RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2363
(156 letters)
>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen
(PCNA) {Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 121 bits (304), Expect = 8e-37
Identities = 83/151 (54%), Positives = 99/151 (65%), Gaps = 34/151 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
MPSGEFARICRDL+ G+++ ISC K+GVKFSA+G++G+ NIKL+QT NVDK
Sbjct: 13 MPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDK-------- 64
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
EEEAVT+EM EPV L FA RYL F KA PLS+
Sbjct: 65 --------------------------EEEAVTIEMNEPVQLTFALRYLNFFTKATPLSST 98
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 151
V LSMS DVPLVVE+KI D+GH++YYLAPKI
Sbjct: 99 VTLSMSADVPLVVEYKIADMGHLKYYLAPKI 129
>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen
(PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 132
Score = 117 bits (295), Expect = 2e-35
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 35/155 (22%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
+PS EF++I RDL+Q +SINI TKE +KF A GDIGS ++ + +++ E ++ +E
Sbjct: 13 LPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLE 72
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
M +PV L F +YLL+ K + LS++ V + +
Sbjct: 73 MDQPVDLTFGAKYLLDIIKGSSLSDR----VGIRLSS----------------------- 105
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 155
+ P + +F + G ++++LAPK ++
Sbjct: 106 -------EAPALFQFDLKS-GFLQFFLAPKFNDEE 132
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen
(PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 122
Score = 107 bits (269), Expect = 1e-31
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 43/154 (27%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
M +GEF + + + + KEG + A GD+ S + +T ++
Sbjct: 11 MDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSM 70
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
F+ YL F K A +
Sbjct: 71 ------------------------------------------FSVDYLKEFCKVAGSGDL 88
Query: 121 VCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIES 153
+ + + + P+ + F++ + Y LAP+IES
Sbjct: 89 LTIHLGTNYPVRLVFELVGGRAKVEYILAPRIES 122
>d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen
(PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Length = 119
Score = 103 bits (258), Expect = 6e-30
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 40/151 (26%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
+ + ++A+ +++ IS +E V G+
Sbjct: 8 INASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGENKVEVE------------------ 49
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
S +E + S + YL + LS+
Sbjct: 50 ----------------------FSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKLSDY 87
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 151
V ++ + P+ +EF ++ G + Y LAPK+
Sbjct: 88 VKVAFADQKPMQLEFNMEGGGKVTYLLAPKL 118
>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen
(PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 121
Score = 101 bits (253), Expect = 3e-29
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 39/150 (26%)
Query: 1 MPSGEFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTGNVDKEEEAVTVE 60
+ + + +SI + A G+ IK
Sbjct: 11 VLGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIK----------------- 53
Query: 61 MQEPVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNFACRYLLNFAKAAPLSNQ 120
L+ ++E + +E+QE + YL + K +++
Sbjct: 54 ----------------------LTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADE 91
Query: 121 VCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 150
V + ++P+ +E+ I D G + + LAP+
Sbjct: 92 VTIKFGNEMPMQMEYYIRDEGRLTFLLAPR 121
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen
(PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Length = 119
Score = 24.7 bits (54), Expect = 3.4
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 5 EFARICRDLAQFGESINISCTKEGVKFSATGDIGSANIKLAQTG-NVDKEEEAVTVEMQE 63
+ I + L + + EG++ A I A+I L + + +E ++ E
Sbjct: 10 DLKAIIQALLKLVDEALFDIKPEGIQLVA---IDKAHISLIKIELPKEMFKE---YDVPE 63
Query: 64 PVSLNFACRYLLNFAKAAPLSNQEEEAVTVEMQEPVSLNF 103
F +Y+ KAA + +E + ++ P +
Sbjct: 64 EFKFGFNTQYMSKLLKAA----KRKEEIIIDADSPEVVKL 99
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen
(PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 23.6 bits (51), Expect = 7.8
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 3 SGEFARICRDLAQFGESINISCTKEGVKFSAT 34
+ EFA++ ++ + T++G+ A
Sbjct: 9 AKEFAQLIDTASKLIDEAAFKVTEDGISMRAM 40
>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment)
{Escherichia coli [TaxId: 562]}
Length = 410
Score = 24.4 bits (52), Expect = 8.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 125 MSLDVPLVVEFKI 137
LDVPL+VE
Sbjct: 390 TRLDVPLLVEVGS 402
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 539,024
Number of extensions: 22265
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 16
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.4 bits)