Query psy2364
Match_columns 119
No_of_seqs 39 out of 41
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 23:05:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f8x_M MAM-1, mastermind-like 100.0 7.1E-37 2.4E-41 205.5 4.8 62 6-67 2-63 (63)
2 2fo1_D Protein LAG-3; beta-bar 26.4 44 0.0015 23.1 2.6 36 31-66 31-66 (85)
3 3iv1_A Tumor susceptibility ge 20.4 50 0.0017 22.3 1.8 13 9-21 5-17 (78)
4 3syn_E ATP-binding protein YLX 17.2 67 0.0023 17.4 1.5 18 31-48 3-20 (23)
5 2ljp_A Ribonuclease P protein 13.8 1.6E+02 0.0054 19.7 3.1 20 11-30 60-80 (119)
6 1d6t_A Ribonuclease P, RNAse P 12.1 1.2E+02 0.004 20.4 2.1 18 12-29 58-76 (117)
7 1nz0_A Ribonuclease P protein 12.1 1E+02 0.0035 20.6 1.8 23 13-35 61-84 (118)
8 1a6f_A RNAse P protein, ribonu 12.1 1.2E+02 0.004 20.5 2.0 18 12-29 59-77 (119)
9 2hh7_A Hypothetical protein CS 11.5 91 0.0031 22.3 1.4 51 1-52 1-58 (119)
10 4fdi_A N-acetylgalactosamine-6 11.2 1.1E+02 0.0037 24.6 1.9 20 7-26 433-452 (502)
No 1
>2f8x_M MAM-1, mastermind-like protein 1; notch, CSL, HES-1, ankyrin repeats, REL- homology region, transcription/DNA complex; 3.25A {Homo sapiens} PDB: 3nbn_C 3v79_M*
Probab=100.00 E-value=7.1e-37 Score=205.49 Aligned_cols=62 Identities=42% Similarity=0.651 Sum_probs=54.9
Q ss_pred CCchhHHHHHHHHHHHHhhhhcCCcchhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhccCC
Q psy2364 6 PPKRQAVVDRLRRRIENYRRHQSDCVPRYDHSFNGLVERDIQETLLLKQKYLESKAKRSKNK 67 (119)
Q Consensus 6 ~pkhsaVVeRLRrRIE~cRrHh~~Ce~RYeq~~ae~~EqerqeT~~L~QR~le~KaKKs~Kk 67 (119)
||||||||||||+|||+||+||+||++||+++++++||+|||+|++|+|||||+||||++||
T Consensus 2 ~Pkh~avvdRLRrRIE~~Rrhh~~C~~Rye~~~~~~~e~erq~T~~L~qr~le~kaKk~~k~ 63 (63)
T 2f8x_M 2 LPRHSAVMERLRRRIELCRRHHSTCEARYEAVSPERLELERQHTFALHQRCIQAKAKRAGKH 63 (63)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CcchhHHHHHHHHHHHHHHHhhccchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 67999999999999999999999999999999999999999999999999999999999985
No 2
>2fo1_D Protein LAG-3; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: a.137.14.1
Probab=26.40 E-value=44 Score=23.09 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=28.9
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhccC
Q psy2364 31 VPRYDHSFNGLVERDIQETLLLKQKYLESKAKRSKN 66 (119)
Q Consensus 31 e~RYeq~~ae~~EqerqeT~~L~QR~le~KaKKs~K 66 (119)
-..|+.+.++..--+|--|..|+.||-|---+|.-.
T Consensus 31 ~eky~k~rpe~ia~QRAVTahLfhRyTEDEERKR~E 66 (85)
T 2fo1_D 31 RANYEKARPEMIANQRAVTAHLFNRYTEDEERKRVE 66 (85)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 357999999999999999999999999554444333
No 3
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.43 E-value=50 Score=22.32 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHH
Q psy2364 9 RQAVVDRLRRRIE 21 (119)
Q Consensus 9 hsaVVeRLRrRIE 21 (119)
.+||=|.||||+-
T Consensus 5 lSAVeDKLRrrl~ 17 (78)
T 3iv1_A 5 ISAVSDKLRWRMK 17 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999999984
No 4
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=17.16 E-value=67 Score=17.39 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=13.0
Q ss_pred chhhhhhhhhhHHHHHHH
Q psy2364 31 VPRYDHSFNGLVERDIQE 48 (119)
Q Consensus 31 e~RYeq~~ae~~Eqerqe 48 (119)
.+||+|+...+..+|..+
T Consensus 3 mnrydqaatlrakmekre 20 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKRE 20 (26)
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 468998887777666554
No 5
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=13.79 E-value=1.6e+02 Score=19.75 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=15.0
Q ss_pred HHHHHHHHHH-HHhhhhcCCc
Q psy2364 11 AVVDRLRRRI-ENYRRHQSDC 30 (119)
Q Consensus 11 aVVeRLRrRI-E~cRrHh~~C 30 (119)
.+=+|++|+| |.||.|...-
T Consensus 60 V~RNRiKR~lRe~~R~~~~~l 80 (119)
T 2ljp_A 60 HERNRIKRLTRESFRLRQHEL 80 (119)
T ss_dssp HHHHHHHHHHHHHHTTCTTTS
T ss_pred hHHhHHHHHHHHHHHHHHhcC
Confidence 3347999999 8999876543
No 6
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit, hydrolase; NMR {Staphylococcus aureus} SCOP: d.14.1.2
Probab=12.13 E-value=1.2e+02 Score=20.39 Aligned_cols=18 Identities=33% Similarity=0.770 Sum_probs=14.1
Q ss_pred HHHHHHHHH-HHhhhhcCC
Q psy2364 12 VVDRLRRRI-ENYRRHQSD 29 (119)
Q Consensus 12 VVeRLRrRI-E~cRrHh~~ 29 (119)
+=+|++|+| |.||.|...
T Consensus 58 ~RNRiKR~lRE~~R~~~~~ 76 (117)
T 1d6t_A 58 LRNKIKRAIRENFKVHKSH 76 (117)
T ss_dssp HHHHHHHHHHHHHHHGGGT
T ss_pred HHhHHHHHHHHHHHHhhcc
Confidence 347899999 999988553
No 7
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=12.08 E-value=1e+02 Score=20.65 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=16.8
Q ss_pred HHHHHHHH-HHhhhhcCCcchhhh
Q psy2364 13 VDRLRRRI-ENYRRHQSDCVPRYD 35 (119)
Q Consensus 13 VeRLRrRI-E~cRrHh~~Ce~RYe 35 (119)
=+|++|+| |.||.|...-.+-|+
T Consensus 61 RNRiKR~lRE~~R~~~~~l~~g~d 84 (118)
T 1nz0_A 61 RNKLKRWVREIFRRNKGVIPKGFD 84 (118)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSSEE
T ss_pred HhHHHHHHHHHHHHHHhhcCCCcE
Confidence 37899999 999988765444444
No 8
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=12.07 E-value=1.2e+02 Score=20.54 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=14.1
Q ss_pred HHHHHHHHH-HHhhhhcCC
Q psy2364 12 VVDRLRRRI-ENYRRHQSD 29 (119)
Q Consensus 12 VVeRLRrRI-E~cRrHh~~ 29 (119)
+=+|++|+| |.||.|...
T Consensus 59 ~RNRiKR~lRE~~R~~~~~ 77 (119)
T 1a6f_A 59 MRNRIKRLIRQAFLEEKER 77 (119)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred hHhHHHHHHHHHHHHhhcc
Confidence 337899999 999988654
No 9
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=11.50 E-value=91 Score=22.26 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=28.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHh-------hhhcCCcchhhhhhhhhhHHHHHHHHHHH
Q psy2364 1 MTEALPPKRQAVVDRLRRRIENY-------RRHQSDCVPRYDHSFNGLVERDIQETLLL 52 (119)
Q Consensus 1 Mgd~~~pkhsaVVeRLRrRIE~c-------RrHh~~Ce~RYeq~~ae~~EqerqeT~~L 52 (119)
|+..++..+..++.|||| ||+= =.--.+|..=-.|..|-+.=.++-....|
T Consensus 1 M~h~~~~~kk~ll~RLkR-IeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~IL 58 (119)
T 2hh7_A 1 MSKELTAKKRAALNRLKT-VRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVML 58 (119)
T ss_dssp ---CCCHHHHHHHHHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777889999974 4431 11234666666666666555555444444
No 10
>4fdi_A N-acetylgalactosamine-6-sulfatase; glycoprotein, enzyme replacement therapy, formylg N-linked glycosylation, lysosomal enzyme, hydrolase; HET: NAG CIT; 2.20A {Homo sapiens} PDB: 4fdj_A*
Probab=11.23 E-value=1.1e+02 Score=24.60 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=16.9
Q ss_pred CchhHHHHHHHHHHHHhhhh
Q psy2364 7 PKRQAVVDRLRRRIENYRRH 26 (119)
Q Consensus 7 pkhsaVVeRLRrRIE~cRrH 26 (119)
|.+..||++|+++++.+++-
T Consensus 433 pe~~~~l~~l~~~l~~~~~~ 452 (502)
T 4fdi_A 433 AEYQEALSRITSVVQQHQEA 452 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 67889999999999887764
Done!