Query psy2364
Match_columns 119
No_of_seqs 39 out of 41
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 23:05:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09596 MamL-1: MamL-1 domain 100.0 9E-37 2E-41 204.8 1.6 61 6-66 1-61 (61)
2 PF04508 Pox_A_type_inc: Viral 60.9 5.1 0.00011 22.7 1.1 19 13-31 3-21 (23)
3 cd04446 DEP_DEPDC4 DEP (Dishev 21.9 86 0.0019 22.5 2.3 51 10-60 2-68 (95)
4 PF06441 EHN: Epoxide hydrolas 21.3 77 0.0017 22.8 2.0 20 8-27 7-26 (112)
5 cd04447 DEP_BRCC3 DEP (Disheve 20.4 1.4E+02 0.0029 21.7 3.1 51 10-60 4-69 (92)
6 PF11498 Activator_LAG-3: Tran 16.2 1.1E+02 0.0024 27.8 2.3 44 21-64 46-90 (468)
7 PRK12423 LexA repressor; Provi 15.8 1.2E+02 0.0026 23.1 2.1 19 5-23 4-22 (202)
8 PF06945 DUF1289: Protein of u 13.7 88 0.0019 19.6 0.7 17 5-21 34-50 (51)
9 COG2333 ComEC Predicted hydrol 13.5 65 0.0014 27.0 0.1 22 7-28 247-269 (293)
10 KOG3314|consensus 12.3 81 0.0018 25.8 0.3 17 16-33 139-155 (194)
No 1
>PF09596 MamL-1: MamL-1 domain; InterPro: IPR019082 This entry represents the N-terminal domain found in a family of neurogenic mastermind-like proteins (MAMLs), which act as critical transcriptional co-activators for Notch signaling [, ]. Notch receptors are cleaved upon ligand engagement and the intracellular domain of Notch shuttles to the nucleus. MAMLs form a functional DNA-binding complex with the cleaved Notch receptor and the transcription factor CSL, thereby regulating transcriptional events that are specific to the Notch pathway. MAML proteins may also play roles as key transcriptional co-activators in other signal transduction pathways as well, including: muscle differentiation and myopathies (MEF2C) [], tumour suppressor pathway (p53) [] and colon carcinoma survival (beta-catenin) []. MAML proteins could mediate cross-talk among the various signaling pathways and the diverse activities of the MAML proteins converge to impact normal biological processes and human diseases, including cancers. The N-terminal domain of MAML proteins adopt an elongated kinked helix that wraps around ANK and CSL forming one of the complexes in the build-up of the Notch transcriptional complex for recruiting general transcription factors. This N-terminal domain is responsible for its interaction with the ankyrin repeat region of the Notch proteins NOTCH1 [], NOTCH2 [], NOTCH3 [] and NOTCH4. It forms a DNA-binding complex with Notch proteins and RBPSUH/RBP-J kappa/CBF1, and also binds CREBBP/CBP [] and CDK8 []. The C-terminal region is required for transcriptional activation.; GO: 0003713 transcription coactivator activity, 0007219 Notch signaling pathway, 0045944 positive regulation of transcription from RNA polymerase II promoter, 0016607 nuclear speck; PDB: 3NBN_F 2F8X_M 3V79_M.
Probab=100.00 E-value=9e-37 Score=204.82 Aligned_cols=61 Identities=56% Similarity=0.831 Sum_probs=53.0
Q ss_pred CCchhHHHHHHHHHHHHhhhhcCCcchhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhccC
Q psy2364 6 PPKRQAVVDRLRRRIENYRRHQSDCVPRYDHSFNGLVERDIQETLLLKQKYLESKAKRSKN 66 (119)
Q Consensus 6 ~pkhsaVVeRLRrRIE~cRrHh~~Ce~RYeq~~ae~~EqerqeT~~L~QR~le~KaKKs~K 66 (119)
||+|||||||||+|||+||+||+||++||+++++++||+|||+|++|+||||++||||++|
T Consensus 1 P~kh~avveRLRrRIE~~Rrhh~~C~~Rye~~~~~~~E~erq~T~~L~qr~l~~kakr~~k 61 (61)
T PF09596_consen 1 PPKHSAVVERLRRRIELCRRHHNDCESRYEQTQAERCEQERQETLALHQRVLEGKAKRSAK 61 (61)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC----
T ss_pred CcchhHHHHHHHHHHHHHHhhhccchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 7999999999999999999999999999999999999999999999999999999999886
No 2
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=60.94 E-value=5.1 Score=22.67 Aligned_cols=19 Identities=42% Similarity=0.837 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhcCCcc
Q psy2364 13 VDRLRRRIENYRRHQSDCV 31 (119)
Q Consensus 13 VeRLRrRIE~cRrHh~~Ce 31 (119)
|+|||.||..--+--++|.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7899999987766666653
No 3
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=21.90 E-value=86 Score=22.50 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhhhhc-----CCcchhhhhhhhh-----------hHHHHHHHHHHHHHHHhhhh
Q psy2364 10 QAVVDRLRRRIENYRRHQ-----SDCVPRYDHSFNG-----------LVERDIQETLLLKQKYLESK 60 (119)
Q Consensus 10 saVVeRLRrRIE~cRrHh-----~~Ce~RYeq~~ae-----------~~EqerqeT~~L~QR~le~K 60 (119)
+.||+.||..|+.=+|.+ .+|..=.|.+-=. -++..|++++.|-|.+++.+
T Consensus 2 n~ii~~~r~~v~ikdRr~~lk~y~~CF~GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~g 68 (95)
T cd04446 2 NSIIDALQTQVEVKKRRHNLKSYHDCFLGSEAVDVVLAHLMQNKYFGDVDVPRAKAVRLCQALMDCR 68 (95)
T ss_pred hHHHHHHHhcCcccceeeeceecccccchHHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHHHcC
Confidence 468999999999876654 6787766665411 23668999999999999764
No 4
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=21.28 E-value=77 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=13.1
Q ss_pred chhHHHHHHHHHHHHhhhhc
Q psy2364 8 KRQAVVDRLRRRIENYRRHQ 27 (119)
Q Consensus 8 khsaVVeRLRrRIE~cRrHh 27 (119)
--++.++.|++|++.+|-=.
T Consensus 7 v~~~~l~~l~~rl~~~r~p~ 26 (112)
T PF06441_consen 7 VPDEELDDLRQRLRATRLPD 26 (112)
T ss_dssp --HHHHHHHHHHHHHS----
T ss_pred CCHHHHHHHHHHHhccCCCC
Confidence 34688999999999999643
No 5
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=20.43 E-value=1.4e+02 Score=21.69 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhhhhc-----CCcchhhhhhhh--hhH--------HHHHHHHHHHHHHHhhhh
Q psy2364 10 QAVVDRLRRRIENYRRHQ-----SDCVPRYDHSFN--GLV--------ERDIQETLLLKQKYLESK 60 (119)
Q Consensus 10 saVVeRLRrRIE~cRrHh-----~~Ce~RYeq~~a--e~~--------EqerqeT~~L~QR~le~K 60 (119)
..||+.||..++.=||++ .+|..==|++-= +.+ |..|++|+.|.|++|+..
T Consensus 4 n~ii~~~r~g~~vk~rR~~lr~y~~CF~gsEAVDwL~~~l~~n~~fg~~vtR~~av~l~qkll~~h 69 (92)
T cd04447 4 NEVTELFRAGMPLRKHRQHFKSYENCFTASEAVDWLHELLRSNSNFGPEVTRQQTVQLLKKFLKNH 69 (92)
T ss_pred HHHHHHHHccCChHHHHHhcccCccccchHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHcC
Confidence 468899998888776543 455433222211 111 558999999999988654
No 6
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=16.24 E-value=1.1e+02 Score=27.77 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHhhhhcCCcchhhhhhhhhhHHHHHHHHHHHHHHHhh-hhhhhc
Q psy2364 21 ENYRRHQSDCVPRYDHSFNGLVERDIQETLLLKQKYLE-SKAKRS 64 (119)
Q Consensus 21 E~cRrHh~~Ce~RYeq~~ae~~EqerqeT~~L~QR~le-~KaKKs 64 (119)
|++|..-.---.||..+.+|...-+|--|..|.-||-| .+.||.
T Consensus 46 Elhrq~SqlA~e~y~~a~pemi~~~R~vta~Lf~RfTEdeeRKr~ 90 (468)
T PF11498_consen 46 ELHRQQSQLAKEKYAIALPEMINAQRAVTAELFTRFTEDEERKRA 90 (468)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHhhchHHHHHHH
Confidence 55666666666899999999999999999999999994 444443
No 7
>PRK12423 LexA repressor; Provisional
Probab=15.83 E-value=1.2e+02 Score=23.12 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=17.2
Q ss_pred CCCchhHHHHHHHHHHHHh
Q psy2364 5 LPPKRQAVVDRLRRRIENY 23 (119)
Q Consensus 5 ~~pkhsaVVeRLRrRIE~c 23 (119)
++|++..|+++|+..|+..
T Consensus 4 lt~~q~~il~~l~~~i~~~ 22 (202)
T PRK12423 4 LTPKRAAILAFIRERIAQA 22 (202)
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 6899999999999998865
No 8
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=13.74 E-value=88 Score=19.63 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHHHHHH
Q psy2364 5 LPPKRQAVVDRLRRRIE 21 (119)
Q Consensus 5 ~~pkhsaVVeRLRrRIE 21 (119)
-+..+++|+.+|+.|..
T Consensus 34 s~~er~~i~~~l~~R~~ 50 (51)
T PF06945_consen 34 SDDERRAILARLRARRA 50 (51)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 35568999999999864
No 9
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=13.49 E-value=65 Score=26.99 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=18.2
Q ss_pred CchhHHHHHHHHH-HHHhhhhcC
Q psy2364 7 PKRQAVVDRLRRR-IENYRRHQS 28 (119)
Q Consensus 7 pkhsaVVeRLRrR-IE~cRrHh~ 28 (119)
+-|++|++||.++ |..||--++
T Consensus 247 hPh~~Vl~rl~~~~~~v~rTd~~ 269 (293)
T COG2333 247 HPHQEVLERLQKRGIKVYRTDQQ 269 (293)
T ss_pred CCcHHHHHHHHhcCCeEEecCCC
Confidence 4589999999998 888887665
No 10
>KOG3314|consensus
Probab=12.30 E-value=81 Score=25.81 Aligned_cols=17 Identities=47% Similarity=0.774 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhcCCcchh
Q psy2364 16 LRRRIENYRRHQSDCVPR 33 (119)
Q Consensus 16 LRrRIE~cRrHh~~Ce~R 33 (119)
+|.=|-+ |+||++|+-|
T Consensus 139 ~r~~~k~-r~hhQeCVkr 155 (194)
T KOG3314|consen 139 LRGFIKL-RGHHQECVKR 155 (194)
T ss_pred Hhhhccc-chhhHHHHHH
Confidence 4444444 9999999866
Done!