGGCCTTCEEEEEECSSSCEEEEEEETTTTEEEEEEECCBCCC-
T ss_pred ------------------EEEEEeHHHHHHHhhhccCCCeEEEEECCCCCEEEEEEECCCcEEEEEEEccccCCC
Confidence 444455555999999999999999999999999999999766 89999999999865
No 19
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=99.78 E-value=1.1e-18 Score=140.28 Aligned_cols=111 Identities=18% Similarity=0.369 Sum_probs=94.1
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++.+|+++|++++.+++.|+|.++++.++|++.||.|+ +..+.+..+ +.+.+++.
T Consensus 134 i~~~~l~~a~~r~~~~s~~V~l~~~~~~l~ls~~~d~g~-~~~l~~~~~-----~~~~~~~g------------------ 189 (244)
T 2ijx_A 134 ISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEV-EVEFSKDTG-----GLQDLEFS------------------ 189 (244)
T ss_dssp EEHHHHHHHHHHHTTTCSEEEEEEETTEEEEEETTCTTS-EEEEETTTT-----CEEEEEES------------------
T ss_pred EEHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCce-EEEEeCCCC-----ccEEEEcC------------------
Confidence 578999999999999999999999999999999999999 988865321 23344444
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecc
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 151 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki 151 (156)
+|++..|..+||..+.|+.++|++|.|+|+++.|+.++|.++++|++.||||||+
T Consensus 190 ----------------e~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~~ 244 (244)
T 2ijx_A 190 ----------------KESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244 (244)
T ss_dssp ----------------SCEEEEEEHHHHHHTGGGGGGCSEEEEEEETTEEEEEEEECGGGCEEEEEECCCC
T ss_pred ----------------CceEEEEEHHHHHHHhhhccCCCEEEEEEcCCCCEEEEEEeCCCcEEEEEECccC
Confidence 4455555555599999999999999999999999999999976789999999996
No 20
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=99.78 E-value=1.1e-18 Score=140.38 Aligned_cols=112 Identities=20% Similarity=0.393 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
|++.+|+++|++++.+++.|+|.++++.++|++.||.|+ +..+....+ +.+.+++.
T Consensus 134 i~~~~l~~a~~r~~~~s~~V~l~~~~~~l~ls~~~d~g~-~~~l~~~~~-----~~~~~~~g------------------ 189 (245)
T 1ud9_A 134 INASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGENKV-EVEFSKDTG-----SLADIEFN------------------ 189 (245)
T ss_dssp EEHHHHHHHHHHHHHHCSEEEEEECSSEEEEEESSSSCC-CEEEEGGGT-----CEEEEEES------------------
T ss_pred EeHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEccCce-EEEEecCCC-----ccEEEEeC------------------
Confidence 578999999999999999999999999999999999999 888865321 13344444
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccC
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~ 152 (156)
+|++..|..+||..+.|+.++|++|.|+|+++.|+.++|.+.++|++.||||||++
T Consensus 190 ----------------e~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~~~ 245 (245)
T 1ud9_A 190 ----------------KESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTYLLAPKLS 245 (245)
T ss_dssp ----------------SCEEEEEEHHHHHHTGGGGGGCSEEEEEECTTSCEEEEEECGGGCEEEEEECCBCC
T ss_pred ----------------CceeEEEEHHHHHHHhhhcccCCEEEEEEcCCCCEEEEEEeCCCcEEEEEEcccCC
Confidence 44555555555999999999999999999999999999998656899999999986
No 21
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=99.59 E-value=1.2e-15 Score=125.25 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=85.3
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEe-CCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCT-KEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~-~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
|++.+|+++|+++..++|+|+|.++ +++|.|++.||.+.... . ..+..+ .++.
T Consensus 147 ~~s~~~~~~~~~~~~~~d~v~i~~~~~~~v~~~s~~~~~~~~~----~-------~~~~t~--------~~~~------- 200 (266)
T 3a1j_A 147 APARVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADST----A-------KAMVTE--------MCLG------- 200 (266)
T ss_dssp EEHHHHHHHHTTSCTTCCEEEEEECGGGCEEEEEECCC-CCCS----C-------CCCEEE--------EEEC-------
T ss_pred EChHHHHHHHHhCCCChhhEEEEeCCCCEEEEEEcccCccccc----c-------ccceEE--------EEEC-------
Confidence 6899999999999999999999999 99999999887542210 0 011111 1111
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHh---hhhhcCCCceEEEEee-CCCcEEEEEEeCCCe-EEEEEEee
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLN---FAKAAPLSNQVCLSMS-LDVPLVVEFKIDDIG-HIRYYLAP 149 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~---f~Kaa~ls~~V~l~l~-~~~Pl~v~f~i~~~G-~l~~yLAP 149 (156)
.++-+++++.+|++++|++|||+. |+++++++ |+|.|+ .+.||+++| .++| +++||||-
T Consensus 201 -------~~e~~~~~~~~~~~~tFslkyl~~~l~f~~~~~~~--v~i~~~~~g~Pl~~~~--~~~~~~~~f~LAT 264 (266)
T 3a1j_A 201 -------EEDFQQLQAQEGVAITFCLKEFRGLLSFAESANLN--LSIHFDAPGRPAIFTI--KDSLLDGHFVLAT 264 (266)
T ss_dssp -------GGGCSEEECCTTCEEEEEHHHHHHHHHHHHHTTCE--EEEEECSTTSCEEEEE--ECSSEEEEEEECC
T ss_pred -------HHHhhheecCCCCEEEEEHHHHHHHHHHHHhcCCc--EEEEECCCCccEEEEE--eCCcEEEEEEEee
Confidence 134567778889999999999999 77776665 999995 699999999 3455 99999993
No 22
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=98.54 E-value=4.2e-07 Score=76.23 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=86.9
Q ss_pred CCcHHHHHHHHHHhccCCeEEEEEe-CCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 1 MPSGEFARICRDLAQFGESINISCT-KEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~v~i~~~-~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
|++..|.+++.+.....|.|+|.++ ++.+.|++-+|-.... . + ..+..++ ++..
T Consensus 147 i~~~~l~e~l~~f~~~~eevtl~~~~~~~v~~~s~~e~~~d~-----~----~--~~~~Tel--------~i~~------ 201 (296)
T 3g65_A 147 APARVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADS-----T----A--KAMVTEM--------CLGE------ 201 (296)
T ss_dssp EEHHHHHHHSTTSCTTCCEEEEEEETTTEEEEEECCC----------C----C--CCCEEEE--------EECG------
T ss_pred EchHHHHHHHHhCcCCcceEEEEECCCCeEEEEEeccccccc-----c----C--ceEEEEE--------EECh------
Confidence 3578899999999999999999999 8999999887632110 0 0 0111111 1110
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhc-CCCceEEEEeeC-CCcEEEEEEeCCCeEEEEEEeeccCCCC
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAA-PLSNQVCLSMSL-DVPLVVEFKIDDIGHIRYYLAPKIESDD 155 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa-~ls~~V~l~l~~-~~Pl~v~f~i~~~G~l~~yLAPki~~e~ 155 (156)
++=...++.+|+..+|.+|+|+.+...+ .++..|++.|+. +.||.+.|+- +...+.|.||+.-+.|.
T Consensus 202 --------~ef~~~~v~~~~~itf~lKefrail~~ae~~~~~i~i~f~~pG~Pl~~~~~~-~~~~~~fvLaT~~~~~~ 270 (296)
T 3g65_A 202 --------EDFQQLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKD-SLLDGHFVLATLSDTDS 270 (296)
T ss_dssp --------GGCSEEECCTTCEEEEEHHHHHHHHHHHHHTTCEEEEECCSTTSCEEEEEEC-SSCEEEEEECCCCSSSC
T ss_pred --------hHheeEecCCCcEEEEEHHHHHHHHHHHHhcCCeEEEEECCCCCcEEEEEeC-CcEEEEEEEEECCCCCC
Confidence 1112334567788888888899999766 667799999995 9999999994 58899999999988764
No 23
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=98.33 E-value=2.5e-06 Score=72.75 Aligned_cols=99 Identities=13% Similarity=0.251 Sum_probs=77.2
Q ss_pred CcHHHHHHHHHHhccCCe----EEEEEeCCeEEEEEee-cceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeeccc
Q psy2363 2 PSGEFARICRDLAQFGES----INISCTKEGVKFSATG-DIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLN 76 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~----v~i~~~~~~v~f~~~g-d~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~ 76 (156)
+..+|.++++-++.+++. |++...++.+++++.+ |.|++.-.+. +.++ .++..+.|..+
T Consensus 270 ~~~~l~~al~Rv~~~s~~~~~~v~l~~~~~~l~i~a~~~d~g~a~e~l~-----------~~~~-G~~~~i~fN~~---- 333 (378)
T 1vpk_A 270 SRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVE-----------VQKE-GEDLVIAFNPK---- 333 (378)
T ss_dssp EHHHHHHHHHHHHHHHTTTTCCEEEEECSSEEEEEEEETTTEEEEEEEE-----------CEEE-ECCEEEEECHH----
T ss_pred EHHHHHHHHHHHHHHhcCCCceEEEEEeCCEEEEEEcCCccceeEEEEE-----------EEec-CCeEEEEEcHH----
Confidence 357899999999999876 9999999999999988 8887764441 1111 12234445555
Q ss_pred ccCCCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEee
Q psy2363 77 FAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAP 149 (156)
Q Consensus 77 ~~k~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~-~Pl~v~f~i~~~G~l~~yLAP 149 (156)
||....++.. +++|.|.|+.. .|+.++.. + ++...|+|+|
T Consensus 334 ------------------------------yL~d~L~~~~-~~~v~l~~~~~~~p~~i~~~-~-~~~~~~limP 374 (378)
T 1vpk_A 334 ------------------------------FIEDVLKHIE-TEEIEMNFVDSTSPCQINPL-D-ISGYLYIVMP 374 (378)
T ss_dssp ------------------------------HHHHHHHHCC-SSEEEEEESCTTSCEEEEET-T-CCSEEEEECC
T ss_pred ------------------------------HHHHHHhcCC-CCEEEEEECCCCCCEEEEcC-C-CCceEEEEEe
Confidence 4999999988 99999999998 89999986 3 4678999999
No 24
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=98.14 E-value=1.5e-05 Score=68.32 Aligned_cols=101 Identities=14% Similarity=0.230 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHhccCCe-----EEEEEeCCeEEEEEee-cceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecc
Q psy2363 2 PSGEFARICRDLAQFGES-----INISCTKEGVKFSATG-DIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLL 75 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~-----v~i~~~~~~v~f~~~g-d~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~ 75 (156)
+..+|.++++-++.+++. |++...++.+++++.+ |.|++.-.+.-. .++ .++..+.|..+|
T Consensus 267 ~~~~l~~al~Rvs~ls~~~~~~~v~l~~~~~~l~l~a~~~e~g~a~e~l~~~----------~~~-Ge~~~I~FN~~Y-- 333 (378)
T 2avt_A 267 NTQSLRHAMERAFLISNATQNGTVKLEITQNHISAHVNSPEVGKVNEDLDIV----------SQS-GSDLTISFNPTY-- 333 (378)
T ss_dssp EHHHHHHHHHHHHHHHTTSTTCCEEEEEETTEEEEEEEETTTEEEEEECCCS----------EEE-ECCEEEEECHHH--
T ss_pred EHHHHHHHHHHHHHHhccCCCceEEEEEeCCEEEEEEeCCCCceeEEEEeee----------eec-CCeEEEEEcHHH--
Confidence 356899999999998865 9999999999999987 778765433100 111 122344555555
Q ss_pred cccCCCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEee
Q psy2363 76 NFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAP 149 (156)
Q Consensus 76 ~~~k~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~-~Pl~v~f~i~~~G~l~~yLAP 149 (156)
|....++.. +++|.|.|... .|+.++.. ++.+...|+|.|
T Consensus 334 --------------------------------L~d~L~~~~-~~~v~l~~~~~~~p~~i~~~-~~~~~~~ylvmP 374 (378)
T 2avt_A 334 --------------------------------LIESLKAIK-SETVKIHFLSPVRPFTLTPG-DEEESFIQLITP 374 (378)
T ss_dssp --------------------------------HHHHHHTCC-SSEEEEEECCTTSCEEEEET-TCCSEEEEEECC
T ss_pred --------------------------------HHHHHhcCC-CCEEEEEECCCCCCEEEEcC-CCCCceEEEEEe
Confidence 999999988 89999999997 89999876 333378999999
No 25
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=98.12 E-value=3.1e-05 Score=66.06 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=77.0
Q ss_pred CcHHHHHHHHHHhccCC----eEEEEEeCCeEEEEEee-cceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeeccc
Q psy2363 2 PSGEFARICRDLAQFGE----SINISCTKEGVKFSATG-DIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLN 76 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd----~v~i~~~~~~v~f~~~g-d~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~ 76 (156)
+..+|.++++-++.+++ .|++...++.+.+++.+ |.|++.-.+.-.. + .++..+.|..+|
T Consensus 259 ~~~~l~~al~Rvsils~~~~~~v~l~~~~~~l~i~a~~~e~g~a~e~l~~~~-----------~-Ge~~~I~fN~~Y--- 323 (366)
T 3d1g_A 259 GCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTY-----------S-GAEMEIGFNVSY--- 323 (366)
T ss_dssp EHHHHHHHHHHHHHTSCTTTCEEEEEEETTEEEEEEECTTCCEEEEEEECBC-----------C-SCCEEEEEEHHH---
T ss_pred EHHHHHHHHHHHHHHhcCCCceEEEEEeCCEEEEEEcCCCCceEEEEEEEEe-----------c-CCcEEEEEcHHH---
Confidence 35789999999999986 49999999999999987 7787764442110 0 122344555555
Q ss_pred ccCCCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEeec
Q psy2363 77 FAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAPK 150 (156)
Q Consensus 77 ~~k~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~-~Pl~v~f~i~~~G~l~~yLAPk 150 (156)
|....++.. +++|.|.|+.. .|+.++.. +++...|+|.|-
T Consensus 324 -------------------------------L~d~L~~~~-~~~v~l~~~~~~~p~~i~~~--~~~~~~ylvmP~ 364 (366)
T 3d1g_A 324 -------------------------------VLDVLNALK-CENVRMMLTDSVSSVQIEDA--ASQSAAYVVMPM 364 (366)
T ss_dssp -------------------------------HHHHHHHCC-SSEEEEEECCTTSCEEEEET--TEEEEEEEECCB
T ss_pred -------------------------------HHHHHhcCC-CCEEEEEECCCCCCEEEEcC--CCCceEEEEEEc
Confidence 999999988 99999999997 89999886 357899999993
No 26
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=97.82 E-value=1.8e-05 Score=61.12 Aligned_cols=47 Identities=34% Similarity=0.733 Sum_probs=33.7
Q ss_pred CccEEEEecCceeEEeeeeecccccCCCCCCcccccceEEEe--cCceeeeee
Q psy2363 54 EEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEM--QEPVSLNFA 104 (156)
Q Consensus 54 ~~~v~i~~~~~~~~~fs~k~~~~~~k~~~~~~~~~~~V~i~~--~~~V~l~Fa 104 (156)
++.+.|+++++++.+|+++|...++|+...++ .|+|.+ +-|+.++|-
T Consensus 106 ~~~~~i~~~~~~~~~fsl~yl~~~~ka~~~s~----~v~l~~~~~~Pl~~~~~ 154 (169)
T 3l0w_B 106 ETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSD----RVGIRLSSEAPALFQFD 154 (169)
T ss_dssp GGCBEEEESSCEEEEEEHHHHHHHGGGGGGCS----EEEEEECSSSCEEEEEE
T ss_pred ccceEEecCCcceEEEhHHHHHHHhccccCCC----eEEEEEcCCCCEEEEEE
Confidence 34788888888888888888888887665554 577777 445566666
No 27
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.69 E-value=3.9e-05 Score=61.46 Aligned_cols=26 Identities=38% Similarity=0.850 Sum_probs=12.3
Q ss_pred cEEEEecCceeEEeeeeecccccCCC
Q psy2363 56 AVTVEMQEPVSLNFACRYLLNFAKAA 81 (156)
Q Consensus 56 ~v~i~~~~~~~~~fs~k~~~~~~k~~ 81 (156)
.|.|+++++++.+|+++|+..++|+.
T Consensus 136 ~v~ie~~e~v~~~fsl~YL~~f~Ka~ 161 (200)
T 3pge_A 136 SIKLEMDQPVDLTFGAKYLLDIIKGS 161 (200)
T ss_dssp CBEEEESSCEEEEEEHHHHHHHGGGG
T ss_pred ceEEEeCCcceeeEhHHHHHHHhccc
Confidence 34444444444444444444444443
No 28
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=97.47 E-value=0.0013 Score=56.10 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=73.6
Q ss_pred CcHHHHHHHHHHhccCC-----eEEEEEeCCeEEEEEeecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeeccc
Q psy2363 2 PSGEFARICRDLAQFGE-----SINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLN 76 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd-----~v~i~~~~~~v~f~~~gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~ 76 (156)
+..+|..+++-++.+++ .|++...++.+++++.+|.|++.-.+ .++.+ |
T Consensus 260 ~r~~l~~al~Rvs~ls~e~~~~~V~l~~~~~~l~i~~~~~~g~a~E~i-------------~~~~~----------G--- 313 (371)
T 3t0p_A 260 NKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELRINSFIGSMNEDI-------------DIDKD----------G--- 313 (371)
T ss_dssp EHHHHHHHHHHHHTTCCC-CCCCEEEEEETTEEEEEEECSSEEEEEEE-------------ECEEE----------E---
T ss_pred EHHHHHHHHHHHHHhhccCCCceEEEEEeCCEEEEEEeCCCCcEEEEE-------------EEEec----------C---
Confidence 35789999999999874 49999999999999988877665333 11111 1
Q ss_pred ccCCCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeC-CCcEEEEEEeCCCeEEEEEEee-ccCC
Q psy2363 77 FAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSL-DVPLVVEFKIDDIGHIRYYLAP-KIES 153 (156)
Q Consensus 77 ~~k~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~-~~Pl~v~f~i~~~G~l~~yLAP-ki~~ 153 (156)
+|++..|=-+||....++.. +++|.|+|.. ..|+.++- ++....|.|.| |+.+
T Consensus 314 --------------------e~~~I~FN~~yLld~L~~~~-~~~v~l~~~~~~~p~~i~~---~~~~~~~lvMPvrl~~ 368 (371)
T 3t0p_A 314 --------------------KDIMIGFNPKFFIDALRVID-EEEVNLYMVNPKAPCFIKD---DEGKFIYLILPVNFNT 368 (371)
T ss_dssp --------------------CCEEEEECHHHHHHHHTTCC-CSEEEEEESCTTSCEEEEC---TTSCEEEEECCCCC--
T ss_pred --------------------CcEEEEEchHHHHHHHhCCC-CCeEEEEECCCCCcEEEEc---CCCCeEEEEcceeccc
Confidence 23444444555999999876 7899999976 47998864 45678999999 5543
No 29
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=96.99 E-value=0.023 Score=46.01 Aligned_cols=106 Identities=12% Similarity=0.190 Sum_probs=71.1
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeec--ceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATGD--IGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd--~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
.+..|+++++-++.+-+.+.+.++++++++.|.-. ..-+.+.|.... --..+|
T Consensus 13 ~a~~lk~ii~ai~~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~-------F~~y~~------------------ 67 (265)
T 3p91_A 13 EAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDA-------FDEFQC------------------ 67 (265)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSSEEEEEECGGG-------EEEEEC------------------
T ss_pred chHHHHHHHHHHHHHhceEEEEEeCCeEEEEEECCCcEEEEEEEEChhh-------ceEEEe------------------
Confidence 46789999999999999999999999999998733 333334432211 011222
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEe
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLA 148 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~-~Pl~v~f~i~~~G~l~~yLA 148 (156)
++++++...++.|..+.|.++-.+.|+|.+..+ -+|.+.|.=...+.+.|++.
T Consensus 68 ----------------d~~~~igi~l~~L~kiLk~~~~~d~v~i~~~~~~~~l~~~~e~~~~~~i~~~lr 121 (265)
T 3p91_A 68 ----------------LKPITLGINLTHLSKILKALDNDCGLILDVKKVDDAVLSITSEGTNKTMKFGLN 121 (265)
T ss_dssp ----------------SSCEEEEEEHHHHHHHHTTSCTTSEEEEEECSSSSEEEEEEEC--CCEEEEEEE
T ss_pred ----------------CCCeEEEEEHHHHHHHHhhcCCCCEEEEEEcCCCCeEEEEEEeCCCceEEEEEE
Confidence 234555555555777787777788999999875 47887776333344666664
No 30
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=96.56 E-value=0.075 Score=42.81 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=66.7
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEee-cceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATG-DIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~g-d~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
....|+++++-+ .+.+.++|.++++|+++.+.. ...-+.+.|....- -..+|+++
T Consensus 11 ~a~~l~~il~ai-~l~~ea~~~~s~~Gi~l~a~Ds~v~~v~l~l~~~~F-------~~Y~~~~~---------------- 66 (263)
T 3a1j_C 11 NVRNLSTILKAI-HFREHATCFATKNGIKVTVENAKCVQANAFIQAGIF-------QEFKVQEE---------------- 66 (263)
T ss_dssp CTHHHHHHHHTT-CSSSEEEEEEETTEEEEEEEETTTEEEEEEEEGGGS-------SEEEESSS----------------
T ss_pred CHHHHHHHHhhe-ecCcEEEEEEcCCeEEEEEEeCCEEEEEEEECHHHC-------ceEEEcCC----------------
Confidence 467899999999 999999999999999999984 12222333333221 12233322
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCC----ceEEEEe---eCCCcEEEEEEeCCCeE-EEEEE
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLS----NQVCLSM---SLDVPLVVEFKIDDIGH-IRYYL 147 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls----~~V~l~l---~~~~Pl~v~f~i~~~G~-l~~yL 147 (156)
.+++...+..|..+.|.++-. +.+++.| +.+-||.+.+.- .|. -+|-|
T Consensus 67 -----------------~~~~gi~l~~l~k~L~~~~~~~~~~d~~~l~i~~~~~~~~l~l~~e~--~~~~~~~~l 122 (263)
T 3a1j_C 67 -----------------SVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEE--GGVVTVCKI 122 (263)
T ss_dssp -----------------CEEEEEEHHHHHHHHTTTCSCCCTTCCCEEEEEECSTTCCEEEEEEE--TTEEEEEEE
T ss_pred -----------------CcEEEEEhHHHHHHHHHhcCCcCCCCceEEEEEECCCCCcEEEEEEe--CCeEEEEEE
Confidence 144455555577777777766 7667774 336899999883 453 44444
No 31
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=96.51 E-value=0.057 Score=43.34 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=70.1
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeec--ceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATGD--IGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd--~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
.+..|+++++-++.+-+.+.+.++++++++.|.-. .+-+.+.+....- -..+|
T Consensus 9 ~a~~lk~ii~ai~~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F-------~~y~~------------------ 63 (259)
T 3lx2_A 9 SAREFESLIATLEKFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLF-------SKYSV------------------ 63 (259)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGS-------SEEEE------------------
T ss_pred cHHHHHHHHHHHHHHhceEEEEEecCeEEEEEECCCCEEEEEEEEChHhc-------EEEEc------------------
Confidence 36789999999999999999999999999998733 3333333332210 01222
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccC
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 152 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~ 152 (156)
++++++...++.|..+.|.++-.+.|+|....+-+|.+.|. +.+...|++ |-++
T Consensus 64 ----------------~~~~~igi~l~~L~kiLk~~~~~d~v~i~~~~~~~l~~~~e--~~~~~~~~~-rLid 117 (259)
T 3lx2_A 64 ----------------ESEEAIAFDLKRFLKVLKLARSRDTLVLRKGGENFLEVGLL--GDENTWFKL-PLID 117 (259)
T ss_dssp ----------------SSCEEEEEEHHHHHHHHTTCCTTCEEEEEECSSSEEEEEEE--SSSEEEEEE-ECCC
T ss_pred ----------------CCCEEEEEEHHHHHHHHHhcCCCCEEEEEECCCCEEEEEEe--cCceEEEEE-Eeec
Confidence 23455555555577777777777899999444577777665 444455555 4444
No 32
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=96.45 E-value=0.13 Score=40.75 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=68.8
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeec--ceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATGD--IGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd--~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
.+..|+++++-++.+-+.+.+.++++++++.|.-. .+-+.+.+.... --..+|
T Consensus 8 ~a~~~k~i~~ai~~i~~~~~~~~~~~gl~~~A~D~~rval~~~~l~~~~-------F~~y~~------------------ 62 (245)
T 3fds_D 8 DAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSY-------FEGFEV------------------ 62 (245)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGG-------EEEEEE------------------
T ss_pred cHHHHHHHHHHHHHHhceEEEEEcCCeEEEEEECCCCEEEEEEEEChHh-------CEEEEe------------------
Confidence 46789999999999999999999999999998733 233333332211 011222
Q ss_pred CCCCCcccccceEEEecCcee-eeeehhhHHhhhhhcCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeeccCC
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVS-LNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIES 153 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~-l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~Pl~v~f~i~~~G~l~~yLAPki~~ 153 (156)
+.+++ ....+..|..+.|.++-.+.|+|.+ .+-+|.+.|. +.+ .+-|.-+-++-
T Consensus 63 ----------------~~~~~i~gi~l~~l~kiL~~~~~~d~v~i~~-~~~~l~~~~~--~~~-~~~~~~rLid~ 117 (245)
T 3fds_D 63 ----------------SQEKEIIGFKLEDVNDILKRVLKDDTLILSS-NESKLTLTFD--GEF-TRSFELPLIQV 117 (245)
T ss_dssp ----------------SSSCEEEEEEHHHHHHHHTTCCTTCEEEEEE-CSSEEEEEEE--SSS-EEEEEEECCCC
T ss_pred ----------------CCccEEEEEEHHHHHHHHHhcCCCCEEEEEE-eCCEEEEEEe--cCc-eEEEEEEeecC
Confidence 22344 4555455777777666678999999 4556666654 444 44555555553
No 33
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=96.42 E-value=0.15 Score=40.36 Aligned_cols=111 Identities=12% Similarity=0.181 Sum_probs=72.6
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecc--eeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATGDI--GSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~--~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
.+..|++++..+..+-+.+.+++++++++|.|.... +-+.+.+.... | .+|
T Consensus 8 ~~~~~k~i~~~i~~il~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~--------------------f-~~y------ 60 (261)
T 1u7b_A 8 QGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEG--------------------F-DTY------ 60 (261)
T ss_dssp CTHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGG--------------------S-SEE------
T ss_pred chHHHHHHHHHHHHHhcEEEEEEeCCceEEEEECCCCEEEEEEEECHHh--------------------C-eEE------
Confidence 467899999999999999999999999999887432 22222221110 1 122
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeC-CCcEEEEEEeCCCeEEEEEEeeccCC
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSL-DVPLVVEFKIDDIGHIRYYLAPKIES 153 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~-~~Pl~v~f~i~~~G~l~~yLAPki~~ 153 (156)
++++++.....++.|..+.|.++-.+.|+|.+.. +-+|.+.+.=...|.++.|-.+-++-
T Consensus 61 --------------~~~~~i~~~i~l~~l~kil~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~ 121 (261)
T 1u7b_A 61 --------------RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDL 121 (261)
T ss_dssp --------------EESSCEEEEEEHHHHHHHHTTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCC
T ss_pred --------------EeCCCeEEEEEHHHHHHHHhcCCCCCEEEEEecCCCCEEEEEEEcCCCCeEEEEEEECccC
Confidence 2233455666655577777765557789999975 45777777644445555555555553
No 34
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=96.35 E-value=0.051 Score=47.09 Aligned_cols=101 Identities=23% Similarity=0.359 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHhccCC---eEEEEEeCCeEEEEEe-ecceeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccc
Q psy2363 2 PSGEFARICRDLAQFGE---SINISCTKEGVKFSAT-GDIGSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNF 77 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd---~v~i~~~~~~v~f~~~-gd~~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~ 77 (156)
+..+|..+++-++.+.+ .|++...++.+++++. .|.|++.-.+. ++. +|
T Consensus 282 ~r~~l~~al~Rvslls~~~~~V~l~~~~~~l~i~a~~~e~g~a~E~i~-------------~~~----------~G---- 334 (408)
T 3p16_A 282 DVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLV-------------VDY----------AG---- 334 (408)
T ss_dssp EHHHHHHHHHHHHTTCCSSCCEEEEEETTEEEEEEECSSSCEEEEEEE-------------CEE----------EE----
T ss_pred EHHHHHHHHHHHHhhhcCCceEEEEEeCCEEEEEEeCCCCceEEEEEE-------------EEE----------eC----
Confidence 35689999999999876 5999999999999987 56676653331 111 11
Q ss_pred cCCCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCC-CcEEEEEEeCCC---------e------
Q psy2363 78 AKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDI---------G------ 141 (156)
Q Consensus 78 ~k~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~-~Pl~v~f~i~~~---------G------ 141 (156)
++++..|=-+||....++.. +++|.|.|... .|+.++=.-++. |
T Consensus 335 -------------------e~l~I~FN~~YLlD~L~~i~-~e~V~l~~~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~ 394 (408)
T 3p16_A 335 -------------------EPLTIAFNPTYLTDGLSSLR-SERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVS 394 (408)
T ss_dssp -------------------SCCEEEECHHHHHHHHHHSC-SSEEEEEESCTTSCEEEEEECCC--------------CCS
T ss_pred -------------------CcEEEEEeHHHHHHHHhccC-CCeEEEEECCCCCcEEEEeCCCCccccccccccccccCCC
Confidence 23444444555999999877 78999999865 799996443221 1
Q ss_pred -EEEEEEee
Q psy2363 142 -HIRYYLAP 149 (156)
Q Consensus 142 -~l~~yLAP 149 (156)
..+|.|-|
T Consensus 395 ~~~~~limP 403 (408)
T 3p16_A 395 TDYVYLLMP 403 (408)
T ss_dssp SSEEEEECC
T ss_pred CcEEEEEEE
Confidence 57898888
No 35
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=96.32 E-value=0.12 Score=40.98 Aligned_cols=112 Identities=17% Similarity=0.286 Sum_probs=72.4
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecc--eeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATGDI--GSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~--~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
.+..|++++..+..+-+.+.++++++++++.|.... .-+.+.+... .| -+|
T Consensus 8 ~~~~~~~i~~~i~~i~~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~--------------------~F-~~y------ 60 (258)
T 1plq_A 8 EASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVE--------------------AF-QEY------ 60 (258)
T ss_dssp SHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGG--------------------GS-SEE------
T ss_pred chHHHHHHHHHHHHHhceEEEEEcCCceEEEEECCCcEEEEEEEECHH--------------------hC-cEE------
Confidence 467899999999999999999999999999887432 2222222211 01 122
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEeeccCCC
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAPKIESD 154 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~-~Pl~v~f~i~~~G~l~~yLAPki~~e 154 (156)
+++.++.....++.|..+.|.++-.+.|+|.+..+ -++.+.+.=...|.++.|--+-++-+
T Consensus 61 --------------~~~~~~~~~i~l~~l~kil~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~~ 122 (258)
T 1plq_A 61 --------------RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDID 122 (258)
T ss_dssp --------------CCSSCEEEEEEHHHHHHHTTCSTTTSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCC
T ss_pred --------------EeCCCeEEEEEHHHHHHHHhcCCCCCEEEEEecCCCCeEEEEEEcCCCCeEEEEEEEcccCC
Confidence 22234455566555666666554467899999764 57777776444566666666666543
No 36
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=96.11 E-value=0.22 Score=40.12 Aligned_cols=110 Identities=12% Similarity=0.226 Sum_probs=70.7
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecc--eeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATGDI--GSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~--~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
++..|+++++.+..+-+.+.+++++++++|.|.... .-+.+.+.... | .+|
T Consensus 28 ~~~~lk~ii~~~~~il~~v~~~~~~~gl~~vAtD~~rla~~~~~l~~~~--------------------f-~~y------ 80 (276)
T 2zvv_A 28 QGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEG--------------------F-EHY------ 80 (276)
T ss_dssp CTHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGG--------------------S-SEE------
T ss_pred ChHHHHHHHHHHHHHhceEEEEEECCeEEEEEECCCCEEEEEEEEChhh--------------------C-cEE------
Confidence 568899999999999999999999999999887432 22222221110 1 012
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeC-CCcEEEEEEeCCCeEEEEEEeeccC
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSL-DVPLVVEFKIDDIGHIRYYLAPKIE 152 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~-~~Pl~v~f~i~~~G~l~~yLAPki~ 152 (156)
+++.++.+...++.|..+.|.++-.+.|+|.+.. +-+|.+.+.=.+.+.++-|--+-++
T Consensus 81 --------------~~~~~i~~~i~l~~l~kilk~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rLid 140 (276)
T 2zvv_A 81 --------------RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMD 140 (276)
T ss_dssp --------------EESSCEEEEEEHHHHHHHHHTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCC
T ss_pred --------------EcCCCEEEEEEHHHHHHHHhhCCCCCeEEEEEcCCCCeEEEEEEeCCCceEEEEEEEccc
Confidence 2233455556655577777765557889999985 4577777754334445545455544
No 37
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=96.03 E-value=0.16 Score=40.79 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=67.8
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecc--eeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATGDI--GSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~--~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
.+..|+++++-++.+-+.++|.++++|+++.+.-.. .-+.+.|....- -..+|+
T Consensus 8 ~a~~lk~ii~ai~~lv~e~~~~~~~~Gi~l~amD~s~valv~l~l~~~~F-------~~Y~~d----------------- 63 (249)
T 3fds_C 8 NAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVL-------SEYSID----------------- 63 (249)
T ss_dssp CHHHHHHHHHHHTTTCSSEEEEECSSEEEEEEECTTSSEEEEEEEEGGGS-------SEEECS-----------------
T ss_pred chHHHHHHHHHHHHHhCeEEEEEcCCeEEEEEECCCcEEEEEEEECHHhC-------eEEECC-----------------
Confidence 467899999999999999999999999999986443 333333333211 122333
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhcC-CCceEEEEeeCCCcEEEEEEeCCCeEE-EEEE
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAP-LSNQVCLSMSLDVPLVVEFKIDDIGHI-RYYL 147 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~-ls~~V~l~l~~~~Pl~v~f~i~~~G~l-~~yL 147 (156)
+++++..-+..|..+.|.++ -.+++++. ...-+|.+.|.=..+|.. +|.|
T Consensus 64 -----------------~~~~~gvnl~~l~kiLk~~~~~~d~l~~~-~~~~~l~i~~e~~~~~~~~~~~l 115 (249)
T 3fds_C 64 -----------------SPTSVKLDVSSVKKILSKASSKKATIELT-ETDSGLKIIIRDEKSGAKSTIYI 115 (249)
T ss_dssp -----------------SCEEEEECHHHHHHHHTTCCCSCEEEEEE-ECSSEEEEEEEETTTCCEEEEEE
T ss_pred -----------------CCeEEEEEHHHHHHHHHhhCCCCCEEEEe-cCCCEEEEEEEeCCCCEEEEEEE
Confidence 34455555555888888887 66655554 244578888764435655 4444
No 38
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=95.98 E-value=0.1 Score=42.78 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecce---eEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 4 GEFARICRDLAQFGESINISCTKEGVKFSATGDIG---SANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 4 ~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~---~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
..|++++.-++.+++.+.|.++++++.|.+.++.. -.-+..-.. +..=-.|.+++
T Consensus 15 ~~lkki~~ai~~L~k~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~---------------~~~F~~Y~~~s------- 72 (281)
T 3a1j_B 15 NHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ---------------ENFFNEFQMEG------- 72 (281)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECSSEEEEEECCCC--CCCEEEEEEEG---------------GGTCSEEEEEC-------
T ss_pred HHHHHHHHHHHHHhCEEEEEEcCCEEEEEECCCCCCCeEEEEEEeeh---------------hcCCCCeEEee-------
Confidence 47999999999999999999999999999976522 111111111 00000122221
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCCC-c-EEEEEE
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDV-P-LVVEFK 136 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~~-P-l~v~f~ 136 (156)
... -+++|.+.+.+.+|....|.+.-++.++|++..+- | |.+++.
T Consensus 73 ---~~~--------~~n~I~l~v~~~~L~k~Lk~a~n~~~~~ikL~k~~~p~L~fe~~ 119 (281)
T 3a1j_B 73 ---VSA--------ENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVE 119 (281)
T ss_dssp ---SSS--------TTCCEEEEEEHHHHHHHGGGGGGEEEEEEEEECSSSCEEEEEEE
T ss_pred ---ccC--------CCCEEEEEEeHHHHHHHHHhcCCCCeEEEEeccCCCCEEEEEEE
Confidence 000 02577778887778888888888999999987764 5 444444
No 39
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=95.69 E-value=0.36 Score=37.91 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEee
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATG 35 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~g 35 (156)
.+..|++++..+..+-+-+.++++++++++.|..
T Consensus 9 ~~~~~~~i~~~i~~~l~gv~~~~~~~~l~~vatD 42 (249)
T 1iz5_A 9 GAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMD 42 (249)
T ss_dssp CHHHHHHHHHHHTSSCSEEEEEECSSEEEEEEEC
T ss_pred chHHHHHHHHHHHHHhcEEEEEEeCCeEEEEEEC
Confidence 4678999999999999999999999999998874
No 40
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=94.66 E-value=1.2 Score=34.75 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEee
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATG 35 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~g 35 (156)
++..|+++++.+..+-+-+.++++++++++.|..
T Consensus 7 ~~~~lk~~i~~~~~~l~gv~~~~~~~~l~~vatD 40 (246)
T 3aiz_C 7 DADAFSYIFRTLEEFIDEITLDFTSDGLKIRGID 40 (246)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEEECSSEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhcEEEEEEcCCeEEEEEEC
Confidence 4678999999999999999999999999998873
No 41
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=94.44 E-value=0.73 Score=36.08 Aligned_cols=109 Identities=12% Similarity=0.138 Sum_probs=68.4
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecc--eeEEEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccC
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATGDI--GSANIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAK 79 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~--~~~~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k 79 (156)
.+..|++++..+..+-+-+.++++++++++.|.... +-+.+.+.... --.|.
T Consensus 8 ~~~~~k~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~-----------------f~~y~--------- 61 (248)
T 3aiz_A 8 SAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEY-----------------LEDYT--------- 61 (248)
T ss_dssp CHHHHHHHHTTCTTCCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGG-----------------CEEEE---------
T ss_pred chHHHHHHHHHHHHHHheEEEEEccCcEEEEEECCCCEEEEEEEECHHh-----------------CceEE---------
Confidence 467899999999999999999999999999886332 22233221100 01122
Q ss_pred CCCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEeeccC
Q psy2363 80 AAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAPKIE 152 (156)
Q Consensus 80 ~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls~~V~l~l~~~-~Pl~v~f~i~~~G~l~~yLAPki~ 152 (156)
++.++.....++.|..+.+.+ -.+.|+|.++.+ -++.+.|.=...|..+-+..+-++
T Consensus 62 ---------------~~~~i~~~~~l~~l~kil~~~-~~~~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlid 119 (248)
T 3aiz_A 62 ---------------IDKPLGIKININDLKKILGKA-KSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEK 119 (248)
T ss_dssp ---------------CSSCEEEEEEHHHHHHHHHTC-SSTTCEEEEEECSSEEEEEEEETTTTEEEEEEEECEE
T ss_pred ---------------cCCCeEEEEEHHHHHHHHhhc-CCCEEEEEEeCCCCeEEEEEEeCCCCEEEEEEEEccc
Confidence 222344445544455555543 367799999764 467777765446666666665554
No 42
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=93.95 E-value=0.68 Score=37.16 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeE--EEEEeecCCCCCCCccEEEEecCceeEEeeeeecccccCC
Q psy2363 3 SGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSA--NIKLAQTGNVDKEEEAVTVEMQEPVSLNFACRYLLNFAKA 80 (156)
Q Consensus 3 s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~--~i~l~~~~~~~~~~~~v~i~~~~~~~~~fs~k~~~~~~k~ 80 (156)
...|++++.-|+.+++.+.|+++++++++.|-.....+ .+.|....=. ..+++.+
T Consensus 10 ~~~~~k~i~als~l~~e~~~~~~~~gl~l~a~d~S~va~v~l~~~~~fF~-------~Y~~~~~---------------- 66 (266)
T 3a1j_A 10 VKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQ-------QYQAATP---------------- 66 (266)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSCEEEEEEECGGGSS-------EEECCCS----------------
T ss_pred HHHHHHHHHHHHhhCCcEEEEEccCcEEEEEEcCcccEEEEEEEchHhhh-------heecCCC----------------
Confidence 46799999999999999999999999999998654333 3444332110 1122100
Q ss_pred CCCCcccccceEEEecCceeeeeehhhHHhhhhhcCCC----ceEEEEeeCCC-cEEEEEEeCCCeEEEEEEeecc
Q psy2363 81 APLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLS----NQVCLSMSLDV-PLVVEFKIDDIGHIRYYLAPKI 151 (156)
Q Consensus 81 ~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~ls----~~V~l~l~~~~-Pl~v~f~i~~~G~l~~yLAPki 151 (156)
-.+++++...+++|..+.|.++-- +.++|++..+- =|.+.|.-.. |.++=|--|-+
T Consensus 67 --------------~~~~~~~gv~~k~l~kilk~~~~~d~~vd~~~i~~~~~~~~l~~~~~~~~-~~~k~~~l~l~ 127 (266)
T 3a1j_A 67 --------------GQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKF-GVRKTHNLSFQ 127 (266)
T ss_dssp --------------SSCCCCEEEEHHHHHHHHCCHHHHHHHEEEEEEECCTTCSEEEEEEEEGG-GCEEEEEEECE
T ss_pred --------------CCCcEEEEEEhhHHHHHhCCcccccccceEEEEEEcCCCceEEEEEEccC-CceEEEEEEEE
Confidence 012455566655566666654422 58888885433 2666665553 54544443343
No 43
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=93.49 E-value=1.2 Score=34.68 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEee
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATG 35 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~g 35 (156)
.+..|++++..+..+-+-+.++++++++++.|..
T Consensus 7 ~~~~~k~i~~~i~~~l~gv~~~~~~~~l~~vatD 40 (245)
T 1ud9_A 7 DVRDLKAIIQALLKLVDEALFDIKPEGIQLVAID 40 (245)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEETTEEEEEEEC
T ss_pred chHHHHHHHHHHHHHhceEEEEEcCCeEEEEEEC
Confidence 4678999999999999999999999999998873
No 44
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=93.47 E-value=1.6 Score=33.90 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEee
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATG 35 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~g 35 (156)
.+..|++++..+..+-+-+.++++++++++.|..
T Consensus 7 ~a~~~~~i~~~i~~~l~gv~~~~~~~~l~~vatD 40 (244)
T 2ijx_A 7 DVRVLKDIIQALARLVDEAVLKFKQDSVELVALD 40 (244)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEECSSEEEEEEEC
T ss_pred chHHHHHHHHHHHHHhceEEEEEecCeEEEEEEC
Confidence 4678999999999999999999999999998873
No 45
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=93.13 E-value=0.19 Score=39.93 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEee
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATG 35 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~g 35 (156)
.++.|+++++-++.+-+.+.+.++++++++.|.-
T Consensus 7 ~a~~~k~i~~ai~~i~~~v~~~~~~~gl~~~A~D 40 (247)
T 3ifv_A 7 SAATLRDALDSVSVLVDECKIRLNEESLSIRAVD 40 (247)
T ss_dssp CHHHHHHHHHHHHTTCSSEEEC---CEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhcEEEEEEeCCeEEEEEEC
Confidence 4678999999999999999999999999999864
No 46
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=92.89 E-value=2.7 Score=32.78 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHhccCCeEEEEEeCCeEEEEEee
Q psy2363 2 PSGEFARICRDLAQFGESINISCTKEGVKFSATG 35 (156)
Q Consensus 2 ~s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~g 35 (156)
.+..|++++..+..+-+-+.++++++++++.|..
T Consensus 7 ~~~~~~~i~~~i~~~l~gv~~~~~~~~l~~vatD 40 (245)
T 1rwz_A 7 TGELLKTVTRAIVALVSEARIHFLEKGLHSRAVD 40 (245)
T ss_dssp EHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEC
T ss_pred chHHHHHHHHHHHHHhceEEEEEcCCeEEEEEEC
Confidence 3578999999999999999999999999998864
No 47
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=80.28 E-value=4.8 Score=33.12 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeE--EEEEe
Q psy2363 4 GEFARICRDLAQFGESINISCTKEGVKFSATGDIGSA--NIKLA 45 (156)
Q Consensus 4 ~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~--~i~l~ 45 (156)
..|.|++.-|+.|||.+.|+++++++++++-....++ .+.+.
T Consensus 11 K~f~kai~~LskigdEl~~e~~~dgL~LravNsSrSA~~~~~f~ 54 (296)
T 3g65_A 11 KVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFA 54 (296)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSCEEEEEEET
T ss_pred HHHHHHHHHHHhhCceEEEEEcCCeEEEEEECCcceEEEEEEeC
Confidence 5799999999999999999999999999998654443 44443
No 48
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=80.18 E-value=1.9 Score=31.78 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=18.0
Q ss_pred CCcHHHHHHHHH-------HhccCCeEEEEEeCCeEEE
Q psy2363 1 MPSGEFARICRD-------LAQFGESINISCTKEGVKF 31 (156)
Q Consensus 1 m~s~~f~~i~rd-------l~~~gd~v~i~~~~~~v~f 31 (156)
|+.+.|.+.+++ ..++|+.|.|+..++.|.+
T Consensus 28 ~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V 65 (121)
T 3izc_W 28 FDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTV 65 (121)
T ss_dssp CCSHHHHHHHHHHHHHHSSSSSCCCCEEEEECSSEEEE
T ss_pred ecHHHHHHHHHHHheecCcccccCceEEEEEcCCEEEE
Confidence 455666666665 4456666666655554444
No 49
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M
Probab=79.42 E-value=1.9 Score=31.66 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=13.7
Q ss_pred eehhhHHhhhh----hcCCCceEEEEee
Q psy2363 103 FACRYLLNFAK----AAPLSNQVCLSMS 126 (156)
Q Consensus 103 Fa~~~L~~f~K----aa~ls~~V~l~l~ 126 (156)
|+-|||+|++| -..|.|-+.+-=+
T Consensus 73 fSKRYLKYLTKKyLKK~~LRDwlRVVA~ 100 (118)
T 4a18_M 73 FSKRYLKYLTKKYLKKQDLRNYLYVTSS 100 (118)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTTEEEEEE
T ss_pred cchHHHHHHHHHHhhhccccceEEEEec
Confidence 34444877764 4567776555433
No 50
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=75.58 E-value=34 Score=28.44 Aligned_cols=34 Identities=6% Similarity=0.083 Sum_probs=27.0
Q ss_pred CCcHHHHHHHHHHhccCCe---------EEEEEeCCeEEEEEe
Q psy2363 1 MPSGEFARICRDLAQFGES---------INISCTKEGVKFSAT 34 (156)
Q Consensus 1 m~s~~f~~i~rdl~~~gd~---------v~i~~~~~~v~f~~~ 34 (156)
+++.+|+++++-..-.... |.+++.++.+++.|.
T Consensus 141 i~~~~L~~~I~r~~~a~s~~e~r~~l~GV~l~~~~~~l~~vAt 183 (378)
T 1vpk_A 141 VDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVAS 183 (378)
T ss_dssp EEHHHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETTEEEEEEE
T ss_pred ECHHHHHHHHhheEEEEECCCCcceeeEEEEEEECCEEEEEEe
Confidence 3578899999988766522 889999999999876
No 51
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_W
Probab=73.49 E-value=3.9 Score=30.49 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=15.1
Q ss_pred CCcHHHHHHHHH--------HhccCCeEEEEEeCCeEE
Q psy2363 1 MPSGEFARICRD--------LAQFGESINISCTKEGVK 30 (156)
Q Consensus 1 m~s~~f~~i~rd--------l~~~gd~v~i~~~~~~v~ 30 (156)
|+.+.|.+.+++ ..++|+.|.|+..++.|.
T Consensus 36 ~d~a~fekfL~erIKV~nGk~gnLg~~V~i~~~k~ki~ 73 (130)
T 3iz5_W 36 MEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVT 73 (130)
T ss_dssp CCSHHHHHHHHHHHHHHSSCCSSSCCCEEEEECSSCEE
T ss_pred ecHHHHHHHHHhheeecCCcccccCCceEEEEeCCEEE
Confidence 445556666555 223455555555444433
No 52
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=24.58 E-value=90 Score=26.27 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=48.1
Q ss_pred CccEEEEecC-ceeEEeeeeecccccCCCCCCcccccceEEEecCceeeeeehhhHHhhhhhcC---CCceEEEEee-CC
Q psy2363 54 EEAVTVEMQE-PVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAP---LSNQVCLSMS-LD 128 (156)
Q Consensus 54 ~~~v~i~~~~-~~~~~fs~k~~~~~~k~~~~~~~~~~~V~i~~~~~V~l~Fa~~~L~~f~Kaa~---ls~~V~l~l~-~~ 128 (156)
++.+.|.... .|++-|++.. .++-...||--+|..|..|.. +...=.+-++ .+
T Consensus 164 ~E~iyI~p~~DrVTVIFst~F----------------------kDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~e 221 (317)
T 3dwl_D 164 EETIVLWPEHDRVTVVFSTKF----------------------REETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRD 221 (317)
T ss_dssp SCCEEEEECSSEEEEEEEECC----------------------SSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSS
T ss_pred CceEEEEecCCeEEEEEEEEe----------------------cCCCceeehHHHHHHHHHHhhccccCCCCcccccCCC
Confidence 3567777654 4788898886 344456677788999997764 4333344455 46
Q ss_pred CcEEEEE----Ee-CCCeEEEEEEeecc
Q psy2363 129 VPLVVEF----KI-DDIGHIRYYLAPKI 151 (156)
Q Consensus 129 ~Pl~v~f----~i-~~~G~l~~yLAPki 151 (156)
-||.|+= .. ++.|+|+|-|=||=
T Consensus 222 PPlEL~~~~~~~~~~n~gyVTFvLFpRH 249 (317)
T 3dwl_D 222 PPLEIRDIQGIQKGDDFGFVTFVLFERH 249 (317)
T ss_dssp CCSCCCSCC-------CEEEEEEEEGGG
T ss_pred CChHHhCCCccccCCCeeEEEEEechHh
Confidence 6665432 12 24799999999973
No 53
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core flanked by 2 SETS of 3 helices and another 2 SETS of helices; 2.05A {Escherichia coli O157}
Probab=21.54 E-value=1.7e+02 Score=21.76 Aligned_cols=37 Identities=14% Similarity=0.378 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeE
Q psy2363 3 SGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSA 40 (156)
Q Consensus 3 s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~ 40 (156)
.+.|..++.++..+| .|.+-+.+.+..+.-.|.+-++
T Consensus 44 ~~~~~~lL~~l~~~G-~vm~iv~N~g~V~E~~G~~~~~ 80 (164)
T 2ovi_A 44 GDKFDTVWDTVCEWG-NVTTLVHTADVILEFSGELPSG 80 (164)
T ss_dssp GGGHHHHHHHHHTSC-EEEEEEECSSEEEEEEEECCCE
T ss_pred HHHHHHHHHHhhhcC-cEEEEEcCCCEEEEEEcccCCc
Confidence 458999999999999 8888888899999989887444
No 54
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=20.37 E-value=1.7e+02 Score=22.06 Aligned_cols=37 Identities=8% Similarity=0.320 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCeEEEEEeecceeE
Q psy2363 3 SGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSA 40 (156)
Q Consensus 3 s~~f~~i~rdl~~~gd~v~i~~~~~~v~f~~~gd~~~~ 40 (156)
.+.|..++..+...| .|.+-+.+.+..+.-.|.+-++
T Consensus 45 ~~~~~~lL~~l~~~G-~Vm~iv~N~g~V~E~~G~~~~~ 81 (174)
T 2ph0_A 45 GDRFDQVWDTIATWG-EVTLISHTADAILEFKSELPTG 81 (174)
T ss_dssp GGGHHHHHHHHTTSC-CEEEEEECSSEEEEEEECCCCE
T ss_pred hHhHHHHHHHhhhcC-cEEEEEcCCCEEEEEEeeecCc
Confidence 458999999999999 8888888899999999987444
Done!